Psyllid ID: psy316
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 341 | 2.2.26 [Sep-21-2011] | |||||||
| Q9HH99 | 270 | Pyrroline-5-carboxylate r | yes | N/A | 0.744 | 0.940 | 0.341 | 5e-36 | |
| Q5SPD7 | 288 | Pyrroline-5-carboxylate r | yes | N/A | 0.718 | 0.850 | 0.347 | 3e-34 | |
| Q53H96 | 274 | Pyrroline-5-carboxylate r | yes | N/A | 0.747 | 0.930 | 0.330 | 3e-33 | |
| P74572 | 267 | Pyrroline-5-carboxylate r | N/A | N/A | 0.744 | 0.951 | 0.332 | 2e-32 | |
| P54904 | 276 | Pyrroline-5-carboxylate r | yes | N/A | 0.736 | 0.909 | 0.319 | 1e-31 | |
| Q20848 | 299 | Putative pyrroline-5-carb | yes | N/A | 0.739 | 0.842 | 0.332 | 1e-31 | |
| Q922W5 | 309 | Pyrroline-5-carboxylate r | yes | N/A | 0.721 | 0.796 | 0.319 | 2e-31 | |
| Q58DT4 | 320 | Pyrroline-5-carboxylate r | yes | N/A | 0.721 | 0.768 | 0.323 | 2e-31 | |
| Q58D08 | 308 | Pyrroline-5-carboxylate r | no | N/A | 0.741 | 0.821 | 0.311 | 4e-31 | |
| Q5RAQ3 | 320 | Pyrroline-5-carboxylate r | yes | N/A | 0.727 | 0.775 | 0.325 | 4e-31 |
| >sp|Q9HH99|P5CR_METAC Pyrroline-5-carboxylate reductase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=proC PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 149/275 (54%), Gaps = 21/275 (7%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALN-DNHRIIKE 124
K+GFIGAG M A+ I+ G+ P I AS E F + ++ DN I++E
Sbjct: 5 KIGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAVIVRE 64
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ + LA+KPQ L S + L N+ + S + +IS+ GV L T + L +
Sbjct: 65 SDILILAVKPQTLSSVLSNLKNE---ITSEKLVISIAAGVPLSTYEDALL-------EGT 114
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
++RVMPN A + +G+ + E L A++I G +PES+M++ +
Sbjct: 115 RVVRVMPNIAATVSEAASGIAPGKN--ATPEDLKAALEIFSAVGTAVQVPESLMDAVTGL 172
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG A++F V++AMADGAV +G+ R AL + AQ + G+ ++ + + HP
Sbjct: 173 SGSGPAFIFPVIEAMADGAVLEGMDRKSALTLAAQTVLGAAKMALETGM--------HPG 224
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARR 339
+KD + SP G+TI GIH+LE+AG+R F +A R
Sbjct: 225 ELKDMVTSPAGTTIQGIHSLEEAGIRAAFMNAVIR 259
|
Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937) EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 2 |
| >sp|Q5SPD7|P5CR3_DANRE Pyrroline-5-carboxylate reductase 3 OS=Danio rerio GN=pycrl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 148/265 (55%), Gaps = 20/265 (7%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
K+GFIGAGNMA VA +I +G P+ II SAPS + E + NH ++ +
Sbjct: 20 KIGFIGAGNMAFGVAQGIIASGKVPPSNIIISAPSMNNLPRFKEKGVSVTHSNHEVVGGS 79
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+FLA+KP + ++ + + + I+SM G+ + TL++ L+P
Sbjct: 80 RLIFLAVKPHIIPQVLKEISQE---VTKEHIIVSMAAGITIATLEE----LLPAGTH--- 129
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIA 245
+IR+MPN +G + H ++ E L + + G+VE PES +++ ++
Sbjct: 130 VIRIMPNLPCMLLEGALLLSCGSHAGEQEETLLKTL--LGPCGLVEFGPESWIDAHVGLS 187
Query: 246 GSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAV 305
GSG A++++ +A+ADGAVK G+P +A RI AQ + G+G L+ +D ++ PA
Sbjct: 188 GSGVAFVYVFAEALADGAVKMGMPSTLARRIAAQTILGAGVLL-RDSGKL-------PAE 239
Query: 306 IKDQICSPGGSTIAGIHALEKAGVR 330
+K ++C+PGG+TI GIHALEK G R
Sbjct: 240 LKAEVCTPGGTTIHGIHALEKGGFR 264
|
Danio rerio (taxid: 7955) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q53H96|P5CR3_HUMAN Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCRL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 144/275 (52%), Gaps = 20/275 (7%)
Query: 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRI 121
P +VGF+GAG MA A+A LIR G I+ASAP++R H+ + N +
Sbjct: 6 PSPRRVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCHFQALGCRTTHSNQEV 65
Query: 122 IKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPN 181
++ V A KP L + L + + ++S+ GV L TL++ +L PN
Sbjct: 66 LQSCLLVIFATKPHVLPAV---LAEVAPVVTTEHILVSVAAGVSLSTLEE---LLPPNTR 119
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF 241
++RV+PN +G M H+ S N+ ++E G E +PE+ ++
Sbjct: 120 ----VLRVLPNLPCVVQEGAIVMARGRHVG--SSETNLLQHLLEACGRCEEVPEAYVDIH 173
Query: 242 GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301
++GSG A++ +A+A+GAVK G+P +A RI AQ L G+ ++ + H Q
Sbjct: 174 TGLSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKM-------LLHEGQ- 225
Query: 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
HPA ++ +C+PGG+TI G+HALE+ G+R SA
Sbjct: 226 HPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSA 260
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|P74572|P5CR_SYNY3 Pyrroline-5-carboxylate reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=proC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 145/277 (52%), Gaps = 23/277 (8%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALN-DNHRI 121
M ++G IG G MA+A+ LI P +II P + + + ++ DN
Sbjct: 1 MSIQLGIIGGGVMAEAILARLIAEKTYAPEEIIVGEPHGARRDYLQKTYQVRVSPDNQEA 60
Query: 122 IKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPN 181
+E + LA+KPQ LD + L + +IS+L GV L+ ++K P+
Sbjct: 61 ANVSEVLLLAVKPQVLDRVLASLAGGA----NRPLVISILAGVSLQRIQKGF------PD 110
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF 241
A IIR MPNT G G+T + + + E + L A I G V +PE++M++
Sbjct: 111 HA--IIRAMPNTPATVGAGMTAIAANKMV--EPDQLAKAKAIFSAVGNVVEVPENLMDAV 166
Query: 242 GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301
++GSG AY+ L+++A+ADG V G+PR +A ++ Q + G+ +L+ + +
Sbjct: 167 TGVSGSGPAYVALMIEALADGGVLAGLPRAIAQKLALQTVLGTAELIKET--------EE 218
Query: 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAAR 338
HPA IKD++ SPGG+TIAG+ LEK G R+ A R
Sbjct: 219 HPAQIKDKVTSPGGTTIAGVAVLEKMGFRSAIIEAVR 255
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Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|P54904|P5CR1_ARATH Pyrroline-5-carboxylate reductase OS=Arabidopsis thaliana GN=PROC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 152/285 (53%), Gaps = 34/285 (11%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALN---DNHRII 122
KVGFIGAG MA+++A ++ +G+ P +I + S + E F +N + ++
Sbjct: 12 KVGFIGAGKMAESIARGVVASGVLPPNRICTAVHSNLNRRDVFE--SFGVNVFSTSEEVV 69
Query: 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPND 182
KE++ V ++KPQ + A+ L K L+ ++ ++S+ G+ L L++ +
Sbjct: 70 KESDVVIFSVKPQVVKKAVTEL---KSKLSKNKILVSVAAGIKLNDLQEW--------SG 118
Query: 183 APTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIP--ESMMNS 240
IRVMPNT G+ + M +E + AI M G + +I+ E M ++
Sbjct: 119 QDRFIRVMPNTPAAVGEAASVMSLGTGATEE----DGAIVAMLFGAVGKILKADEKMFDA 174
Query: 241 FGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQ 300
++GSG AY+FL ++A+ADG V G+PR++AL + +Q + G+ +V K
Sbjct: 175 VTGLSGSGPAYIFLAIEALADGGVAAGLPRELALSLASQTVLGAATMVSK--------TG 226
Query: 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPF----SSAARRTK 341
HP V+KD + SPGG+TIAG+H LEK R +AA+R++
Sbjct: 227 KHPGVLKDDVTSPGGTTIAGVHELEKGSFRATLMNAVVAAAKRSR 271
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q20848|P5CR_CAEEL Putative pyrroline-5-carboxylate reductase OS=Caenorhabditis elegans GN=F55G1.9 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 137/268 (51%), Gaps = 16/268 (5%)
Query: 69 FIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE--PMDFALNDNHRIIKEAE 126
FIG GNMA A+ G + I+ +E+ W + + N + + +
Sbjct: 19 FIGGGNMAAAIIKGCQNKGFTPKSNIVIGVQTEKSAEKWRQLGYKNVFTNTLEMLERYST 78
Query: 127 YVF-LAMKPQYLDSAIQGL-VNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ + +KPQ + + VN + IIS++ GV L+ L KL + N
Sbjct: 79 AIYVICVKPQVFEEVVSSWPVNSRPEF-----IISVMAGVPLKVLNAKLPFVSGNT---- 129
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVH--LDKESEHLNMAIKIMEQGGIVEIIPESMMNSFG 242
TI+R+MPN A G G + MC++ + + + H+ +A + E G VE+IPE N
Sbjct: 130 TIVRLMPNVASSIGAGASTMCYEKNEKIMNQDSHIELAREFAECVGTVELIPERCFNPAM 189
Query: 243 AIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302
AI GS A+ F+ ++++ADGAV QG+ R A R+ AQ + G+ Q+V D Q H
Sbjct: 190 AIGGSSPAWTFMYIESLADGAVAQGLGRAEAKRLAAQAVLGAAQMVLNSNSGFDIETQ-H 248
Query: 303 PAVIKDQICSPGGSTIAGIHALEKAGVR 330
+KD +CSPGG+TI G+ ALEK G R
Sbjct: 249 FGSLKDMVCSPGGTTIEGVRALEKNGFR 276
|
Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q922W5|P5CR1_MOUSE Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Mus musculus GN=Pycr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 145/269 (53%), Gaps = 23/269 (8%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALN-DNHRIIKE 124
VGFIGAG +A A+A G+ +I+AS+P ++ + + L N ++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDQATVSALRKIGVNLTPHNKETVRH 62
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLN--SSRCIISMLVGVDLETLKKKLSVLVPNPND 182
++ +FLA+KP + + D++ N ++S GV + +++KKL+ P
Sbjct: 63 SDVLFLAVKPHIIP-----FILDEIGANIEDRHIVVSCAAGVTINSIEKKLTAFQP---- 113
Query: 183 APTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFG 242
AP +IR M NT + +G+T H E L ++M G + E ++++
Sbjct: 114 APKVIRCMTNTPVVVREGVTVYATGTHAQVEDGRL--VEQLMGSVGFCTEVEEDLIDAVT 171
Query: 243 AIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302
++GSG AY F +DA+ADG VK G+PR +A+R+GAQ L G+ +++ +D ++ H
Sbjct: 172 GLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKML------LD--SEQH 223
Query: 303 PAVIKDQICSPGGSTIAGIHALEKAGVRT 331
P+ +KD +CSPGG+TI +H LE G R+
Sbjct: 224 PSQLKDNVCSPGGATIHALHVLESGGFRS 252
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q58DT4|P5CR1_BOVIN Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Bos taurus GN=PYCR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 144/269 (53%), Gaps = 23/269 (8%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFAL-NDNHRIIKE 124
VGFIGAG +A A+A G+ +I+AS+P + + M L + N ++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVVAAHKIMASSPDMDLATVSALRKMGVNLTHHNKETVQH 62
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLN--SSRCIISMLVGVDLETLKKKLSVLVPNPND 182
++ +FLA+KP + + D++ N + ++S GV + +++KKL+ P
Sbjct: 63 SDVLFLAVKPHIIP-----FILDEIAANIEARHIVVSCAAGVTISSIEKKLTAFQP---- 113
Query: 183 APTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFG 242
AP +IR M NT + +G T H E L ++M G + E ++++
Sbjct: 114 APKVIRCMTNTPVVVREGATVYATGTHAQVEDGRLLE--QLMSSVGFCTEVEEDLIDAVT 171
Query: 243 AIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302
++GSG AY F +DA+ADG VK G+PR +A+R+GAQ L G+ +++ +D ++ H
Sbjct: 172 GLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKML------LD--SEQH 223
Query: 303 PAVIKDQICSPGGSTIAGIHALEKAGVRT 331
P +KD +CSPGG+TI +H LE G R+
Sbjct: 224 PGQLKDNVCSPGGATIHALHVLESGGFRS 252
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. Can utilize both NAD and NADP, but has higher affinity for NAD. Involved in the cellular response to oxidative stress. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q58D08|P5CR3_BOVIN Pyrroline-5-carboxylate reductase 3 OS=Bos taurus GN=PYCRL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 139/273 (50%), Gaps = 20/273 (7%)
Query: 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK 123
W +VGF+GAG MA+A+A LI+ G ++ASAPS+R + + N ++
Sbjct: 10 WRRVGFVGAGRMAEAIAQGLIQAGKVEAEHVLASAPSDRNLCRFRAMGCQTTHSNLEVLH 69
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDA 183
VF A KP L + LV + + ++S+ GV L TL+K L + +
Sbjct: 70 SCSLVFFATKPHILPAV---LVEVAPAVTAEHILVSVAAGVSLSTLEKLLPPMARVLRVS 126
Query: 184 PTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGA 243
P + ++ AM +G ++ L + ++E G E +PE+ ++
Sbjct: 127 PNLPCIVQEGAMVMARGCCAGSYEAQLLR---------SLLEACGQCEEVPEAQVDVHTG 177
Query: 244 IAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303
++GSG A++ +A+A+GA+K G+P +A RI AQ L G+ K LL+ HP
Sbjct: 178 LSGSGVAFVCAFSEALAEGAIKMGMPSGLAHRIAAQTLLGTA----KVLLQKGQ----HP 229
Query: 304 AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
A ++ +C+PGG+TI G+H LE+ G+R SA
Sbjct: 230 AQLRTDVCTPGGTTIYGLHVLEQGGLRATAMSA 262
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q5RAQ3|P5CR2_PONAB Pyrroline-5-carboxylate reductase 2 OS=Pongo abelii GN=PYCR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 141/267 (52%), Gaps = 19/267 (7%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDFALN-DNHRIIKE 124
VGFIGAG +A A+A G+ +IIAS+P + M L N +K
Sbjct: 3 VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKH 62
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + D + + ++S GV + +++KKL P AP
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGAD---VQAGHIVVSCAAGVTISSVEKKLMAFQP----AP 115
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G T H E L ++M G + E ++++ +
Sbjct: 116 KVIRCMTNTPVVVQEGATVYATGTHALVEDGQLLE--QLMSSVGFCTEVEEDLIDAVTGL 173
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F+ +DA+ADG VK G+PR +A+++GAQ L G+ +++ +D ++ HP
Sbjct: 174 SGSGPAYAFMALDALADGGVKMGLPRRLAIQLGAQALLGAAKML------LD--SEQHPC 225
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD +CSPGG+TI +H LE G R+
Sbjct: 226 QLKDNVCSPGGATIHALHFLESGGFRS 252
|
Housekeeping enzyme that catalyzes the last step in proline biosynthesis. In some cell types, such as erythrocytes, its primary function may be the generation of NADP(+). Can utilize both NAD and NADP. Has higher affinity for NADP, but higher catalytic efficiency with NADH. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 5 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 341 | ||||||
| 350404932 | 283 | PREDICTED: pyrroline-5-carboxylate reduc | 0.753 | 0.908 | 0.415 | 9e-50 | |
| 340713311 | 283 | PREDICTED: pyrroline-5-carboxylate reduc | 0.753 | 0.908 | 0.419 | 3e-49 | |
| 380020836 | 290 | PREDICTED: pyrroline-5-carboxylate reduc | 0.750 | 0.882 | 0.398 | 3e-48 | |
| 66534900 | 281 | PREDICTED: pyrroline-5-carboxylate reduc | 0.750 | 0.911 | 0.394 | 2e-47 | |
| 383855048 | 281 | PREDICTED: pyrroline-5-carboxylate reduc | 0.759 | 0.921 | 0.401 | 2e-47 | |
| 332026891 | 281 | Pyrroline-5-carboxylate reductase 2 [Acr | 0.750 | 0.911 | 0.393 | 4e-47 | |
| 156550099 | 282 | PREDICTED: pyrroline-5-carboxylate reduc | 0.744 | 0.900 | 0.391 | 7e-47 | |
| 307182204 | 281 | Pyrroline-5-carboxylate reductase 2 [Cam | 0.733 | 0.889 | 0.381 | 6e-46 | |
| 328793910 | 277 | PREDICTED: pyrroline-5-carboxylate reduc | 0.739 | 0.909 | 0.387 | 1e-44 | |
| 383855050 | 277 | PREDICTED: pyrroline-5-carboxylate reduc | 0.747 | 0.920 | 0.397 | 2e-44 |
| >gi|350404932|ref|XP_003487264.1| PREDICTED: pyrroline-5-carboxylate reductase 2-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 160/272 (58%), Gaps = 15/272 (5%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKE 124
TKVGFIG GNMA A+ LIR G+ P + SA + + W + A N ++
Sbjct: 8 TKVGFIGGGNMASAIGAGLIRKGILDPNNVWVSARTSKTLSFWNDLGAHATLKNGEVVDN 67
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
E +FLAMKPQ LD A++ + + +S+LVGV LETL KL +V +P
Sbjct: 68 CEIIFLAMKPQMLDDALKCTKETMTVHHHYKLFVSVLVGVTLETLSNKLKSIVSHPR--- 124
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
IIR MPNT M G+GIT C D++ M +++ G+ E +P+S+MN+ GA+
Sbjct: 125 -IIRCMPNTPMMVGEGITVYCSVNATDQDEM---MVEELLSYIGVTEHVPQSLMNAIGAL 180
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GS AY +LV++A+ADGAVK G+PR MA + AQ+L G+G++V + HP
Sbjct: 181 SGSSPAYAYLVIEALADGAVKMGVPRPMATKFAAQVLVGAGKMVLE--------TGKHPG 232
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+KD++CSPGG+TIAGIHA+E VR +A
Sbjct: 233 QLKDEVCSPGGTTIAGIHAMECGQVRASMMNA 264
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340713311|ref|XP_003395188.1| PREDICTED: pyrroline-5-carboxylate reductase 2-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 161/272 (59%), Gaps = 15/272 (5%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKE 124
TKVGFIG GNMA A+ LIR G+ P + SA + + W + A N ++
Sbjct: 8 TKVGFIGGGNMASAIGAGLIRKGILDPNNVWVSARTSKTLSFWNDLGAHATLKNGEVVDN 67
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
E +FLAMKPQ LD A++ + + +S+LVGV LETL KL +V +P
Sbjct: 68 CEIIFLAMKPQMLDDALKCTKETMTIHHHYKLFVSVLVGVTLETLSNKLKSIVSHPR--- 124
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
IIR MPNT M G+GIT C V+ + E M +++ G+ E +P+S+MN+ GA+
Sbjct: 125 -IIRCMPNTPMMVGEGITVYC-SVNATVQDE--VMVEELLSYIGVTEHVPQSLMNAIGAL 180
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GS AY +LV++A+ADGAVK G+PR MA + AQ+L G+G++V + HP
Sbjct: 181 SGSSPAYAYLVIEALADGAVKMGVPRPMATKFAAQVLVGAGKMVLE--------TGKHPG 232
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+KD++CSPGG+TIAGIHA+E VR +A
Sbjct: 233 QLKDEVCSPGGTTIAGIHAMECGQVRASMMNA 264
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380020836|ref|XP_003694284.1| PREDICTED: pyrroline-5-carboxylate reductase 2-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 157/271 (57%), Gaps = 15/271 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
KVGFIG GNMA A+ LIR G+ P + SA + + W + A N ++
Sbjct: 19 KVGFIGGGNMASAIGAGLIRKGILNPDNVWVSARTNKTLGFWNDLGAHATLKNGEVVDNC 78
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ +FLAMKP D A++G+ + S +S+LVGV L+ L KL +V P
Sbjct: 79 DIIFLAMKPHMFDDALKGIKETMTSKASHILFVSVLVGVTLDCLANKLKSIV----TYPR 134
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIA 245
IIR MPNT M G+GIT C ++ ++ M K+ G++E +PES+MN+ G ++
Sbjct: 135 IIRCMPNTPMMVGEGITVYCS---MNTTNQDETMIEKLFSYIGVIENVPESLMNAIGGLS 191
Query: 246 GSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAV 305
GSG AY +LV++A+ADGAVK G+PR MA + AQ+L G+G++V + HP
Sbjct: 192 GSGPAYAYLVIEALADGAVKMGVPRPMATKFAAQVLVGAGKMVLE--------TGRHPGQ 243
Query: 306 IKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+KD++CSPGG+TI G+HA+E VR +A
Sbjct: 244 LKDEVCSPGGTTITGVHAMECGQVRASMMNA 274
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66534900|ref|XP_395696.2| PREDICTED: pyrroline-5-carboxylate reductase 2 isoform 2 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/271 (39%), Positives = 157/271 (57%), Gaps = 15/271 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
KVGFIG GNMA A+ LIR G+ P + SA + + W + A N ++
Sbjct: 10 KVGFIGGGNMASAIGAGLIRKGILNPDNVWVSARTNKTLGFWNDLGAHATLKNGEVVDNC 69
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ +FLAMKP D A++G+ + S +S+LVGV L+ L KL +V P
Sbjct: 70 DIIFLAMKPHMFDDALKGIRETMTSKASHILFVSVLVGVTLDCLANKLKSIV----TYPR 125
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIA 245
IIR MPNT M G+GIT C ++ ++ + K+ G++E +PES+MN+ G ++
Sbjct: 126 IIRCMPNTPMMVGEGITVYCS---MNTTNQDETIIEKLFSYIGVIENVPESLMNAIGGLS 182
Query: 246 GSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAV 305
GSG AY +LV++A+ADGAVK G+PR MA + AQ+L G+G++V + HP
Sbjct: 183 GSGPAYAYLVIEALADGAVKMGVPRPMATKFAAQVLVGAGKMVLE--------TGRHPGQ 234
Query: 306 IKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+KD++CSPGG+TI G+HA+E VR +A
Sbjct: 235 LKDEVCSPGGTTITGVHAMECGQVRASMMNA 265
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383855048|ref|XP_003703031.1| PREDICTED: pyrroline-5-carboxylate reductase 3-like isoform 1 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 159/274 (58%), Gaps = 15/274 (5%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRII 122
M +KVGFIG GNMA A+ LI G+ P + SA ++R W + A N ++
Sbjct: 7 MSSKVGFIGGGNMASAIGAGLIHKGILNPHNVWVSARTDRTLGFWIDLGAHATLRNGEVV 66
Query: 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPND 182
E +FLAMKP L+ A+QG+ + + IS+LVGV LETL KL ++V +P
Sbjct: 67 DNCEIIFLAMKPHMLNDALQGIQATIKKKTAEKLFISVLVGVTLETLMNKLKLVVTHPR- 125
Query: 183 APTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFG 242
IIR MPNT M +GIT C +++ + + G+ E +PES++N+
Sbjct: 126 ---IIRCMPNTPMMVAEGITVYCSMNTTEQDESTVGALFSYI---GVSESVPESLINAIS 179
Query: 243 AIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302
A++GSG AY +L+++A+ADGAVK G+PR MA + AQ+L G+G++V + H
Sbjct: 180 ALSGSGPAYAYLIIEALADGAVKMGVPRPMATKFAAQVLVGAGKMVLE--------TGRH 231
Query: 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
P +KD++CSPGG+TI GIHALE VR +A
Sbjct: 232 PGQLKDEVCSPGGTTITGIHALECGQVRASMMNA 265
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026891|gb|EGI66992.1| Pyrroline-5-carboxylate reductase 2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 163/272 (59%), Gaps = 16/272 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
KVGFIG GNMA A+ LIR G+ P + S+ ++R W + A N+ ++
Sbjct: 9 KVGFIGGGNMASAIGAGLIRRGILNPDNVWVSSRTDRTHGFWKDLGARATLKNNEVVNNC 68
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLN-SSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
+ VFL +KP LD A++ +V K ++ IS+L G+ L+ L KLS +V +P
Sbjct: 69 DVVFLTVKPHMLDDALETIVEKKSGEKFETKLFISVLAGISLDVLHIKLSTIVISPR--- 125
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
IIR +PNT M G+GIT C + K+ E ++M + G+ +I+PES++NS G +
Sbjct: 126 -IIRSIPNTPMMIGEGITVYCSNNAEMKDLELVDMLFSYI---GMSQIVPESLINSIGGL 181
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG A+ +L+++A+ADGAVK G+PR MA + AQ+L G+G++V + HP
Sbjct: 182 SGSGPAFAYLIIEALADGAVKMGVPRPMATKFAAQVLVGAGKMVLE--------TGRHPG 233
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+KD++CS GG+TI G+HA+EK GVR +A
Sbjct: 234 QLKDEVCSSGGTTITGVHAMEKGGVRGSMMNA 265
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156550099|ref|XP_001605701.1| PREDICTED: pyrroline-5-carboxylate reductase 1, mitochondrial-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 164/271 (60%), Gaps = 17/271 (6%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
VGF+G GNMAQA+ L++ G+ P I S+ +E+ W +N+ +++ +
Sbjct: 11 NVGFVGGGNMAQAIGLGLVKKGVIKPNNIWVSSRTEKTLSVWESVGINITFNNYEVVQNS 70
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ +FLA+KPQ LD A++ T + + +S++VG+ L+TL +KL + + P
Sbjct: 71 DVIFLAVKPQMLDEALRTCKPPHHT--TGKLFVSVIVGIPLDTLDEKLRAV----DSFPK 124
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIA 245
IIR MP+T M G+GIT C ++E +N + Q G+ E IPES+MNS G ++
Sbjct: 125 IIRSMPSTPMMVGEGITVYCSLRTNEEEECAINY---LFSQLGLCEKIPESLMNSAGGLS 181
Query: 246 GSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAV 305
GSG AY +++++A+ADGAVK+GIPR A R AQ+L G+G++V + HP +
Sbjct: 182 GSGPAYAYMIIEALADGAVKKGIPRASATRFAAQVLVGAGKMVLE--------TGKHPGL 233
Query: 306 IKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+KD++CSPGGSTI G+HA+E GVR +A
Sbjct: 234 LKDEVCSPGGSTITGVHAMETGGVRAAMMNA 264
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307182204|gb|EFN69538.1| Pyrroline-5-carboxylate reductase 2 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 154/265 (58%), Gaps = 15/265 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
KVGFIG GNMA A+ LI G+ P + S ++R W E N+ +
Sbjct: 9 KVGFIGGGNMASAIGAGLIHKGILNPDNVWVSGRTDRTHSFWRELGAHPTLKNNEVANNC 68
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+FL +KP LD A+ +V K ++ IS+LVGV LE L KLS +V +P
Sbjct: 69 NIIFLTVKPHMLDDALNTIVEKKAEKFENKLFISVLVGVSLEILHTKLSAVV----TSPR 124
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIA 245
IIR MPNT M G+GIT C+ + E + L + + GI + +PE+ +N+ G+++
Sbjct: 125 IIRSMPNTPMMVGEGITVYCNK---NAEPKDLELVDTLFSYIGISQSVPENTINAIGSLS 181
Query: 246 GSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAV 305
G G A+ +L+++++ADG V+ G+PR +A + AQ+L G+G++V + HP
Sbjct: 182 GCGPAFAYLIIESLADGGVRMGVPRPIATKFAAQVLVGAGKMVLE--------TGRHPGQ 233
Query: 306 IKDQICSPGGSTIAGIHALEKAGVR 330
+KD++CSPGG++IAG+HA+EK GVR
Sbjct: 234 LKDEVCSPGGNSIAGVHAMEKGGVR 258
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328793910|ref|XP_003251942.1| PREDICTED: pyrroline-5-carboxylate reductase 2 isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/271 (38%), Positives = 154/271 (56%), Gaps = 19/271 (7%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
KVGFIG GNMA A+ LIR G+ P + SA + + W + A N ++
Sbjct: 10 KVGFIGGGNMASAIGAGLIRKGILNPDNVWVSARTNKTLGFWNDLGAHATLKNGEVVDNC 69
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ +FLAMKP D A++G+ + S +S+LVGV L+ L KL +V P
Sbjct: 70 DIIFLAMKPHMFDDALKGIRETMTSKASHILFVSVLVGVTLDCLANKLKSIV----TYPR 125
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIA 245
IIR MPNT M G+GIT C ++ ++ + K+ G++E +PES+MN+ G ++
Sbjct: 126 IIRCMPNTPMMVGEGITVYC---SMNTTNQDETIIEKLFSYIGVIENVPESLMNAIGGLS 182
Query: 246 GSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAV 305
GSG AY+ +A+ADGAVK G+PR MA + AQ+L G+G++V + HP
Sbjct: 183 GSGPAYV----EALADGAVKMGVPRPMATKFAAQVLVGAGKMVLE--------TGRHPGQ 230
Query: 306 IKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+KD++CSPGG+TI G+HA+E VR +A
Sbjct: 231 LKDEVCSPGGTTITGVHAMECGQVRASMMNA 261
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383855050|ref|XP_003703032.1| PREDICTED: pyrroline-5-carboxylate reductase 3-like isoform 2 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/274 (39%), Positives = 155/274 (56%), Gaps = 19/274 (6%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRII 122
M +KVGFIG GNMA A+ LI G+ P + SA ++R W + A N ++
Sbjct: 7 MSSKVGFIGGGNMASAIGAGLIHKGILNPHNVWVSARTDRTLGFWIDLGAHATLRNGEVV 66
Query: 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPND 182
E +FLAMKP L+ A+QG+ + + IS+LVGV LETL KL ++V +P
Sbjct: 67 DNCEIIFLAMKPHMLNDALQGIQATIKKKTAEKLFISVLVGVTLETLMNKLKLVVTHPR- 125
Query: 183 APTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFG 242
IIR MPNT M +GIT C +++ + + G+ E +PES++N+
Sbjct: 126 ---IIRCMPNTPMMVAEGITVYCSMNTTEQDESTVGALFSYI---GVSESVPESLINAIS 179
Query: 243 AIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302
A++GSG AY+ A+ADGAVK G+PR MA + AQ+L G+G++V + H
Sbjct: 180 ALSGSGPAYV----KALADGAVKMGVPRPMATKFAAQVLVGAGKMVLE--------TGRH 227
Query: 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
P +KD++CSPGG+TI GIHALE VR +A
Sbjct: 228 PGQLKDEVCSPGGTTITGIHALECGQVRASMMNA 261
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 341 | ||||||
| FB|FBgn0015781 | 280 | P5cr "Pyrroline 5-carboyxlate | 0.759 | 0.925 | 0.346 | 1.6e-40 | |
| ZFIN|ZDB-GENE-041014-244 | 288 | pycrl "pyrroline-5-carboxylate | 0.715 | 0.847 | 0.360 | 6.5e-35 | |
| UNIPROTKB|Q53H96 | 274 | PYCRL "Pyrroline-5-carboxylate | 0.747 | 0.930 | 0.352 | 1.2e-33 | |
| UNIPROTKB|Q58DT4 | 320 | PYCR1 "Pyrroline-5-carboxylate | 0.727 | 0.775 | 0.318 | 2.3e-32 | |
| UNIPROTKB|Q96C36 | 320 | PYCR2 "Pyrroline-5-carboxylate | 0.727 | 0.775 | 0.325 | 2.3e-32 | |
| MGI|MGI:2384795 | 309 | Pycr1 "pyrroline-5-carboxylate | 0.727 | 0.802 | 0.314 | 2.3e-32 | |
| UNIPROTKB|Q17QJ7 | 320 | PYCR2 "Pyrroline-5-carboxylate | 0.727 | 0.775 | 0.325 | 6e-32 | |
| UNIPROTKB|F1S8R2 | 320 | LOC100524702 "Pyrroline-5-carb | 0.727 | 0.775 | 0.325 | 6e-32 | |
| UNIPROTKB|E2R5K3 | 320 | PYCR2 "Pyrroline-5-carboxylate | 0.727 | 0.775 | 0.325 | 7.7e-32 | |
| FB|FBgn0038516 | 273 | CG5840 [Drosophila melanogaste | 0.739 | 0.923 | 0.317 | 9.8e-32 |
| FB|FBgn0015781 P5cr "Pyrroline 5-carboyxlate reductase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 97/280 (34%), Positives = 159/280 (56%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
K+GFIG GNM A+ + L+R G+ +Q+ S P W + +DN +++ +
Sbjct: 7 KIGFIGGGNMVYAIGSGLVRCGIVKASQVQVSGPHIENLQRWRDLGAVTCDDNCMVLEHS 66
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKV--TLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDA 183
+ VF+ +KP L L V ++S+ ++S+L G L+TL++ S + +
Sbjct: 67 DIVFICVKPHMLTPCAAQLKYKHVPSAKDASKLVVSVLAGTSLQTLEEAFSFM---GSSE 123
Query: 184 PTIIRVMPNTAMKYGKGIT---GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNS 240
+IR MPNT+M+ G+G T G H D E HL ++ G+ + +PESM+++
Sbjct: 124 LKVIRTMPNTSMQVGEGCTVYTGNARVSHHDLEKIHL-----MLNALGLAQQVPESMIDA 178
Query: 241 FGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQ 300
+AG G A+++ +++A+ADG VKQG+PR MAL+ AQ L G+ + V LL
Sbjct: 179 VTPVAGCGPAFVYTIIEALADGGVKQGVPRQMALQFAAQTLLGAAKTV---LL-----TG 230
Query: 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340
HPAV++D++CSPGG+TI G+H LEK +R+ +A ++
Sbjct: 231 KHPAVLRDEVCSPGGATIVGVHELEKGNLRSTLINAVEKS 270
|
|
| ZFIN|ZDB-GENE-041014-244 pycrl "pyrroline-5-carboxylate reductase-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 96/266 (36%), Positives = 152/266 (57%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
K+GFIGAGNMA VA +I +G P+ II SAPS + E + NH ++ +
Sbjct: 20 KIGFIGAGNMAFGVAQGIIASGKVPPSNIIISAPSMNNLPRFKEKGVSVTHSNHEVVGGS 79
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+FLA+KP + ++ ++ +VT I+SM G+ + TL++ L+P A T
Sbjct: 80 RLIFLAVKPHIIPQVLKE-ISQEVT--KEHIIVSMAAGITIATLEE----LLP----AGT 128
Query: 186 -IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR+MPN +G + H ++ E L + + G+VE PES +++ +
Sbjct: 129 HVIRIMPNLPCMLLEGALLLSCGSHAGEQEETLLKTL--LGPCGLVEFGPESWIDAHVGL 186
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG A++++ +A+ADGAVK G+P +A RI AQ + G+G L+ +D ++ PA
Sbjct: 187 SGSGVAFVYVFAEALADGAVKMGMPSTLARRIAAQTILGAGVLL-RDSGKL-------PA 238
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVR 330
+K ++C+PGG+TI GIHALEK G R
Sbjct: 239 ELKAEVCTPGGTTIHGIHALEKGGFR 264
|
|
| UNIPROTKB|Q53H96 PYCRL "Pyrroline-5-carboxylate reductase 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 97/275 (35%), Positives = 148/275 (53%)
Query: 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRI 121
P +VGF+GAG MA A+A LIR G I+ASAP++R H+ + N +
Sbjct: 6 PSPRRVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCHFQALGCRTTHSNQEV 65
Query: 122 IKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPN 181
++ V A KP L A+ V VT + ++S+ GV L TL++ L+P PN
Sbjct: 66 LQSCLLVIFATKPHVLP-AVLAEVAPVVT--TEHILVSVAAGVSLSTLEE----LLP-PN 117
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF 241
++RV+PN +G M H+ S N+ ++E G E +PE+ ++
Sbjct: 118 TR--VLRVLPNLPCVVQEGAIVMARGRHVG--SSETNLLQHLLEACGRCEEVPEAYVDIH 173
Query: 242 GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301
++GSG A++ +A+A+GAVK G+P +A RI AQ L G+ ++ LL H Q
Sbjct: 174 TGLSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKM----LL---HEGQ- 225
Query: 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
HPA ++ +C+PGG+TI G+HALE+ G+R SA
Sbjct: 226 HPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSA 260
|
|
| UNIPROTKB|Q58DT4 PYCR1 "Pyrroline-5-carboxylate reductase 1, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 85/267 (31%), Positives = 142/267 (53%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFAL-NDNHRIIKE 124
VGFIGAG +A A+A G+ +I+AS+P + + M L + N ++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVVAAHKIMASSPDMDLATVSALRKMGVNLTHHNKETVQH 62
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + + + ++S GV + +++KKL+ P AP
Sbjct: 63 SDVLFLAVKPHIIPFILDEIA---ANIEARHIVVSCAAGVTISSIEKKLTAFQP----AP 115
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G T H E L ++M G + E ++++ +
Sbjct: 116 KVIRCMTNTPVVVREGATVYATGTHAQVEDGRL--LEQLMSSVGFCTEVEEDLIDAVTGL 173
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F +DA+ADG VK G+PR +A+R+GAQ L G+ +++ +D ++ HP
Sbjct: 174 SGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKML------LD--SEQHPG 225
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD +CSPGG+TI +H LE G R+
Sbjct: 226 QLKDNVCSPGGATIHALHVLESGGFRS 252
|
|
| UNIPROTKB|Q96C36 PYCR2 "Pyrroline-5-carboxylate reductase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 87/267 (32%), Positives = 141/267 (52%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFK-LHWPEPMDFALN-DNHRIIKE 124
VGFIGAG +A A+A G+ +IIAS+P + M L N +K
Sbjct: 3 VGFIGAGQLAYALARGFTAAGILSAHKIIASSPEMNLPTVSALRKMGVNLTRSNKETVKH 62
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + D + + ++S GV + +++KKL P AP
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGAD---VQARHIVVSCAAGVTISSVEKKLMAFQP----AP 115
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G T H E L ++M G + E ++++ +
Sbjct: 116 KVIRCMTNTPVVVQEGATVYATGTHALVEDGQL--LEQLMSSVGFCTEVEEDLIDAVTGL 173
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F+ +DA+ADG VK G+PR +A+++GAQ L G+ +++ +D ++ HP
Sbjct: 174 SGSGPAYAFMALDALADGGVKMGLPRRLAIQLGAQALLGAAKML------LD--SEQHPC 225
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD +CSPGG+TI +H LE G R+
Sbjct: 226 QLKDNVCSPGGATIHALHFLESGGFRS 252
|
|
| MGI|MGI:2384795 Pycr1 "pyrroline-5-carboxylate reductase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 84/267 (31%), Positives = 143/267 (53%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALND-NHRIIKE 124
VGFIGAG +A A+A G+ +I+AS+P ++ + + L N ++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDQATVSALRKIGVNLTPHNKETVRH 62
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + + ++S GV + +++KKL+ P AP
Sbjct: 63 SDVLFLAVKPHIIPFILDEI---GANIEDRHIVVSCAAGVTINSIEKKLTAFQP----AP 115
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G+T H E L ++M G + E ++++ +
Sbjct: 116 KVIRCMTNTPVVVREGVTVYATGTHAQVEDGRL--VEQLMGSVGFCTEVEEDLIDAVTGL 173
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F +DA+ADG VK G+PR +A+R+GAQ L G+ +++ +D ++ HP+
Sbjct: 174 SGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKML------LD--SEQHPS 225
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD +CSPGG+TI +H LE G R+
Sbjct: 226 QLKDNVCSPGGATIHALHVLESGGFRS 252
|
|
| UNIPROTKB|Q17QJ7 PYCR2 "Pyrroline-5-carboxylate reductase 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 87/267 (32%), Positives = 141/267 (52%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFK-LHWPEPMDFALN-DNHRIIKE 124
VGFIGAG +A A+A G+ +IIAS+P + M L N ++
Sbjct: 3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVSALRKMGVNLTRSNKETVRH 62
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + D + + ++S GV + +++KKL P AP
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGAD---VQARHIVVSCAAGVTISSVEKKLMAFQP----AP 115
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G T H E L ++M G + E ++++ +
Sbjct: 116 KVIRCMTNTPVLVREGATVYATGTHALVEDGQL--LEQLMSSVGFCTEVEEDLIDAVTGL 173
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F+ +DA+ADG VK G+PR +A+R+GAQ L G+ +++ +D ++ HP
Sbjct: 174 SGSGPAYAFMALDALADGGVKMGLPRRLAVRLGAQALLGAAKML------LD--SEQHPG 225
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD +CSPGG+TI +H LE G R+
Sbjct: 226 QLKDNVCSPGGATIHALHFLESGGFRS 252
|
|
| UNIPROTKB|F1S8R2 LOC100524702 "Pyrroline-5-carboxylate reductase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 87/267 (32%), Positives = 141/267 (52%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFK-LHWPEPMDFALN-DNHRIIKE 124
VGFIGAG +A A+A G+ +IIAS+P + M L N ++
Sbjct: 3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVAALRKMGVNLTRSNKETVRH 62
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + D + + ++S GV + +++KKL P AP
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGAD---VQARHIVVSCAAGVTISSVEKKLQAFQP----AP 115
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G T H E L ++M G + E ++++ +
Sbjct: 116 KVIRCMTNTPVVVREGATVYATGTHALVEDGQL--LEQLMSSVGFCTEVEEDLIDAVTGL 173
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F+ +DA+ADG VK G+PR +A+R+GAQ L G+ +++ +D ++ HP
Sbjct: 174 SGSGPAYAFMALDALADGGVKMGLPRRLAVRLGAQALLGAAKML------LD--SEQHPG 225
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD +CSPGG+TI +H LE G R+
Sbjct: 226 QLKDNVCSPGGATIHALHFLESGGFRS 252
|
|
| UNIPROTKB|E2R5K3 PYCR2 "Pyrroline-5-carboxylate reductase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 87/267 (32%), Positives = 142/267 (53%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFK-LHWPEPMDFALNDNHR-IIKE 124
VGFIGAG +A A+A G+ +IIAS+P + M L N++ ++
Sbjct: 3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVSSLRKMGVNLTRNNKETVRH 62
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
++ +FLA+KP + + + D + ++S GV + +++KKL P AP
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGAD---VQPRHIVVSCAAGVTISSVEKKLMAFQP----AP 115
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+IR M NT + +G T H E L ++M G + E ++++ +
Sbjct: 116 KVIRCMTNTPVVVREGATVYATGTHALVEDGQL--LEQLMSSVGYCTEVEEDLIDAVTGL 173
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY F+ +DA+ADG VK G+PR +A+R+GAQ L G+ +++ +D ++ HP
Sbjct: 174 SGSGPAYAFMALDALADGGVKMGLPRRLAVRLGAQALLGAAKML------LD--SEQHPG 225
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRT 331
+KD +CSPGG+TI +H LE G R+
Sbjct: 226 QLKDNVCSPGGATIHALHFLESGGFRS 252
|
|
| FB|FBgn0038516 CG5840 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 88/277 (31%), Positives = 154/277 (55%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA-PSERFKLHWPEPMDF-ALNDNHRIIK 123
K+GF+G GNMA+A+A + GL P +IAS P+++ L + + + N +++
Sbjct: 6 KIGFLGGGNMAKALAKGFLAAGLAKPNTLIASVHPADKLSLQSFQSLGVETVIKNAPVVQ 65
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDA 183
+++ VF+++KPQ + S + + L+S + +S+ +G+ L T++ LS P
Sbjct: 66 QSDVVFVSVKPQVVPSVLSEIQ----PLSSGKLFLSVAMGITLSTIESSLS---PQAR-- 116
Query: 184 PTIIRVMPNTAMKYGKGITGMCHDVHLDKESE-HLNMAIKIMEQGGIVEIIPESMMNSFG 242
+IRVMPN G + V K ++ ++ K+++ G E + ES ++
Sbjct: 117 --VIRVMPNLPAVVCSGCSVF---VRGSKATDADADITQKLLQSVGTCEPVDESQLDVVT 171
Query: 243 AIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302
A++GSG AY+F++++A+ADGAV G+PRD+A R+ +Q + G+G +V +D + H
Sbjct: 172 ALSGSGPAYVFVMIEALADGAVHMGMPRDLAYRLASQTVLGAGHMV-RD-------SGMH 223
Query: 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARR 339
P +KD + SP GST A + LE +G R S A +
Sbjct: 224 PGQLKDGVTSPAGSTAAALRQLELSGFRAAVSGAVEQ 260
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5RAQ3 | P5CR2_PONAB | 1, ., 5, ., 1, ., 2 | 0.3258 | 0.7272 | 0.775 | yes | N/A |
| Q5SPD7 | P5CR3_DANRE | 1, ., 5, ., 1, ., 2 | 0.3471 | 0.7184 | 0.8506 | yes | N/A |
| P54904 | P5CR1_ARATH | 1, ., 5, ., 1, ., 2 | 0.3192 | 0.7360 | 0.9094 | yes | N/A |
| Q53H96 | P5CR3_HUMAN | 1, ., 5, ., 1, ., 2 | 0.3309 | 0.7478 | 0.9306 | yes | N/A |
| Q922W5 | P5CR1_MOUSE | 1, ., 5, ., 1, ., 2 | 0.3197 | 0.7214 | 0.7961 | yes | N/A |
| Q20848 | P5CR_CAEEL | 1, ., 5, ., 1, ., 2 | 0.3320 | 0.7390 | 0.8428 | yes | N/A |
| Q9HH99 | P5CR_METAC | 1, ., 5, ., 1, ., 2 | 0.3418 | 0.7448 | 0.9407 | yes | N/A |
| P0A9L9 | P5CR_SHIFL | 1, ., 5, ., 1, ., 2 | 0.3309 | 0.7096 | 0.8996 | yes | N/A |
| Q58DT4 | P5CR1_BOVIN | 1, ., 5, ., 1, ., 2 | 0.3234 | 0.7214 | 0.7687 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.5.1.2 | 0.737 |
| 3rd Layer | 1.5.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 341 | |||
| PRK11880 | 267 | PRK11880, PRK11880, pyrroline-5-carboxylate reduct | 3e-69 | |
| COG0345 | 266 | COG0345, ProC, Pyrroline-5-carboxylate reductase [ | 2e-68 | |
| TIGR00112 | 245 | TIGR00112, proC, pyrroline-5-carboxylate reductase | 3e-60 | |
| PLN02688 | 266 | PLN02688, PLN02688, pyrroline-5-carboxylate reduct | 1e-56 | |
| PRK07679 | 279 | PRK07679, PRK07679, pyrroline-5-carboxylate reduct | 4e-41 | |
| PRK12491 | 272 | PRK12491, PRK12491, pyrroline-5-carboxylate reduct | 7e-32 | |
| PTZ00431 | 260 | PTZ00431, PTZ00431, pyrroline carboxylate reductas | 3e-30 | |
| PRK07634 | 245 | PRK07634, PRK07634, pyrroline-5-carboxylate reduct | 9e-20 | |
| PRK06476 | 258 | PRK06476, PRK06476, pyrroline-5-carboxylate reduct | 3e-10 | |
| PRK07680 | 273 | PRK07680, PRK07680, late competence protein ComER; | 2e-08 | |
| PRK06928 | 277 | PRK06928, PRK06928, pyrroline-5-carboxylate reduct | 2e-07 | |
| pfam03807 | 93 | pfam03807, F420_oxidored, NADP oxidoreductase coen | 9e-07 |
| >gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 216 bits (554), Expect = 3e-69
Identities = 91/283 (32%), Positives = 143/283 (50%), Gaps = 39/283 (13%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFAL------- 115
M K+GFIG GNMA A+ L+ +G+ II S PS PE
Sbjct: 1 MMKKIGFIGGGNMASAIIGGLLASGVP-AKDIIVSDPS-------PEKRAALAEEYGVRA 52
Query: 116 -NDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174
DN +EA+ V LA+KPQ ++ + L K L+ ++S+ GV L L++ L
Sbjct: 53 ATDNQEAAQEADVVVLAVKPQVMEEVLSEL---KGQLDKL--VVSIAAGVTLARLERLL- 106
Query: 175 VLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIP 234
D P ++R MPNT G G+T + + + E + ++ G V +
Sbjct: 107 -----GADLP-VVRAMPNTPALVGAGMTALTANALVSAE--DRELVENLLSAFGKVVWVD 158
Query: 235 -ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLL 293
E M++ A++GSG AY+FL ++A+AD VK G+PR+ A ++ AQ + G+ +L+ +
Sbjct: 159 DEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLE--- 215
Query: 294 RMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+ HPA ++D + SPGG+TIA + LE+ G+R A
Sbjct: 216 -----SGEHPAELRDNVTSPGGTTIAALRVLEEKGLRAAVIEA 253
|
Length = 267 |
| >gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 2e-68
Identities = 89/277 (32%), Positives = 149/277 (53%), Gaps = 23/277 (8%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHR-IIK 123
K+GFIGAGNM +A+ + L+++G P +II + SE + +++ ++
Sbjct: 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVE 61
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDA 183
EA+ VFLA+KPQ L+ + L + +IS+ GV +ETL++ L
Sbjct: 62 EADVVFLAVKPQDLEEVLSKLKPL----TKDKLVISIAAGVSIETLERLL--------GG 109
Query: 184 PTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGA 243
++RVMPNT G G+T + + ++ +E ++ G V + ES+M++ A
Sbjct: 110 LRVVRVMPNTPALVGAGVTAISANANVSEE--DKAFVEALLSAVGKVVEVEESLMDAVTA 167
Query: 244 IAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303
++GSG AY+FL ++A+AD V+ G+PR+ A + AQ + G+ +L+ + HP
Sbjct: 168 LSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLES--------GEHP 219
Query: 304 AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340
A ++DQ+ SPGG+TIAG+ LE+ G R A
Sbjct: 220 AELRDQVTSPGGTTIAGLRVLEEDGFRGAVIEAVEAA 256
|
Length = 266 |
| >gnl|CDD|232829 TIGR00112, proC, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 3e-60
Identities = 92/271 (33%), Positives = 148/271 (54%), Gaps = 39/271 (14%)
Query: 83 LIRTGLCIPAQIIASAPSERFKLHWPEPMDF--------ALNDNHRIIKEAEYVFLAMKP 134
L++ G II S PE + A +D +KEA+ VFLA+KP
Sbjct: 1 LLKAGALAAYDIIVINRS-------PEKLAALAKELGIVASSDAQEAVKEADVVFLAVKP 53
Query: 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTA 194
Q L+ + L ++K + +IS+ GV LE L + L ++RVMPNT
Sbjct: 54 QDLEEVLSELKSEK---GKDKLLISIAAGVTLEKLSQLL------GGTRR-VVRVMPNTP 103
Query: 195 MKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFL 254
K G G+T + + ++ E + + + + G V +PE++M++ A++GSG AY+FL
Sbjct: 104 AKVGAGVTAIAANANVS--EEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFL 161
Query: 255 VMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPG 314
++A+AD VKQG+PR++AL + AQ +KG+ +L+ + + HPA++KDQ+ SPG
Sbjct: 162 FIEALADAGVKQGLPRELALELAAQTVKGAAKLLEE--------SGEHPALLKDQVTSPG 213
Query: 315 GSTIAGIHALEKAGVRTPFS----SAARRTK 341
G+TIAG+ LE+ GVR +A RR++
Sbjct: 214 GTTIAGLAVLEEKGVRGAVIEAVEAAVRRSR 244
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs [Amino acid biosynthesis, Glutamate family]. Length = 245 |
| >gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 1e-56
Identities = 80/282 (28%), Positives = 143/282 (50%), Gaps = 36/282 (12%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS--------ERFKLHWPEPMDFALN 116
+VGFIGAG MA+A+A L+ +G+ P++I + S + +
Sbjct: 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVK-------TAA 53
Query: 117 DNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVL 176
N ++K ++ + LA+KPQ + + L + L+ + ++S+ G+ L L++
Sbjct: 54 SNTEVVKSSDVIILAVKPQVVKDVLTEL---RPLLSKDKLLVSVAAGITLADLQEWAGG- 109
Query: 177 VPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236
++RVMPNT G+ + M ++ ++ + G + ++ E
Sbjct: 110 -------RRVVRVMPNTPCLVGEAASVMSLGPAAT--ADDRDLVATLFGAVGKIWVVDEK 160
Query: 237 MMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMD 296
++++ ++GSG AY+FL ++A+ADG V G+PRD+AL + AQ + G+ ++V +
Sbjct: 161 LLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLET----- 215
Query: 297 HAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAAR 338
HP +KD + SPGG+TIAG+H LEK G R +A
Sbjct: 216 ---GKHPGQLKDMVTSPGGTTIAGVHELEKGGFRAALMNAVV 254
|
Length = 266 |
| >gnl|CDD|181079 PRK07679, PRK07679, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 4e-41
Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 24/263 (9%)
Query: 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNH---RIIK 123
+ F+GAG++A+A+ L+ + QI S S +L + + H ++
Sbjct: 6 ISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELH-QKYGVKGTHNKKELLT 64
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDA 183
+A +FLAMKP+ + L+ K +++++ IIS+L GV +++ L VP
Sbjct: 65 DANILFLAMKPK---DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVP----- 116
Query: 184 PTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGA 243
IIR MPNT+ K T + H E H+ A + E G+V ++ E M++ A
Sbjct: 117 --IIRAMPNTSAAILKSATAISPSKHATAE--HIQTAKALFETIGLVSVVEEEDMHAVTA 172
Query: 244 IAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303
++GSG AY++ V++AM A K G+ D+A + Q + G+ + M A++ HP
Sbjct: 173 LSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAE--------MLKASEKHP 224
Query: 304 AVIKDQICSPGGSTIAGIHALEK 326
++++ +I SPGG+T AGI L++
Sbjct: 225 SILRKEITSPGGTTEAGIEVLQE 247
|
Length = 279 |
| >gnl|CDD|105695 PRK12491, PRK12491, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 7e-32
Identities = 78/278 (28%), Positives = 142/278 (51%), Gaps = 21/278 (7%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALNDNHRI 121
M ++GFIG GNM A+ +I + P QII S + K + +N+ +
Sbjct: 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEV 60
Query: 122 IKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPN 181
A+ + L++KP S I + + + + ++++ G +++ + + +
Sbjct: 61 ANSADILILSIKPDLYSSVINQIKDQ---IKNDVIVVTIAAGKSIKSTENEFDRKL---- 113
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF 241
+IRVMPNT + G+G++ +C + + ++ + + I G E++ E +M+
Sbjct: 114 ---KVIRVMPNTPVLVGEGMSALCFNEMVTEKD--IKEVLNIFNIFGQTEVVNEKLMDVV 168
Query: 242 GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301
+I+GS AY+++ ++AMAD AV G+PR A + AQ + GS ++V +
Sbjct: 169 TSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLE--------TGI 220
Query: 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARR 339
HP +KD +CSPGG+TI + LE+ G+RT SA +R
Sbjct: 221 HPGELKDMVCSPGGTTIEAVATLEEKGLRTAIISAMKR 258
|
Length = 272 |
| >gnl|CDD|173621 PTZ00431, PTZ00431, pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-30
Identities = 85/261 (32%), Positives = 132/261 (50%), Gaps = 27/261 (10%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
+VGFIG G M A+A + + + I PS++ P + L N + K
Sbjct: 5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK-----NTPFVY-LQSNEELAKTC 58
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ + LA+KP D A + L+ K L S+ +IS+ G++L+TL++ + V
Sbjct: 59 DIIVLAVKP---DLAGKVLLEIKPYL-GSKLLISICGGLNLKTLEEMVGV-------EAK 107
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIA 245
I+RVMPNT G+G C + ++D S I I GI++ I E M+ AI+
Sbjct: 108 IVRVMPNTPSLVGQGSLVFCANNNVD--STDKKKVIDIFSACGIIQEIKEKDMDIATAIS 165
Query: 246 GSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAV 305
G G AY+FL ++++ D VK G+ RD++ + Q + GS +V D Q
Sbjct: 166 GCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKAS----DQPVQQ---- 217
Query: 306 IKDQICSPGGSTIAGIHALEK 326
+KD +CSPGG TI G++ LEK
Sbjct: 218 LKDDVCSPGGITIVGLYTLEK 238
|
Length = 260 |
| >gnl|CDD|181063 PRK07634, PRK07634, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 9e-20
Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 28/261 (10%)
Query: 69 FIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-WPEPMDFALNDNHR-IIKEAE 126
FIGAG MA+A+ + L++T +II S S KL + + + + + +
Sbjct: 9 FIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVD 68
Query: 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTI 186
+ LAM P SA + L+ + L S++ ++++ G+ L+++L P P
Sbjct: 69 TIVLAMPP----SAHEELLAELSPLLSNQLVVTVAAGIGPSYLEERL------PKGTPVA 118
Query: 187 IRVMPNTAMKYGKGIT--GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
+MPNTA + GK I+ M V+ + E L + +K + G ++ E ++ A+
Sbjct: 119 W-IMPNTAAEIGKSISLYTMGQSVN-ETHKETLQLILKGI---GTSQLCTEEEVHQLTAV 173
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
GS A+L+ +++ + G+ + A + Q++ GS ++ + PA
Sbjct: 174 TGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ---------TQDPA 224
Query: 305 VIKDQICSPGGSTIAGIHALE 325
+++Q+ +PGGST G+ AL
Sbjct: 225 NLREQVTTPGGSTAEGLKALY 245
|
Length = 245 |
| >gnl|CDD|235812 PRK06476, PRK06476, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 34/215 (15%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQI-------IASAPSERFKLHWPEPMDFALNDN 118
K+GFIG G + +A+ T L+ + + I IA+ +ERF P DN
Sbjct: 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF------PKVRIAKDN 55
Query: 119 HRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVP 178
++ ++ VFLA++PQ + ++ L + +IS++ D L + + V
Sbjct: 56 QAVVDRSDVVFLAVRPQIAEEVLRAL-----RFRPGQTVISVIAATDRAALLEWIGHDV- 109
Query: 179 NPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMM 238
++R +P + KG+T + D L A+ G VE E
Sbjct: 110 ------KLVRAIPLPFVAERKGVTAIYPP---DPFVAALFDAL-----GTAVECDSEEEY 155
Query: 239 NSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMA 273
+ A A + A F +++ +QG+ R A
Sbjct: 156 DLL-AAASALMATYFGILETATGWLEEQGLKRQKA 189
|
Length = 258 |
| >gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 60/287 (20%), Positives = 120/287 (41%), Gaps = 44/287 (15%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIAS--APSERFKLHWPEPMDFALNDNHRIIK 123
+GFIG GNM + + + +G P+Q+ + P++ + + P +I
Sbjct: 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVIS 61
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDA 183
+++ +F+ +KP + +Q L L C++S+ + +E L+ + V
Sbjct: 62 QSDLIFICVKPLDIYPLLQKL---APHLTDEHCLVSITSPISVEQLETLVPCQV------ 112
Query: 184 PTIIRVMP---NTAMK------YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIP 234
R++P N A+ +G + S +++ + I E I +
Sbjct: 113 ---ARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFS-NISTPLVIEE--DITRVSS 166
Query: 235 ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQ-GIPRDMALRIGAQLLKGSGQLVHKDLL 293
+ I G A+ ++ D AV++ I ++ A + +++L G G+L+ K L
Sbjct: 167 D--------IVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKGLY 218
Query: 294 RMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340
+ P +++++C GG T GI LE+ V F +RT
Sbjct: 219 TL-------PT-LQEKVCVKGGITGEGIKVLEE-EVGDMFHRLFQRT 256
|
Length = 273 |
| >gnl|CDD|235888 PRK06928, PRK06928, pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 24/208 (11%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-----RFKLHWPEPMDFALNDNH 119
K+GFIG G+MA +AT L+ T + P +II + S+ + +P
Sbjct: 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAE- 60
Query: 120 RIIKEAEYVFLAMKPQYLDSAIQGLVND-KVTLNSSRCIISMLVGVDLETLKKKLSVLVP 178
I + ++ F+ + P A+ L+ D L R ++S+ GV L+ L + L
Sbjct: 61 -IFTKCDHSFICVPPL----AVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGL-- 113
Query: 179 NPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKE-SEHLNMAIKIMEQGGIVEIIPESM 237
+ R++P+ G G + + H +++ L + V I E
Sbjct: 114 ------QVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHF---SHVMTIREEN 164
Query: 238 MNSFGAIAGSGCAYLFLVMDAMADGAVK 265
M+ + S ++ + + A+ AV+
Sbjct: 165 MDIASNLTSSSPGFIAAIFEEFAEAAVR 192
|
Length = 277 |
| >gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme F420-dependent | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 9e-07
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE--RFKLHWPEPMDFALNDNHRIIK 123
K+G IGAGNM +A+A L G + +IA++ + L + N ++
Sbjct: 1 KIGIIGAGNMGEALARGLAAAGHEV---VIANSRNPEKAAALAEELGVKATAVSNEEAVE 57
Query: 124 EAEYVFLAMKPQYLDSAIQGLVND 147
EA+ VFLA+KP+ + L +
Sbjct: 58 EADVVFLAVKPEDAPEVLAELADL 81
|
Length = 93 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 341 | |||
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 100.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 100.0 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 100.0 | |
| KOG3124|consensus | 267 | 100.0 | ||
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 100.0 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 100.0 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.98 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.93 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.91 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.89 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.89 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.89 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.89 | |
| PF14748 | 107 | P5CR_dimer: Pyrroline-5-carboxylate reductase dime | 99.88 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.88 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.86 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.83 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.83 | |
| KOG0409|consensus | 327 | 99.82 | ||
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.82 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.8 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.8 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.78 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.78 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.78 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.78 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.78 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.78 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.77 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.76 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.76 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.75 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.75 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.74 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.74 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.74 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.73 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.73 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.72 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.72 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.71 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.7 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.7 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.69 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.68 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.68 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.66 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.65 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.63 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.62 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.62 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.59 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.59 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.58 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.58 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.57 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.57 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.55 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.55 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.52 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.51 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.5 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.5 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.49 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.48 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.48 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.47 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.47 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.46 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.45 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.43 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.43 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.41 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.38 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.37 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.32 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.29 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.28 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.27 | |
| KOG2380|consensus | 480 | 99.25 | ||
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.2 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.2 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.19 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.18 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.18 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.14 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.12 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.12 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.08 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 99.07 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 99.03 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 99.0 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.99 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.88 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.86 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.86 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.83 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 98.79 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.74 | |
| KOG2711|consensus | 372 | 98.72 | ||
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 98.71 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.7 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.68 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.67 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.64 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.62 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.62 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.61 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 98.6 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.53 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.51 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.51 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.51 | |
| KOG2653|consensus | 487 | 98.46 | ||
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.44 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.44 | |
| KOG2304|consensus | 298 | 98.42 | ||
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.38 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.33 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.31 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.31 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.29 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 98.27 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.27 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.26 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.26 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.24 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.24 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.23 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.23 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 98.22 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.2 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.14 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.13 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.11 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.11 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.09 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.09 | |
| KOG0069|consensus | 336 | 98.09 | ||
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.09 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.08 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.06 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.05 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.02 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.0 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 98.0 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.99 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.99 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.96 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.94 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.94 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.93 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.92 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.92 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.91 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.9 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.88 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.88 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.87 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.86 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.85 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.83 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.82 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.79 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.79 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.78 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.77 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.76 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.76 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.75 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.74 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.72 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.71 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.71 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.71 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.71 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.69 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.68 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.68 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.68 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.66 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.65 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.64 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.62 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.61 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.61 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.61 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.6 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.6 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.58 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.56 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.56 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.55 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.54 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.52 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.5 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.5 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.49 | |
| KOG2305|consensus | 313 | 97.47 | ||
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.46 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.46 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.46 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.43 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 97.43 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.43 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.42 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.4 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.36 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.35 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.34 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.34 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.34 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.3 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.3 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.29 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.28 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.28 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.28 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.26 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.26 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.26 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.23 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.23 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.23 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.21 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.19 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.19 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.19 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.18 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.16 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.15 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.13 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.12 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.12 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.07 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.05 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.05 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.05 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.04 | |
| PLN00106 | 323 | malate dehydrogenase | 97.02 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.99 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.97 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.95 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.93 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.93 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.92 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.9 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.89 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.88 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 96.88 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.87 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.86 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.85 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.85 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.8 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.78 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.71 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.66 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.64 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.63 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.62 | |
| KOG2741|consensus | 351 | 96.62 | ||
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 96.61 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.58 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.58 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.57 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.55 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.55 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.54 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.54 | |
| KOG2666|consensus | 481 | 96.47 | ||
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.45 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.45 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.43 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 96.41 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.4 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 96.39 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 96.39 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.39 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.38 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.36 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.3 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.3 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.29 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.27 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.26 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.22 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.21 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.19 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.19 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 96.19 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.18 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.17 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.17 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.12 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.1 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.09 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.08 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.96 | |
| KOG0068|consensus | 406 | 95.92 | ||
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.9 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.88 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.83 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.82 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.73 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.69 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.69 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.64 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.59 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.58 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.57 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 95.57 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.55 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 95.52 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 95.46 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.41 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.39 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 95.37 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.29 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 95.26 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.2 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.18 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.08 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.02 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.02 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.91 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.88 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.86 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.84 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.84 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 94.73 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.73 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.71 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 94.61 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.5 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.49 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 94.46 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 94.44 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 94.38 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 94.36 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 94.35 | |
| KOG0022|consensus | 375 | 94.31 | ||
| PRK08223 | 287 | hypothetical protein; Validated | 94.31 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 94.27 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.27 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.24 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.21 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.17 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 94.13 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 94.1 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.04 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 94.02 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 93.93 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 93.91 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.88 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 93.84 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 93.81 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 93.79 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 93.78 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 93.71 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 93.66 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 93.64 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 93.64 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 93.6 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.6 | |
| KOG1370|consensus | 434 | 93.57 | ||
| PRK09186 | 256 | flagellin modification protein A; Provisional | 93.53 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 93.49 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 93.47 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 93.46 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 93.46 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.45 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.39 | |
| KOG1495|consensus | 332 | 93.38 | ||
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.33 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 93.32 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 93.31 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 93.3 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 93.26 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 93.23 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 93.22 | |
| KOG1502|consensus | 327 | 93.19 | ||
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 93.13 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.09 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 93.05 | |
| PRK08643 | 256 | acetoin reductase; Validated | 93.01 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 93.0 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 92.99 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 92.97 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 92.94 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 92.91 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.88 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 92.87 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 92.82 | |
| KOG1200|consensus | 256 | 92.74 | ||
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 92.65 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 92.65 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 92.65 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 92.63 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 92.58 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.57 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 92.57 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 92.55 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 92.52 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.52 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 92.47 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.46 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 92.39 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 92.37 | |
| PLN02477 | 410 | glutamate dehydrogenase | 92.36 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 92.34 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 92.32 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 92.29 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 92.28 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 92.17 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 92.17 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 92.17 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 92.17 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 92.16 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 92.1 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 92.1 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 92.1 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 92.05 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 92.04 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 92.0 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 91.94 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 91.91 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 91.89 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 91.87 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 91.85 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 91.85 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 91.84 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 91.79 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 91.78 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.77 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 91.7 | |
| KOG1209|consensus | 289 | 91.61 | ||
| PRK07877 | 722 | hypothetical protein; Provisional | 91.59 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 91.58 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 91.5 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 91.49 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 91.41 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 91.39 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 91.37 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 91.35 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 91.32 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 91.31 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 91.27 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 91.25 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 91.24 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 91.19 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.12 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 91.1 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 91.08 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 91.07 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 91.07 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 91.05 | |
| PRK05717 | 255 | oxidoreductase; Validated | 91.04 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 91.03 | |
| KOG1399|consensus | 448 | 91.0 | ||
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 90.99 | |
| KOG3007|consensus | 333 | 90.95 | ||
| KOG0023|consensus | 360 | 90.95 | ||
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 90.88 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 90.81 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.8 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 90.77 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 90.74 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 90.74 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 90.71 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.7 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 90.66 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 90.65 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 90.64 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.61 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 90.57 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.56 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.55 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 90.51 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.47 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 90.46 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 90.44 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 90.43 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function pr | 90.43 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.42 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 90.4 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 90.38 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 90.35 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 90.33 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.31 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 90.26 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 90.18 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 90.18 |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=404.10 Aligned_cols=256 Identities=36% Similarity=0.619 Sum_probs=243.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
++||||||+|+||++|+.+|+++|.+++.+|++++|++++++.+.++||+ ...++.+++.++|+|||||||+++.+++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl~ 80 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLS 80 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHHH
Confidence 36899999999999999999999977788999999999999878877988 67778889999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ ++ + .++++|||+++|++++.|+.+++ +.+ ++|+|||+|..++.|++.++.++..++ ++.+.+..
T Consensus 81 ~l-~~-~--~~~~lvISiaAGv~~~~l~~~l~-------~~~-vvR~MPNt~a~vg~g~t~i~~~~~~~~--~~~~~v~~ 146 (266)
T COG0345 81 KL-KP-L--TKDKLVISIAAGVSIETLERLLG-------GLR-VVRVMPNTPALVGAGVTAISANANVSE--EDKAFVEA 146 (266)
T ss_pred Hh-hc-c--cCCCEEEEEeCCCCHHHHHHHcC-------CCc-eEEeCCChHHHHcCcceeeecCccCCH--HHHHHHHH
Confidence 99 88 6 68999999999999999999997 467 999999999999999999999988888 99999999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
||+.+|.++|++|+++|++++++||+|+|+++++|+|.+++++.|+++++|++++.+++.|+++|+.+ ++.+
T Consensus 147 l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e--------~~~~ 218 (266)
T COG0345 147 LLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLE--------SGEH 218 (266)
T ss_pred HHHhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 8889
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
|.+|+++||||||+|++||..||+.+|+.++.+|+++++
T Consensus 219 p~~Lr~~VtSPGGtTiagl~~le~~g~~~~v~~av~aa~ 257 (266)
T COG0345 219 PAELRDQVTSPGGTTIAGLRVLEEDGFRGAVIEAVEAAY 257 (266)
T ss_pred HHHHHHhCcCCCchHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=405.31 Aligned_cols=259 Identities=30% Similarity=0.576 Sum_probs=244.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|.+||+|||+|+||.+|+++|+++|+.++++|++++|++++++.+.+++|+ ...++.+++++||+||+||||+++.+++
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl 80 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVI 80 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHH
Confidence 678999999999999999999999965667899999999999888765788 7778888899999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
+++ .+++ +++++|||+++|++++.|+++++ ...+ ++|+|||+|..+++|++.++++++.++ ++.+.++
T Consensus 81 ~~l-~~~~--~~~~lvISi~AGi~i~~l~~~l~------~~~~-vvR~MPN~~~~vg~g~t~~~~~~~~~~--~~~~~v~ 148 (272)
T PRK12491 81 NQI-KDQI--KNDVIVVTIAAGKSIKSTENEFD------RKLK-VIRVMPNTPVLVGEGMSALCFNEMVTE--KDIKEVL 148 (272)
T ss_pred HHH-HHhh--cCCcEEEEeCCCCcHHHHHHhcC------CCCc-EEEECCChHHHHcCceEEEEeCCCCCH--HHHHHHH
Confidence 999 8888 78889999999999999999997 4568 999999999999999999999888887 8999999
Q ss_pred HHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q psy316 222 KIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301 (341)
Q Consensus 222 ~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~ 301 (341)
.||+.+|.+++++|+.+|.+++++||||+|++.++++|++++++.|++++++++++.+++.|+++++.+ ++.
T Consensus 149 ~lf~~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~--------~~~ 220 (272)
T PRK12491 149 NIFNIFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLE--------TGI 220 (272)
T ss_pred HHHHcCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 889
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 302 ~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
+|++|+++|+||||+|++||+.|+++||+..+.+|+++|+
T Consensus 221 ~p~~l~~~V~sPGGtT~~gl~~le~~~~~~~~~~av~aa~ 260 (272)
T PRK12491 221 HPGELKDMVCSPGGTTIEAVATLEEKGLRTAIISAMKRCT 260 (272)
T ss_pred CHHHHHHhCCCCchHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=360.99 Aligned_cols=249 Identities=31% Similarity=0.521 Sum_probs=229.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||+|||+|+||++|+++|.+++..++.+|++++|++++. +. ...++.++++++|+||+||||+++.+++.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~ 76 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLE 76 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 6899999999999999999999865666799999987542 33 455777888899999999999999999999
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKI 223 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~l 223 (341)
+ .+++ + +++|||+++|++.+.++++++ ...+ ++|+|||+|..+++|.+.+++.++.++ ++.+.++.+
T Consensus 77 i-~~~l--~-~~~iIS~~aGi~~~~l~~~~~------~~~~-vvr~mPn~p~~~g~g~t~i~~~~~~~~--~~~~~v~~l 143 (260)
T PTZ00431 77 I-KPYL--G-SKLLISICGGLNLKTLEEMVG------VEAK-IVRVMPNTPSLVGQGSLVFCANNNVDS--TDKKKVIDI 143 (260)
T ss_pred H-Hhhc--c-CCEEEEEeCCccHHHHHHHcC------CCCe-EEEECCCchhHhcceeEEEEeCCCCCH--HHHHHHHHH
Confidence 9 8887 5 468899999999999999887 4557 899999999999999999998877777 889999999
Q ss_pred HHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCh
Q psy316 224 MEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303 (341)
Q Consensus 224 l~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p 303 (341)
|+.+|.+++++|+.+|.+++++||+|+|++.++++|++++++.|+++++|++++.+++.|+++|+.+ ++.+|
T Consensus 144 ~~~~G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~--------~~~~~ 215 (260)
T PTZ00431 144 FSACGIIQEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKA--------SDQPV 215 (260)
T ss_pred HHhCCcEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 304 AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 304 ~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
.+|+++|+||||+|++||+.||++||+..+.+|+++|+
T Consensus 216 ~~l~~~v~spgG~T~~gl~~le~~g~~~~~~~a~~aa~ 253 (260)
T PTZ00431 216 QQLKDDVCSPGGITIVGLYTLEKHAFKYTVMDAVESAC 253 (260)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999874
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=364.11 Aligned_cols=254 Identities=20% Similarity=0.330 Sum_probs=232.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCC-c-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMD-F-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g-~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+||+|||+|+||++|+++|.++|.+++++|++|+|++ ++++.+..+++ + ...++.+++.++|+||+||||+++.+++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl 81 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL 81 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence 6899999999999999999998854567899999864 44555554443 3 4567788889999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
.++ .+++ .++++|||+++|++.+.|+++++ ..+ ++|+|||+|..+++|++.+++++..++ ++.+.++
T Consensus 82 ~~l-~~~l--~~~~~ivS~~aGi~~~~l~~~~~-------~~~-vvR~MPN~~~~~g~g~t~~~~~~~~~~--~~~~~v~ 148 (277)
T PRK06928 82 KDC-APVL--TPDRHVVSIAAGVSLDDLLEITP-------GLQ-VSRLIPSLTSAVGVGTSLVAHAETVNE--ANKSRLE 148 (277)
T ss_pred HHH-Hhhc--CCCCEEEEECCCCCHHHHHHHcC-------CCC-EEEEeCccHHHHhhhcEEEecCCCCCH--HHHHHHH
Confidence 999 8888 77889999999999999999987 358 999999999999999999998888887 8999999
Q ss_pred HHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q psy316 222 KIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQ-GIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQ 300 (341)
Q Consensus 222 ~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~-Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~ 300 (341)
.||+.+|.+++++|+++|.+++++||+|+|++.++++|++++++. |++++++++++.+++.|+++|+++ ++
T Consensus 149 ~l~~~~G~~~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~--------~~ 220 (277)
T PRK06928 149 ETLSHFSHVMTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVE--------ED 220 (277)
T ss_pred HHHHhCCCEEEEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHc--------cC
Confidence 999999999999999999999999999999999999999999999 799999999999999999999988 88
Q ss_pred CChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 301 ~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
.+|++|+++|+||||+|++||+.||+ +|++.+.+++++|
T Consensus 221 ~~p~~l~~~v~spgGtT~~gl~~le~-~~~~~~~~~~~~a 259 (277)
T PRK06928 221 YTFSGTIERVATKGGITAEGAEVIQA-QLPQFFDELLDRT 259 (277)
T ss_pred CCHHHHHHhCCCCChHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999996 9999999999987
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-46 Score=347.22 Aligned_cols=257 Identities=29% Similarity=0.518 Sum_probs=237.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|+||.+|+++|+++|.+++++|++|+|++ ++++.+.+++|+ ...++.++++++|+||+||||+++.+++.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~ 83 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEALI 83 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHH
Confidence 6899999999999999999999855667999999976 467777665688 77788888999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .+.+ +++++|||+++|+++++++++++ .+.+ ++|.|||+|..++.|.+++++++..++ ++++.+++
T Consensus 84 ~l-~~~~--~~~~liIs~~aGi~~~~l~~~~~------~~~~-v~r~mPn~~~~~~~~~t~~~~~~~~~~--~~~~~v~~ 151 (279)
T PRK07679 84 PF-KEYI--HNNQLIISLLAGVSTHSIRNLLQ------KDVP-IIRAMPNTSAAILKSATAISPSKHATA--EHIQTAKA 151 (279)
T ss_pred HH-Hhhc--CCCCEEEEECCCCCHHHHHHHcC------CCCe-EEEECCCHHHHHhcccEEEeeCCCCCH--HHHHHHHH
Confidence 99 8888 78899999999999999999887 4578 999999999999999999998877777 88999999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
+|+.+|.+++++|+.++.+++++||||+|++.+++++.+++++.|++++++++++.+++.|++.++.+ ++.+
T Consensus 152 l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~--------~~~~ 223 (279)
T PRK07679 152 LFETIGLVSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKA--------SEKH 223 (279)
T ss_pred HHHhCCcEEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 7889
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
|..++++++||||+|++||+.|++++|+..+.+|+++|+
T Consensus 224 ~~~l~~~v~spgg~t~~gl~~l~~~~~~~~i~~a~~~a~ 262 (279)
T PRK07679 224 PSILRKEITSPGGTTEAGIEVLQEHRFQQALISCITQAT 262 (279)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=339.86 Aligned_cols=255 Identities=31% Similarity=0.574 Sum_probs=235.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|+||.+|+++|+++|++++.+|++| +|++++.+.+.+ +|+ ...++.++++++|+||+||||+++++++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHH
Confidence 689999999999999999999986566789999 999999888876 688 77788888999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .+.+ .++++|||+++|++.+.++++++ . .+ ++|+|||+|..++.+.+.++.+...++ +.++.+++
T Consensus 80 ~l-~~~~--~~~~~iIs~~~g~~~~~l~~~~~------~-~~-vvr~mP~~~~~~~~~~~~l~~~~~~~~--~~~~~v~~ 146 (266)
T PLN02688 80 EL-RPLL--SKDKLLVSVAAGITLADLQEWAG------G-RR-VVRVMPNTPCLVGEAASVMSLGPAATA--DDRDLVAT 146 (266)
T ss_pred HH-Hhhc--CCCCEEEEecCCCcHHHHHHHcC------C-CC-EEEECCCcHHHHhCceEEEEeCCCCCH--HHHHHHHH
Confidence 98 8887 78899999999999999998887 3 37 999999999999999999988876677 88999999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
+|+.+|.+++++|+.+|.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|++.++.+ ++.+
T Consensus 147 l~~~~G~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~--------~~~~ 218 (266)
T PLN02688 147 LFGAVGKIWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLE--------TGKH 218 (266)
T ss_pred HHHhCCCEEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCC
Confidence 99999996667999999999999999999999999999999999999999999999999999999987 8899
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
|.+++++|+||||+|++||+.|+++||++.+.+|+++++
T Consensus 219 ~~~l~~~v~spgG~t~~~l~~l~~~g~~~~~~~a~~~~~ 257 (266)
T PLN02688 219 PGQLKDMVTSPGGTTIAGVHELEKGGFRAALMNAVVAAA 257 (266)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998863
|
|
| >KOG3124|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=331.09 Aligned_cols=255 Identities=38% Similarity=0.661 Sum_probs=237.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-cCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-WPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|++||||+|+|..++++++..+|...+++++.+..+...... ++. .|+ .+.++.+.++.+|++|++|||+.+.+++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~-~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEA-LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhc-CCceeeechHHHHhhccceeEeecchhHHHHhh
Confidence 589999999999999999999999888899998886555555 555 788 66666889999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .+.+ ..+++|+|+.+|++++.++.+++ ...+ ++|+|||+|..+++|.+++..+...+. ++.+.+++
T Consensus 80 ~~-~~~~--~~~~iivS~aaG~tl~~l~~~l~------~~~r-viRvmpNtp~~v~eg~sv~~~g~~~~~--~D~~l~~~ 147 (267)
T KOG3124|consen 80 EI-KPKV--SKGKIIVSVAAGKTLSSLESKLS------PPTR-VIRVMPNTPSVVGEGASVYAIGCHATN--EDLELVEE 147 (267)
T ss_pred cC-cccc--ccceEEEEEeecccHHHHHHhcC------CCCc-eEEecCCChhhhhcCcEEEeeCCCcch--hhHHHHHH
Confidence 99 7766 68899999999999999999998 5678 999999999999999998888888887 88999999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
+|+.+|.+..++|+.+|++|+++||||+|.+.++|+|+|.+++.|+|++.++++..|++.|+++|+.+ ++.|
T Consensus 148 ll~~vG~~~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~--------s~qH 219 (267)
T KOG3124|consen 148 LLSAVGLCEEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLA--------SGQH 219 (267)
T ss_pred HHHhcCcceeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHh--------ccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
|.+|++.||||||+|+.||+.||+++||..+++|+++|
T Consensus 220 P~~Lkd~V~SPgG~TI~glh~LE~ggfRs~linaVeaa 257 (267)
T KOG3124|consen 220 PAQLKDDVCSPGGTTIYGLHALEKGGFRSGLINAVEAA 257 (267)
T ss_pred cHHHhCCCCCCCcchHHHHHHHHhCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999987
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=336.91 Aligned_cols=237 Identities=36% Similarity=0.618 Sum_probs=221.8
Q ss_pred hcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCC
Q psy316 85 RTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 85 ~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++|.+++++|++++|++++++.+.+++|+ ...++.++++++|+||+||||+++.+++.++ .+.+ .++++|||+++|
T Consensus 3 ~~~~~~~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l-~~~~--~~~~~ivS~~ag 79 (245)
T TIGR00112 3 KAGALAAYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSEL-KSEK--GKDKLLISIAAG 79 (245)
T ss_pred CCCCCCCCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHH-hhhc--cCCCEEEEecCC
Confidence 45556788999999999999988777888 7778888999999999999999999999999 8777 678899999999
Q ss_pred CCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchhHHHH
Q psy316 164 VDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGA 243 (341)
Q Consensus 164 i~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d~~~a 243 (341)
++++.|+++++ .+.+ ++|+|||+|..+++|++.+++++..++ ++.+.+++||+.+|.+++++|+.+|.+++
T Consensus 80 i~~~~l~~~~~------~~~~-ivR~mPn~~~~~~~g~t~~~~~~~~~~--~~~~~v~~lf~~~G~~~~v~E~~~~~~ta 150 (245)
T TIGR00112 80 VTLEKLSQLLG------GTRR-VVRVMPNTPAKVGAGVTAIAANANVSE--EDRALVLALFKAVGEVVELPEALMDAVTA 150 (245)
T ss_pred CCHHHHHHHcC------CCCe-EEEECCChHHHHhCCeEEEecCCCCCH--HHHHHHHHHHHhCCCEEEECHHHcchHHh
Confidence 99999999998 4568 999999999999999999999888877 88999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHH
Q psy316 244 IAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHA 323 (341)
Q Consensus 244 l~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~ 323 (341)
++||||+|++.++++|.+++++.|+++++|++++.+++.|+++++++ ++.+|++|+++|+||||+|++||+.
T Consensus 151 lsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~--------~~~~~~~l~~~v~spgGtT~~gl~~ 222 (245)
T TIGR00112 151 LSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEE--------SGEHPALLKDQVTSPGGTTIAGLAV 222 (245)
T ss_pred hccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988 8899999999999999999999999
Q ss_pred HHhCCchHHHHHHHHhhC
Q psy316 324 LEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 324 l~~~~~~~~~~~a~~~a~ 341 (341)
|+++||++.+.+|+++|+
T Consensus 223 Le~~~~~~~~~~a~~aa~ 240 (245)
T TIGR00112 223 LEEKGVRGAVIEAVEAAV 240 (245)
T ss_pred HHHCChHHHHHHHHHHHH
Confidence 999999999999998873
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=333.95 Aligned_cols=253 Identities=21% Similarity=0.401 Sum_probs=231.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-Cc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-DF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|+|+|||+|+||++|+++|.++|++++++|++|+|++++++.+.+++ |+ ...++.+++.++|+||+||||+++.++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~ 80 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ 80 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence 47999999999999999999998555668999999999888877655 66 66788888899999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .+++ +++++|||+++|++.+.++++++ .. ++|+|||++...+.|.+.++.++..++ +..+.+++
T Consensus 81 ~l-~~~l--~~~~~iis~~ag~~~~~L~~~~~--------~~-~~r~~p~~~~~~~~G~t~~~~g~~~~~--~~~~~~~~ 146 (273)
T PRK07680 81 KL-APHL--TDEHCLVSITSPISVEQLETLVP--------CQ-VARIIPSITNRALSGASLFTFGSRCSE--EDQQKLER 146 (273)
T ss_pred HH-Hhhc--CCCCEEEEECCCCCHHHHHHHcC--------CC-EEEECCChHHHHhhccEEEeeCCCCCH--HHHHHHHH
Confidence 99 8888 78899999999999999999887 25 899999999888899988777766666 78899999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVK-QGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~-~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~ 301 (341)
+|+.+|..++++|+.++.+++++||+|+|++.++++|.+++++ .|++++++++++.+++.|+++++.+ ++.
T Consensus 147 ll~~~G~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~--------~~~ 218 (273)
T PRK07680 147 LFSNISTPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEK--------GLY 218 (273)
T ss_pred HHHcCCCEEEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh--------cCC
Confidence 9999999899999999999999999999999999999999987 8999999999999999999999988 889
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 302 HPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 302 ~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
+|++|+++|+||||+|++||+.||+ +|++.+.+|++++
T Consensus 219 ~~~~l~~~v~spgG~T~~gl~~le~-~~~~~~~~~~~~~ 256 (273)
T PRK07680 219 TLPTLQEKVCVKGGITGEGIKVLEE-EVGDMFHRLFQRT 256 (273)
T ss_pred CHHHHHHhCCCCChhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999 7999999999876
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=329.01 Aligned_cols=255 Identities=35% Similarity=0.610 Sum_probs=234.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|+|||+|||+|+||++++.+|.++|. .+++|++|+|++++++.+.+++|+ ...++.+++.++|+||+||||+++.+++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~-~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~ 79 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGV-PAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVL 79 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCC-CcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHH
Confidence 67899999999999999999999883 446899999999998888775677 6677888889999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
+++ .+++ +++|||+++|++.+.++++++ .+.+ ++|+|||+|..++.|.+.+++++..++ +..+.++
T Consensus 80 ~~l-~~~~----~~~vvs~~~gi~~~~l~~~~~------~~~~-iv~~~P~~p~~~~~~~~~i~~~~~~~~--~~~~~v~ 145 (267)
T PRK11880 80 SEL-KGQL----DKLVVSIAAGVTLARLERLLG------ADLP-VVRAMPNTPALVGAGMTALTANALVSA--EDRELVE 145 (267)
T ss_pred HHH-Hhhc----CCEEEEecCCCCHHHHHHhcC------CCCc-EEEecCCchHHHcCceEEEecCCCCCH--HHHHHHH
Confidence 999 7765 479999999999999998887 4568 999999999999999998888877777 8899999
Q ss_pred HHHHhcCCeEEc-CCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q psy316 222 KIMEQGGIVEII-PESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQ 300 (341)
Q Consensus 222 ~ll~~lG~~~~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~ 300 (341)
.+|+.+|..+++ +|+.+|.+++++||+|+|++.+++++.+++.+.|++++++++++.+++.|+++++.+ ++
T Consensus 146 ~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~--------~~ 217 (267)
T PRK11880 146 NLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLE--------SG 217 (267)
T ss_pred HHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cC
Confidence 999999998888 499999999999999999999999999999999999999999999999999999987 88
Q ss_pred CChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 301 ~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
.+|++++++|+||||+|++||+.|+++|++..+.+|++++
T Consensus 218 ~~~~~l~~~v~tpgG~t~~gl~~l~~~g~~~~~~~a~~~~ 257 (267)
T PRK11880 218 EHPAELRDNVTSPGGTTIAALRVLEEKGLRAAVIEAVQAA 257 (267)
T ss_pred CCHHHHHHhCCCCcHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=313.06 Aligned_cols=240 Identities=23% Similarity=0.413 Sum_probs=216.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
.+||+|||+|+||.+++.+|.++|.....++++++| ++++++.+.+++++ .+.++.++++++|+||+|+||+.+.+++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~ 83 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELL 83 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHHHHH
Confidence 468999999999999999999887422334888887 57888888776777 6678888899999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
+++ .+++ + +++|||+++|++++.|+++++ .+.+ ++|+|||++..++.|.+.++.....++ +..+.++
T Consensus 84 ~~l-~~~~--~-~~~vis~~~gi~~~~l~~~~~------~~~~-v~r~~Pn~a~~v~~g~~~~~~~~~~~~--~~~~~v~ 150 (245)
T PRK07634 84 AEL-SPLL--S-NQLVVTVAAGIGPSYLEERLP------KGTP-VAWIMPNTAAEIGKSISLYTMGQSVNE--THKETLQ 150 (245)
T ss_pred HHH-Hhhc--c-CCEEEEECCCCCHHHHHHHcC------CCCe-EEEECCcHHHHHhcCCeEEeeCCCCCH--HHHHHHH
Confidence 999 8877 4 679999999999999999998 4567 899999999999999988887776776 8899999
Q ss_pred HHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q psy316 222 KIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301 (341)
Q Consensus 222 ~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~ 301 (341)
.+|+.+|.+++++|+.++.+++++||+|+|++.+++++.+++++.|++++++++++.+++.|+++++++ +.
T Consensus 151 ~lf~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~---------~~ 221 (245)
T PRK07634 151 LILKGIGTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ---------TQ 221 (245)
T ss_pred HHHHhCCCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999864 47
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHH
Q psy316 302 HPAVIKDQICSPGGSTIAGIHALE 325 (341)
Q Consensus 302 ~p~~l~~~v~tpgG~t~~~l~~l~ 325 (341)
+|++|+++|+||||+|++||+.|+
T Consensus 222 ~~~~l~~~v~spgG~T~~gl~~l~ 245 (245)
T PRK07634 222 DPANLREQVTTPGGSTAEGLKALY 245 (245)
T ss_pred CHHHHHHhCCCCChHHHHHHHHhC
Confidence 999999999999999999999985
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=313.22 Aligned_cols=246 Identities=20% Similarity=0.339 Sum_probs=220.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-Cc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-DF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||||||+|+||++|+++|.++|+ ....+.+|+|++++++.+.+++ ++ .+.++.++++++|+||+||||+++.++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~-~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPA-DVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-ChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHH
Confidence 489999999999999999999884 3456789999999988887755 45 66788888899999999999999999998
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ . + .++++|||+++|++.+.++++++ ...+ ++|+|||+|...+.|.+.++++ . +.+++
T Consensus 80 ~l-~--~--~~~~~vis~~ag~~~~~l~~~~~------~~~~-~~r~~P~~~~a~~~g~t~~~~~-------~--~~~~~ 138 (258)
T PRK06476 80 AL-R--F--RPGQTVISVIAATDRAALLEWIG------HDVK-LVRAIPLPFVAERKGVTAIYPP-------D--PFVAA 138 (258)
T ss_pred Hh-c--c--CCCCEEEEECCCCCHHHHHHHhC------CCCC-EEEECCCChhhhCCCCeEecCC-------H--HHHHH
Confidence 87 4 4 57889999999999999999987 4567 8999999999999998887653 1 47899
Q ss_pred HHHhcCCeEEc-CCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhhhhhccccCC
Q psy316 223 IMEQGGIVEII-PESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQL-VHKDLLRMDHAAQ 300 (341)
Q Consensus 223 ll~~lG~~~~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l-~~~~~~~~~~~~~ 300 (341)
+|+.+|..+++ +|+.+|.+++++ ++|+|++.+++++.+++++.|++++++++++.+++.|+++| +.+ ++
T Consensus 139 l~~~lG~~~~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~--------~~ 209 (258)
T PRK06476 139 LFDALGTAVECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRS--------TK 209 (258)
T ss_pred HHHhcCCcEEECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc--------CC
Confidence 99999998877 688999999986 68999999999999999999999999999999999999999 566 78
Q ss_pred CChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 301 ~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
.+|++|+++|+||||+|++||+.||++||++.+.+|+++|+
T Consensus 210 ~~~~~l~~~v~spgGtT~~gl~~le~~~~~~~~~~a~~aa~ 250 (258)
T PRK06476 210 TDFSALSREFSTKGGLNEQVLNDFSRQGGYAALTDALDRVL 250 (258)
T ss_pred CCHHHHHHhCCCCCchHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999874
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-31 Score=252.36 Aligned_cols=219 Identities=16% Similarity=0.185 Sum_probs=187.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEc-CChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA-PSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~-r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
.+||+|||+|+||.+++++|.++|+ +|++++ ++.++.+.+.+ .|+...++.+++++||+|+++|||+ +...++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~----~Viv~~~~~~~~~~~a~~-~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~ 77 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGL----NVIVGLRKGGASWKKATE-DGFKVGTVEEAIPQADLIMNLLPDEVQHEVYE 77 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCC----eEEEEECcChhhHHHHHH-CCCEECCHHHHHhcCCEEEEeCCcHhHHHHHH
Confidence 4789999999999999999999995 676654 44455665554 5773335788899999999999998 777777
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh-h------cCceEEEE-eCCCCCcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK-Y------GKGITGMC-HDVHLDKE 213 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-v------~~g~~~l~-~~~~~~~~ 213 (341)
+++ .+.+ +++ .+||+++|+++..++..++ .+.+ |+|+|||+|.. + |.|++.++ ...+.+.
T Consensus 78 ~ei-~~~l--~~g-~iVs~aaG~~i~~~~~~~~------~~~~-VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~- 145 (314)
T TIGR00465 78 AEI-QPLL--KEG-KTLGFSHGFNIHFVQIVPP------KDVD-VVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTG- 145 (314)
T ss_pred HHH-HhhC--CCC-cEEEEeCCccHhhccccCC------CCCc-EEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCH-
Confidence 788 8888 666 5899999999999988887 5678 99999999998 5 99998886 6666777
Q ss_pred HHHHHHHHHHHHhcCCe-------E---EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV-------E---IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKG 283 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~-------~---~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~g 283 (341)
++.+.+..+|+.+|.. . +++|+++|..++++||+|+|++.++++| ++.|++++.|+.++.+++.|
T Consensus 146 -~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal----v~~G~~~e~A~~~~~~~~~g 220 (314)
T TIGR00465 146 -EAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL----VEAGYQPELAYFETVHELKL 220 (314)
T ss_pred -HHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH----HHcCCCHHHHHHHHHHHHHH
Confidence 8899999999999988 5 6688999999999999999999998887 68999999999999999999
Q ss_pred HHHHHHhhhhhccccCCCChHHHHHhcCCCc
Q psy316 284 SGQLVHKDLLRMDHAAQAHPAVIKDQICSPG 314 (341)
Q Consensus 284 s~~l~~~~~~~~~~~~~~~p~~l~~~v~tpg 314 (341)
++.|+.+ ++. ..|++.|+|+.
T Consensus 221 ~~~l~~e--------~g~--~~l~~~Vssta 241 (314)
T TIGR00465 221 IVDLIYE--------GGI--TGMRDRISNTA 241 (314)
T ss_pred HHHHHHH--------hcH--HHHHHHcCCHH
Confidence 9999988 665 69999999874
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=233.83 Aligned_cols=239 Identities=12% Similarity=0.154 Sum_probs=190.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
||.+||+|||+|+||.+++++|.++|+ .++|++|+|++++++.+.+ +|+ ...+..+++.++|+||+|||++.+.
T Consensus 1 ~~~~~I~IIG~G~mG~ala~~l~~~G~--~~~V~~~d~~~~~~~~a~~-~g~~~~~~~~~~~~~~~aDvVilavp~~~~~ 77 (735)
T PRK14806 1 PLFGRVVVIGLGLIGGSFAKALRERGL--AREVVAVDRRAKSLELAVS-LGVIDRGEEDLAEAVSGADVIVLAVPVLAME 77 (735)
T ss_pred CCCcEEEEEeeCHHHHHHHHHHHhcCC--CCEEEEEECChhHHHHHHH-CCCCCcccCCHHHHhcCCCEEEECCCHHHHH
Confidence 356799999999999999999999884 3479999999988776655 565 2446677788999999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhccccCCCCCCCCeEEEEcCCchhhhc--------------Cce
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG--------------KGI 201 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~--------------~g~ 201 (341)
++++++ .+++ +++. +|+.+++++ .+.+++.++ . . .+|+|||+|.... .+.
T Consensus 78 ~vl~~l-~~~~--~~~~-ii~d~~svk~~~~~~l~~~~~------~--~-~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~ 144 (735)
T PRK14806 78 KVLADL-KPLL--SEHA-IVTDVGSTKGNVVDAARAVFG------E--L-PAGFVPGHPIAGSEKSGVHAANADLFRNHK 144 (735)
T ss_pred HHHHHH-HHhc--CCCc-EEEEcCCCchHHHHHHHHhcc------c--c-CCeEEecCCcCcCCcchhhhhhhHHhCCCe
Confidence 999999 8887 6664 555557777 566666665 2 3 5789999996522 223
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCA-YLFLVMDAMADGAVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa-~~~~~~eal~ea~~~~Gl~~~~a~~lv~~ 279 (341)
+++++....++ +..+.++++|+.+|..+ +++++.||.++++++|+|+ |.+.+++++.+ .|.. ..+.++..+
T Consensus 145 ~~~~~~~~~~~--~~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~----~~~~-~~~~~~a~~ 217 (735)
T PRK14806 145 VILTPLAETDP--AALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLAN----REDN-LDIFRYAAG 217 (735)
T ss_pred EEEECCCCCCH--HHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhh----cCCh-hHHHhhhcc
Confidence 46677665666 78899999999999865 5699999999999999999 67777777654 3332 357789999
Q ss_pred HHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH
Q psy316 280 LLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS 334 (341)
Q Consensus 280 ~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~ 334 (341)
+++++.+++. .+|+.|.+.+++|+|+|+++|+.|++ .+|+..+.
T Consensus 218 ~f~~~tRia~-----------~~p~~~~di~~~n~~~~~~~l~~~~~~l~~~~~~l~ 263 (735)
T PRK14806 218 GFRDFTRIAA-----------SDPVMWHDIFLANKEAVLRALDHFRDDLDALRAAIE 263 (735)
T ss_pred chhccccccc-----------CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988774 48999999999999999999999998 67777765
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=204.34 Aligned_cols=228 Identities=14% Similarity=0.148 Sum_probs=174.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-CCCc---cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-PMDF---ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
++|+|||+|+||++|+++|.++|+ ++.+|+++++..+.... ..++ ...++.+++++||+||+|||++.+.++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~----~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~v 76 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP----DVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAAL 76 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC----CeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHH
Confidence 479999999999999999999985 77788776654333222 1343 235667788999999999999999999
Q ss_pred HHHhhhc-ccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEEcCCch-----------hhhcCceEEEE
Q psy316 141 IQGLVND-KVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRVMPNTA-----------MKYGKGITGMC 205 (341)
Q Consensus 141 l~~i~~~-~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~mpn~p-----------~~v~~g~~~l~ 205 (341)
+.++ .+ .+ +++ .+|+.+++++...+ ++.++ ...+ ++..+|... ..+....++++
T Consensus 77 l~~l-~~~~l--~~~-~ivtDv~SvK~~i~~~~~~~~~------~~~~-~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~ 145 (359)
T PRK06545 77 LAEL-ADLEL--KPG-VIVTDVGSVKGAILAEAEALLG------DLIR-FVGGHPMAGSHKSGVAAARADLFENAPWVLT 145 (359)
T ss_pred HHHH-hhcCC--CCC-cEEEeCccccHHHHHHHHHhcC------CCCe-EEeeCCcCcCchhhHHHhcHHHHCCCcEEEe
Confidence 9999 76 36 566 55556688876544 34433 3345 666655211 11233456778
Q ss_pred eCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy316 206 HDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 206 ~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
+.+..++ +.++.++++|+.+|..+ +++++.||.++++++++|+|++. +| +...+.+.+.+..++.++|+++
T Consensus 146 ~~~~~~~--~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~---al---~~~~~~~~~~~~~la~~gfrd~ 217 (359)
T PRK06545 146 PDDHTDP--DAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS---SL---AARLAGEHPLALRLAAGGFRDI 217 (359)
T ss_pred cCCCCCH--HHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH---HH---HHhhccCchHHHhhhcccccCC
Confidence 7766666 88999999999999876 57999999999999999998885 34 3456777888899999999999
Q ss_pred HHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 285 GQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+++. .+|.+|++.+++|++.+.+.|..+.+
T Consensus 218 tRia~-----------~~p~~w~di~~~N~~~~~~~l~~~~~ 248 (359)
T PRK06545 218 TRIAS-----------SDPGMWRDILESNAEALLDALDEWIE 248 (359)
T ss_pred ccccC-----------CCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88774 48999999999999999988888876
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=187.13 Aligned_cols=230 Identities=10% Similarity=0.065 Sum_probs=170.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|.||.+|+..|.++|+ +|++|+|++++++.+.+ .|. ...+..+.+.++|+||+|+|++.+.++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~----~V~~~d~~~~~~~~a~~-~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH----TVYGVSRRESTCERAIE-RGLVDEASTDLSLLKDCDLVILALPIGLLLPPSE 75 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-CCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHH
Confidence 589999999999999999999984 89999999988887766 354 33334457889999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh-----------hcCceEEEEeCCCCC
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK-----------YGKGITGMCHDVHLD 211 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-----------v~~g~~~l~~~~~~~ 211 (341)
++ .+.+ +++.+| +.+++++.+.++.... ...+ +++.+|..... ......++++.+..+
T Consensus 76 ~l-~~~l--~~~~ii-~d~~Svk~~~~~~~~~------~~~~-~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~ 144 (279)
T PRK07417 76 QL-IPAL--PPEAIV-TDVGSVKAPIVEAWEK------LHPR-FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD 144 (279)
T ss_pred HH-HHhC--CCCcEE-EeCcchHHHHHHHHHH------hhCC-ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC
Confidence 99 8888 666554 5567888777766554 2235 77777632111 122244566666666
Q ss_pred ccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHH-cCCCH-HHHHHHHHHHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVK-QGIPR-DMALRIGAQLLKGSGQLV 288 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~-~Gl~~-~~a~~lv~~~~~gs~~l~ 288 (341)
+ +.++.++++++.+|..+ +++++.||..+++++++|+|++.. ++..... ..-+. +.+..+...+|+.+.++.
T Consensus 145 ~--~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~---l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia 219 (279)
T PRK07417 145 L--NALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAA---LIQTCGTEKDPSVLKLAQNLASSGFADTSRVG 219 (279)
T ss_pred H--HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHH---HHHHHhhcccchhhHHhhhhccCccccccccc
Confidence 6 88899999999999875 579999999999999999987753 3332211 11111 223567788888777765
Q ss_pred HhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 289 HKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 289 ~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
. .+|+.|.+.+.++.....+.|..+++
T Consensus 220 ~-----------~~p~~w~~i~~~N~~~i~~~l~~~~~ 246 (279)
T PRK07417 220 G-----------GNPELGVMMAEYNRAALLRSLASYRQ 246 (279)
T ss_pred C-----------CChHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3 48999999999998877777777766
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=183.77 Aligned_cols=230 Identities=15% Similarity=0.203 Sum_probs=173.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|+||++|+++|.++|+ ..+|++|+|++++.+.+.+ .|+ ...+..++. ++|+||+|||++.+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~--~~~v~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~ 76 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL--ISKVYGYDHNELHLKKALE-LGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP 76 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC--CCEEEEEcCCHHHHHHHHH-CCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH
Confidence 489999999999999999999984 3479999999998887765 565 344666655 5999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCc------hhh----hcCc-eEEEEeCCCCC
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNT------AMK----YGKG-ITGMCHDVHLD 211 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~------p~~----v~~g-~~~l~~~~~~~ 211 (341)
++ .+ + +++++|+++ +++ ...+.+.+... ...+ +++.||+. |.. ..+| ..++++.+..+
T Consensus 77 ~l-~~-l--~~~~iv~d~-gs~-k~~i~~~~~~~----~~~~-~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 77 KL-LD-I--KENTTIIDL-GST-KAKIIESVPKH----IRKN-FIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HH-hc-c--CCCCEEEEC-ccc-hHHHHHHHHHh----cCCC-EEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 99 88 8 788888874 433 44344433310 1246 88999974 221 1244 44566665555
Q ss_pred ccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 212 KESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
+ +.++.++++|+.+|.. ++++++.||..++++++.|++++. ++++... .+.+.+....+...+++.+.++..
T Consensus 146 ~--~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~---~l~~~~~-~~~~~~~~~~~~~~gfrd~tria~- 218 (275)
T PRK08507 146 E--KHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHIISF---ALANTVL-KEEDERNIFDLAGGGFRSMSRLAK- 218 (275)
T ss_pred H--HHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHH---HHHHHHH-hcCChHHHHhhcccchhhhhhccc-
Confidence 5 7889999999999965 567999999999999998875444 5555443 466777778889989998877653
Q ss_pred hhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 291 DLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 291 ~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+|..|.+.+.++.....+.|+.|.+
T Consensus 219 ----------~~p~l~~~i~~~N~~~~~~~l~~~~~ 244 (275)
T PRK08507 219 ----------SSPAMWSDIFKQNKENVLEAIDEFIK 244 (275)
T ss_pred ----------CCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 48999999999998888788777765
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=195.47 Aligned_cols=234 Identities=12% Similarity=0.189 Sum_probs=181.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+||| +|.||.++++.|.++|+ +|++|+|++++...++.++|+ ...+..+.+.++|+||+|+|++.+.+++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~----~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF----EVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIK 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC----EEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHH
Confidence 5899997 89999999999999984 899999998887666555677 66677888999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecC--CCCHHHHHHhccccCCCCCCCCeEEEEcCC----chhhhcCceEEEEeCCCCCccHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLV--GVDLETLKKKLSVLVPNPNDAPTIIRVMPN----TAMKYGKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~a--gi~~~~l~~~l~~~~~~~~~~~~vvr~mpn----~p~~v~~g~~~l~~~~~~~~~~~~ 216 (341)
++ .+.+ +++++|+++++ +...+.+++.++ .+.+ +++.||. .+...++ ..++++++..++ +.
T Consensus 77 ~l-~~~l--~~~~iViDvsSvK~~~~~~l~~~~~------~~~~-~V~~HPmaGp~~~~~~g~-~~il~p~~~~~~--~~ 143 (437)
T PRK08655 77 EV-APHV--KEGSLLMDVTSVKERPVEAMEEYAP------EGVE-ILPTHPMFGPRTPSLKGQ-VVILTPTEKRSN--PW 143 (437)
T ss_pred HH-HhhC--CCCCEEEEcccccHHHHHHHHHhcC------CCCE-EEEcCCCCCCCCcccCCC-EEEEecCCCCCH--HH
Confidence 99 8888 88999998865 223456666666 4556 7888753 3332233 345666654555 78
Q ss_pred HHHHHHHHHhcCCeEE-cCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy316 217 LNMAIKIMEQGGIVEI-IPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRM 295 (341)
Q Consensus 217 ~~~v~~ll~~lG~~~~-v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~ 295 (341)
.+.++++|+.+|..++ ++++.||.+++++++.|++++. +++.++.+.|++.++++.+...+++....++.+ .
T Consensus 144 ~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~---al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tR-I--- 216 (437)
T PRK08655 144 FDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYI---SIASTLKRLGVDIKESRKFASPIYELMIDIIGR-I--- 216 (437)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHH-H---
Confidence 8999999999998765 5888999999999999987766 456666778999999999999999886333222 1
Q ss_pred cccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 296 DHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 296 ~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+.+|..|.+...++. ...+.+..|.+
T Consensus 217 ---a~~~p~lw~dI~~~N~-~~~~~l~~~~~ 243 (437)
T PRK08655 217 ---LGQNPYLYASIQMNNP-QIPEIHETFIK 243 (437)
T ss_pred ---hcCCHHHHHHHHHhCH-HHHHHHHHHHH
Confidence 2358999999988886 56677766655
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=181.00 Aligned_cols=227 Identities=18% Similarity=0.170 Sum_probs=162.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
+||+|||+|+||..||++|+++|+ ++++|||++++ .+.+.+ .|. ...++.+++..+|+||+||++ .++++|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~----~v~v~~r~~~ka~~~~~~-~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~ 75 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH----EVTVYNRTPEKAAELLAA-AGATVAASPAEAAAEADVVITMLPDDAAVRAVL 75 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC----EEEEEeCChhhhhHHHHH-cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHH
Confidence 589999999999999999999995 99999999999 444444 688 788889999999999999985 7899999
Q ss_pred HH---hhhcccccCCCcEEEEecCCCCHHHHH---HhccccCCCCCCCCeEEEE--cCCchhhhcCceEEEEeCCCCCcc
Q psy316 142 QG---LVNDKVTLNSSRCIISMLVGVDLETLK---KKLSVLVPNPNDAPTIIRV--MPNTAMKYGKGITGMCHDVHLDKE 213 (341)
Q Consensus 142 ~~---i~~~~l~~~~~~iIVs~~agi~~~~l~---~~l~~~~~~~~~~~~vvr~--mpn~p~~v~~g~~~l~~~~~~~~~ 213 (341)
.+ + ...+ ++++++|++ ++++++.-+ +.+.. .+.. ++.+ +...+.......++++.++ +
T Consensus 76 ~g~~g~-~~~~--~~G~i~IDm-STisp~~a~~~a~~~~~-----~G~~-~lDAPVsGg~~~A~~GtLtimvGG~---~- 141 (286)
T COG2084 76 FGENGL-LEGL--KPGAIVIDM-STISPETARELAAALAA-----KGLE-FLDAPVSGGVPGAAAGTLTIMVGGD---A- 141 (286)
T ss_pred hCccch-hhcC--CCCCEEEEC-CCCCHHHHHHHHHHHHh-----cCCc-EEecCccCCchhhhhCceEEEeCCC---H-
Confidence 53 5 5556 789999987 556665433 33321 2223 3221 1122222222356677665 4
Q ss_pred HHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVH 289 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~ 289 (341)
+.+++++++|+.+|.. +++++......+.++. +.++...+.++.|+ +.++|++++...+++..+..++..+-.
T Consensus 142 -~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~n--n~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~ 218 (286)
T COG2084 142 -EAFERAKPVLEAMGKNIVHVGPVGAGQAAKLAN--NILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILEN 218 (286)
T ss_pred -HHHHHHHHHHHHhcCceEEECCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHh
Confidence 8999999999999985 5677776666666543 45556666666665 569999999999999998777755433
Q ss_pred hhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHH
Q psy316 290 KDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALE 325 (341)
Q Consensus 290 ~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~ 325 (341)
+ . ..+.+.-++|++.....+++|.
T Consensus 219 ~-----------~-~~m~~~~~~p~F~v~~~~KDl~ 242 (286)
T COG2084 219 Y-----------G-PRMLEGDFSPGFAVDLMLKDLG 242 (286)
T ss_pred h-----------c-chhhcCCCCcchhHHHHHHHHH
Confidence 2 2 3334444778777777777664
|
|
| >PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=161.98 Aligned_cols=101 Identities=39% Similarity=0.694 Sum_probs=93.3
Q ss_pred cCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCC
Q psy316 233 IPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICS 312 (341)
Q Consensus 233 v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~t 312 (341)
|+|+++|.+++++||+|+|++.++++|++++++.|++++++++++.+++.|++.++.+ ++.+|.+|++.|+|
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~--------~~~~~~~l~~~v~t 72 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEE--------SGRSPAELRDEVTT 72 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH--------CSS-HHHHHHHHS-
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHc--------cCCCHHHHhhhccC
Confidence 5789999999999999999999999999999999999999999999999999999998 88999999999999
Q ss_pred CchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 313 PGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 313 pgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
|||+|++||+.|++++|++.+.+|+++++
T Consensus 73 PgG~T~~gl~~L~~~~~~~~~~~a~~aa~ 101 (107)
T PF14748_consen 73 PGGTTIAGLEVLEKGGLRAAIMEALEAAV 101 (107)
T ss_dssp TTSHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999873
|
... |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=182.64 Aligned_cols=242 Identities=11% Similarity=0.152 Sum_probs=172.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
+.+||+|||+|.||.++++.|.+.|+ .++|++|+|++++.+.+.+ .|+ ...+..+.+.++|+||+|+|+..+.+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~--~~~V~~~dr~~~~~~~a~~-~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~ 81 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGL--AGEIVGADRSAETRARARE-LGLGDRVTTSAAEAVKGADLVILCVPVGASGA 81 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCC--CcEEEEEECCHHHHHHHHh-CCCCceecCCHHHHhcCCCEEEECCCHHHHHH
Confidence 45799999999999999999999884 3489999999988877665 564 34566778899999999999999999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh--------------cCceEEEE
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY--------------GKGITGMC 205 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v--------------~~g~~~l~ 205 (341)
++.++ .+.+ +++.+|++ .++++.+.++..... ... .+++++++|... .....+++
T Consensus 82 v~~~l-~~~l--~~~~iv~d-vgs~k~~~~~~~~~~------~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~ 150 (307)
T PRK07502 82 VAAEI-APHL--KPGAIVTD-VGSVKASVIAAMAPH------LPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILT 150 (307)
T ss_pred HHHHH-HhhC--CCCCEEEe-CccchHHHHHHHHHh------CCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEe
Confidence 99998 8888 77776665 477776555443321 011 234555555431 11223455
Q ss_pred eCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy316 206 HDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 206 ~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
+....++ +.++.++++|+.+|..+ +++++.||.++|+++++|++++..+-..... ....+.+....+...+|+..
T Consensus 151 ~~~~~~~--~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~--~~~~~~~~~~~~~~~gfrd~ 226 (307)
T PRK07502 151 PPEGTDP--AAVARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADD--LERVTESEVIKYSASGFRDF 226 (307)
T ss_pred CCCCCCH--HHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhh--hcccchHHHHHhcccccccc
Confidence 5544455 78899999999999875 4599999999999999999988764322211 12233344556777777776
Q ss_pred HHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHH
Q psy316 285 GQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPF 333 (341)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~ 333 (341)
.++. ..+|+.|.+.+.++.....+.|+.|++ ..|+..+
T Consensus 227 tRia-----------~~~~~~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l 266 (307)
T PRK07502 227 TRIA-----------ASDPTMWRDVFLHNKDAVLEMLGRFTEDLAALQRAI 266 (307)
T ss_pred cccc-----------cCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 248999999999998888788887776 2344444
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-20 Score=174.73 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=153.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH-
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI- 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl- 141 (341)
..++|+|||+|+||.+++++|.++|+ +|++++|+..+......+.|+...+..++++.||+|+++||+....+++
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~----~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~ 91 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGV----DVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYE 91 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCC----EEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHH
Confidence 35789999999999999999999995 8888877654443333335773338889999999999999999889998
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh-------hcCceEEEE-eCCCCCcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK-------YGKGITGMC-HDVHLDKE 213 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-------v~~g~~~l~-~~~~~~~~ 213 (341)
+++ .+.+ +++++| ++++|+++..++...+ .+.+ ++++|||+|.. +|+|++.++ ...+.+.
T Consensus 92 ~~I-~~~L--k~g~iL-~~a~G~~i~~~~~~p~------~~~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~- 159 (330)
T PRK05479 92 EEI-EPNL--KEGAAL-AFAHGFNIHFGQIVPP------ADVD-VIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASG- 159 (330)
T ss_pred HHH-HhcC--CCCCEE-EECCCCChhhceeccC------CCCc-EEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCH-
Confidence 778 8888 788877 7889999998877766 5678 99999999998 899999888 5555666
Q ss_pred HHHHHHHHHHHHhcCCeE------Ec-CCC---chhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIVE------II-PES---MMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKG 283 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~~------~v-~e~---~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~g 283 (341)
++.+.+..++..+|... .+ .|. +++.-..++ .++..++.+-.+..++.|++++.|+.=..+=+.-
T Consensus 160 -~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~----gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e~k~ 234 (330)
T PRK05479 160 -NAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLC----GGLTELIKAGFETLVEAGYQPEMAYFECLHELKL 234 (330)
T ss_pred -HHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHh----hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 88999999999999642 23 232 344433333 2444555566666789999999876543333344
Q ss_pred HHHHH
Q psy316 284 SGQLV 288 (341)
Q Consensus 284 s~~l~ 288 (341)
...++
T Consensus 235 i~dl~ 239 (330)
T PRK05479 235 IVDLI 239 (330)
T ss_pred HHHHH
Confidence 44444
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=168.76 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=171.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHh-hcCCEEEEeeChHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRII-KEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~-~~aDvIilaV~~~~v~~v 140 (341)
..++|+|||+|+||.++++.|.+.|+ +|++++|++.. +.. .++|+ ...+..+++ .++|+||+|||++.+.++
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~----~V~~~d~~~~~-~~a-~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~v 108 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGH----TVLATSRSDYS-DIA-AELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAV 108 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC----EEEEEECccHH-HHH-HHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHH
Confidence 45799999999999999999999884 89999998643 222 23577 566777766 479999999999999999
Q ss_pred HHHhhh-cccccCCCcEEEEecC--CCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCc----eEEEEeC-----C
Q psy316 141 IQGLVN-DKVTLNSSRCIISMLV--GVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKG----ITGMCHD-----V 208 (341)
Q Consensus 141 l~~i~~-~~l~~~~~~iIVs~~a--gi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g----~~~l~~~-----~ 208 (341)
+.++ . +.+ +++++|+++++ +...+.+++.++ .+.+ +++.||+.+.+.+.+ ...+... +
T Consensus 109 l~~l-~~~~l--~~~~iviDv~SvK~~~~~~~~~~l~------~~~~-~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~ 178 (304)
T PLN02256 109 LRSL-PLQRL--KRSTLFVDVLSVKEFPKNLLLQVLP------EEFD-ILCTHPMFGPESGKGGWAGLPFVYDKVRIGDE 178 (304)
T ss_pred HHhh-hhhcc--CCCCEEEecCCchHHHHHHHHHhCC------CCCe-EEecCCCCCCCCCccccCCCeEEEecceecCC
Confidence 9887 4 456 78889999877 445677777776 4567 999999987765422 2222211 2
Q ss_pred CCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
..++ +..+.++++|+.+|..+ +++.+.||.++|.+++.|+.++. +|.. ...+ ...+...+|+...++
T Consensus 179 ~~~~--~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~---~L~~----~~~~---~~~~~~~gfrd~tri 246 (304)
T PLN02256 179 GERE--ARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGR---ILGK----MELE---STPINTKGYETLLRL 246 (304)
T ss_pred CCCH--HHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHH---HHHH----cCCc---ccccccccHHHHHHH
Confidence 2344 77889999999999865 56999999999999888875544 3332 2222 146777777877777
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS 334 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~ 334 (341)
..+ + -..+|..|.+...++.... +.|+.|.+ ..|+..+.
T Consensus 247 a~r----~---~~~~p~lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~ 287 (304)
T PLN02256 247 VEN----T---SSDSFDLYYGLFMYNPNAT-EELERLELAFDSVKKQLF 287 (304)
T ss_pred HHh----h---cCCCHHHHHHHHHHChHHH-HHHHHHHHHHHHHHHHHH
Confidence 642 0 1248999999999987766 88888877 34444443
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=162.20 Aligned_cols=232 Identities=16% Similarity=0.168 Sum_probs=169.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEc--CChhhhhhcCcCCCc--c-ccCh-HHHhhcCCEEEEeeChHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA--PSERFKLHWPEPMDF--A-LNDN-HRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~--r~~e~~~~l~~~~g~--~-~~s~-~e~~~~aDvIilaV~~~~ 136 (341)
+.++|+|+|+|.||.++++.|.++|+ .+.+++ ++.++.+...+ +|+ . ..+. .+.+..+|+||+|||...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~----~v~i~g~d~~~~~~~~a~~-lgv~d~~~~~~~~~~~~~aD~VivavPi~~ 76 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGL----VVRIIGRDRSAATLKAALE-LGVIDELTVAGLAEAAAEADLVIVAVPIEA 76 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCC----eEEEEeecCcHHHHHHHhh-cCcccccccchhhhhcccCCEEEEeccHHH
Confidence 56899999999999999999999995 555554 55444444333 565 2 2232 566778999999999999
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCCchh-----hhcCceEEEEeCC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPNTAM-----KYGKGITGMCHDV 208 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn~p~-----~v~~g~~~l~~~~ 208 (341)
+.++++++ .+.+ +++.+|+++ ++++. +.+++..+ ...+ ++..+|..-. .......++++.+
T Consensus 77 ~~~~l~~l-~~~l--~~g~iv~Dv-~S~K~~v~~a~~~~~~------~~~~-~vg~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 77 TEEVLKEL-APHL--KKGAIVTDV-GSVKSSVVEAMEKYLP------GDVR-FVGGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred HHHHHHHh-cccC--CCCCEEEec-ccccHHHHHHHHHhcc------CCCe-eEecCCCCCCcccccccCCCEEEEcCCC
Confidence 99999999 9888 889888876 44553 45555555 2225 6666664322 1123356777776
Q ss_pred CCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
..+. +..+.++++|+.+|..+ +++.+.||.+++...+.|++++. ++.....+.+.......++...+++...++
T Consensus 146 ~~~~--~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~---al~~~~~~~~~~~~~~~~~as~~frd~tRi 220 (279)
T COG0287 146 GTEK--EWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAAL---ALANALAKLETEELLVLKLASGGFRDITRI 220 (279)
T ss_pred CCCH--HHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHH---HHHHHHHhcCcchhHHHhccccchhhHHHH
Confidence 5555 78999999999999764 56999999999999988886665 555555565554455788999999988777
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
..+ +|..|.+...++.+...+.+..+.+
T Consensus 221 a~~-----------~P~m~~dI~~~N~~~~l~~i~~~~~ 248 (279)
T COG0287 221 ASS-----------DPEMYADIQLSNKEALLEAIERFAK 248 (279)
T ss_pred HcC-----------ChHHHHHHHHhCcHHHHHHHHHHHH
Confidence 644 8999999999998876666655544
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=159.32 Aligned_cols=230 Identities=17% Similarity=0.215 Sum_probs=154.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDS 139 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~ 139 (341)
+-.++|||||+|+||.+|+.+|+++|+ .|++|||+..+.+.+.+ .|. +..++.|++++||+||.+|| |.++++
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~----kVtV~dr~~~k~~~f~~-~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~ 107 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGY----KVTVYDRTKDKCKEFQE-AGARVANSPAEVAEDSDVVITMVPNPKDVKD 107 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCC----EEEEEeCcHHHHHHHHH-hchhhhCCHHHHHhhcCEEEEEcCChHhhHH
Confidence 356789999999999999999999995 99999999999999988 588 88999999999999999998 578899
Q ss_pred HHHHhhhcccc-cCCCcEE-EEecCCCCHHH---HHHhccccCCCCCCCCeEEEE--cCCchhhhcCce-EEEEeCCCCC
Q psy316 140 AIQGLVNDKVT-LNSSRCI-ISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRV--MPNTAMKYGKGI-TGMCHDVHLD 211 (341)
Q Consensus 140 vl~~i~~~~l~-~~~~~iI-Vs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~--mpn~p~~v~~g~-~~l~~~~~~~ 211 (341)
++..- ...+. .++++.. |++ +.++++. |++.... .+.+ .+.+ ..+.. ...+|. +++..++
T Consensus 108 v~~g~-~Gvl~g~~~g~~~~vDm-STidp~~s~ei~~~i~~-----~~~~-~vDAPVSGg~~-~A~~G~LtimagGd--- 175 (327)
T KOG0409|consen 108 VLLGK-SGVLSGIRPGKKATVDM-STIDPDTSLEIAKAISN-----KGGR-FVDAPVSGGVK-GAEEGTLTIMAGGD--- 175 (327)
T ss_pred HhcCC-CcceeeccCCCceEEec-cccCHHHHHHHHHHHHh-----CCCe-EEeccccCCch-hhhcCeEEEEecCc---
Confidence 88653 33231 0455554 654 5666543 4443331 2333 3332 11111 123454 4555543
Q ss_pred ccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
+ +.++++.++|+.+|+. +++++........|. ....+...+-+++|+ +.+.|++.....+++..+-.++..
T Consensus 176 e--~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~--nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~- 250 (327)
T KOG0409|consen 176 E--ALFEAASPVFKLMGKNVVFLGGVGNGQAAKLC--NNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSM- 250 (327)
T ss_pred H--HHHHHHHHHHHHhcceEEEecccCchHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHH-
Confidence 4 8899999999999975 456654433333332 223333444444443 569999999999999986555544
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHH
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL 324 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l 324 (341)
++. .-|.. .+....|++.+....++|
T Consensus 251 ~~~----------~~p~m-~k~dy~p~f~~~~m~KDL 276 (327)
T KOG0409|consen 251 FYN----------PVPGM-LKGDYNPGFALKLMVKDL 276 (327)
T ss_pred HhC----------cCchh-hcCCCCCcchHHHHHHHH
Confidence 333 12333 344577777777766666
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=162.19 Aligned_cols=228 Identities=16% Similarity=0.161 Sum_probs=150.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl~ 142 (341)
+||+|||+|+||.+|+++|.++|+ +|++|||++++.+.+.+ .|. ...++.++++++|+||+|||++ ++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~----~V~v~d~~~~~~~~~~~-~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~ 76 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH----QLQVFDVNPQAVDALVD-KGATPAASPAQAAAGAEFVITMLPNGDLVRSVLF 76 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-cCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHc
Confidence 489999999999999999999984 99999999999998877 477 6778888999999999999986 5888875
Q ss_pred H---hhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEE-cCCchhhhcCceE-EEEeCCCCCccHH
Q psy316 143 G---LVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGIT-GMCHDVHLDKESE 215 (341)
Q Consensus 143 ~---i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~-~l~~~~~~~~~~~ 215 (341)
. + .+.+ ++++++|+++++.+. ..+.+.+.. .+.. ++.+ +...+.....|.. +++.++ + +
T Consensus 77 ~~~~i-~~~l--~~g~lvid~sT~~p~~~~~l~~~l~~-----~g~~-~ldapV~g~~~~a~~g~l~~~~gg~---~--~ 142 (296)
T PRK15461 77 GENGV-CEGL--SRDALVIDMSTIHPLQTDKLIADMQA-----KGFS-MMDVPVGRTSDNAITGTLLLLAGGT---A--E 142 (296)
T ss_pred CcccH-hhcC--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCc-EEEccCCCCHHHHHhCcEEEEECCC---H--H
Confidence 3 4 4456 688899988555432 344444431 2333 3321 1122333334544 455543 4 8
Q ss_pred HHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy316 216 HLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVHKD 291 (341)
Q Consensus 216 ~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~ 291 (341)
.++.++++|+.+|.. +++++..-...+.++. +.+....+..+.|+ +.+.|++.+...+++..+..++..+...
T Consensus 143 ~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~--N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~- 219 (296)
T PRK15461 143 QVERATPILMAMGNELINAGGPGMGIRVKLIN--NYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTT- 219 (296)
T ss_pred HHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcc-
Confidence 899999999999975 4566543333344432 22333333344443 5699999999999998876666443322
Q ss_pred hhhccccCCCChHHHHHhcCCCchHHHHHHHHH
Q psy316 292 LLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL 324 (341)
Q Consensus 292 ~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l 324 (341)
.+..+.+.-.+|+.++....+.+
T Consensus 220 ----------~~~~~~~~~~~~~f~~~~~~KD~ 242 (296)
T PRK15461 220 ----------WPNKVLKGDLSPAFMIDLAHKDL 242 (296)
T ss_pred ----------ccchhccCCCCCCcchHHHHhhH
Confidence 23333444456665555555544
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-18 Score=160.25 Aligned_cols=196 Identities=14% Similarity=0.191 Sum_probs=136.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl~ 142 (341)
|||+|||+|+||.+|+++|+++|+ +|++|+|++. .+.+.+ .|. ...++.++++.+|+||+|||+. ++++++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~----~v~v~~~~~~-~~~~~~-~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~ 74 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH----QLHVTTIGPV-ADELLS-LGAVSVETARQVTEASDIIFIMVPDTPQVEEVLF 74 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC----eEEEEeCCHh-HHHHHH-cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHc
Confidence 479999999999999999999995 9999999874 566655 577 6778889999999999999964 7888874
Q ss_pred H---hhhcccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEEcC--CchhhhcCce-EEEEeCCCCCcc
Q psy316 143 G---LVNDKVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGI-TGMCHDVHLDKE 213 (341)
Q Consensus 143 ~---i~~~~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~-~~l~~~~~~~~~ 213 (341)
+ + .+.+ .++++||++ ++++++.. .+.+.. .+.. ++.. | ..+.....|. ++++.++ +
T Consensus 75 ~~~g~-~~~~--~~g~ivvd~-sT~~p~~~~~~~~~~~~-----~G~~-~vda-PVsGg~~~a~~g~l~~~~gG~---~- 139 (292)
T PRK15059 75 GENGC-TKAS--LKGKTIVDM-SSISPIETKRFARQVNE-----LGGD-YLDA-PVSGGEIGAREGTLSIMVGGD---E- 139 (292)
T ss_pred CCcch-hccC--CCCCEEEEC-CCCCHHHHHHHHHHHHH-----cCCC-EEEe-cCCCCHHHHhcCcEEEEEcCC---H-
Confidence 3 4 4445 678999987 55666533 343331 2344 4442 3 2233334554 4555553 4
Q ss_pred HHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
+.++.++++|+.+|.. +++++......+.+.. +.+++..+.++.|+ +.+.|++.++..+++..+...+
T Consensus 140 -~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~--N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s 211 (292)
T PRK15059 140 -AVFERVKPLFELLGKNITLVGGNGDGQTCKVAN--QIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASS 211 (292)
T ss_pred -HHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccC
Confidence 8899999999999975 5677765555555443 34444445555554 4689999999999887655444
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-18 Score=160.50 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=143.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc---CCEEEEeeChH-HHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE---AEYVFLAMKPQ-YLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~---aDvIilaV~~~-~v~~ 139 (341)
|||||||+|+||.+|+++|.++|+ +|++|||++++.+.+.+ .|. ...+++++++. +|+||+|+|++ ++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~----~v~v~dr~~~~~~~~~~-~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~ 75 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH----EVVGYDVNQEAVDVAGK-LGITARHSLEELVSKLEAPRTIWVMVPAGEVTES 75 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHH-CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHH
Confidence 489999999999999999999985 89999999999888876 577 67788888776 69999999986 8999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCCCccHHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~~~~~~~ 216 (341)
++.++ .+.+ +++++||++++..+. ..+.+.+.. .+.. ++.+ +...+.....|.+++..|+ + +.
T Consensus 76 v~~~i-~~~l--~~g~ivid~st~~~~~~~~~~~~~~~-----~g~~-~vdapV~G~~~~a~~g~~~~~gG~---~--~~ 141 (299)
T PRK12490 76 VIKDL-YPLL--SPGDIVVDGGNSRYKDDLRRAEELAE-----RGIH-YVDCGTSGGVWGLRNGYCLMVGGD---K--EI 141 (299)
T ss_pred HHHHH-hccC--CCCCEEEECCCCCchhHHHHHHHHHH-----cCCe-EEeCCCCCCHHHHhcCCeEEecCC---H--HH
Confidence 99988 8888 789999988554332 333344431 2333 3331 2233444445665666664 4 78
Q ss_pred HHHHHHHHHhcCC----eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcC--CCHHHHHHHHHH-HHHHH
Q psy316 217 LNMAIKIMEQGGI----VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQG--IPRDMALRIGAQ-LLKGS 284 (341)
Q Consensus 217 ~~~v~~ll~~lG~----~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~G--l~~~~a~~lv~~-~~~gs 284 (341)
++.++++|+.+|. .+++++..-.....+. .+.+++..+.++.|+ +.+.| ++.+++.+++.. +..++
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~--~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s 217 (299)
T PRK12490 142 YDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV--HNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRS 217 (299)
T ss_pred HHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHH
Confidence 9999999999995 4566654434444443 345566666667665 45788 999999999985 33443
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-17 Score=153.79 Aligned_cols=195 Identities=14% Similarity=0.110 Sum_probs=140.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc---CCEEEEeeChH-HHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE---AEYVFLAMKPQ-YLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~---aDvIilaV~~~-~v~~ 139 (341)
|||||||+|+||++|+++|+++|+ +|++|||++++.+.+.+ .|+ ...++.++++. +|+||+++|+. ++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~----~v~v~dr~~~~~~~~~~-~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~ 75 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH----EVVGYDRNPEAVEALAE-EGATGADSLEELVAKLPAPRVVWLMVPAGEITDA 75 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC----eEEEEECCHHHHHHHHH-CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHH
Confidence 589999999999999999999985 89999999999988876 587 67788888775 69999999986 8899
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHH--HHHHhccccCCCCCCCCeEEEEcC--CchhhhcCceEEEEeCCCCCccHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLE--TLKKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGITGMCHDVHLDKESE 215 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~--~l~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~~~l~~~~~~~~~~~ 215 (341)
++.++ .+.+ ++++++|+++++.+.. .+.+.+.. .+.. ++. .| ..+.....|.+++..|+ + +
T Consensus 76 v~~~l-~~~l--~~g~ivid~st~~~~~~~~~~~~~~~-----~g~~-~~d-apvsG~~~~a~~g~~~~~gG~---~--~ 140 (301)
T PRK09599 76 TIDEL-APLL--SPGDIVIDGGNSYYKDDIRRAELLAE-----KGIH-FVD-VGTSGGVWGLERGYCLMIGGD---K--E 140 (301)
T ss_pred HHHHH-HhhC--CCCCEEEeCCCCChhHHHHHHHHHHH-----cCCE-EEe-CCCCcCHHHHhcCCeEEecCC---H--H
Confidence 99888 8888 7889999886654422 23333331 2334 443 23 23333445666666654 4 8
Q ss_pred HHHHHHHHHHhcCC----e-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHH--cCCCHHHHHHHHHHHH
Q psy316 216 HLNMAIKIMEQGGI----V-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVK--QGIPRDMALRIGAQLL 281 (341)
Q Consensus 216 ~~~~v~~ll~~lG~----~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~--~Gl~~~~a~~lv~~~~ 281 (341)
.++.++++|+.+|. . +++++..-.....+ +.+++.+..+.++.|+ +.+ .|++.++..+++..+.
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl--~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~ 214 (301)
T PRK09599 141 AVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKM--VHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGS 214 (301)
T ss_pred HHHHHHHHHHHHcccccCCeEeECCCcHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCc
Confidence 89999999999997 4 56666433333333 2345555555566664 346 9999999999988653
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-17 Score=159.01 Aligned_cols=215 Identities=14% Similarity=0.144 Sum_probs=157.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
..++|+||| +|.||.++++.|.++|+ +|++|+|+.. .+..+++.+||+||+|||+....+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~----~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~~~ 159 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY----QVRILEQDDW-------------DRAEDILADAGMVIVSVPIHLTEEVI 159 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC----eEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHHHH
Confidence 457899998 99999999999999995 8999998631 14567788999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcCCchhhh--cCceEEEEeCCCCCccHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMPNTAMKY--GKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v--~~g~~~l~~~~~~~~~~~~ 216 (341)
.++ .+ + +++++|+++ ++++.. .+.+.++ .+ ++..+|...... -.+..++. .+..++ +.
T Consensus 160 ~~l-~~-l--~~~~iv~Dv-~SvK~~~~~~~~~~~~--------~~-fvg~HPm~G~~~~~~~~~~vv~-~~~~~~--~~ 222 (374)
T PRK11199 160 ARL-PP-L--PEDCILVDL-TSVKNAPLQAMLAAHS--------GP-VLGLHPMFGPDVGSLAKQVVVV-CDGRQP--EA 222 (374)
T ss_pred HHH-hC-C--CCCcEEEEC-CCccHHHHHHHHHhCC--------CC-EEeeCCCCCCCCcccCCCEEEE-cCCCCc--hH
Confidence 998 88 7 789898887 555543 3333333 25 777777533222 12222222 223344 67
Q ss_pred HHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhh
Q psy316 217 LNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKG----SGQLVHKD 291 (341)
Q Consensus 217 ~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~g----s~~l~~~~ 291 (341)
++.+.++++.+|..+ +++++.||..++++++.|++++. +++....+.|++.+...++...++.. +.+++.
T Consensus 223 ~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~---al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~-- 297 (374)
T PRK11199 223 YQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATF---AYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFA-- 297 (374)
T ss_pred HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHc--
Confidence 889999999999865 56999999999999888776654 33333344788877777777777776 555543
Q ss_pred hhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 292 LLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 292 ~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+|..|.+...++.... +.|+.|.+
T Consensus 298 ---------~~p~lw~dI~~~N~~~~-~~l~~~~~ 322 (374)
T PRK11199 298 ---------QDPQLYADIIMSSPENL-ALIKRYYQ 322 (374)
T ss_pred ---------CCHHHHHHHHHhChhHH-HHHHHHHH
Confidence 48999999999987766 77776665
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=150.46 Aligned_cols=149 Identities=21% Similarity=0.294 Sum_probs=109.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
++||||||+|+||+.|+++|+++|+ +|++|||++++.+++.++ |+ .+.++.|+++.+|+||+|||+ +++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~----~v~~~d~~~~~~~~~~~~-g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY----EVTVYDRSPEKAEALAEA-GAEVADSPAEAAEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT----EEEEEESSHHHHHHHHHT-TEEEESSHHHHHHHBSEEEE-SSSHHHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC----eEEeeccchhhhhhhHHh-hhhhhhhhhhHhhcccceEeecccchhhhhhh
Confidence 4799999999999999999999995 999999999999999884 78 888999999999999999996 7899999
Q ss_pred HH--hhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEEE-cCCchhhhcCce-EEEEeCCCCCccH
Q psy316 142 QG--LVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGI-TGMCHDVHLDKES 214 (341)
Q Consensus 142 ~~--i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~-~~l~~~~~~~~~~ 214 (341)
.+ + .+.+ +++++||++ +.++++. +.+.+.. .+.. ++.+ +...|....+|. +++..|+ +
T Consensus 76 ~~~~i-~~~l--~~g~iiid~-sT~~p~~~~~~~~~~~~-----~g~~-~vdapV~Gg~~~a~~g~l~~~~gG~---~-- 140 (163)
T PF03446_consen 76 FGENI-LAGL--RPGKIIIDM-STISPETSRELAERLAA-----KGVR-YVDAPVSGGPPGAEEGTLTIMVGGD---E-- 140 (163)
T ss_dssp HCTTH-GGGS---TTEEEEE--SS--HHHHHHHHHHHHH-----TTEE-EEEEEEESHHHHHHHTTEEEEEES----H--
T ss_pred hhhHH-hhcc--ccceEEEec-CCcchhhhhhhhhhhhh-----ccce-eeeeeeecccccccccceEEEccCC---H--
Confidence 88 8 7778 899999987 4556543 3344431 2333 3332 223344444554 6677765 3
Q ss_pred HHHHHHHHHHHhcCCeEE
Q psy316 215 EHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~~ 232 (341)
+.++.++++|+.+|..++
T Consensus 141 ~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 141 EAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp HHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHhCCce
Confidence 889999999999998654
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=166.01 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=139.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CCc----cccChHHHhhc---CCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MDF----ALNDNHRIIKE---AEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g~----~~~s~~e~~~~---aDvIilaV~~ 134 (341)
++|||||+|+||++|+++|+++|+ +|++|||++++.+.+.+. .|. .+.++.++++. +|+||+|||.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~----~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~ 82 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKA 82 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC----eEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCC
Confidence 479999999999999999999995 999999999998887652 132 45678888875 9999999985
Q ss_pred -HHHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCC
Q psy316 135 -QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHL 210 (341)
Q Consensus 135 -~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~ 210 (341)
.++++|+.++ .+.+ .++++||++.+.... ..+.+.+.. .+.. ++.+ +...+.....|.++++.|+
T Consensus 83 ~~aV~~Vi~gl-~~~l--~~G~iiID~sT~~~~~t~~~~~~l~~-----~Gi~-fldapVSGG~~gA~~G~~im~GG~-- 151 (493)
T PLN02350 83 GAPVDQTIKAL-SEYM--EPGDCIIDGGNEWYENTERRIKEAAE-----KGLL-YLGMGVSGGEEGARNGPSLMPGGS-- 151 (493)
T ss_pred cHHHHHHHHHH-Hhhc--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCe-EEeCCCcCCHHHhcCCCeEEecCC--
Confidence 6789999888 8888 899999998554322 233333331 2333 3322 1233334456666666664
Q ss_pred CccHHHHHHHHHHHHhcCC-------eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHH---HH-cCCCHHHHHHHHH
Q psy316 211 DKESEHLNMAIKIMEQGGI-------VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGA---VK-QGIPRDMALRIGA 278 (341)
Q Consensus 211 ~~~~~~~~~v~~ll~~lG~-------~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~---~~-~Gl~~~~a~~lv~ 278 (341)
+ +.++.++++|+.+|. +.++++..-...+.+.. +...+..++++.|+. .+ .|++.++..+++.
T Consensus 152 -~--~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~--N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~ 225 (493)
T PLN02350 152 -F--EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVH--NGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFA 225 (493)
T ss_pred -H--HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 4 889999999999983 45677655555555554 456666777777763 35 5999999888854
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=157.62 Aligned_cols=194 Identities=11% Similarity=0.102 Sum_probs=142.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CC--------------c-cccChHHHhhc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MD--------------F-ALNDNHRIIKE 124 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g--------------~-~~~s~~e~~~~ 124 (341)
.+||+|||+|+||.+|+..|.++|+ +|++|++++++++.+.+. .+ + .+.+..+++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL----QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG 79 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc
Confidence 3689999999999999999999984 899999999887765431 11 2 34566777899
Q ss_pred CCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceE
Q psy316 125 AEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGIT 202 (341)
Q Consensus 125 aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~ 202 (341)
||+||+|||++ ....++.++ .+.+ +++++|+|.++|++++.+++.++ ...+ ++++||+.|...+. ..
T Consensus 80 aDlVi~av~~~~~~~~~v~~~l-~~~~--~~~~ii~s~tsg~~~~~l~~~~~------~~~~-~ig~h~~~p~~~~~-l~ 148 (311)
T PRK06130 80 ADLVIEAVPEKLELKRDVFARL-DGLC--DPDTIFATNTSGLPITAIAQAVT------RPER-FVGTHFFTPADVIP-LV 148 (311)
T ss_pred CCEEEEeccCcHHHHHHHHHHH-HHhC--CCCcEEEECCCCCCHHHHHhhcC------Cccc-EEEEccCCCCccCc-eE
Confidence 99999999986 367788888 8777 67778889999999999988876 4567 99999999987766 44
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCeEE-cCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIVEI-IPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQL 280 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~-v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~ 280 (341)
.+++++..++ +.++.+.++|+.+|...+ +..+.-..+ .. ..+...+.|++.. +.+.|+++++..+++..+
T Consensus 149 ~i~~g~~t~~--~~~~~v~~l~~~~G~~~v~~~~d~~G~i---~n--r~~~~~~~Ea~~l-~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 149 EVVRGDKTSP--QTVATTMALLRSIGKRPVLVKKDIPGFI---AN--RIQHALAREAISL-LEKGVASAEDIDEVVKWS 219 (311)
T ss_pred EEeCCCCCCH--HHHHHHHHHHHHcCCEEEEEcCCCCCcH---HH--HHHHHHHHHHHHH-HHcCCCCHHHHHHHHHhc
Confidence 5567766667 899999999999998654 443311111 00 1122334444432 345678988887777543
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=167.81 Aligned_cols=197 Identities=12% Similarity=0.111 Sum_probs=145.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc------------------CCC-c-cccChHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE------------------PMD-F-ALNDNHRI 121 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~------------------~~g-~-~~~s~~e~ 121 (341)
.|.|||+|||+|+||.+||.+|+++|+ +|++||+++++++.+.+ ..| + .+.++.++
T Consensus 2 ~~i~kIavIG~G~MG~~iA~~la~~G~----~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea 77 (495)
T PRK07531 2 TMIMKAACIGGGVIGGGWAARFLLAGI----DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEA 77 (495)
T ss_pred CCcCEEEEECcCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHH
Confidence 356799999999999999999999995 99999999988765421 013 4 56677888
Q ss_pred hhcCCEEEEeeChHH-HH-HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMKPQY-LD-SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~~~~-v~-~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
+++||+||.|+|++. ++ .++.++ .+.+ +++.+|.|.++|++++.+.+.+. ...+ ++..+|+.|...+.
T Consensus 78 ~~~aD~Vieavpe~~~vk~~l~~~l-~~~~--~~~~iI~SsTsgi~~s~l~~~~~------~~~r-~~~~hP~nP~~~~~ 147 (495)
T PRK07531 78 VAGADWIQESVPERLDLKRRVLAEI-DAAA--RPDALIGSSTSGFLPSDLQEGMT------HPER-LFVAHPYNPVYLLP 147 (495)
T ss_pred hcCCCEEEEcCcCCHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------Ccce-EEEEecCCCcccCc
Confidence 999999999999763 44 466777 7777 77788889999999999988776 3567 89999998886654
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~ 279 (341)
.+.+++++..++ +.++.+.++|+.+|+..++-++.++.+.+-. ...+.+.|++.- +.+.|++.++..+++..
T Consensus 148 -Lvevv~g~~t~~--e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nr----l~~a~~~EA~~L-~~~g~~s~~~id~~~~~ 219 (495)
T PRK07531 148 -LVELVGGGKTSP--ETIRRAKEILREIGMKPVHIAKEIDAFVGDR----LLEALWREALWL-VKDGIATTEEIDDVIRY 219 (495)
T ss_pred -eEEEcCCCCCCH--HHHHHHHHHHHHcCCEEEeecCCCcchhHHH----HHHHHHHHHHHH-HHcCCCCHHHHHHHHhh
Confidence 446777777777 8999999999999997665333333333210 111223444432 34677888888888775
Q ss_pred H
Q psy316 280 L 280 (341)
Q Consensus 280 ~ 280 (341)
+
T Consensus 220 g 220 (495)
T PRK07531 220 S 220 (495)
T ss_pred c
Confidence 5
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-17 Score=152.63 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=138.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHh---hcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRII---KEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~---~~aDvIilaV~~~~v~~v 140 (341)
|||||||+|+||.+|+++|.++|+ +|.+|||++++.+.+.+ .+. ...++.++. ..+|+||+|||+..++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v 75 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH----DCVGYDHDQDAVKAMKE-DRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAV 75 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-cCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHH
Confidence 589999999999999999999984 99999999999998887 466 555665544 468999999999999999
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHHH--HHhccccCCCCCCCCeEEEEcC-CchhhhcCceEEEEeCCCCCccHHHH
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLETL--KKKLSVLVPNPNDAPTIIRVMP-NTAMKYGKGITGMCHDVHLDKESEHL 217 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~l--~~~l~~~~~~~~~~~~vvr~mp-n~p~~v~~g~~~l~~~~~~~~~~~~~ 217 (341)
++++ .+.+ +++++||++.++...... .+.+.. .+.+ ++.+.. ..+.....|.+++..|+ + +.+
T Consensus 76 ~~~l-~~~l--~~g~ivid~st~~~~~t~~~~~~~~~-----~g~~-~vda~vsGg~~~a~~G~~~~~gG~---~--~~~ 141 (298)
T TIGR00872 76 LEEL-APTL--EKGDIVIDGGNSYYKDSLRRYKLLKE-----KGIH-LLDCGTSGGVWGRERGYCFMIGGD---G--EAF 141 (298)
T ss_pred HHHH-HhhC--CCCCEEEECCCCCcccHHHHHHHHHh-----cCCe-EEecCCCCCHHHHhcCCeeeeCCC---H--HHH
Confidence 9999 8888 889999998776543332 223321 2334 444321 22333345666566654 4 889
Q ss_pred HHHHHHHHhcCC----eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHH---HHc--CCCHHHHHHHHHHHH
Q psy316 218 NMAIKIMEQGGI----VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGA---VKQ--GIPRDMALRIGAQLL 281 (341)
Q Consensus 218 ~~v~~ll~~lG~----~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~---~~~--Gl~~~~a~~lv~~~~ 281 (341)
+.++++|+.++. .+++++..-.....+.. +++.+..+.+++|+. .+. |++.++..+++..+.
T Consensus 142 ~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~--n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 142 ARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVH--NGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred HHHHHHHHHhcCcCCCEEEECCccHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence 999999999985 35666543334444332 455555566666642 344 579999888887654
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=151.31 Aligned_cols=200 Identities=15% Similarity=0.194 Sum_probs=134.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
|.|||+|||+|.||..+++.|.+.|+ +|++|+|++++.+.+.+ .|+ ...+..++++++|+||+|+|+ .+++.+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~----~v~~~d~~~~~~~~~~~-~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v 75 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGY----SLVVYDRNPEAVAEVIA-AGAETASTAKAVAEQCDVIITMLPNSPHVKEV 75 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHH
Confidence 56799999999999999999999984 89999999999888776 477 667888889999999999995 567777
Q ss_pred H---HHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEE--cCCchhhhcCceEEEEeCCCCCc
Q psy316 141 I---QGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRV--MPNTAMKYGKGITGMCHDVHLDK 212 (341)
Q Consensus 141 l---~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~--mpn~p~~v~~g~~~l~~~~~~~~ 212 (341)
+ .++ .+.+ +++++||++++ +++. .+.+.+.. .+.. ++.. +...+.......+++..++ +
T Consensus 76 ~~~~~~~-~~~~--~~g~iiid~st-~~~~~~~~l~~~~~~-----~g~~-~~d~pv~g~~~~a~~g~l~i~~gg~---~ 142 (296)
T PRK11559 76 ALGENGI-IEGA--KPGTVVIDMSS-IAPLASREIAAALKA-----KGIE-MLDAPVSGGEPKAIDGTLSVMVGGD---K 142 (296)
T ss_pred HcCcchH-hhcC--CCCcEEEECCC-CCHHHHHHHHHHHHH-----cCCc-EEEcCCCCCHHHHhhCcEEEEECCC---H
Confidence 6 346 6667 78899997754 4443 45555541 2233 3321 1112222222245555543 4
Q ss_pred cHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
+.++.++++|+.+|.. +++++..-...+.+.. +.+.+..+..+.|+ +.+.|++.++..+++..+..++
T Consensus 143 --~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~--n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s 214 (296)
T PRK11559 143 --AIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLAN--QVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGS 214 (296)
T ss_pred --HHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccC
Confidence 7889999999999975 4565433233333332 33333333333333 5689999999988887665544
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=150.15 Aligned_cols=198 Identities=15% Similarity=0.205 Sum_probs=137.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH--
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI-- 141 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl-- 141 (341)
||||||+|+||..|++.|.++|+ +|++|+|++++.+.+.+ .|. ...+..+++++||+||+|+|+ .+++.++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~ 75 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY----QLHVTTIGPEVADELLA-AGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFG 75 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-CCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcC
Confidence 59999999999999999999995 99999999999988877 477 667888899999999999996 4677776
Q ss_pred -HHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcCC--chhhhcCc-eEEEEeCCCCCccH
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMPN--TAMKYGKG-ITGMCHDVHLDKES 214 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mpn--~p~~v~~g-~~~l~~~~~~~~~~ 214 (341)
.++ .+.+ +++++||++++ +++. .+.+.+.. .+.. ++. .|- .+.....| ..++..++ +
T Consensus 76 ~~~~-~~~~--~~g~iivd~st-~~~~~~~~l~~~l~~-----~g~~-~~~-~pv~g~~~~a~~g~l~i~~gg~---~-- 139 (291)
T TIGR01505 76 ENGI-IEGA--KPGKTLVDMSS-ISPIESKRFAKAVKE-----KGID-YLD-APVSGGEIGAIEGTLSIMVGGD---Q-- 139 (291)
T ss_pred cchH-hhcC--CCCCEEEECCC-CCHHHHHHHHHHHHH-----cCCC-EEe-cCCCCCHHHHhcCCEEEEecCC---H--
Confidence 335 4556 78889997654 4443 45555542 2334 443 231 12222334 34455543 4
Q ss_pred HHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHH
Q psy316 215 EHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQ 286 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~ 286 (341)
+.++.++++|+.+|.. +++++..-...+.+.. +.+.+..++++.|+ +.+.|++.++..+++..+..++..
T Consensus 140 ~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~--n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~ 213 (291)
T TIGR01505 140 AVFDRVKPLFEALGKNIVLVGGNGDGQTCKVAN--QIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTV 213 (291)
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHH
Confidence 7889999999999975 4566543333344432 34555555555554 468999999999999877665443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-17 Score=151.79 Aligned_cols=194 Identities=18% Similarity=0.148 Sum_probs=138.9
Q ss_pred EEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH---HH
Q psy316 69 FIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI---QG 143 (341)
Q Consensus 69 iIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl---~~ 143 (341)
|||+|+||.+|+++|+++|+ +|++|||++++.+.+.+ .|+ ...++.++++++|+||+|||+ +++++++ .+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~----~V~v~dr~~~~~~~l~~-~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~ 75 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH----PVRVFDLFPDAVEEAVA-AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEG 75 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHH-cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcch
Confidence 69999999999999999995 99999999999998877 577 677888999999999999997 6788888 66
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHH---HhccccCCCCCCCCeEEEE-cCCchhhhcCce-EEEEeCCCCCccHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLK---KKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGI-TGMCHDVHLDKESEHLN 218 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~---~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~-~~l~~~~~~~~~~~~~~ 218 (341)
+ .+.+ .++++||+++ +++++..+ +.+.. .+.. ++.+ +...+.....|. ++++.++ + +.++
T Consensus 76 l-~~~~--~~g~~vid~s-t~~p~~~~~~~~~~~~-----~g~~-~vdaPv~Gg~~~a~~g~l~~~~gg~---~--~~~~ 140 (288)
T TIGR01692 76 I-LPKV--AKGSLLIDCS-TIDPDSARKLAELAAA-----HGAV-FMDAPVSGGVGGARAGTLTFMVGGV---A--EEFA 140 (288)
T ss_pred H-hhcC--CCCCEEEECC-CCCHHHHHHHHHHHHH-----cCCc-EEECCCCCCHHHHhhCcEEEEECCC---H--HHHH
Confidence 7 6677 7889999875 77765443 33331 2334 4432 112223334454 4455553 3 7889
Q ss_pred HHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHH
Q psy316 219 MAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGS 284 (341)
Q Consensus 219 ~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs 284 (341)
.++++|+.+|.. +++++......+.+.. +.+.+..+.++.|+ +.+.|++.+...+++..+...+
T Consensus 141 ~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s 208 (288)
T TIGR01692 141 AAEPVLGPMGRNIVHCGDHGAGQAAKICN--NMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRC 208 (288)
T ss_pred HHHHHHHHhcCCeEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccC
Confidence 999999999974 5677655555555544 33444444455554 5699999999999888665443
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=165.35 Aligned_cols=239 Identities=13% Similarity=0.112 Sum_probs=166.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh-cCCEEEEeeChHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK-EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~-~aDvIilaV~~~~v~~v 140 (341)
+.|||||||+|+||.+++++|.+.|+ +|++|+|+... +...+ +|+ ...+..+++. .+|+||+|||+..+.++
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~----~V~~~dr~~~~-~~a~~-~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v 441 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGH----TVLAYSRSDYS-DEAQK-LGVSYFSDADDLCEEHPEVILLCTSILSTEKV 441 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcC----EEEEEECChHH-HHHHH-cCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence 56899999999999999999999884 89999998653 33333 577 5667777765 59999999999999999
Q ss_pred HHHhhhc-ccccCCCcEEEEecCC--CCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc-Cce---E-----EEEeCC
Q psy316 141 IQGLVND-KVTLNSSRCIISMLVG--VDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG-KGI---T-----GMCHDV 208 (341)
Q Consensus 141 l~~i~~~-~l~~~~~~iIVs~~ag--i~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~-~g~---~-----~l~~~~ 208 (341)
+.++ .. .+ +++++|+++.++ ...+.+++.++ .+.+ +++.||+.....+ .|. . .++.++
T Consensus 442 i~~l-~~~~l--k~g~ivvDv~SvK~~~~~~~~~~l~------~~~~-~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~ 511 (667)
T PLN02712 442 LKSL-PFQRL--KRSTLFVDVLSVKEFPRNLFLQHLP------QDFD-ILCTHPMFGPESGKNGWNNLAFVFDKVRIGSD 511 (667)
T ss_pred HHHH-HHhcC--CCCcEEEECCCccHHHHHHHHHhcc------CCCc-eEeeCCCCCccccccchhhhhhhccCcEeCCC
Confidence 9988 65 56 788999998665 34566777776 4567 8999998776654 231 1 111222
Q ss_pred CCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
.... +..+.+.++|+.+|..+ +++.+.||..+|.+.+.|+.++ ....+.|++. ..+...++.....+
T Consensus 512 ~~~~--~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHlla-------~~L~~~~~~~---~~~~~~gfr~l~~L 579 (667)
T PLN02712 512 DRRV--SRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTMG-------RLLEKLGLES---TPINTKGYETLLNL 579 (667)
T ss_pred cchH--HHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHH-------HHHHHCCCcc---cccccHHHHHHHHH
Confidence 2122 45566779999999865 5688999999998887776444 2234556541 33444455555544
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHHHHH
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFSSAA 337 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~~a~ 337 (341)
+.+- ...+|..|.+....+... .+.|+.|++ ..++..+.+=+
T Consensus 580 i~Ri-------a~~~p~l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~~~~ 623 (667)
T PLN02712 580 VENT-------AGDSFDLYYGLFMYNVNA-MEQLERLDLAFESLKKQLFGRL 623 (667)
T ss_pred HHhh-------cCCCHHHHHHHHHHChHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4331 235899999999888766 677777776 34555544433
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-18 Score=133.27 Aligned_cols=93 Identities=32% Similarity=0.502 Sum_probs=80.3
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhcCcCCCc-ccc-ChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHWPEPMDF-ALN-DNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l~~~~g~-~~~-s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
||||||+|+||++|+++|+++|. ++++|+++ +|++++++++++++++ ... ++.++++++|+||+||||+++.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~-~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI-KPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS--GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence 79999999999999999999996 67899955 9999999999887887 444 88999999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCC
Q psy316 143 GLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ag 163 (341)
++ ... .++++|||+++|
T Consensus 80 ~i-~~~---~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI-PHL---LKGKLVISIAAG 96 (96)
T ss_dssp HH-HHH---HTTSEEEEESTT
T ss_pred HH-hhc---cCCCEEEEeCCC
Confidence 98 554 489999999886
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=149.18 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=136.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------------Cc-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------------DF-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------------g~-~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|+||++++..|.++|+ +|++|+|++++.+.++++. ++ ...+..+.+.++|+||+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 77 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH----DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILV 77 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEE
Confidence 689999999999999999999984 8999999998887766531 34 45567778889999999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH-------HHHHhccccCCCCCCCCeEEEEcCCchhhhcCce--
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE-------TLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI-- 201 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~-------~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~-- 201 (341)
|||++++++++.++ .+.+ .++++||++.+|++.+ .+++.++. .... .+...|+.+...+.|.
T Consensus 78 ~v~~~~~~~v~~~l-~~~~--~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~-----~~~~-~~~~~P~~~~~~~~g~~~ 148 (325)
T PRK00094 78 AVPSQALREVLKQL-KPLL--PPDAPIVWATKGIEPGTGKLLSEVLEEELPD-----LAPI-AVLSGPSFAKEVARGLPT 148 (325)
T ss_pred eCCHHHHHHHHHHH-Hhhc--CCCCEEEEEeecccCCCCCcHHHHHHHHcCC-----CCce-EEEECccHHHHHHcCCCc
Confidence 99999999999999 8888 7889999999888853 33444441 0123 5567788776655442
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchh---------HHHHHhc-------chHHHHHHHHHHHHHH---
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMN---------SFGAIAG-------SGCAYLFLVMDAMADG--- 262 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d---------~~~al~g-------~gpa~~~~~~eal~ea--- 262 (341)
..+..+ .+. +..+.+.++|+..|..+++.++... .+....| ..+.....+..++.|.
T Consensus 149 ~~~~~~--~~~--~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 149 AVVIAS--TDE--ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred EEEEEe--CCH--HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 222222 234 7889999999999976655433211 1100011 1122334445555554
Q ss_pred HHHcCCCHHHHHHHH
Q psy316 263 AVKQGIPRDMALRIG 277 (341)
Q Consensus 263 ~~~~Gl~~~~a~~lv 277 (341)
+.+.|++++++.++.
T Consensus 225 a~~~G~d~~~~~~~~ 239 (325)
T PRK00094 225 GVALGANPETFLGLA 239 (325)
T ss_pred HHHhCCChhhhhccc
Confidence 468999999887653
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-15 Score=152.79 Aligned_cols=194 Identities=14% Similarity=0.140 Sum_probs=139.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CC--c-cccChHHHhh---cCCEEEEeeCh-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MD--F-ALNDNHRIIK---EAEYVFLAMKP- 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g--~-~~~s~~e~~~---~aDvIilaV~~- 134 (341)
.+|||||+|+||++||++|+++|+ +|++|||++++.+.+.+. .| + .+.+++++++ ++|+||++|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~ 77 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF----KISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAG 77 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCCh
Confidence 479999999999999999999995 999999999998877642 14 3 5678888876 58999999865
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHH--HhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCCC
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLK--KKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHLD 211 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~--~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~~ 211 (341)
+.++++++++ .+.+ .++++||++.++...++.+ +.+.. .+.. ++.+ +...+.....|.++++.|+
T Consensus 78 ~~v~~vi~~l-~~~L--~~g~iIID~gn~~~~dt~~r~~~l~~-----~Gi~-fldapVSGG~~gA~~G~~lm~GG~--- 145 (470)
T PTZ00142 78 EAVDETIDNL-LPLL--EKGDIIIDGGNEWYLNTERRIKRCEE-----KGIL-YLGMGVSGGEEGARYGPSLMPGGN--- 145 (470)
T ss_pred HHHHHHHHHH-HhhC--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCe-EEcCCCCCCHHHHhcCCEEEEeCC---
Confidence 6899999999 9999 8999999997776544332 22221 2333 3321 1123333345666667664
Q ss_pred ccHHHHHHHHHHHHhcCCe-------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HH-HcCCCHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIV-------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AV-KQGIPRDMALRIGA 278 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~-------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~-~~Gl~~~~a~~lv~ 278 (341)
+ +.++.++++|+.++.. .++++..-..+..+.. +...+..++++.|+ +. +.|++.++..+++.
T Consensus 146 ~--~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvh--N~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 146 K--EAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVH--NGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred H--HHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 4 8899999999999854 4667655555555554 34555666666665 23 58999999888874
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=173.68 Aligned_cols=227 Identities=15% Similarity=0.132 Sum_probs=157.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..||||||+|+||..|+++|+++|+ +|++|||++++.+.+.+ .|. .+.++.+++++||+||+|+|+ .++++|+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~----~v~v~dr~~~~~~~l~~-~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGF----KVQAFEISTPLMEKFCE-LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHH
Confidence 4689999999999999999999995 99999999999999987 588 788999999999999999985 6788887
Q ss_pred ---HHhhhcccccCCCcEEEEecCCCCHHHHHH---hccccCCCCCC--CCeEEEE-cCCchhhhcCc-eEEEEeCCCCC
Q psy316 142 ---QGLVNDKVTLNSSRCIISMLVGVDLETLKK---KLSVLVPNPND--APTIIRV-MPNTAMKYGKG-ITGMCHDVHLD 211 (341)
Q Consensus 142 ---~~i~~~~l~~~~~~iIVs~~agi~~~~l~~---~l~~~~~~~~~--~~~vvr~-mpn~p~~v~~g-~~~l~~~~~~~ 211 (341)
.++ .+.+ ++++++|.+ +.++++..++ .+.. .+ .. ++.+ +...+.....| .++++.|+
T Consensus 79 ~g~~g~-~~~l--~~g~iivd~-STi~p~~~~~la~~l~~-----~g~~~~-~lDaPVsGg~~~A~~G~L~imvGG~--- 145 (1378)
T PLN02858 79 FGDEGA-AKGL--QKGAVILIR-STILPLQLQKLEKKLTE-----RKEQIF-LVDAYVSKGMSDLLNGKLMIIASGR--- 145 (1378)
T ss_pred hchhhH-HhcC--CCcCEEEEC-CCCCHHHHHHHHHHHHh-----cCCceE-EEEccCcCCHHHHhcCCeEEEEcCC---
Confidence 345 5566 788999987 5566654433 3331 22 23 3321 12333334455 45566664
Q ss_pred ccHHHHHHHHHHHHhcCCeE-Ec-CCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIVE-II-PESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQ 286 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~~-~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~ 286 (341)
+ +.++.++++|+.+|..+ ++ ++..-...+.+.. +.+++..+.++.|+ +.+.|++++..++++..+..++..
T Consensus 146 ~--~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~n--N~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~ 221 (1378)
T PLN02858 146 S--DAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVN--ELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWI 221 (1378)
T ss_pred H--HHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHH
Confidence 3 78999999999999865 34 6544344444432 33444445555554 579999999999999988665543
Q ss_pred HHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHH
Q psy316 287 LVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL 324 (341)
Q Consensus 287 l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l 324 (341)
+.. ....+.+.-.+|+++...+.+.|
T Consensus 222 -~~~-----------~~~~~~~~d~~~~F~l~l~~KDl 247 (1378)
T PLN02858 222 -FKN-----------HVPLLLKDDYIEGRFLNVLVQNL 247 (1378)
T ss_pred -HHh-----------hhhHhhcCCCCCCchhHHHHHHH
Confidence 322 12344445567766666666555
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=151.62 Aligned_cols=201 Identities=16% Similarity=0.185 Sum_probs=141.7
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhcCCCCCCeEEEEcCChh-----hhhhcCcCCCc-cccCh
Q psy316 65 TKVGFIGAGNM--------------------AQAVATSLIRTGLCIPAQIIASAPSER-----FKLHWPEPMDF-ALNDN 118 (341)
Q Consensus 65 ~kIgiIG~G~m--------------------G~aia~~L~~~G~~~~~~V~v~~r~~e-----~~~~l~~~~g~-~~~s~ 118 (341)
|||.|.|+||- |.+||.+|.++|+ +|++|+|+++ +.+.+.+ .|+ .+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~----~V~v~Dr~~~~l~~~~~~~l~~-~Gi~~asd~ 75 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH----DVVLAEPNRSILSEELWKKVED-AGVKVVSDD 75 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC----eEEEEECCHHHhhHHHHHHHHH-CCCEEeCCH
Confidence 57888888873 7889999999994 9999999987 3444544 577 67788
Q ss_pred HHHhhcCCEEEEeeChHH-HHHHHHHhhhcccccCCCcEEEEecCCCCHH----HHHHhccccCCCCCCCCeEEEEcCCc
Q psy316 119 HRIIKEAEYVFLAMKPQY-LDSAIQGLVNDKVTLNSSRCIISMLVGVDLE----TLKKKLSVLVPNPNDAPTIIRVMPNT 193 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~~~-v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~----~l~~~l~~~~~~~~~~~~vvr~mpn~ 193 (341)
.++++++|+||+|+|+.. +++++.++ .+.+ .++++||+++++ +.. .+++.++ ...+ .+++++++
T Consensus 76 ~eaa~~ADvVIlaVP~~~~v~~Vl~~L-~~~L--~~g~IVId~ST~-~~~~~s~~l~~~l~------~~~~-~~gi~~~~ 144 (342)
T PRK12557 76 AEAAKHGEIHILFTPFGKKTVEIAKNI-LPHL--PENAVICNTCTV-SPVVLYYSLEGELR------TKRK-DVGISSMH 144 (342)
T ss_pred HHHHhCCCEEEEECCCcHHHHHHHHHH-HhhC--CCCCEEEEecCC-CHHHHHHHHHHHhc------cccc-ccCeeecC
Confidence 888999999999999877 89999999 8888 788899987654 443 3445554 1223 34555554
Q ss_pred hhhh----cCceEEEEeCC-----CCCccHHHHHHHHHHHHhcCCeE-EcCCCchhH-------HHHHhcchHHHHHHHH
Q psy316 194 AMKY----GKGITGMCHDV-----HLDKESEHLNMAIKIMEQGGIVE-IIPESMMNS-------FGAIAGSGCAYLFLVM 256 (341)
Q Consensus 194 p~~v----~~g~~~l~~~~-----~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~-------~~al~g~gpa~~~~~~ 256 (341)
|..+ ..+.++++.+. ..++ ++++.++++|+.+|..+ ++++...+. +++++.+++++.+.+.
T Consensus 145 p~~v~Gae~g~l~Vm~gg~t~~~~~~~~--e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~ 222 (342)
T PRK12557 145 PAAVPGTPQHGHYVIAGKTTNGTELATE--EQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVG 222 (342)
T ss_pred CccccccccchheEEeCCCcccccCCCH--HHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433 33455554331 1245 78999999999999854 456543333 5555555555555443
Q ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHh
Q psy316 257 DAMADGAVKQG-IPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 257 eal~ea~~~~G-l~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.+.| .+++.+.+++.+++.|+++|+++
T Consensus 223 -------~~~~~~p~~~~~~~~~~~~~~~a~l~~~ 250 (342)
T PRK12557 223 -------TKIIKAPKEMIEKQILMTLQTMASLVET 250 (342)
T ss_pred -------HHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 45777899999999999999976
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-17 Score=146.21 Aligned_cols=148 Identities=17% Similarity=0.208 Sum_probs=117.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------CCc----cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------MDF----ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~g~----~~~s~~e~~~~aDvIilaV 132 (341)
|||+||| +|+||+++++.|.++| ++|++++|++++++.+.++ .|+ ...+..+.+.++|+||+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G----~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG----NKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC----CEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence 5899997 8999999999999998 4999999999887765432 122 2246677889999999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-----------------HHHHHhccccCCCCCCCCeEEEEcCCchh
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-----------------ETLKKKLSVLVPNPNDAPTIIRVMPNTAM 195 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-----------------~~l~~~l~~~~~~~~~~~~vvr~mpn~p~ 195 (341)
|++.+.++++++ .+.+ . +++|||+++|++. +.++++++ ...+ |+++|||++.
T Consensus 77 p~~~~~~~l~~l-~~~l--~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p------~~~~-VVka~~~~~a 145 (219)
T TIGR01915 77 PWDHVLKTLESL-RDEL--S-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLP------ETSR-VVAAFHNLSA 145 (219)
T ss_pred CHHHHHHHHHHH-HHhc--c-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCC------CCCe-EeeccccCCH
Confidence 999999999998 8777 4 5899999999986 55777777 3478 9999999887
Q ss_pred hhcCc------eEEEEeCCCCCccHHHHHHHHHHHHhc-CCeE
Q psy316 196 KYGKG------ITGMCHDVHLDKESEHLNMAIKIMEQG-GIVE 231 (341)
Q Consensus 196 ~v~~g------~~~l~~~~~~~~~~~~~~~v~~ll~~l-G~~~ 231 (341)
....+ ...+++++. + +..+.|..|.+.+ |...
T Consensus 146 ~~~~~~~~~~~~~~~v~Gdd--~--~ak~~v~~L~~~~~G~~~ 184 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGDD--E--EAKEVVAELAGRIDGLRA 184 (219)
T ss_pred HHhcCCCCCCCCCEEEECCC--H--HHHHHHHHHHHhcCCCCc
Confidence 65432 334555542 4 6788999999999 8753
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=158.09 Aligned_cols=235 Identities=15% Similarity=0.170 Sum_probs=157.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHh-hcCCEEEEeeChHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRII-KEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~-~~aDvIilaV~~~~v~~v 140 (341)
-++||+|||+|+||.+++++|.+.|+ +|++|+|+... +... ++|+ ...++.+++ .++|+||+|||++.+.++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~dr~~~~-~~A~-~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~v 124 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGH----TVLAHSRSDHS-LAAR-SLGVSFFLDPHDLCERHPDVILLCTSIISTENV 124 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEEeCCHHH-HHHH-HcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHH
Confidence 35689999999999999999999984 89999998544 3333 3677 666777755 569999999999999999
Q ss_pred HHHhhh-cccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCCchhhhc----CceEEEEe----CC
Q psy316 141 IQGLVN-DKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG----KGITGMCH----DV 208 (341)
Q Consensus 141 l~~i~~-~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~----~g~~~l~~----~~ 208 (341)
+.++ . +.+ +++++|+++. +++. +.+++.++ .+.. ++..||..-.+.. .+...++. ++
T Consensus 125 l~~l-~~~~l--~~g~iVvDv~-SvK~~~~~~l~~~l~------~~~~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~ 193 (667)
T PLN02712 125 LKSL-PLQRL--KRNTLFVDVL-SVKEFAKNLLLDYLP------EDFD-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGN 193 (667)
T ss_pred HHhh-hhhcC--CCCeEEEECC-CCcHHHHHHHHHhcC------CCCe-EEeeCCcCCCccccchhccCcEEEeeccCCC
Confidence 9988 6 567 7888999884 4553 34556666 4567 8899886433211 12222222 11
Q ss_pred C-CCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy316 209 H-LDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQ 286 (341)
Q Consensus 209 ~-~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~ 286 (341)
. ... +..+.++++|+.+|..+ +++.+.||.+.|.+.+.|++++..+..+... ...+.... ++...... .+
T Consensus 194 ~~~~~--~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~~--~~~~~~~~-~~~~l~l~---~R 265 (667)
T PLN02712 194 EELRV--SRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKLE--STPINTKG-YESLLDLV---EN 265 (667)
T ss_pred ccccH--HHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCcc-HHHHHHHH---HH
Confidence 1 111 34667789999999865 5699999999999999998776654322210 00111000 11221121 34
Q ss_pred HHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH
Q psy316 287 LVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS 334 (341)
Q Consensus 287 l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~ 334 (341)
++. .+|+.|.+....+. ...+.|+.|++ ..++..+.
T Consensus 266 ia~-----------~~p~L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 266 TCG-----------DSFDLYYGLFMYNK-NSLEMLERLDLAFEALRKQLF 303 (667)
T ss_pred Hhc-----------CCHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 442 48999999999987 77778888877 34444443
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-16 Score=147.24 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=134.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------C------c-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------D------F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g------~-~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|+||++|+..|.++|+ +|++|+|++++.+.+.+.. | + .+.++.++++++|+||+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~----~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~ 80 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV----PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVV 80 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence 589999999999999999999994 9999999988877665421 2 3 45577788899999999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCce---E
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI---T 202 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~---~ 202 (341)
|||+++++++++.+ +++.++|++++|+. ...+.+.++... .... .+...|+.+..++.|. +
T Consensus 81 ~v~~~~~~~v~~~l-------~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~---~~~~-~~~~gP~~a~~~~~~~~~~~ 149 (328)
T PRK14618 81 AVPSKALRETLAGL-------PRALGYVSCAKGLAPDGGRLSELARVLEFLT---QARV-AVLSGPNHAEEIARFLPAAT 149 (328)
T ss_pred ECchHHHHHHHHhc-------CcCCEEEEEeeccccCCCccchHHHHHHHhc---CCCe-EEEECccHHHHHHcCCCeEE
Confidence 99999988888666 46678999999876 445555554100 1222 5677899888876653 2
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchhHH--------HHH-hcch-------HHHHHHHHHHHHHH---H
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF--------GAI-AGSG-------CAYLFLVMDAMADG---A 263 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d~~--------~al-~g~g-------pa~~~~~~eal~ea---~ 263 (341)
.+..+ ++ +..+.++++|+..|..++++++..... .++ .|.+ +...+.+..++.|+ +
T Consensus 150 ~~~~~---~~--~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la 224 (328)
T PRK14618 150 VVASP---EP--GLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFG 224 (328)
T ss_pred EEEeC---CH--HHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 33333 34 788999999999998877654422211 111 1111 12333444455554 4
Q ss_pred HHcCCCHHHHHHHHH
Q psy316 264 VKQGIPRDMALRIGA 278 (341)
Q Consensus 264 ~~~Gl~~~~a~~lv~ 278 (341)
.+.|++++++.++..
T Consensus 225 ~~~G~~~~~~~~~~~ 239 (328)
T PRK14618 225 VALGAEEATFYGLSG 239 (328)
T ss_pred HHhCCCccchhcCcc
Confidence 689999999888754
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=147.54 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=122.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-----------cCcCC------------Cc-cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-----------WPEPM------------DF-ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-----------l~~~~------------g~-~~~s~~e 120 (341)
+||+|||+|.||.+|+..|+++|+ +|+++|++++++++ +.+.. ++ .+++. +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~----~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~-~ 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY----DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDL-D 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-H
Confidence 479999999999999999999984 99999999988742 22211 12 23444 4
Q ss_pred HhhcCCEEEEeeChHHH--HHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 121 IIKEAEYVFLAMKPQYL--DSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~v--~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
.+++||+||+|+|++.. .+++.++ .+++ +++++|+|.++|++++.+++.++ ...+ ++++||+.|+.+.
T Consensus 79 ~~~~aDlVi~av~e~~~~k~~~~~~l-~~~~--~~~~il~s~ts~~~~~~la~~~~------~~~r-~ig~h~~~P~~~~ 148 (282)
T PRK05808 79 DLKDADLVIEAATENMDLKKKIFAQL-DEIA--KPEAILATNTSSLSITELAAATK------RPDK-VIGMHFFNPVPVM 148 (282)
T ss_pred HhccCCeeeecccccHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHHhhC------CCcc-eEEeeccCCcccC
Confidence 57899999999986433 5888898 8888 88999999999999999999887 4568 9999999999988
Q ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 199 KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 199 ~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
.++. ++.++..++ +..+.+.++|+.+|+...
T Consensus 149 ~~ve-v~~g~~t~~--e~~~~~~~l~~~lGk~pv 179 (282)
T PRK05808 149 KLVE-IIRGLATSD--ATHEAVEALAKKIGKTPV 179 (282)
T ss_pred ccEE-EeCCCCCCH--HHHHHHHHHHHHcCCeeE
Confidence 8876 677777777 999999999999998653
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=169.18 Aligned_cols=230 Identities=14% Similarity=0.154 Sum_probs=153.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~v 140 (341)
+.++|||||+|+||.+|+++|+++|+ +|++|||++++.+.+.+ .|. ...++.+++++||+||+||| |+++++|
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~----~V~v~dr~~~~~~~l~~-~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~V 397 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF----SVCGYDVYKPTLVRFEN-AGGLAGNSPAEVAKDVDVLVIMVANEVQAENV 397 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeecCCHHHHHhcCCEEEEecCChHHHHHH
Confidence 45789999999999999999999995 99999999999988877 476 67788999999999999999 7889999
Q ss_pred HH---HhhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEEE-cCCchhhhcCc-eEEEEeCCCCCc
Q psy316 141 IQ---GLVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKG-ITGMCHDVHLDK 212 (341)
Q Consensus 141 l~---~i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g-~~~l~~~~~~~~ 212 (341)
+. ++ .+.+ ++++++|.+ ++++++. +.+.+.. .+.+.. ++.+ +...|.....| .++++.|+ +
T Consensus 398 l~g~~g~-~~~l--~~g~ivVd~-STvsP~~~~~la~~l~~---~g~g~~-~lDAPVsGg~~~A~~G~L~imvgG~---~ 466 (1378)
T PLN02858 398 LFGDLGA-VSAL--PAGASIVLS-STVSPGFVIQLERRLEN---EGRDIK-LVDAPVSGGVKRAAMGTLTIMASGT---D 466 (1378)
T ss_pred HhchhhH-HhcC--CCCCEEEEC-CCCCHHHHHHHHHHHHh---hCCCcE-EEEccCCCChhhhhcCCceEEEECC---H
Confidence 83 35 4556 788999987 4555544 3333331 001223 3321 12334444455 46666664 4
Q ss_pred cHHHHHHHHHHHHhcCCeE-Ec-CCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIVE-II-PESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~~-~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
+.++.++++|+.+|..+ ++ ++..-...+.+.. +.+.+..+.++.|+ +.+.|++.+..++++..+...+. +
T Consensus 467 --~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~n--N~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~-~ 541 (1378)
T PLN02858 467 --EALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVN--QLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSW-M 541 (1378)
T ss_pred --HHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCh-h
Confidence 78999999999999865 43 4333334444432 33344444455554 46899999999999988765543 3
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHH
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL 324 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l 324 (341)
+.. .-| .+.+.-++|+.+.....+.|
T Consensus 542 ~~~----------~~~-~~l~~d~~~~f~l~l~~KDl 567 (1378)
T PLN02858 542 FEN----------RVP-HMLDNDYTPYSALDIFVKDL 567 (1378)
T ss_pred hhh----------ccc-hhhcCCCCCCchhHHHHHHH
Confidence 332 123 33344456665555555444
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-15 Score=149.35 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=137.8
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----Cc-cccChHHHh---hcCCEEEEeeCh-HH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----DF-ALNDNHRII---KEAEYVFLAMKP-QY 136 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g~-~~~s~~e~~---~~aDvIilaV~~-~~ 136 (341)
+|||||+|+||.+|+++|+++|+ +|++|||++++.+.+.++. ++ ...++.+++ .++|+||+|||+ ..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~----~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF----TVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC----eEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 48999999999999999999995 9999999999999887642 24 456677766 368999999998 78
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHH--HhccccCCCCCCCCeEEEEc-CCchhhhcCceEEEEeCCCCCcc
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLK--KKLSVLVPNPNDAPTIIRVM-PNTAMKYGKGITGMCHDVHLDKE 213 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~--~~l~~~~~~~~~~~~vvr~m-pn~p~~v~~g~~~l~~~~~~~~~ 213 (341)
+++++.++ .+++ .++++||++.++...+..+ +.+.. .+.. ++.+. ...+.....|.+++..|+ +
T Consensus 77 v~~Vi~~l-~~~L--~~g~iIID~gns~~~~t~~~~~~l~~-----~gi~-fvdapVsGG~~gA~~G~~im~GG~---~- 143 (467)
T TIGR00873 77 VDAVINQL-LPLL--EKGDIIIDGGNSHYPDTERRYKELKA-----KGIL-FVGSGVSGGEEGARKGPSIMPGGS---A- 143 (467)
T ss_pred HHHHHHHH-HhhC--CCCCEEEECCCcCHHHHHHHHHHHHh-----cCCE-EEcCCCCCCHHHHhcCCcCCCCCC---H-
Confidence 99999999 8988 8999999987655443322 22221 2333 33321 122333345666665554 4
Q ss_pred HHHHHHHHHHHHhcCCe-------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHH----HHcCCCHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV-------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGA----VKQGIPRDMALRIGA 278 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~-------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~----~~~Gl~~~~a~~lv~ 278 (341)
+.++.++++|+.++.. .++++..-..+..+.. +...+..++++.|+. .+.|++.++..+++.
T Consensus 144 -~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvh--N~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 144 -EAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVH--NGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred -HHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8899999999999864 4667655555555554 345566666777753 259999999888883
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=145.72 Aligned_cols=219 Identities=11% Similarity=0.105 Sum_probs=149.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
++||+|||+ |.||+++++.|.+.. .++|+.+||+.+ ...++.+.+.+||+||+|||+..+.++++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~---~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~~~l~ 69 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM---QLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRHTAALIE 69 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC---CCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHHHHHH
Confidence 578999999 999999999998751 358999998511 12356778899999999999999999999
Q ss_pred Hhhhcc---cccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh---cCce-EEEEeCCCCCccHH
Q psy316 143 GLVNDK---VTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY---GKGI-TGMCHDVHLDKESE 215 (341)
Q Consensus 143 ~i~~~~---l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v---~~g~-~~l~~~~~~~~~~~ 215 (341)
++ .++ + +++++|.++ ++++..-++..++ ...+ ++..+|..-.+. -+|. .++++.. .. +
T Consensus 70 ~l-~~~~~~l--~~~~iVtDV-gSvK~~i~~~~~~------~~~~-fVG~HPMaG~E~s~lf~g~~~iltp~~--~~--~ 134 (370)
T PRK08818 70 EY-VALAGGR--AAGQLWLDV-TSIKQAPVAAMLA------SQAE-VVGLHPMTAPPKSPTLKGRVMVVCEAR--LQ--H 134 (370)
T ss_pred HH-hhhhcCC--CCCeEEEEC-CCCcHHHHHHHHh------cCCC-EEeeCCCCCCCCCcccCCCeEEEeCCC--ch--h
Confidence 98 765 6 677776665 6677665555555 3346 778777543221 1343 4455542 23 5
Q ss_pred HHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCH-H--HHHHHHHHHHH-HH---HHH
Q psy316 216 HLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPR-D--MALRIGAQLLK-GS---GQL 287 (341)
Q Consensus 216 ~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~-~--~a~~lv~~~~~-gs---~~l 287 (341)
..+.++++++.+|..+ +++.+.||.++|...+.|++.+..+..+.. ...... + ....+...+|+ .. .++
T Consensus 135 ~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~---~~~~~~~~~~~~~~f~~~gFr~d~t~iTRI 211 (370)
T PRK08818 135 WSPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLR---DYAPLLGELRALMPYRSASFELDTAVIARI 211 (370)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhhhhhccccchhhHHHhhhcchh
Confidence 5778999999999865 569999999999998777766665444432 111110 1 11134444444 22 233
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
. ..+|..|.+...++. ...+.|+.|.+
T Consensus 212 A-----------ss~P~mW~dI~~~N~-~i~~~l~~~~~ 238 (370)
T PRK08818 212 L-----------SLNPSIYEDIQFGNP-YVGEMLDRLLA 238 (370)
T ss_pred h-----------cCCHHHHHHHHHhCH-HHHHHHHHHHH
Confidence 3 358999999999998 77777777765
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=141.37 Aligned_cols=218 Identities=12% Similarity=0.146 Sum_probs=152.3
Q ss_pred HHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcE
Q psy316 79 VATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRC 156 (341)
Q Consensus 79 ia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~i 156 (341)
||+.|.++|. ..+|+.+|++++.++...+ .|+ ...+..+.+.++|+||+|||+..+.++++++ .+++ +++++
T Consensus 1 ~A~aL~~~g~--~~~v~g~d~~~~~~~~a~~-~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~-~~~~--~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGP--DVEVYGYDRDPETLEAALE-LGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEI-APYL--KPGAI 74 (258)
T ss_dssp HHHHHHHTTT--TSEEEEE-SSHHHHHHHHH-TTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHH-HCGS---TTSE
T ss_pred ChHHHHhCCC--CeEEEEEeCCHHHHHHHHH-CCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHh-hhhc--CCCcE
Confidence 5788999983 4699999999998877655 576 2233367899999999999999999999999 9988 88888
Q ss_pred EEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCCchh-----------hhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 157 IISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPNTAM-----------KYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 157 IVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn~p~-----------~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
|+++ ++++. +.+++.++ .+.+ ++..+|..-. .+.....++++.+..+. +..+.++.
T Consensus 75 v~Dv-~SvK~~~~~~~~~~~~------~~~~-~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~--~~~~~~~~ 144 (258)
T PF02153_consen 75 VTDV-GSVKAPIVEAMERLLP------EGVR-FVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP--EALELVEE 144 (258)
T ss_dssp EEE---S-CHHHHHHHHHHHT------SSGE-EEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H--HHHHHHHH
T ss_pred EEEe-CCCCHHHHHHHHHhcC------cccc-eeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH--HHHHHHHH
Confidence 8877 56664 44555555 3556 7888775322 11122456777766555 78999999
Q ss_pred HHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q psy316 223 IMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301 (341)
Q Consensus 223 ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~ 301 (341)
+++.+|..+ +++.+.||..+|++++.|++++.. ++....+.+.+......+...+++...++.. .
T Consensus 145 l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~a---l~~~~~~~~~~~~~~~~~a~~~frd~tRia~-----------~ 210 (258)
T PF02153_consen 145 LWEALGARVVEMDAEEHDRIMAYVSHLPHLLASA---LANTLAELSSDDPDILRLAGGGFRDMTRIAS-----------S 210 (258)
T ss_dssp HHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHH---HHHHHHHHHHHHHHHHHHGTHHHHHHHGGGG-----------S
T ss_pred HHHHCCCEEEEcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCChHHHHhhcchhHHhhccccc-----------C
Confidence 999999864 568999999999999999877664 3333333333455667777777777765543 4
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 302 HPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 302 ~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
+|+.|.+...++.....+.|..+.+
T Consensus 211 ~p~l~~~I~~~N~~~~~~~l~~~~~ 235 (258)
T PF02153_consen 211 DPELWADIFLSNPENLLEALDEFIK 235 (258)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHCHHHHHHHHHHHHH
Confidence 8999999988888878888888776
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=139.74 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=120.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-----------cCcC-----------CCc-cccChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-----------WPEP-----------MDF-ALNDNHRI 121 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-----------l~~~-----------~g~-~~~s~~e~ 121 (341)
+||+|||+|.||.+|+..|+++|+ +|++||+++++++. +.+. ++. ...+..+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM----DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH
Confidence 579999999999999999999994 99999999987653 2211 122 23344567
Q ss_pred hhcCCEEEEeeC--hHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMK--PQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~--~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
+++||+||+||| ++....++.++ .+.+ +++++|+|.++++++..+++.+. ...+ ++++++..|...+.
T Consensus 81 ~~~aD~Vieav~e~~~~k~~v~~~l-~~~~--~~~~il~s~tS~i~~~~l~~~~~------~~~r-~~g~h~~~pp~~~~ 150 (295)
T PLN02545 81 LRDADFIIEAIVESEDLKKKLFSEL-DRIC--KPSAILASNTSSISITRLASATQ------RPQQ-VIGMHFMNPPPIMK 150 (295)
T ss_pred hCCCCEEEEcCccCHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHhhcC------CCcc-eEEEeccCCcccCc
Confidence 899999999999 77777788888 7777 78889999999999999998876 3467 88998776666554
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
. +.++.++..++ +..+.++++|+.+|+.+++
T Consensus 151 l-veiv~g~~t~~--e~~~~~~~ll~~lG~~~~~ 181 (295)
T PLN02545 151 L-VEIIRGADTSD--EVFDATKALAERFGKTVVC 181 (295)
T ss_pred e-EEEeCCCCCCH--HHHHHHHHHHHHcCCeeEE
Confidence 3 45667766777 8999999999999997654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=137.72 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=135.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC-----------cCCC-------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP-----------EPMD-------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~-----------~~~g-------------~-~~~s~~ 119 (341)
++|+|||+|.||++|+..|+++|+ +|++|||+++..+... + .| + .+.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~----~V~v~d~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~~~~~~~~~i~~~~~~~ 77 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH----EVRLWDADPAAAAAAPAYIAGRLEDLAA-FDLLDGEAPDAVLARIRVTDSLA 77 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC----eeEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCchhhHHHHhcCeEEECcHH
Confidence 589999999999999999999995 9999999987666421 2 12 2 445777
Q ss_pred HHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
++++++|+||+|+|.. ....++.++ .... .++.+|.|.+.+.....+.+.+. ...+ ++..+|-.|...
T Consensus 78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l-~~~~--~~~~ii~ssts~~~~~~la~~~~------~~~~-~~~~hp~~p~~~ 147 (308)
T PRK06129 78 DAVADADYVQESAPENLELKRALFAEL-DALA--PPHAILASSTSALLASAFTEHLA------GRER-CLVAHPINPPYL 147 (308)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHHHH-HHhC--CCcceEEEeCCCCCHHHHHHhcC------Cccc-EEEEecCCCccc
Confidence 7889999999999964 455666777 6666 56667777777777888888776 3345 666666555432
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRI 276 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~l 276 (341)
. ....+++++..++ +.++.++++++.+|+. ++++.+....+.. ..+.+.+.|++.- +.+.|+++++..++
T Consensus 148 ~-~lveiv~~~~t~~--~~~~~~~~~~~~lG~~~v~v~~~~~G~i~n-----rl~~a~~~EA~~l-~~~g~~~~~~id~~ 218 (308)
T PRK06129 148 I-PVVEVVPAPWTAP--ATLARAEALYRAAGQSPVRLRREIDGFVLN-----RLQGALLREAFRL-VADGVASVDDIDAV 218 (308)
T ss_pred C-ceEEEeCCCCCCH--HHHHHHHHHHHHcCCEEEEecCCCccHHHH-----HHHHHHHHHHHHH-HHcCCCCHHHHHHH
Confidence 2 2445677666667 8999999999999986 4565443232111 1233444455433 35678999998887
Q ss_pred HHHHHH
Q psy316 277 GAQLLK 282 (341)
Q Consensus 277 v~~~~~ 282 (341)
+..++.
T Consensus 219 ~~~~~g 224 (308)
T PRK06129 219 IRDGLG 224 (308)
T ss_pred HHhccC
Confidence 765543
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=138.93 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=119.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------C--------Cc-cccChHHHhhcCCEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------M--------DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------~--------g~-~~~s~~e~~~~aDvI 128 (341)
+|||+|||+|+||++++..|.++| ++.+|.|+++..+.+++. + ++ ...+..+++..+|+|
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-----~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlV 81 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-----PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVV 81 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-----CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEE
Confidence 378999999999999999999987 478888998887665432 1 12 345666778899999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-------HHHHHhccccCCCCCCCCeEEEEcCCchhhhcCce
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-------ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI 201 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-------~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~ 201 (341)
|++||+++++++++++ ++++ ++++++|++++|+.. +.+++.++ .... .+..+||.+.++..|.
T Consensus 82 ilavps~~~~~vl~~i-~~~l--~~~~~vIsl~kGi~~~t~~~~se~i~~~l~------~~~~-~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 82 VMGVPSHGFRGVLTEL-AKEL--RPWVPVVSLVKGLEQGTNMRMSQIIEEVLP------GHPA-GILAGPNIAREVAEGY 151 (341)
T ss_pred EEEeCHHHHHHHHHHH-Hhhc--CCCCEEEEEEeCCcCCCCCcHHHHHHHHcC------CCCe-EEEECCCHHHHHHcCC
Confidence 9999999999999999 9988 788899999999985 46666665 2233 6688999999888775
Q ss_pred E--EEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 202 T--GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 202 ~--~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
. .+.... +. +..+.++++|+.-+..++++++
T Consensus 152 ~t~~via~~--~~--~~~~~v~~lf~~~~~~v~~s~D 184 (341)
T PRK12439 152 AAAAVLAMP--DQ--HLATRLSPLFRTRRFRVYTTDD 184 (341)
T ss_pred CeEEEEEeC--CH--HHHHHHHHHhCCCCEEEEEcCc
Confidence 2 222222 34 6778899999998887777655
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=134.04 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=121.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-----------ccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-----------LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-----------~~s~~e~~~~aDvIilaV 132 (341)
|||+|||+|+||+.++..|.++|+ +|++++|++++.+.+.++ |. . ..+..++ ..+|+||+||
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~----~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH----DVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAEL-GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhHc-CCCCEEEEec
Confidence 589999999999999999999984 999999988887766552 33 1 2334443 8899999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhccccCCCCCCCCeEE---------EEcCCchhhhcCceE
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPNDAPTII---------RVMPNTAMKYGKGIT 202 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~~~~~~~~~~~~vv---------r~mpn~p~~v~~g~~ 202 (341)
|+.++.++++++ .+.+ .++++||++.+|+. .+.+.+.++. .. ++ +..|+.....+.|..
T Consensus 75 k~~~~~~~~~~l-~~~l--~~~~~iv~~~nG~~~~~~l~~~~~~-------~~-i~~~~~~~~~~~~~p~~v~~~~~g~~ 143 (304)
T PRK06522 75 KAYQLPAALPSL-APLL--GPDTPVLFLQNGVGHLEELAAYIGP-------ER-VLGGVVTHAAELEGPGVVRHTGGGRL 143 (304)
T ss_pred ccccHHHHHHHH-hhhc--CCCCEEEEecCCCCcHHHHHHhcCc-------cc-EEEEEEEEeeEecCCCEEEEcCCCCE
Confidence 999999999999 9888 77889999999998 5667776661 22 22 334555555555655
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchHH
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGCA 250 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gpa 250 (341)
.+...+. .. +..+.+.++|+..|..+++.++ .++.++++.++.+.
T Consensus 144 ~ig~~~~-~~--~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g 201 (304)
T PRK06522 144 KIGEPDG-ES--AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNG 201 (304)
T ss_pred EEeCCCC-Cc--HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChh
Confidence 4443322 22 4467788889988877666554 45678888887544
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=137.55 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=121.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-----C--------C-------------c-cccC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-----M--------D-------------F-ALND 117 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-----~--------g-------------~-~~~s 117 (341)
+||+|||+|.||.+|+..|.++|+ +|++||+++++++...+. + | + ..++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~----~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY----DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC----eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 589999999999999999999995 999999999876532110 0 1 1 1223
Q ss_pred hHHHhhcCCEEEEeeChHH--HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchh
Q psy316 118 NHRIIKEAEYVFLAMKPQY--LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAM 195 (341)
Q Consensus 118 ~~e~~~~aDvIilaV~~~~--v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~ 195 (341)
. +.+++||+||+|+|++. ..++++++ .+.+ +++++|+|.++|+++..+.+.+. ...+ +++.+++.|.
T Consensus 80 ~-~~~~~aDlVieav~e~~~~k~~~~~~l-~~~~--~~~~il~S~tsg~~~~~la~~~~------~~~r-~ig~hf~~P~ 148 (291)
T PRK06035 80 Y-ESLSDADFIVEAVPEKLDLKRKVFAEL-ERNV--SPETIIASNTSGIMIAEIATALE------RKDR-FIGMHWFNPA 148 (291)
T ss_pred H-HHhCCCCEEEEcCcCcHHHHHHHHHHH-HhhC--CCCeEEEEcCCCCCHHHHHhhcC------Cccc-EEEEecCCCc
Confidence 3 56789999999998764 66788888 8888 78899999999999999998886 4567 9999999888
Q ss_pred hhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcC
Q psy316 196 KYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIP 234 (341)
Q Consensus 196 ~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~ 234 (341)
.+..++.+ ..++..++ +.++.+.++++.+|+.. ++.
T Consensus 149 ~~~~~vEv-~~g~~T~~--e~~~~~~~~~~~lgk~~v~v~ 185 (291)
T PRK06035 149 PVMKLIEV-VRAALTSE--ETFNTTVELSKKIGKIPIEVA 185 (291)
T ss_pred ccCccEEE-eCCCCCCH--HHHHHHHHHHHHcCCeEEEeC
Confidence 77766654 46777777 99999999999999865 454
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-14 Score=131.72 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=115.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDNH 119 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~~ 119 (341)
.+||+|||+|.||.+|+..|+.+|+ +|++|||++++++.+.+. .| + ...+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 78 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY----DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL- 78 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-
Confidence 4689999999999999999999995 999999999887653210 02 2 23444
Q ss_pred HHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+.+++||+||+|+|.+ ..+.++.++ .+.+ +++++|+|.++++++..+++.+. ...+ ++.+++-.|...
T Consensus 79 ~~~~~aD~Vieavpe~~~~k~~~~~~l-~~~~--~~~~ii~s~ts~~~~s~la~~~~------~~~r-~~g~h~~~p~~~ 148 (292)
T PRK07530 79 EDLADCDLVIEAATEDETVKRKIFAQL-CPVL--KPEAILATNTSSISITRLASATD------RPER-FIGIHFMNPVPV 148 (292)
T ss_pred HHhcCCCEEEEcCcCCHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------Cccc-EEEeeccCCccc
Confidence 4578999999999853 456677888 8888 88899999999999988888765 3356 666555445444
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
..++ -+..+...++ +.++.+.++|+.+|+..++
T Consensus 149 ~~~v-ei~~g~~t~~--~~~~~~~~~~~~~gk~~v~ 181 (292)
T PRK07530 149 MKLV-ELIRGIATDE--ATFEAAKEFVTKLGKTITV 181 (292)
T ss_pred CceE-EEeCCCCCCH--HHHHHHHHHHHHcCCeEEE
Confidence 4444 4566666777 9999999999999987544
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=130.81 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=107.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------C-------Cc-cccChHHHh-hcCCEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------M-------DF-ALNDNHRII-KEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------~-------g~-~~~s~~e~~-~~aDvIi 129 (341)
|||+|||+|+||++++..|.++| ++|++|+|+++..+.+++. . ++ ...+..+.+ ..+|+||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g----~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dlii 76 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK----ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCII 76 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC----CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEE
Confidence 58999999999999999999998 4999999998877665431 0 12 234555655 5899999
Q ss_pred EeeChHHHHHHHHHhhhc-ccccCCCcEEEEecCCCCH-------HHHHHhccccCCCCCCCCeEE-EEcCCchhhhcCc
Q psy316 130 LAMKPQYLDSAIQGLVND-KVTLNSSRCIISMLVGVDL-------ETLKKKLSVLVPNPNDAPTII-RVMPNTAMKYGKG 200 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~-~l~~~~~~iIVs~~agi~~-------~~l~~~l~~~~~~~~~~~~vv-r~mpn~p~~v~~g 200 (341)
++||++++.++++++ ++ ++ .+++.||++++|+.. +.+.+.++ ..+ +. ...|+.+.+...+
T Consensus 77 iavks~~~~~~l~~l-~~~~l--~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~-------~~~-~~~~~Gp~~a~~~~~~ 145 (326)
T PRK14620 77 LAVPTQQLRTICQQL-QDCHL--KKNTPILICSKGIEKSSLKFPSEIVNEILP-------NNP-IAILSGPSFAKEIAEK 145 (326)
T ss_pred EEeCHHHHHHHHHHH-HHhcC--CCCCEEEEEEcCeeCCCCccHHHHHHHHcC-------CCc-eEeecCCcHHHHHHcC
Confidence 999999999999999 88 88 777788889999864 45566665 234 33 3346644444333
Q ss_pred -eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 201 -ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 201 -~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
.+.+.... .+. +..+.+.++|+.-+..++++++
T Consensus 146 ~~~~~~~~~-~~~--~~~~~l~~~l~~~~~~~~~~~D 179 (326)
T PRK14620 146 LPCSIVLAG-QNE--TLGSSLISKLSNENLKIIYSQD 179 (326)
T ss_pred CCcEEEEec-CCH--HHHHHHHHHHCCCCeEEEecCc
Confidence 22222221 123 4556777788777777776654
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-13 Score=128.17 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=120.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------------------------CCc-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------------------------MDF-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------------------------~g~-~~~s~~ 119 (341)
+||+|||+|.||.+||..|..+|+ +|++|++++++++.+.+. .++ .+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~----~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF----DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 589999999999999999999984 999999998766544321 022 356677
Q ss_pred HHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+++++||+||.|+|.+ ...++++++ .+.+ +++++|++..++++++.+.+.+. ...+ ++..+|..|...
T Consensus 80 ~a~~~aDlVieavpe~~~~k~~~~~~l-~~~~--~~~~ii~sntSt~~~~~~~~~~~------~~~r-~vg~Hf~~p~~~ 149 (287)
T PRK08293 80 EAVKDADLVIEAVPEDPEIKGDFYEEL-AKVA--PEKTIFATNSSTLLPSQFAEATG------RPEK-FLALHFANEIWK 149 (287)
T ss_pred HHhcCCCEEEEeccCCHHHHHHHHHHH-HhhC--CCCCEEEECcccCCHHHHHhhcC------Cccc-EEEEcCCCCCCc
Confidence 7889999999999954 677888888 8888 77888888888888888888776 3457 788887666443
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCc
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESM 237 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~ 237 (341)
. ....++.++..++ +..+.+.++++.+|+.. .+..+.
T Consensus 150 ~-~lvevv~~~~t~~--~~~~~~~~~~~~~Gk~pv~v~~d~ 187 (287)
T PRK08293 150 N-NTAEIMGHPGTDP--EVFDTVVAFAKAIGMVPIVLKKEQ 187 (287)
T ss_pred C-CeEEEeCCCCCCH--HHHHHHHHHHHHcCCeEEEecCCC
Confidence 2 3445666777777 89999999999999864 454343
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=129.41 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=117.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------C-------------Cc-cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------M-------------DF-ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~-------------g~-~~~s~~e 120 (341)
+||+|||+|.||..||..|.++|+ +|++||+++++++.+.+. . ++ .+.+..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF----QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKA 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHH
Confidence 589999999999999999999995 999999999887765421 0 12 3456678
Q ss_pred HhhcCCEEEEeeChHH--HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 121 IIKEAEYVFLAMKPQY--LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~--v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
.+++||+||+|+|.+. ...++.++ .+.+ +++++|++.+++++++.+.+.+. ...+ .+..++-.|...+
T Consensus 78 ~~~~aD~Vi~avpe~~~~k~~~~~~l-~~~~--~~~~il~~~tSt~~~~~l~~~~~------~~~r-~~g~h~~~Pv~~~ 147 (288)
T PRK09260 78 AVADADLVIEAVPEKLELKKAVFETA-DAHA--PAECYIATNTSTMSPTEIASFTK------RPER-VIAMHFFNPVHKM 147 (288)
T ss_pred hhcCCCEEEEeccCCHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------Cccc-EEEEecCCCcccC
Confidence 8999999999999653 34566778 7777 78888877888899998888776 3345 5555555455433
Q ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCC
Q psy316 199 KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPE 235 (341)
Q Consensus 199 ~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e 235 (341)
....+++++..++ +.++.++++++.+|+.. ++.+
T Consensus 148 -~Lve~v~g~~t~~--~~~~~~~~~l~~lg~~~v~v~d 182 (288)
T PRK09260 148 -KLVELIRGLETSD--ETVQVAKEVAEQMGKETVVVNE 182 (288)
T ss_pred -ceEEEeCCCCCCH--HHHHHHHHHHHHcCCeEEEecC
Confidence 3556777776777 99999999999999864 4553
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-13 Score=127.64 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=120.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-----C--------Cc-cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-----M--------DF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-----~--------g~-~~~s~~e~~~~aDvIi 129 (341)
++||+|||+|++|++||..|.++| ++|.+|.|+++..+++.+. | ++ .+.|..++++++|+|+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng----~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv 76 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG----HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIV 76 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC----CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEE
Confidence 368999999999999999999999 4999999999888877653 1 13 4678889999999999
Q ss_pred EeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-------HHHHHhccccCCCCCCCCeEEEEcCCchhhhcCce-
Q psy316 130 LAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-------ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI- 201 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-------~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~- 201 (341)
++||.+.++++++++ ++++ .+++++|+++.|+.. +.+++.++ ..++.+-..||.+.++.+|.
T Consensus 77 ~avPs~~~r~v~~~l-~~~l--~~~~~iv~~sKGie~~t~~l~seii~e~l~-------~~~~~vLSGPs~A~EVa~g~p 146 (329)
T COG0240 77 IAVPSQALREVLRQL-KPLL--LKDAIIVSATKGLEPETGRLLSEIIEEELP-------DNPIAVLSGPSFAKEVAQGLP 146 (329)
T ss_pred EECChHHHHHHHHHH-hhhc--cCCCeEEEEeccccCCCcchHHHHHHHHcC-------CCeEEEEECccHHHHHhcCCC
Confidence 999999999999999 8888 899999999999875 34455565 22325567799999988773
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
+.++... .+. +..+.++.+|..=-..++.+++
T Consensus 147 ta~~vas-~d~--~~a~~v~~~f~~~~Frvy~~~D 178 (329)
T COG0240 147 TAVVVAS-NDQ--EAAEKVQALFSSPYFRVYTSTD 178 (329)
T ss_pred cEEEEec-CCH--HHHHHHHHHhCCCcEEEEecCc
Confidence 3333221 223 6777888999874445555555
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-15 Score=125.24 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=76.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
.+||+|||+|++|.+|++.|.++|+ .|. +++|++++.+.++..++. ...+..+.+.++|+|||+||++.+.++.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~----~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va 85 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH----EVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVA 85 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS----EEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHH
Confidence 5799999999999999999999995 664 678998888887775555 5556778899999999999999999999
Q ss_pred HHhhhcc--cccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 142 QGLVNDK--VTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~--l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+++ ... + +++++|+++++..+.+.|+..-.
T Consensus 86 ~~L-a~~~~~--~~g~iVvHtSGa~~~~vL~p~~~ 117 (127)
T PF10727_consen 86 EQL-AQYGAW--RPGQIVVHTSGALGSDVLAPARE 117 (127)
T ss_dssp HHH-HCC--S---TT-EEEES-SS--GGGGHHHHH
T ss_pred HHH-HHhccC--CCCcEEEECCCCChHHhhhhHHH
Confidence 999 776 6 78999999999888888776554
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-14 Score=124.69 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=113.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+|+|+|||+|+||+++++.|.++|+ +|.+.+| .+++.+...+.++. ...++.++++.+||||++||...+.++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~----eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v 76 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH----EVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDV 76 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC----eEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhH
Confidence 4789999999999999999999995 8888855 55556655554444 566889999999999999999999999
Q ss_pred HHHhhhcccccCCCcEEEEecCCCC-----------------HHHHHHhccccCCCCCCCCeEEEEcCCchhhh-----c
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVD-----------------LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY-----G 198 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~-----------------~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v-----~ 198 (341)
+.++ +..+ .+++||++++.+. .+.+++.++ +.+ +|+.+.+.+... .
T Consensus 77 ~~~l-~~~~---~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp-------~ak-VVkAFn~i~a~~l~~~~~ 144 (211)
T COG2085 77 LAEL-RDAL---GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLP-------GAK-VVKAFNTIPAAVLADLAK 144 (211)
T ss_pred HHHH-HHHh---CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCC-------Ccc-hhhhhcccCHHHhccCCC
Confidence 9999 8877 4899999988742 134555665 457 888887766543 1
Q ss_pred --CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE
Q psy316 199 --KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE 231 (341)
Q Consensus 199 --~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~ 231 (341)
....+++++++ . +..+.|.+|.+.+|...
T Consensus 145 ~~~~~~v~vagDD--~--~Ak~~v~~L~~~iG~~~ 175 (211)
T COG2085 145 PGGRRDVLVAGDD--A--EAKAVVAELAEDIGFRP 175 (211)
T ss_pred cCCceeEEEecCc--H--HHHHHHHHHHHhcCcce
Confidence 12344555542 4 78999999999999753
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=129.15 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=121.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
.|||+|||+|+||++|++.|.++|+ +|++|+|++. .+..++++++|+||+|+|..++++++++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~----~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~~~ 66 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH----RVRVWSRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVAEQ 66 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC----EEEEEeCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHHHH
Confidence 4689999999999999999999994 9999999753 2567788899999999999999999998
Q ss_pred hhhcc-cccCCCcEEEEecCCCCHHH-------HHHhccccCCCCCCCCeEEE-EcCCchhhhcCc--eEEEEeCCCCCc
Q psy316 144 LVNDK-VTLNSSRCIISMLVGVDLET-------LKKKLSVLVPNPNDAPTIIR-VMPNTAMKYGKG--ITGMCHDVHLDK 212 (341)
Q Consensus 144 i~~~~-l~~~~~~iIVs~~agi~~~~-------l~~~l~~~~~~~~~~~~vvr-~mpn~p~~v~~g--~~~l~~~~~~~~ 212 (341)
+ .++ + .++++||++++|++.+. ++..+. +.+ ++. ..|+.+..+..+ ...+..+. +.
T Consensus 67 l-~~~~~--~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~-------~~~-v~~i~gp~~a~ei~~~~~~~~~~ag~--~~ 133 (308)
T PRK14619 67 V-QALNL--PPETIIVTATKGLDPETTRTPSQIWQAAFP-------NHP-VVVLSGPNLSKEIQQGLPAATVVASR--DL 133 (308)
T ss_pred H-HHhcC--CCCcEEEEeCCcccCCCCcCHHHHHHHHcC-------CCc-eEEEECCCcHHHHhcCCCeEEEEEeC--CH
Confidence 8 764 6 67889999888776432 222333 345 543 235555444333 22333332 24
Q ss_pred cHHHHHHHHHHHHhcCCeEEcCCCchh--------HHHHH-hc-------chHHHHHHHHHHHHHH---HHHcCCCHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIVEIIPESMMN--------SFGAI-AG-------SGCAYLFLVMDAMADG---AVKQGIPRDMA 273 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~~~v~e~~~d--------~~~al-~g-------~gpa~~~~~~eal~ea---~~~~Gl~~~~a 273 (341)
+..+.++++|+..|..++.+.+... .+.++ +| ..+.....+..++.|. +.+.|++++.+
T Consensus 134 --~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~ 211 (308)
T PRK14619 134 --AAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETF 211 (308)
T ss_pred --HHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 7889999999999977664333111 11111 11 0122334455555554 45889998888
Q ss_pred HHH
Q psy316 274 LRI 276 (341)
Q Consensus 274 ~~l 276 (341)
.++
T Consensus 212 ~~~ 214 (308)
T PRK14619 212 YGL 214 (308)
T ss_pred ccc
Confidence 764
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-13 Score=124.07 Aligned_cols=211 Identities=16% Similarity=0.197 Sum_probs=143.1
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhcCCCCCCeEEEEcCChhhhh-----hcCcCCCc-cccCh
Q psy316 65 TKVGFIGAGNM--------------------AQAVATSLIRTGLCIPAQIIASAPSERFKL-----HWPEPMDF-ALNDN 118 (341)
Q Consensus 65 ~kIgiIG~G~m--------------------G~aia~~L~~~G~~~~~~V~v~~r~~e~~~-----~l~~~~g~-~~~s~ 118 (341)
|||.+.|+||- |.+||++|+++|+ +|++|||++++.+ .+.+ .|+ .+.+.
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh----eV~V~Drnrsa~e~e~~e~Lae-aGA~~AaS~ 75 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH----DVVLAEPNREFMSDDLWKKVED-AGVKVVSDD 75 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC----EEEEEeCChhhhhhhhhHHHHH-CCCeecCCH
Confidence 57888888873 7899999999995 9999999876543 4555 588 77789
Q ss_pred HHHhhcCCEEEEeeCh-HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCC-CCCCCCeEEEEcCC-chh
Q psy316 119 HRIIKEAEYVFLAMKP-QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVP-NPNDAPTIIRVMPN-TAM 195 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~-~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~-~~~~~~~vvr~mpn-~p~ 195 (341)
.++++++|+||+|+|. .++++|+.++ .+.+ +++++||++ ++++++.+.+.|..... .+.+.. |..++|. .|.
T Consensus 76 aEAAa~ADVVIL~LPd~aaV~eVl~GL-aa~L--~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~-v~s~HP~~vP~ 150 (341)
T TIGR01724 76 KEAAKHGEIHVLFTPFGKGTFSIARTI-IEHV--PENAVICNT-CTVSPVVLYYSLEKILRLKRTDVG-ISSMHPAAVPG 150 (341)
T ss_pred HHHHhCCCEEEEecCCHHHHHHHHHHH-HhcC--CCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccC-eeccCCCCCCC
Confidence 9999999999999996 5688998888 7888 889999987 66787776655542110 113344 5555553 333
Q ss_pred hhcCceEEEEeC-----CCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHH---HH-HH
Q psy316 196 KYGKGITGMCHD-----VHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMAD---GA-VK 265 (341)
Q Consensus 196 ~v~~g~~~l~~~-----~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~e---a~-~~ 265 (341)
.-+++..++... .-.++ ++.+++.+|.++.|.. +.++.+.+..+.-+.+...+ ....++.+ .+ .-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~A~e--e~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta---~~~~gil~y~~~~t~i 225 (341)
T TIGR01724 151 TPQHGHYVIGGKPTAGKEMATE--EQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTA---VALAGVLDYYYVGTQI 225 (341)
T ss_pred CCCCceeeeccccccccccCCH--HHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 334544333211 11355 8999999999999876 45677766555544332222 22222222 23 35
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 266 QGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 266 ~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.|-|.+-+.+.+..++.-.+.+++.
T Consensus 226 ~~ap~~~~~~~~~~~l~~~a~l~~~ 250 (341)
T TIGR01724 226 INAPKEMIEKQILMTLQTMASLVET 250 (341)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887777777765
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=129.21 Aligned_cols=147 Identities=14% Similarity=0.233 Sum_probs=102.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c----------------ccChHHHhhcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A----------------LNDNHRIIKEA 125 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~----------------~~s~~e~~~~a 125 (341)
|+|||+|||+|.||+.++..|.++|+ +|++++|++. .+.+++ .|. . ..+..+.+..+
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~----~V~~~~r~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGA----DVTLIGRARI-GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDPAALATA 74 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCC----cEEEEecHHH-HHHHHh-cCceeecCCCcceecccceeEeccChhhccCC
Confidence 67899999999999999999999994 9999999753 344433 222 1 12223567799
Q ss_pred CEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhccccCCCCCCCCeEEEE---------cCCchh
Q psy316 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPNDAPTIIRV---------MPNTAM 195 (341)
Q Consensus 126 DvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~~~~~~~~~~~~vvr~---------mpn~p~ 195 (341)
|+||+|||+.++.++++++ .+.+ .++++|+++.+|+. .+.+++.++ . .. ++.. -|....
T Consensus 75 D~vil~vk~~~~~~~~~~l-~~~~--~~~~iii~~~nG~~~~~~l~~~~~------~-~~-~~~g~~~~~~~~~~pg~~~ 143 (341)
T PRK08229 75 DLVLVTVKSAATADAAAAL-AGHA--RPGAVVVSFQNGVRNADVLRAALP------G-AT-VLAGMVPFNVISRGPGAFH 143 (341)
T ss_pred CEEEEEecCcchHHHHHHH-HhhC--CCCCEEEEeCCCCCcHHHHHHhCC------C-Cc-EEEEEEEEEEEecCCceEE
Confidence 9999999999999999999 8888 78899999999988 466777776 2 22 2221 112111
Q ss_pred hhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 196 KYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 196 ~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
....|...+ +. . +..+.+.++|+..|..+.+
T Consensus 144 ~~~~g~l~~--~~---~--~~~~~~~~~l~~~g~~~~~ 174 (341)
T PRK08229 144 QGTSGALAI--EA---S--PALRPFAAAFARAGLPLVT 174 (341)
T ss_pred ecCCCceEe--cC---C--chHHHHHHHHHhcCCCcee
Confidence 122333222 22 1 4467889999999976555
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.4e-13 Score=130.87 Aligned_cols=195 Identities=12% Similarity=0.098 Sum_probs=125.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------------------CC-c-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------------------MD-F-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------------------~g-~-~~~s~~e~~~~ 124 (341)
|||+|||+|.||..+|..|.++|+ +|++||+++++.+.+++. .| + .+.+..+++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~----~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH----EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRD 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC----eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhh
Confidence 589999999999999999999995 999999999998877641 13 3 45567778899
Q ss_pred CCEEEEeeChH----------HHHHHHHHhhhcccccCCCcEEEEecCCCCHH---HHH-HhccccCCC--CCCCCeEEE
Q psy316 125 AEYVFLAMKPQ----------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE---TLK-KKLSVLVPN--PNDAPTIIR 188 (341)
Q Consensus 125 aDvIilaV~~~----------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~---~l~-~~l~~~~~~--~~~~~~vvr 188 (341)
+|+||+|||.. .+.+++.++ .+.+ +++++||.. +++++. .+. ..+....+. ..+.+ +.
T Consensus 77 advvii~vpt~~~~~~~~d~~~v~~~~~~i-~~~l--~~g~lvi~~-STv~pgt~~~l~~~~~~~~~g~~~~~d~~--v~ 150 (411)
T TIGR03026 77 ADVIIICVPTPLKEDGSPDLSYVESAAETI-AKHL--RKGATVVLE-STVPPGTTEEVVKPILERASGLKLGEDFY--LA 150 (411)
T ss_pred CCEEEEEeCCCCCCCCCcChHHHHHHHHHH-HHhc--CCCCEEEEe-CcCCCCchHHHHHHHHHhhcCCCCCCCce--EE
Confidence 99999999843 478888888 8888 788888865 455432 332 222210000 01112 22
Q ss_pred EcCCchhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHhcC--CeEEcCCCchhHHHHHhcchHHHHHHHHH
Q psy316 189 VMPNTAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQGG--IVEIIPESMMNSFGAIAGSGCAYLFLVMD 257 (341)
Q Consensus 189 ~mpn~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~lG--~~~~v~e~~~d~~~al~g~gpa~~~~~~e 257 (341)
..|. ....|. .++..+ ++ +..+.++++|+.++ .+++++...-..++.+.. +.|.+..+.
T Consensus 151 ~~Pe---~~~~G~~~~~~~~~~~iv~G~---~~--~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~--N~~~a~~ia 220 (411)
T TIGR03026 151 YNPE---FLREGNAVHDLLNPDRIVGGE---TE--EAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAE--NTFRAVKIA 220 (411)
T ss_pred ECCC---cCCCCChhhhhcCCCEEEEeC---CH--HHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHH--HHHHHHHHH
Confidence 3332 222232 344443 34 78899999999996 345555433333444432 345444444
Q ss_pred HHHH---HHHHcCCCHHHHHHHHHH
Q psy316 258 AMAD---GAVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 258 al~e---a~~~~Gl~~~~a~~lv~~ 279 (341)
.+.| .+.+.|++.++..+++..
T Consensus 221 ~~nE~~~la~~~GiD~~~v~~~~~~ 245 (411)
T TIGR03026 221 FANELARICEALGIDVYEVIEAAGT 245 (411)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 4444 356899999988877653
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-14 Score=120.29 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=92.8
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------------Cc-cccChHHHhhcCCEEEEe
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------------DF-ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------------g~-~~~s~~e~~~~aDvIila 131 (341)
||+|||+|+||+++|..|.++| ++|++|.|+++..+.+.+.. ++ .+.|.+++++++|+||++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g----~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG----HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT----EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcC----CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec
Confidence 7999999999999999999999 59999999998877665421 23 567788999999999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-------HHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCc
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-------LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKG 200 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-------~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g 200 (341)
||.+.++++++++ ++++ +++++||++..|+. .+.+++.++ . .++.+-..|+.+.++..+
T Consensus 77 vPs~~~~~~~~~l-~~~l--~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~------~-~~~~~lsGP~~A~Ei~~~ 142 (157)
T PF01210_consen 77 VPSQAHREVLEQL-APYL--KKGQIIISATKGFEPGTLLLLSEVIEEILP------I-PRIAVLSGPSFAEEIAEG 142 (157)
T ss_dssp S-GGGHHHHHHHH-TTTS--HTT-EEEETS-SEETTEEEEHHHHHHHHHS------S-CGEEEEESS--HHHHHTT
T ss_pred ccHHHHHHHHHHH-hhcc--CCCCEEEEecCCcccCCCccHHHHHHHHhh------h-cceEEeeCccHHHHHHcC
Confidence 9999999999999 9999 88999999999983 245566676 2 222556678988888766
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-12 Score=124.21 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=112.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCC---CCeEEEEcCChh-----hhhhcCcC-----C--------Cc-cccChHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCI---PAQIIASAPSER-----FKLHWPEP-----M--------DF-ALNDNHRI 121 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e-----~~~~l~~~-----~--------g~-~~~s~~e~ 121 (341)
++||+|||+|+||++||..|.++|..+ .++|.+|.|+++ ..+.+.+. + ++ .++++.++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 468999999999999999999887211 258999999875 24444321 1 23 45677888
Q ss_pred hhcCCEEEEeeChHHHHHHHHHhhhc--ccccCCCcEEEEecCCCCHHH---------HHHhccccCCCCCCCCeEEEEc
Q psy316 122 IKEAEYVFLAMKPQYLDSAIQGLVND--KVTLNSSRCIISMLVGVDLET---------LKKKLSVLVPNPNDAPTIIRVM 190 (341)
Q Consensus 122 ~~~aDvIilaV~~~~v~~vl~~i~~~--~l~~~~~~iIVs~~agi~~~~---------l~~~l~~~~~~~~~~~~vvr~m 190 (341)
++++|+||++||++.++++++++ ++ .+ .++++|||+++|+..++ +++.++ .++.+-..
T Consensus 91 v~~aDiIvlAVPsq~l~~vl~~l-~~~~~l--~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~--------~~~~~LsG 159 (365)
T PTZ00345 91 VEDADLLIFVIPHQFLESVLSQI-KENNNL--KKHARAISLTKGIIVENGKPVLCSDVIEEELG--------IPCCALSG 159 (365)
T ss_pred HhcCCEEEEEcChHHHHHHHHHh-cccccc--CCCCEEEEEeCCcccCCCCcccHHHHHHHHhC--------CCeEEEEC
Confidence 99999999999999999999999 88 77 66779999999987532 233333 24134567
Q ss_pred CCchhhhcCce-EEEE-eCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 191 PNTAMKYGKGI-TGMC-HDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 191 pn~p~~v~~g~-~~l~-~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
||++.++..|. +.++ .+. +. +....++++|+.=-..++.+++
T Consensus 160 Ps~A~Eva~~~pt~~vias~--~~--~~a~~~~~lf~~~~frvy~s~D 203 (365)
T PTZ00345 160 ANVANDVAREEFSEATIGCE--DK--DDALIWQRLFDRPYFKINCVPD 203 (365)
T ss_pred CCHHHHHHcCCCcEEEEEeC--CH--HHHHHHHHHhCCCcEEEEEcCC
Confidence 99998887763 2222 222 23 6777888899764445555544
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=123.29 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=105.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--------------cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--------------ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--------------~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|.||+.++..|.++|+ +|++++| +++.+.+++ .|+ ...+..+....+|+||+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~----~V~~~~r-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR----DVTFLVR-PKRAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC----ceEEEec-HHHHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 589999999999999999999984 9999999 777776655 232 12344455578999999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhccccCCCCCCCCeEEEE---cCC---chhhh---cCc
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPNDAPTIIRV---MPN---TAMKY---GKG 200 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~~~~~~~~~~~~vvr~---mpn---~p~~v---~~g 200 (341)
|||+.+++++++++ ++.+ .++++||++.+|+. .+.+.+.++ . .+ ++.. ++. .|..+ +.+
T Consensus 75 avk~~~~~~~~~~l-~~~~--~~~~~ii~~~nG~~~~~~l~~~~~------~-~~-v~~g~~~~~~~~~~~g~v~~~~~~ 143 (305)
T PRK12921 75 AVKAYQLDAAIPDL-KPLV--GEDTVIIPLQNGIGQLEQLEPYFG------R-ER-VLGGVVFISAQLNGDGVVVQRADH 143 (305)
T ss_pred EecccCHHHHHHHH-Hhhc--CCCCEEEEeeCCCChHHHHHHhCC------c-cc-EEEEEEEEEEEECCCeEEEEcCCC
Confidence 99999999999999 8888 77889999999997 567777776 2 23 3321 111 11111 112
Q ss_pred eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 201 ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 201 ~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
...+...+.... +..+.+.++|+..|..+++.++
T Consensus 144 ~~~iG~~~~~~~--~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 144 RLTFGEIPGQRS--ERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred cEEEcCCCCCcC--HHHHHHHHHHHhCCCCceecHH
Confidence 222221112223 5667788889988877666543
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-12 Score=128.89 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=130.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc-----------CcCCC-------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW-----------PEPMD-------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l-----------~~~~g-------------~-~~~s~~ 119 (341)
.||+|||+|.||..||..|+.+|+ +|++||++++.+++. .+ .| + .+.+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~----~V~l~D~~~e~l~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~~~~ 82 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH----TVLLYDARAGAAAAARDGIAARLAKLVE-KGKLTAEQADAALARLRPVEALA 82 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHhCeEEeCCHH
Confidence 579999999999999999999995 999999999987763 22 13 3 345554
Q ss_pred HHhhcCCEEEEeeCh-HHHHHH-HHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKP-QYLDSA-IQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~-~~v~~v-l~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+ +.+||+||.||+. ..++.. +.++ ...+ +++.++.|.+++++++.+++.+. ...+ ++..+.-.|+.+
T Consensus 83 ~-~~~aDlViEav~E~~~vK~~vf~~l-~~~~--~~~ailasntStl~i~~la~~~~------~p~r-~~G~hff~Pa~v 151 (507)
T PRK08268 83 D-LADCDLVVEAIVERLDVKQALFAQL-EAIV--SPDCILATNTSSLSITAIAAALK------HPER-VAGLHFFNPVPL 151 (507)
T ss_pred H-hCCCCEEEEcCcccHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHhhcC------Cccc-EEEEeecCCccc
Confidence 4 6699999999985 456654 4667 6666 77888888889999998888776 3456 666665444444
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCC-CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPE-SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALR 275 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e-~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~ 275 (341)
. ..+.++.++..++ +.++.+.++++.+|+.. ++.+ ..+ + .+ -.+...+.|++.- +.+.|.++++..+
T Consensus 152 ~-~LvEvv~g~~Ts~--~~~~~~~~l~~~lgk~pv~v~d~pGf--i----~N-rll~~~~~Ea~~l-~~~g~~~~~~iD~ 220 (507)
T PRK08268 152 M-KLVEVVSGLATDP--AVADALYALARAWGKTPVRAKDTPGF--I----VN-RAARPYYTEALRV-LEEGVADPATIDA 220 (507)
T ss_pred C-eeEEEeCCCCCCH--HHHHHHHHHHHHcCCceEEecCCCCh--H----HH-HHHHHHHHHHHHH-HHcCCCCHHHHHH
Confidence 3 3556677766777 99999999999999864 4543 221 0 00 0111233333332 2345577777777
Q ss_pred HHHHHH
Q psy316 276 IGAQLL 281 (341)
Q Consensus 276 lv~~~~ 281 (341)
++...+
T Consensus 221 al~~~~ 226 (507)
T PRK08268 221 ILREAA 226 (507)
T ss_pred HHHhcC
Confidence 665433
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.8e-12 Score=124.27 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----Cc-cccChHHHhhc---CCEEEEeeCh-HHHHHHHHHhh
Q psy316 75 MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----DF-ALNDNHRIIKE---AEYVFLAMKP-QYLDSAIQGLV 145 (341)
Q Consensus 75 mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g~-~~~s~~e~~~~---aDvIilaV~~-~~v~~vl~~i~ 145 (341)
||..|+++|+++|+ +|.+|||++++.+.+.++. |+ .+.+++++++. +|+||+|||. ..+++|+.++
T Consensus 1 MG~~mA~nL~~~G~----~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l- 75 (459)
T PRK09287 1 MGKNLALNIASHGY----TVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQL- 75 (459)
T ss_pred CcHHHHHHHHhCCC----eEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHH-
Confidence 89999999999995 9999999999999887632 46 67888988874 8999999996 6889999999
Q ss_pred hcccccCCCcEEEEecCCCCHHHH--HHhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 146 NDKVTLNSSRCIISMLVGVDLETL--KKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 146 ~~~l~~~~~~iIVs~~agi~~~~l--~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
.+.+ .++.+||++.+....+.. .+.+.. .+.. ++.+ +...+.....|.+++..|+ + +.++.+++
T Consensus 76 ~~~l--~~GdiiID~gn~~~~~t~~~~~~l~~-----~Gi~-fvdapVSGG~~gA~~G~siM~GG~---~--~a~~~~~p 142 (459)
T PRK09287 76 LPLL--EKGDIIIDGGNSNYKDTIRREKELAE-----KGIH-FIGMGVSGGEEGALHGPSIMPGGQ---K--EAYELVAP 142 (459)
T ss_pred HhcC--CCCCEEEECCCCCHHHHHHHHHHHHh-----cCCe-EEecCCCCCHHHHhcCCEEEEeCC---H--HHHHHHHH
Confidence 8888 889999998655443332 233321 2333 3322 1223334456777676664 4 88999999
Q ss_pred HHHhcCCe--------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHH---H-HcCCCHHHHHHHHH
Q psy316 223 IMEQGGIV--------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGA---V-KQGIPRDMALRIGA 278 (341)
Q Consensus 223 ll~~lG~~--------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~---~-~~Gl~~~~a~~lv~ 278 (341)
+|+.++.. .++++..-..+..+.. +...+..++++.|+. . +.|++.++..+++.
T Consensus 143 iL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvh--N~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 143 ILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVH--NGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred HHHHHhhhhcCCCCceeeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999864 4677655555555554 345566677777753 3 47999999888884
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-12 Score=120.64 Aligned_cols=187 Identities=13% Similarity=0.174 Sum_probs=123.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc-----------cChHHHhhcCCEEEE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL-----------NDNHRIIKEAEYVFL 130 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~-----------~s~~e~~~~aDvIil 130 (341)
|.|||+|||+|.||+.++..|.++|. +|+++.|++++++.++++-|+ .. ....+.....|+||+
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~----~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv 76 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGL----PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLL 76 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCC----CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEE
Confidence 56899999999999999999999984 899999988888877653232 11 011122357899999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEEEcC------Cchhh---hcCc
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIRVMP------NTAMK---YGKG 200 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr~mp------n~p~~---v~~g 200 (341)
|||..++.++++.+ ++.+ .++++||++.||+.. +.+++.++ . .+ ++.... ..|.. .+.|
T Consensus 77 ~vK~~~~~~al~~l-~~~l--~~~t~vv~lQNGv~~~e~l~~~~~------~-~~-v~~g~~~~ga~~~~pg~v~~~~~g 145 (305)
T PRK05708 77 ACKAYDAEPAVASL-AHRL--APGAELLLLQNGLGSQDAVAARVP------H-AR-CIFASSTEGAFRDGDWRVVFAGHG 145 (305)
T ss_pred ECCHHhHHHHHHHH-HhhC--CCCCEEEEEeCCCCCHHHHHHhCC------C-Cc-EEEEEeeeceecCCCCEEEEeceE
Confidence 99999999999999 9999 889999999999995 56777776 2 23 332111 11221 1223
Q ss_pred eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchHH-------HHHHHHHHHH
Q psy316 201 ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGCA-------YLFLVMDAMA 260 (341)
Q Consensus 201 ~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gpa-------~~~~~~eal~ 260 (341)
.+. .|.. .. +..+.+.++|+..|....++++ .++.++++.++... .+..++..+.
T Consensus 146 ~~~--~G~~-~~--~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~ 220 (305)
T PRK05708 146 FTW--LGDP-RN--PTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELS 220 (305)
T ss_pred EEE--EcCC-CC--cchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHH
Confidence 322 3322 22 4456678888888876666443 35667777665322 2333333344
Q ss_pred HHHHHcCCC
Q psy316 261 DGAVKQGIP 269 (341)
Q Consensus 261 ea~~~~Gl~ 269 (341)
+.+.+.|++
T Consensus 221 ~va~a~G~~ 229 (305)
T PRK05708 221 ELLRRCGQP 229 (305)
T ss_pred HHHHHcCCC
Confidence 445677775
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-11 Score=119.44 Aligned_cols=158 Identities=14% Similarity=0.175 Sum_probs=110.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCC----CCeEEEEcC-----ChhhhhhcCcC-----C--------Cc-cccChHHHh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCI----PAQIIASAP-----SERFKLHWPEP-----M--------DF-ALNDNHRII 122 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~----~~~V~v~~r-----~~e~~~~l~~~-----~--------g~-~~~s~~e~~ 122 (341)
||+|||+|+||++||..|..+|..+ .++|++|.| +++-.+.+.+. + ++ .+.+.++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999887111 159999998 44443333221 1 13 446778889
Q ss_pred hcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH--H-------HHHhccccCCCCCCCCeEEEEcCCc
Q psy316 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE--T-------LKKKLSVLVPNPNDAPTIIRVMPNT 193 (341)
Q Consensus 123 ~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~--~-------l~~~l~~~~~~~~~~~~vvr~mpn~ 193 (341)
+++|+||++||++.++++++++ ++++ .+++++||++.|+..+ . +++.++ .++.+-..||.
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l-~~~l--~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~--------~~~~~lsGP~~ 149 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQL-KGHV--KPNARAISCIKGLEVSKDGVKLLSDIIEEELG--------IPCGVLSGANL 149 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHH-Hhhc--CCCCEEEEEeCCcccCCCcCccHHHHHHHHhC--------CCeEEeeCcch
Confidence 9999999999999999999999 9998 7888999999998865 2 233333 23134567999
Q ss_pred hhhhcCce-E-EEEeCCCCC--ccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 194 AMKYGKGI-T-GMCHDVHLD--KESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 194 p~~v~~g~-~-~l~~~~~~~--~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
+.++..|. + ....+.+.+ . +....++++|+.=-..++.+.+
T Consensus 150 A~Eva~~~pt~~~ia~~~~~~~~--~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 150 ANEVAKEKFSETTVGYRDPADFD--VDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred HHHHHcCCCceEEEEeCCCcchH--HHHHHHHHHhCCCCEEEEEcCC
Confidence 98887764 2 222222211 3 6677888888754444455544
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.9e-12 Score=126.64 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=114.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc-----------CcCCC-------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW-----------PEPMD-------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l-----------~~~~g-------------~-~~~s~~ 119 (341)
+||+|||+|.||..||..|+++|+ +|++|||+++.+++. .+ .| + .+.+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~----~V~l~d~~~e~l~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~~~~ 80 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGH----QVLLYDIRAEALARAIAGIEARLNSLVT-KGKLTAEECERTLKRLIPVTDLH 80 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhccEEeCCHH
Confidence 579999999999999999999995 999999999887642 22 12 2 345554
Q ss_pred HHhhcCCEEEEeeCh-HHHHH-HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKP-QYLDS-AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~-~~v~~-vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
.+.+||+||.|++. .+++. ++.++ ...+ +++.+|.|.++++++..+.+.+. ...+ ++..+.-.|..+
T Consensus 81 -~l~~aDlVIEav~E~~~vK~~vf~~l-~~~~--~~~~IlasnTStl~i~~iA~~~~------~p~r-~~G~HFf~Papv 149 (503)
T TIGR02279 81 -ALADAGLVIEAIVENLEVKKALFAQL-EELC--PADTIIASNTSSLSITAIAAGLA------RPER-VAGLHFFNPAPV 149 (503)
T ss_pred -HhCCCCEEEEcCcCcHHHHHHHHHHH-HhhC--CCCeEEEECCCCCCHHHHHHhcC------cccc-eEEEeccCcccc
Confidence 46799999999985 45554 55667 7777 78888888889999998888776 3455 666665444444
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcC
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIP 234 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~ 234 (341)
. ....++.++..++ +.++.+.++++.+|+.. ++.
T Consensus 150 ~-~LvEvv~g~~Ts~--e~~~~~~~l~~~lgk~pv~v~ 184 (503)
T TIGR02279 150 M-ALVEVVSGLATAA--EVAEQLYETALAWGKQPVHCH 184 (503)
T ss_pred C-ceEEEeCCCCCCH--HHHHHHHHHHHHcCCeeeEeC
Confidence 3 3566777777777 99999999999999865 454
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=118.00 Aligned_cols=152 Identities=11% Similarity=0.135 Sum_probs=116.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------C---------Cc-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------M---------DF-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~---------g~-~~~s~~e~~~~ 124 (341)
+||+|||+|.||..||..++.+|+ +|++||++++..+.+.+. . .+ .+.+.++++++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~----~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL----DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 589999999999999999999995 999999998765542210 1 12 34567788899
Q ss_pred CCEEEEeeChH-HHH-HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceE
Q psy316 125 AEYVFLAMKPQ-YLD-SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGIT 202 (341)
Q Consensus 125 aDvIilaV~~~-~v~-~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~ 202 (341)
||+|+.|+|.. +++ +++.++ ...+ +++.+|.|.++++++..+.+.+. ...+ ++..+|-.|..... ..
T Consensus 84 aDlViEavpE~l~vK~~lf~~l-~~~~--~~~aIlaSnTS~l~~s~la~~~~------~p~R-~~g~HffnP~~~~p-LV 152 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERI-SRAA--KPDAIIASSTSGLLPTDFYARAT------HPER-CVVGHPFNPVYLLP-LV 152 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHH-HHhC--CCCeEEEECCCccCHHHHHHhcC------Cccc-EEEEecCCccccCc-eE
Confidence 99999999853 444 566778 7777 78888888888999999988877 4567 88888765654433 33
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCe-EEc
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIV-EII 233 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v 233 (341)
-+++++..++ +..+.+..+++.+|+. +.+
T Consensus 153 EVv~g~~T~~--e~~~~~~~f~~~lGk~pV~v 182 (321)
T PRK07066 153 EVLGGERTAP--EAVDAAMGIYRALGMRPLHV 182 (321)
T ss_pred EEeCCCCCCH--HHHHHHHHHHHHcCCEeEec
Confidence 3567777777 9999999999999975 455
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=113.98 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=105.5
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------C-------------Cc-cccChHHH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------M-------------DF-ALNDNHRI 121 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~-------------g~-~~~s~~e~ 121 (341)
||+|||+|.||..||..++.+|+ +|.++|++++.++...+. . .+ ...+.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~----~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY----EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS----EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC----cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH
Confidence 69999999999999999999995 999999999876543221 0 12 34566666
Q ss_pred hhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
. ++|+||-|++. ..-++++.++ ...+ .++.+|.|.+++++++.|...+. ...+ ++.+++-.|.....
T Consensus 77 ~-~adlViEai~E~l~~K~~~~~~l-~~~~--~~~~ilasnTSsl~i~~la~~~~------~p~R-~ig~Hf~~P~~~~~ 145 (180)
T PF02737_consen 77 V-DADLVIEAIPEDLELKQELFAEL-DEIC--PPDTILASNTSSLSISELAAALS------RPER-FIGMHFFNPPHLMP 145 (180)
T ss_dssp C-TESEEEE-S-SSHHHHHHHHHHH-HCCS---TTSEEEE--SSS-HHHHHTTSS------TGGG-EEEEEE-SSTTT--
T ss_pred h-hhheehhhccccHHHHHHHHHHH-HHHh--CCCceEEecCCCCCHHHHHhccC------cCce-EEEEecccccccCc
Confidence 6 99999999984 3455788888 8888 89999999999999999998887 4567 88877655654322
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
..=+.+++..++ +..+.+..+++.+|+...
T Consensus 146 -lVEvv~~~~T~~--~~~~~~~~~~~~~gk~pv 175 (180)
T PF02737_consen 146 -LVEVVPGPKTSP--ETVDRVRALLRSLGKTPV 175 (180)
T ss_dssp -EEEEEE-TTS-H--HHHHHHHHHHHHTT-EEE
T ss_pred -eEEEeCCCCCCH--HHHHHHHHHHHHCCCEEE
Confidence 333566777777 999999999999998643
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-12 Score=123.52 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=120.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-ccChHHH---------------hhcCCE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-LNDNHRI---------------IKEAEY 127 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-~~s~~e~---------------~~~aDv 127 (341)
|||+|||+|.||..+|..|.++|+ +|++||+++++.+.++.. .. . -....+. +++||+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~----~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDv 78 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK----QVIGVDINQHAVDTINRG-EIHIVEPDLDMVVKTAVEGGYLRATTTPEPADA 78 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC----EEEEEeCCHHHHHHHHCC-CCCcCCCCHHHHHHHHhhcCceeeecccccCCE
Confidence 789999999999999999999995 999999999999886531 11 1 1111111 347999
Q ss_pred EEEeeCh----------HHHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcccc-----CC--CCCCCCeEE
Q psy316 128 VFLAMKP----------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLSVL-----VP--NPNDAPTII 187 (341)
Q Consensus 128 IilaV~~----------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~~~-----~~--~~~~~~~vv 187 (341)
||+|||. ..+.++++++ .+++ +++++||.. ++++ .+.+...+... .+ .+.+..+.+
T Consensus 79 vii~vptp~~~~~~~dl~~v~~~~~~i-~~~l--~~g~iVI~~-STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v 154 (415)
T PRK11064 79 FLIAVPTPFKGDHEPDLTYVEAAAKSI-APVL--KKGDLVILE-STSPVGATEQMAEWLAEARPDLTFPQQAGEQADINI 154 (415)
T ss_pred EEEEcCCCCCCCCCcChHHHHHHHHHH-HHhC--CCCCEEEEe-CCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEE
Confidence 9999996 5788888888 8888 888888765 3333 33443322210 00 000011011
Q ss_pred EEcC-----CchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHH
Q psy316 188 RVMP-----NTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMAD 261 (341)
Q Consensus 188 r~mp-----n~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~e 261 (341)
-..| ........-...++.+. ++ +..+.++++++.++.. +.++...-..++.++. +.|.+.-+..+.|
T Consensus 155 ~~~PE~~~~G~~~~~~~~~~~vvgG~--~~--~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~--N~~~a~~ia~~nE 228 (415)
T PRK11064 155 AYCPERVLPGQVMVELIKNDRVIGGM--TP--VCSARASELYKIFLEGECVVTNSRTAEMCKLTE--NSFRDVNIAFANE 228 (415)
T ss_pred EECCCccCCCChhhhhcCCCEEEEeC--CH--HHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 2222 21111111122344442 34 7889999999999864 3445433334444433 3455554444444
Q ss_pred ---HHHHcCCCHHHHHHHHH
Q psy316 262 ---GAVKQGIPRDMALRIGA 278 (341)
Q Consensus 262 ---a~~~~Gl~~~~a~~lv~ 278 (341)
.+.+.|+|..+..+.+.
T Consensus 229 ~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 229 LSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHhCCCHHHHHHHhc
Confidence 45689999988776654
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=116.45 Aligned_cols=169 Identities=11% Similarity=0.141 Sum_probs=112.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--------------cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--------------ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--------------~~~s~~e~~~~aDvIi 129 (341)
.|||+|||+|.||+.+|..|.++|+ +|+++.|++. +.+.+ .|+ ...+..+....+|+||
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~----~V~~~~r~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF----DVHFLLRSDY--EAVRE-NGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeCCH--HHHHh-CCeEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 4789999999999999999999984 9999999763 22322 121 0112233466899999
Q ss_pred EeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEEEc------CCchhh---hcC
Q psy316 130 LAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIRVM------PNTAMK---YGK 199 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr~m------pn~p~~---v~~ 199 (341)
+|||..++.+++..+ .+.+ .++.+|+++.+|+.. +.+.+.++. .+ ++... ...|.. .+.
T Consensus 78 lavK~~~~~~~~~~l-~~~~--~~~~~iv~lqNG~~~~e~l~~~~~~-------~~-v~~g~~~~~a~~~~pg~v~~~~~ 146 (313)
T PRK06249 78 VGLKTTANALLAPLI-PQVA--APDAKVLLLQNGLGVEEQLREILPA-------EH-LLGGLCFICSNRVGPGVIHHLAY 146 (313)
T ss_pred EEecCCChHhHHHHH-hhhc--CCCCEEEEecCCCCcHHHHHHHCCC-------Cc-EEEEeeeEeEecCCCeEEEECCC
Confidence 999999999999998 8888 788899999999985 667777772 33 33321 112221 123
Q ss_pred ceEEEEeCCCCC-c--cHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchHH
Q psy316 200 GITGMCHDVHLD-K--ESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGCA 250 (341)
Q Consensus 200 g~~~l~~~~~~~-~--~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gpa 250 (341)
|.+.+...+... + ..+....+..+|+..|..+.++++ .++.++++.++...
T Consensus 147 g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g 213 (313)
T PRK06249 147 GRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD 213 (313)
T ss_pred CcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence 333333222111 0 015566788899999987666543 45677888876443
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-10 Score=103.56 Aligned_cols=226 Identities=14% Similarity=0.142 Sum_probs=144.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHh---hcCCEEEEeeChH-HHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRII---KEAEYVFLAMKPQ-YLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~---~~aDvIilaV~~~-~v~~ 139 (341)
|+||.||+|+||..|+++|++.|+ ++++||+|++..+.++. .|+ ...++.+.+ ...-+|.++||.. .+.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~gh----dvV~yD~n~~av~~~~~-~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGH----DVVGYDVNQTAVEELKD-EGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCC----eEEEEcCCHHHHHHHHh-cCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 689999999999999999999995 99999999999999988 477 666666665 4678999999986 7889
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHHHHHH--hccccCCCCCCCCeEEEEcCC-chhhhcCceEEEEeCCCCCccHHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLETLKK--KLSVLVPNPNDAPTIIRVMPN-TAMKYGKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~--~l~~~~~~~~~~~~vvr~mpn-~p~~v~~g~~~l~~~~~~~~~~~~ 216 (341)
+++++ .+.| .++.+||+--+..=-+.+++ .+.. ++-. ++.+-.. .+.-...|...+..++ + +.
T Consensus 76 vi~~l-a~~L--~~GDivIDGGNS~y~Ds~rr~~~l~~-----kgi~-flD~GTSGG~~G~~~G~~lMiGG~---~--~a 141 (300)
T COG1023 76 VIDDL-APLL--SAGDIVIDGGNSNYKDSLRRAKLLAE-----KGIH-FLDVGTSGGVWGAERGYCLMIGGD---E--EA 141 (300)
T ss_pred HHHHH-Hhhc--CCCCEEEECCccchHHHHHHHHHHHh-----cCCe-EEeccCCCCchhhhcCceEEecCc---H--HH
Confidence 99999 9999 89999997544332344433 2221 3334 4444322 1222346778888775 3 88
Q ss_pred HHHHHHHHHhcCC-e-E--EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHH-HHHHHHH
Q psy316 217 LNMAIKIMEQGGI-V-E--IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAV-----KQGIPRDMALRIGAQ-LLKGSGQ 286 (341)
Q Consensus 217 ~~~v~~ll~~lG~-~-~--~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~-----~~Gl~~~~a~~lv~~-~~~gs~~ 286 (341)
++.++++|+.+.. . - ++++..-..+..+.-+| .=|.+|++++|... ...+|.++.-++-.+ ++.+| .
T Consensus 142 ~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNG--IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrS-W 218 (300)
T COG1023 142 VERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNG--IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRS-W 218 (300)
T ss_pred HHHHHHHHHhhCcCcCccccccCCCcchhHHHHhcc--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHH-H
Confidence 9999999998764 2 1 23443323333333322 23456777777532 234555554444433 23333 2
Q ss_pred HHHhhhhhccccCCCChHHHHHhcCCCc
Q psy316 287 LVHKDLLRMDHAAQAHPAVIKDQICSPG 314 (341)
Q Consensus 287 l~~~~~~~~~~~~~~~p~~l~~~v~tpg 314 (341)
++.- .++..+ .+-+.+++...|.+.|
T Consensus 219 LldL-t~~Af~-~d~~L~q~~g~v~dSG 244 (300)
T COG1023 219 LLDL-TAEAFK-KDPDLDQISGRVSDSG 244 (300)
T ss_pred HHHH-HHHHHh-hCCCHHHhcCeeccCC
Confidence 2210 000001 3336777777777765
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.3e-11 Score=111.67 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=113.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-----------cCcCCC-------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-----------WPEPMD-------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-----------l~~~~g-------------~-~~~s~~ 119 (341)
.||+|||+|.||..||..++.+|+ +|++||++++.+++ +.++ | + .+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~l~~~~~~- 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV----DVLVFETTEELATAGRNRIEKSLERAVSR-GKLTERERDAALARLRFTTDL- 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHHHHHHHHHHHHhc-ccCChhhHHHHHhCeEeeCCH-
Confidence 489999999999999999999995 99999999998776 3321 2 1 23444
Q ss_pred HHhhcCCEEEEeeChH-HHHH-HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ-YLDS-AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~-~v~~-vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+.+++||+||.|++.+ .++. ++..+ ...+ .+++.+++|.++++++..+...+. ...+ ++..++-.|...
T Consensus 80 ~~~~~~d~ViEav~E~~~~K~~l~~~l-~~~~-~~~~~il~snTS~~~~~~la~~~~------~~~r-~~g~hf~~P~~~ 150 (286)
T PRK07819 80 GDFADRQLVIEAVVEDEAVKTEIFAEL-DKVV-TDPDAVLASNTSSIPIMKLAAATK------RPGR-VLGLHFFNPVPV 150 (286)
T ss_pred HHhCCCCEEEEecccCHHHHHHHHHHH-HHhh-CCCCcEEEECCCCCCHHHHHhhcC------CCcc-EEEEecCCCccc
Confidence 5689999999999853 4554 44555 5543 036889999999999999988776 3466 777777666555
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHH-hcCCeE-EcCC
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIME-QGGIVE-IIPE 235 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~-~lG~~~-~v~e 235 (341)
...+ -+..+...++ +..+.+.+++. .+|+.. .+.+
T Consensus 151 ~~lv-Elv~~~~T~~--~~~~~~~~~~~~~lgk~pv~v~d 187 (286)
T PRK07819 151 LPLV-ELVPTLVTSE--ATVARAEEFASDVLGKQVVRAQD 187 (286)
T ss_pred CceE-EEeCCCCCCH--HHHHHHHHHHHHhCCCCceEecC
Confidence 5444 3455666777 99999999988 599864 4543
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=110.86 Aligned_cols=166 Identities=17% Similarity=0.260 Sum_probs=116.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c------------ccChHHHhhcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A------------LNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~------------~~s~~e~~~~aDvIila 131 (341)
|||.|+|+|.||+.++..|.++| ++|+++.|++. ++++++. |+ . .....+....+|+||++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g----~~V~~~~R~~~-~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG----HDVTLLVRSRR-LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC----CeEEEEecHHH-HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEE
Confidence 68999999999999999999998 49999999765 7777763 43 1 11223455689999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEE-E--------cCCchhhhcCce
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIR-V--------MPNTAMKYGKGI 201 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr-~--------mpn~p~~v~~g~ 201 (341)
||..++.++++.+ .+.+ ++++.|+.+.+|+.. +.+.+.++. . . ++. + -|..-...+.|.
T Consensus 75 vKa~q~~~al~~l-~~~~--~~~t~vl~lqNG~g~~e~l~~~~~~------~-~-il~G~~~~~a~~~~~g~v~~~g~g~ 143 (307)
T COG1893 75 VKAYQLEEALPSL-APLL--GPNTVVLFLQNGLGHEEELRKILPK------E-T-VLGGVTTHGAVREGPGHVVHTGLGD 143 (307)
T ss_pred eccccHHHHHHHh-hhcC--CCCcEEEEEeCCCcHHHHHHHhCCc------c-e-EEEEEeeeeeEecCCceEEEecCCc
Confidence 9999999999999 9999 889999999999995 556776662 2 2 221 1 122222223344
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchH
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGC 249 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gp 249 (341)
+.+..-....+ +..+.+.++|+..|....+.++ .++.++++..|-.
T Consensus 144 ~~ig~~~~~~~--~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~ 202 (307)
T COG1893 144 TVIGELRGGRD--ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNN 202 (307)
T ss_pred EEEccCCCCch--HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCc
Confidence 33332222223 6778888889999988776543 3556666666533
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-10 Score=107.77 Aligned_cols=205 Identities=14% Similarity=0.181 Sum_probs=130.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
-.++|||||+|+||.++|++|...|+ +|++++|.....+.... .|+...+..++++.||+|++++|...-..++.
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~----~ViV~~r~~~s~~~A~~-~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~ 89 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGV----EVVVGVRPGKSFEVAKA-DGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYK 89 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcC----EEEEEECcchhhHHHHH-cCCEECCHHHHHhcCCEEEEeCCChHHHHHHH
Confidence 35899999999999999999999995 99999876444333333 46633488999999999999999755577774
Q ss_pred -HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh-------cCceEEEEeCC-CCCcc
Q psy316 143 -GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY-------GKGITGMCHDV-HLDKE 213 (341)
Q Consensus 143 -~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v-------~~g~~~l~~~~-~~~~~ 213 (341)
++ .+.+ +++.+++ .+-|..+-. ....|. .+.. |+-+-|-.|... |.|+..++.-. +.+-
T Consensus 90 ~ei-l~~M--K~GaiL~-f~hgfni~~-~~i~pp-----~~vd-v~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg- 157 (335)
T PRK13403 90 AEV-EENL--REGQMLL-FSHGFNIHF-GQINPP-----SYVD-VAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATG- 157 (335)
T ss_pred HHH-HhcC--CCCCEEE-ECCCcceec-CceeCC-----CCCe-EEEECCCCCChHHHHHHHcCCCceeEEEEEECCCC-
Confidence 56 7778 7887665 445665421 111221 4556 777777766533 66765554332 2344
Q ss_pred HHHHHHHHHHHHhcCCe--EEc--C---C---CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV--EII--P---E---SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKG 283 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~--~~v--~---e---~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~g 283 (341)
...+.+......+|.. -.+ + | +++..=..|+|... .++.+--+..++.|.+++.|+.=..+=+.=
T Consensus 158 -~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~----~li~~gfe~lveaGy~pe~Ayfe~~he~kl 232 (335)
T PRK13403 158 -TALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVT----ALVKAGFETLTEGGYRPEIAYFECLHELKL 232 (335)
T ss_pred -cHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5677778888888853 222 1 2 23333344444333 344444555678999999876543333344
Q ss_pred HHHHHH
Q psy316 284 SGQLVH 289 (341)
Q Consensus 284 s~~l~~ 289 (341)
...++.
T Consensus 233 i~dli~ 238 (335)
T PRK13403 233 IVDLMY 238 (335)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=115.50 Aligned_cols=197 Identities=13% Similarity=0.098 Sum_probs=115.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--------------Cc-cccChHHHhhcCCEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--------------DF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--------------g~-~~~s~~e~~~~aDvIi 129 (341)
|||+|||+|.||..+|..|.+ |+ +|++||+++++.+.+++.. |. .+++..+.+++||++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~----~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvi 81 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SR----QVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYI 81 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CC----EEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEE
Confidence 689999999999999999766 54 9999999999999887311 12 2344456789999999
Q ss_pred EeeC-h---------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH---H-HHHHhccccCCCC-CCCCeEEEEcCC--
Q psy316 130 LAMK-P---------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---E-TLKKKLSVLVPNP-NDAPTIIRVMPN-- 192 (341)
Q Consensus 130 laV~-~---------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~-~l~~~l~~~~~~~-~~~~~vvr~mpn-- 192 (341)
+||| | ..+....+++ .+++ +++++||.. +++++ + .++..+...-+.. .... .+..-|.
T Consensus 82 i~Vptp~~~~~~~dl~~v~~a~~~i-~~~l--~~g~lVI~~-STv~pgtt~~~~~~~l~~~~g~~~~~~~-~~~~~PE~v 156 (425)
T PRK15182 82 ITVPTPINTYKQPDLTPLIKASETV-GTVL--NRGDIVVYE-STVYPGCTEEECVPILARMSGMTFNQDF-YVGYSPERI 156 (425)
T ss_pred EEcCCCCCCCCCcchHHHHHHHHHH-HHhc--CCCCEEEEe-cCCCCcchHHHHHHHHHhccCCCcCCCe-eEeeCCCcC
Confidence 9998 3 2455555677 7788 788888865 33443 2 2222222100000 0112 2332221
Q ss_pred ---chhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcC--CeEEcCCCchhHHHHHhcchHHHHHHHHHHH---HHHHH
Q psy316 193 ---TAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGG--IVEIIPESMMNSFGAIAGSGCAYLFLVMDAM---ADGAV 264 (341)
Q Consensus 193 ---~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG--~~~~v~e~~~d~~~al~g~gpa~~~~~~eal---~ea~~ 264 (341)
.....-....-+..|. ++ +..+.+..+++.+. ..+.++...-...+.++. +.|.+.-+..+ ...+.
T Consensus 157 ~~G~a~~~~~~~~riv~G~--~~--~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~--N~~~av~Ia~~NE~a~lae 230 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGS--TA--QIAELIDEVYQQIISAGTYKAESIKVAEAAKVIE--NTQRDLNIALVNELAIIFN 230 (425)
T ss_pred CCCcccccccCCCeEEECC--CH--HHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 1111111112234443 24 66778888998875 234444333333444433 34544443333 44467
Q ss_pred HcCCCHHHHHHHH
Q psy316 265 KQGIPRDMALRIG 277 (341)
Q Consensus 265 ~~Gl~~~~a~~lv 277 (341)
+.|+|..+..+.+
T Consensus 231 ~~GiD~~~v~~a~ 243 (425)
T PRK15182 231 RLNIDTEAVLRAA 243 (425)
T ss_pred HhCcCHHHHHHHh
Confidence 9999999887764
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-10 Score=109.84 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=114.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------------Cc---cccChHHHhhcCC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------------DF---ALNDNHRIIKEAE 126 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------------g~---~~~s~~e~~~~aD 126 (341)
|||+|||+|.||..+|..|. .|+ +|+++|+++++.+.+.+.. +. ...+..+++.++|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~----~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNH----EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDAD 75 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCC----cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCC
Confidence 58999999999999996655 574 9999999999998876510 12 2334567788999
Q ss_pred EEEEeeCh-----------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCC
Q psy316 127 YVFLAMKP-----------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPN 192 (341)
Q Consensus 127 vIilaV~~-----------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn 192 (341)
+||+|||. ..++++++++ .. + +++++||.. +.+++ +.+.+.+.. .. +...|
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i-~~-~--~~g~lVV~~-STv~pgtt~~l~~~~~~-------~~--v~~~P- 140 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDV-VE-I--NPYAVMVIK-STVPVGFTAAMHKKYRT-------EN--IIFSP- 140 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHH-Hh-c--CCCCEEEEe-eecCCchHHHHHHHhhc-------Cc--EEECc-
Confidence 99999983 4678888888 66 6 678887754 34443 444444331 11 22222
Q ss_pred chhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHh--cCCeE--EcCCCchhHHHHHhcchHHHHHHHH---
Q psy316 193 TAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQ--GGIVE--IIPESMMNSFGAIAGSGCAYLFLVM--- 256 (341)
Q Consensus 193 ~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~--lG~~~--~v~e~~~d~~~al~g~gpa~~~~~~--- 256 (341)
.....|. .++.++. + +..+.+.+++.. ++..+ +++...-..++.+.. ++|.+.-+
T Consensus 141 --E~l~~G~a~~d~~~p~rvv~G~~---~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~--N~~~a~~Ia~~ 211 (388)
T PRK15057 141 --EFLREGKALYDNLHPSRIVIGER---S--ERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFA--NTYLAMRVAYF 211 (388)
T ss_pred --ccccCCcccccccCCCEEEEEcC---c--HHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHH--HHHHHHHHHHH
Confidence 2222232 3444443 3 566777777744 45432 344333333444433 34444433
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q psy316 257 DAMADGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 257 eal~ea~~~~Gl~~~~a~~lv~ 278 (341)
..+...+.+.|+|..+..+.+.
T Consensus 212 NE~a~lae~~GiD~~eV~~a~~ 233 (388)
T PRK15057 212 NELDSYAESLGLNTRQIIEGVC 233 (388)
T ss_pred HHHHHHHHHhCcCHHHHHHHhc
Confidence 3334446789999998877653
|
|
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=108.53 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=120.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh-cCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK-EAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~-~aDvIilaV~~~~v~~vl~ 142 (341)
.+|||||.|+||+-+|..|.++|+ .+++++|+. ...+++++|. ..+.+.++.. .+|+|++||....++.++.
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh----~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekila 126 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGH----GLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILA 126 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCc----eeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHH
Confidence 589999999999999999999995 999999975 4555566887 6677777654 7999999999999999998
Q ss_pred Hhhhcc-cccCCCcEEEEecCCCC--HHHHHHhccccCCCCCCCCeEEEEcCCc-hhhh---cCceEEEEeCCCCC---c
Q psy316 143 GLVNDK-VTLNSSRCIISMLVGVD--LETLKKKLSVLVPNPNDAPTIIRVMPNT-AMKY---GKGITGMCHDVHLD---K 212 (341)
Q Consensus 143 ~i~~~~-l~~~~~~iIVs~~agi~--~~~l~~~l~~~~~~~~~~~~vvr~mpn~-p~~v---~~g~~~l~~~~~~~---~ 212 (341)
.. -+. + +.+++++...+--. .+.+++++| ++.. |+.++|.. |..+ .+|...++-..... .
T Consensus 127 ty-pfqrl--rrgtlfvdvlSvKefek~lfekYLP------kdfD-IlctHpmfGPksvnh~wqglpfVydkvRig~~~~ 196 (480)
T KOG2380|consen 127 TY-PFQRL--RRGTLFVDVLSVKEFEKELFEKYLP------KDFD-ILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAAS 196 (480)
T ss_pred hc-Cchhh--ccceeEeeeeecchhHHHHHHHhCc------cccc-eEeecCCcCCCcCCCccccCceEEEEeecccccc
Confidence 77 554 6 77888887644222 456788899 6788 88888864 3323 23444444221111 0
Q ss_pred cHHHHHHHHHHHHhcCCe-EEcCCCchhHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIV-EIIPESMMNSFGA 243 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~a 243 (341)
..+.++.+.++|...|.. ++++-+.+|.++|
T Consensus 197 r~ercE~fleIf~cegckmVemS~eeHDkiaA 228 (480)
T KOG2380|consen 197 RPERCEFFLEIFACEGCKMVEMSYEEHDKIAA 228 (480)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEeeccccccc
Confidence 128899999999999975 5677666776655
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-10 Score=116.17 Aligned_cols=152 Identities=12% Similarity=0.097 Sum_probs=116.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDNH 119 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~~ 119 (341)
..||+|||+|.||..||..++.+|+ +|+++|++++.+++..+. .| + .+.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 387 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGV----PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY- 387 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-
Confidence 3589999999999999999999995 999999998876532110 01 1 23343
Q ss_pred HHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+.+++||+||-|++. ..-++++.++ .+++ +++.+|.|.++++++..|.+.+. ...+ ++..+.-.|...
T Consensus 388 ~~~~~aDlViEav~E~l~~K~~vf~~l-~~~~--~~~~ilasNTSsl~i~~la~~~~------~p~r-~~g~Hff~P~~~ 457 (715)
T PRK11730 388 AGFERVDVVVEAVVENPKVKAAVLAEV-EQKV--REDTILASNTSTISISLLAKALK------RPEN-FCGMHFFNPVHR 457 (715)
T ss_pred HHhcCCCEEEecccCcHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------CCcc-EEEEecCCcccc
Confidence 557899999999985 3455788888 8888 88999999999999999998887 4567 888887666554
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-Ec
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-II 233 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v 233 (341)
..- .=+..++..++ +..+.+..++..+|+.. .+
T Consensus 458 ~~l-VEvv~g~~T~~--~~~~~~~~~~~~lgk~pv~v 491 (715)
T PRK11730 458 MPL-VEVIRGEKTSD--ETIATVVAYASKMGKTPIVV 491 (715)
T ss_pred cce-EEeeCCCCCCH--HHHHHHHHHHHHhCCceEEe
Confidence 332 33456667777 89999999999999864 44
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=97.60 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=120.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||+|||. |.||+.+++.|.++|+ .|+ +.+||+||+|+|...+.+++++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~----~v~--------------------------~~~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL----GVY--------------------------IKKADHAFLSVPIDAALNYIES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC----EEE--------------------------ECCCCEEEEeCCHHHHHHHHHH
Confidence 58999988 9999999999999995 664 2468999999999999999887
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCch-hhhcC---ceEEEEeCCCCCccHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTA-MKYGK---GITGMCHDVHLDKESEHLNM 219 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p-~~v~~---g~~~l~~~~~~~~~~~~~~~ 219 (341)
+ . ++|+++ ++++.. +.+.. .+ ++..+|..- ..... +..+++ .+..++ +..+.
T Consensus 51 ~-------~--~~v~Dv-~SvK~~-i~~~~---------~~-~vg~HPMfGp~~a~~~lf~~~iv~-~~~~~~--~~~~~ 106 (197)
T PRK06444 51 Y-------D--NNFVEI-SSVKWP-FKKYS---------GK-IVSIHPLFGPMSYNDGVHRTVIFI-NDISRD--NYLNE 106 (197)
T ss_pred h-------C--CeEEec-cccCHH-HHHhc---------CC-EEecCCCCCCCcCcccccceEEEE-CCCCCH--HHHHH
Confidence 7 2 255654 666654 33321 24 677766422 11111 223333 344444 66788
Q ss_pred HHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy316 220 AIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHA 298 (341)
Q Consensus 220 v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~ 298 (341)
++++|+ |.. ++++.+.||..+|..++.|+.++. ++.+ .+ ..+...+++...++.+. .
T Consensus 107 ~~~l~~--G~~~~~~t~eeHD~~~A~ishLpH~ia~---al~~----~~------~~~~t~~fr~l~ria~~-----~-- 164 (197)
T PRK06444 107 INEMFR--GYHFVEMTADEHDLLMSEIMVKPYIISM---ILKD----IK------SDIKTGSFDKLLEVSEI-----K-- 164 (197)
T ss_pred HHHHHc--CCEEEEeCHHHHHHHHHHHHHHHHHHHH---HHcc----CC------CCCCCccHHHHHHHHHH-----h--
Confidence 999998 654 456999999999999888876543 2222 11 23444555555555432 0
Q ss_pred CCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 299 AQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 299 ~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
.+.+|+.|.+....+.-. +.++.|.+
T Consensus 165 ~~~~p~lw~dI~~~N~~a--~~~~~~~~ 190 (197)
T PRK06444 165 EKENWEVFNDTIIYNPYT--NVINDLIE 190 (197)
T ss_pred ccCCHHHHHHHHHHCchH--HHHHHHHH
Confidence 135899999988887554 55555544
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=102.71 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=114.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDN 118 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~ 118 (341)
+.+||++||+|.||+.||..+...|+ +|+++|++++.+++..+. .| + ...+
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~----~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~- 76 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGY----DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD- 76 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCC----ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc-
Confidence 45799999999999999999999774 999999997665432210 01 1 1222
Q ss_pred HHHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh
Q psy316 119 HRIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK 196 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~ 196 (341)
...+++||+||-+++- ..-++++.++ ..+. +++.++-|.++++++..+.+.+. ...+ ++..|+-.|..
T Consensus 77 ~~~l~~~DlVIEAv~E~levK~~vf~~l-~~~~--~~~aIlASNTSsl~it~ia~~~~------rper-~iG~HFfNP~~ 146 (307)
T COG1250 77 LAALKDADLVIEAVVEDLELKKQVFAEL-EALA--KPDAILASNTSSLSITELAEALK------RPER-FIGLHFFNPVP 146 (307)
T ss_pred hhHhccCCEEEEeccccHHHHHHHHHHH-Hhhc--CCCcEEeeccCCCCHHHHHHHhC------Cchh-EEEEeccCCCC
Confidence 2268899999999984 3445688888 7777 88999999999999999998886 4567 88888765655
Q ss_pred hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 197 YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 197 v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
...- .=+..+...++ +..+.+.++...+|+...
T Consensus 147 ~m~L-VEvI~g~~T~~--e~~~~~~~~~~~igK~~v 179 (307)
T COG1250 147 LMPL-VEVIRGEKTSD--ETVERVVEFAKKIGKTPV 179 (307)
T ss_pred ccee-EEEecCCCCCH--HHHHHHHHHHHHcCCCCE
Confidence 4432 23456666677 899999999999998643
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-09 Score=114.01 Aligned_cols=152 Identities=12% Similarity=0.177 Sum_probs=115.9
Q ss_pred CeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhhhhhcCc-----------C--C----------Cc-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERFKLHWPE-----------P--M----------DF-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~~~~l~~-----------~--~----------g~-~~~s~~ 119 (341)
+||+|||+|.||..||..+. .+|+ +|+++|++++.+++..+ + + .+ .+++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~- 379 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI----PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY- 379 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-
Confidence 58999999999999999887 5885 99999999876543211 0 0 12 23333
Q ss_pred HHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+.+++||+||-|++.+ .-.+++.++ ..++ ++++++.|.++++++..|.+.+. ...+ ++.+++-.|...
T Consensus 380 ~~~~~adlViEav~E~l~~K~~v~~~l-~~~~--~~~~ilasnTS~l~i~~la~~~~------~p~r-~~g~HffnP~~~ 449 (699)
T TIGR02440 380 RGFKDVDIVIEAVFEDLALKHQMVKDI-EQEC--AAHTIFASNTSSLPIGQIAAAAS------RPEN-VIGLHYFSPVEK 449 (699)
T ss_pred HHhccCCEEEEeccccHHHHHHHHHHH-HhhC--CCCcEEEeCCCCCCHHHHHHhcC------Cccc-EEEEecCCcccc
Confidence 5688999999999853 445788888 8888 88999999999999999998877 4567 888887666554
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcC
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIP 234 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~ 234 (341)
.. ..=++.++..++ +..+.+..+++.+|+.. .+.
T Consensus 450 ~~-lVEvv~g~~T~~--~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 450 MP-LVEVIPHAGTSE--QTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred Cc-eEEEeCCCCCCH--HHHHHHHHHHHHcCCeEEEEc
Confidence 33 233556677777 89999999999999964 453
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=113.90 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=116.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~~e 120 (341)
+||+|||+|.||..||..++.+|+ +|+++|++++.+++..+. .| + .+.+. +
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~----~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT----PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-A 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-H
Confidence 589999999999999999999995 999999998876542210 01 1 22333 4
Q ss_pred HhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 121 IIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 121 ~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
.+++||+||-||+. ..-++++.++ ...+ +++.++.|.++++++..|...+. ...+ ++..|+-.|....
T Consensus 389 ~~~~aDlViEav~E~l~~K~~vf~~l-~~~~--~~~~ilasnTS~l~i~~ia~~~~------~p~r-~ig~Hff~P~~~~ 458 (714)
T TIGR02437 389 GFDNVDIVVEAVVENPKVKAAVLAEV-EQHV--REDAILASNTSTISISLLAKALK------RPEN-FCGMHFFNPVHRM 458 (714)
T ss_pred HhcCCCEEEEcCcccHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHhhcC------Cccc-EEEEecCCCcccC
Confidence 57899999999985 3455788898 8888 89999999999999999998877 4567 8888876666544
Q ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 199 KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 199 ~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
.- .=++.++..++ +..+.+..++..+|+...
T Consensus 459 ~l-vEvv~g~~Ts~--~~~~~~~~~~~~lgk~pv 489 (714)
T TIGR02437 459 PL-VEVIRGEKSSD--ETIATVVAYASKMGKTPI 489 (714)
T ss_pred ce-EeecCCCCCCH--HHHHHHHHHHHHcCCEEE
Confidence 32 33456667777 899999999999999644
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-09 Score=112.98 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=116.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~~e 120 (341)
.||+|||+|.||..||..++.+|+ +|+++|++++.+++..+. .| + .+.+. +
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~----~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL----KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-S 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC----cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-H
Confidence 579999999999999999999995 999999999876642210 01 1 22333 4
Q ss_pred HhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 121 IIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 121 ~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
.+++||+||-||+.+ .-++++.++ .+++ +++.++.|.++++++..|.+.+. ...+ ++..++-.|....
T Consensus 411 ~~~~aDlViEAv~E~l~~K~~vf~~l-~~~~--~~~~ilasNTSsl~i~~la~~~~------~p~r-~ig~Hff~P~~~m 480 (737)
T TIGR02441 411 GFKNADMVIEAVFEDLSLKHKVIKEV-EAVV--PPHCIIASNTSALPIKDIAAVSS------RPEK-VIGMHYFSPVDKM 480 (737)
T ss_pred HhccCCeehhhccccHHHHHHHHHHH-HhhC--CCCcEEEEcCCCCCHHHHHhhcC------Cccc-eEEEeccCCcccC
Confidence 678999999999853 445788888 8888 89999999999999999999887 4567 8888876666544
Q ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 199 KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 199 ~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
.- .-++.++..++ +..+.+..++..+|+...
T Consensus 481 ~L-vEvv~g~~Ts~--~~~~~~~~~~~~lgk~pv 511 (737)
T TIGR02441 481 QL-LEIITHDGTSK--DTLASAVAVGLKQGKVVI 511 (737)
T ss_pred ce-EEEeCCCCCCH--HHHHHHHHHHHHCCCeEE
Confidence 32 33456667777 899999999999999644
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.5e-09 Score=99.83 Aligned_cols=249 Identities=16% Similarity=0.164 Sum_probs=150.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC----c-cccChHHH---hhcCCEEEEeeCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD----F-ALNDNHRI---IKEAEYVFLAMKP 134 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g----~-~~~s~~e~---~~~aDvIilaV~~ 134 (341)
|+..||+||+|.||+.++.++.++|+ +|.+|||++++.+.+.++.+ + .+.+.+|. ++..--|+|+|+.
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~----~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkA 77 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGY----TVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKA 77 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCc----eEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEec
Confidence 46789999999999999999999995 99999999999887655432 3 44566654 5689999999997
Q ss_pred -HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHh--ccccCCCCCCCCeEEEEcCCchhh--hcCceEEEEeCCC
Q psy316 135 -QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKK--LSVLVPNPNDAPTIIRVMPNTAMK--YGKGITGMCHDVH 209 (341)
Q Consensus 135 -~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~--l~~~~~~~~~~~~vvr~mpn~p~~--v~~g~~~l~~~~~ 209 (341)
..+..+++++ .|+| .++.+||+--+..=.+++++. +.. .+-. ++.+.-. -.+ ...|.+++..|.
T Consensus 78 G~~VD~~I~~L-~p~L--e~gDIiIDGGNs~y~DT~RR~~eL~~-----~Gi~-FvG~GVS-GGEeGA~~GPSiMpGG~- 146 (473)
T COG0362 78 GTPVDAVIEQL-LPLL--EKGDIIIDGGNSHYKDTIRRNKELSE-----KGIL-FVGMGVS-GGEEGARHGPSIMPGGQ- 146 (473)
T ss_pred CCcHHHHHHHH-Hhhc--CCCCEEEeCCCcCCchHHHHHHHHHh-----cCCe-EEecccc-ccccccccCCCcCCCCC-
Confidence 5688999999 9999 899999986554434554432 221 2222 2221100 011 123455554443
Q ss_pred CCccHHHHHHHHHHHHhcC-----C--eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHH----HHHcCCCHHHHHHHHH
Q psy316 210 LDKESEHLNMAIKIMEQGG-----I--VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADG----AVKQGIPRDMALRIGA 278 (341)
Q Consensus 210 ~~~~~~~~~~v~~ll~~lG-----~--~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea----~~~~Gl~~~~a~~lv~ 278 (341)
+ +..+.|.++|+++. . +.|++++.-..+..+..+|--|- -|+-+.|+ -..+|++.++.-++..
T Consensus 147 --~--eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYg--DMQlIaE~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 147 --K--EAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYG--DMQLIAEAYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred --H--HHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHH--HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4 88999999999874 2 34776654333334333333332 22333332 1247888776666554
Q ss_pred HH---------HHHHHHHHHhhhhhccccCCCCh--HHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHH
Q psy316 279 QL---------LKGSGQLVHKDLLRMDHAAQAHP--AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAA 337 (341)
Q Consensus 279 ~~---------~~gs~~l~~~~~~~~~~~~~~~p--~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~ 337 (341)
+. +.-++..+ |..|..+..| +.+.|..-.+|.=--..+.+|+-+---..+.+|+
T Consensus 221 ~WN~geL~SYLIeIT~~IL-----~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaV 285 (473)
T COG0362 221 EWNKGELDSYLIEITADIL-----RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAV 285 (473)
T ss_pred HhccCcchHHHHHHHHHHH-----hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHH
Confidence 42 22333333 3333333322 3444544445433445567776665556666655
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.2e-09 Score=110.82 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=117.0
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDN 118 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~ 118 (341)
.+||+|||+|.||..||..++ .+|+ +|+++|++++.+++..+. .| + .+++.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~----~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 384 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL----PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY 384 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh
Confidence 368999999999999999998 7785 999999998765542110 01 2 23333
Q ss_pred HHHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh
Q psy316 119 HRIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK 196 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~ 196 (341)
+.+++||+||-|++. ..-++++.++ ..++ ++++++.|.++++++..|.+.+. ...+ ++.+++-.|..
T Consensus 385 -~~~~~aDlViEav~E~~~~K~~v~~~l-e~~~--~~~~ilasnTS~l~i~~la~~~~------~p~r-~ig~Hff~P~~ 453 (708)
T PRK11154 385 -RGFKHADVVIEAVFEDLALKQQMVAEV-EQNC--APHTIFASNTSSLPIGQIAAAAA------RPEQ-VIGLHYFSPVE 453 (708)
T ss_pred -HHhccCCEEeecccccHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHHhcC------cccc-eEEEecCCccc
Confidence 567899999999985 3455788888 8888 89999999999999999998877 4567 88888766665
Q ss_pred hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEc
Q psy316 197 YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EII 233 (341)
Q Consensus 197 v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v 233 (341)
... ..=+..++..++ +..+.+..++..+|+. +.+
T Consensus 454 ~~~-lVEvv~g~~Ts~--~~~~~~~~~~~~~gk~pv~v 488 (708)
T PRK11154 454 KMP-LVEVIPHAKTSA--ETIATTVALAKKQGKTPIVV 488 (708)
T ss_pred cCc-eEEEECCCCCCH--HHHHHHHHHHHHcCCceEEE
Confidence 443 233556777777 9999999999999985 445
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-10 Score=95.68 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=79.7
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--------------ccChHHHhhcCCEEEEe
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--------------LNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--------------~~s~~e~~~~aDvIila 131 (341)
|+|+|+|.||..+|..|.++|+ +|+++.|++ +++.++++ |+ . ..+..+....+|+||+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~----~V~l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH----DVTLVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC----EEEEEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHHCCC----ceEEEEccc-cHHhhhhe-eEEEEecccceecccccccCcchhccCCCcEEEEE
Confidence 7899999999999999999884 999999987 77766542 33 1 11112356789999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhcc
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLS 174 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~ 174 (341)
||..++.++++.+ ++++ .+++.|+++.+|+. .+.+++.++
T Consensus 75 vKa~~~~~~l~~l-~~~~--~~~t~iv~~qNG~g~~~~l~~~~~ 115 (151)
T PF02558_consen 75 VKAYQLEQALQSL-KPYL--DPNTTIVSLQNGMGNEEVLAEYFP 115 (151)
T ss_dssp SSGGGHHHHHHHH-CTGE--ETTEEEEEESSSSSHHHHHHCHST
T ss_pred ecccchHHHHHHH-hhcc--CCCcEEEEEeCCCCcHHHHHHHcC
Confidence 9999999999999 9999 78889999999999 466777776
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-10 Score=94.33 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl- 141 (341)
.++|+|||+|..|.+.|.+|.++|+ +|++..|... ..++.++ .|+...+..|+++.+|+|++.+|+....+++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~----~V~Vglr~~s~s~~~A~~-~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~ 78 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGV----NVIVGLREGSASWEKAKA-DGFEVMSVAEAVKKADVVMLLLPDEVQPEVYE 78 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-----EEEEEE-TTCHHHHHHHH-TT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCC----CEEEEecCCCcCHHHHHH-CCCeeccHHHHHhhCCEEEEeCChHHHHHHHH
Confidence 4789999999999999999999996 9998888665 5555555 4885567899999999999999999999998
Q ss_pred HHhhhcccccCCCcEEEEecCCCCH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+++ .|.| +++++++ .+-|..+
T Consensus 79 ~~I-~p~l--~~G~~L~-fahGfni 99 (165)
T PF07991_consen 79 EEI-APNL--KPGATLV-FAHGFNI 99 (165)
T ss_dssp HHH-HHHS---TT-EEE-ESSSHHH
T ss_pred HHH-HhhC--CCCCEEE-eCCcchh
Confidence 678 9999 8998776 4455443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-08 Score=98.50 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=138.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC------hhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS------ERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~------~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.-.++|+|||+|.+|.+.|.+|...|+ +|.+--|. .+..+.+.+ -|+...+..++++.||+|++.+|+.
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGv----nVvvglr~~~id~~~~s~~kA~~-dGF~v~~~~Ea~~~ADvVviLlPDt 108 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGL----DISYALRKEAIAEKRASWRKATE-NGFKVGTYEELIPQADLVINLTPDK 108 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccc----eeEEeccccccccccchHHHHHh-cCCccCCHHHHHHhCCEEEEcCChH
Confidence 446899999999999999999999995 77754443 233444444 2664467899999999999999998
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh-------cCceEEEEeCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY-------GKGITGMCHDV 208 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v-------~~g~~~l~~~~ 208 (341)
.-..+.+++ .+.+ +++.++. .+-|..+-.-.-..+ .+.. |+-+-|-.|... |.|+..+....
T Consensus 109 ~q~~v~~~i-~p~L--K~Ga~L~-fsHGFni~~~~i~~~------~dvd-VimvAPKgpG~~vR~~y~~G~Gvp~l~AV~ 177 (487)
T PRK05225 109 QHSDVVRAV-QPLM--KQGAALG-YSHGFNIVEVGEQIR------KDIT-VVMVAPKCPGTEVREEYKRGFGVPTLIAVH 177 (487)
T ss_pred HHHHHHHHH-HhhC--CCCCEEE-ecCCceeeeCceeCC------CCCc-EEEECCCCCCchHHHHHhcCCCceEEEEEe
Confidence 766677888 8999 8887655 445655432111122 4566 777777666532 56765444332
Q ss_pred ---CCCccHHHHHHHHHHHHhcCCe--EEc-C----C---CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q psy316 209 ---HLDKESEHLNMAIKIMEQGGIV--EII-P----E---SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALR 275 (341)
Q Consensus 209 ---~~~~~~~~~~~v~~ll~~lG~~--~~v-~----e---~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~ 275 (341)
+.+. ...+.+......+|.. -.+ + | +++..=+.|+|. +....++.-+..++.|.+++.|.+
T Consensus 178 ~~qD~~g--~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~----~~~~~~~~Fe~lve~G~~pe~A~k 251 (487)
T PRK05225 178 PENDPKG--EGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGM----LQAGSLLCFDKLVAEGTDPAYAEK 251 (487)
T ss_pred ecCCCCc--hHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhH----HHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3444 5677778888888754 222 1 2 344443444443 223344555666789999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy316 276 IGAQLLKGSGQLVHK 290 (341)
Q Consensus 276 lv~~~~~gs~~l~~~ 290 (341)
.+..++.-..+++.+
T Consensus 252 ~~~~~~E~I~e~i~e 266 (487)
T PRK05225 252 LIQFGWETITEALKQ 266 (487)
T ss_pred HHhhhHHHHHHHHHh
Confidence 988888887777755
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-08 Score=92.13 Aligned_cols=229 Identities=17% Similarity=0.182 Sum_probs=148.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
-.+||+|||+|+-|.+-+.+|.++|+ +|++--|.... .++..+ .|..+.+.+|+++.+|+|++-+|+..-.+|.
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGl----nViiGlr~g~~s~~kA~~-dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy 91 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGL----NVIIGLRKGSSSWKKAKE-DGFKVYTVEEAAKRADVVMILLPDEQQKEVY 91 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCC----cEEEEecCCchhHHHHHh-cCCEeecHHHHhhcCCEEEEeCchhhHHHHH
Confidence 45799999999999999999999996 77776664333 444444 4775567899999999999999999999999
Q ss_pred H-HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh-------cCceEEEEeCC-CCCc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY-------GKGITGMCHDV-HLDK 212 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v-------~~g~~~l~~~~-~~~~ 212 (341)
+ +| .|.| ++++.+. .+-|..+-.-.-.-| .+.. ++-+-|-.|... |.|+..++.-. +.+-
T Consensus 92 ~~~I-~p~L--k~G~aL~-FaHGfNihf~~i~pp------kdvd-V~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG 160 (338)
T COG0059 92 EKEI-APNL--KEGAALG-FAHGFNIHFGLIVPP------KDVD-VIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASG 160 (338)
T ss_pred HHHh-hhhh--cCCceEE-eccccceecceecCC------ccCc-EEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCc
Confidence 7 78 9999 7887544 556665432111112 4455 777778777643 56765554332 2344
Q ss_pred cHHHHHHHHHHHHhcCCe--EEc-----CC---CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIV--EII-----PE---SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLK 282 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~--~~v-----~e---~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~ 282 (341)
...+........+|-. -++ .| +++..=+.|+|-.. .++.+--|..++.|.+++.|+.-..+-+.
T Consensus 161 --~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~----~li~agfetLvEaGy~PE~AyfE~lhE~k 234 (338)
T COG0059 161 --KALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQ----ALIKAGFETLVEAGYQPELAYFECLHELK 234 (338)
T ss_pred --hHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5677778888888731 112 12 34444445544322 23334445567899999988876666555
Q ss_pred HHHHHHHh-hhhhccccCCCChHHHHHhcCCCc
Q psy316 283 GSGQLVHK-DLLRMDHAAQAHPAVIKDQICSPG 314 (341)
Q Consensus 283 gs~~l~~~-~~~~~~~~~~~~p~~l~~~v~tpg 314 (341)
=...++.+ ++..|.+ +-+++.++-+-+..|.
T Consensus 235 lIvdLiyegGi~~M~~-siSnTAeyG~~~~gpr 266 (338)
T COG0059 235 LIVDLIYEGGITNMRY-SISNTAEYGDYTRGPR 266 (338)
T ss_pred HHHHHHHHhhHHHHHH-hcCCHHHhcccccCce
Confidence 55555543 2333333 5556777777776664
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-08 Score=99.27 Aligned_cols=202 Identities=16% Similarity=0.136 Sum_probs=119.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------C------------c-cccChHHHhhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------D------------F-ALNDNHRIIKEA 125 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------g------------~-~~~s~~e~~~~a 125 (341)
|||+|||+|.+|..+|..|.++|+ .++|+++|+++++.+.+++.. | + .+++..+++++|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~--g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCP--DIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 689999999999999999998863 358999999999999865421 1 2 334456678999
Q ss_pred CEEEEeeC-hH--------------HHHHHHHHhhhcccccCCCcEEEE--ecCCCCHHHHHHhccccCCCCCCCCeEEE
Q psy316 126 EYVFLAMK-PQ--------------YLDSAIQGLVNDKVTLNSSRCIIS--MLVGVDLETLKKKLSVLVPNPNDAPTIIR 188 (341)
Q Consensus 126 DvIilaV~-~~--------------~v~~vl~~i~~~~l~~~~~~iIVs--~~agi~~~~l~~~l~~~~~~~~~~~~vvr 188 (341)
|++|+||| |. .+.++++++ .+++ +++++||- +..+-+.+.+...+.... .+..+.+.
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i-~~~l--~~~~lVv~~STvp~Gtt~~~~~~l~~~~---~g~~f~v~ 153 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMI-ADVS--KSDKIVVEKSTVPVKTAEAIEKILTHNS---KGINFQIL 153 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHH-HhhC--CCCcEEEEeCCCCCChHHHHHHHHHhhC---CCCCeEEE
Confidence 99999995 22 578888999 8888 78887772 222222344444333100 11111122
Q ss_pred EcC-----Cchhhh-cCceEEEEeCCC--CCccHHHHHHHHHHHHhcC--CeEEcCCCchhHHHHHhcchHHH---HHHH
Q psy316 189 VMP-----NTAMKY-GKGITGMCHDVH--LDKESEHLNMAIKIMEQGG--IVEIIPESMMNSFGAIAGSGCAY---LFLV 255 (341)
Q Consensus 189 ~mp-----n~p~~v-~~g~~~l~~~~~--~~~~~~~~~~v~~ll~~lG--~~~~v~e~~~d~~~al~g~gpa~---~~~~ 255 (341)
..| .....- ..-..++.++.+ ..+ +..+.+..|++.+- ..+.+..-.-..++.++. ++| -..+
T Consensus 154 ~~PErl~~G~a~~d~~~p~riViG~~~~~~~~--~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~e--N~~ra~~Iaf 229 (473)
T PLN02353 154 SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQ--KAVQALKDVYAHWVPEERIITTNLWSAELSKLAA--NAFLAQRISS 229 (473)
T ss_pred ECCCccCCCCcccccCCCCEEEEccCCchhhH--HHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHH--HHHHHHHHHH
Confidence 222 211111 111123333321 112 35677788888774 233333222222333332 233 3346
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Q psy316 256 MDAMADGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 256 ~eal~ea~~~~Gl~~~~a~~lv~ 278 (341)
+..|+..+.+.|++..+..+.+.
T Consensus 230 ~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 230 VNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhC
Confidence 67777888899999887665543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.3e-09 Score=91.92 Aligned_cols=94 Identities=24% Similarity=0.355 Sum_probs=66.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------------------Cc-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------------------DF-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------------------g~-~~~s~~e~~~~ 124 (341)
|||+|||+|.+|..+|..|.++|+ +|+.+|.++++.+.+++.. .+ .+.+..+++.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~----~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH----QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS----EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCC----EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhc
Confidence 799999999999999999999995 9999999999988876421 12 34566777899
Q ss_pred CCEEEEeeC-h---------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 125 AEYVFLAMK-P---------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 125 aDvIilaV~-~---------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+|++|+||| | ..+.++++++ .+++ +++++||- -+.+++
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i-~~~l--~~~~lvV~-~STvpp 124 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESI-APVL--RPGDLVVI-ESTVPP 124 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHH-HHHH--CSCEEEEE-SSSSST
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHH-HHHH--hhcceEEE-ccEEEE
Confidence 999999997 2 2378888999 8888 78877773 344554
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-08 Score=103.32 Aligned_cols=172 Identities=9% Similarity=0.074 Sum_probs=123.6
Q ss_pred EEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcCCchhh--------
Q psy316 128 VFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMPNTAMK-------- 196 (341)
Q Consensus 128 IilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-------- 196 (341)
||||+|+..+.++++++ .+++ +++++|.++ ++++.. .+.+.++. ...+ ++..||..-.+
T Consensus 1 vila~Pv~~~~~~~~~~-~~~~--~~~~~vtDv-~SvK~~i~~~~~~~l~~-----~~~~-fvg~HPMaG~e~~G~~~a~ 70 (673)
T PRK11861 1 VLLAAPVAQTGPLLARI-APFL--DASTIVTDA-GSTKSDVVAAARAALGA-----RIGQ-FVPGHPIAGRESSGVDAAL 70 (673)
T ss_pred CEEEcCHHHHHHHHHHH-hhhC--CCCcEEEec-CcccHHHHHHHHHhccc-----cCCe-EEecCCcCcCcchhhhhhC
Confidence 69999999999999999 9988 777666655 667654 33445541 1134 56666532211
Q ss_pred ---hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHH
Q psy316 197 ---YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDM 272 (341)
Q Consensus 197 ---v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~ 272 (341)
+.....++++.+..+. +..+.++++++.+|..+ +++.+.||.++|+.++.|++++.. ++....+. .+.+.
T Consensus 71 ~~Lf~~~~~il~p~~~~~~--~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~---l~~~~~~~-~~~~~ 144 (673)
T PRK11861 71 ADLYVGRNVVLCALPENAP--DALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFA---LVEQILGE-SDAEL 144 (673)
T ss_pred hhHhCCCeEEEecCCCCCH--HHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHH---HHHHHhhc-cChhH
Confidence 1222456777666566 78999999999999764 569999999999999999977764 44433222 13455
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 273 ALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 273 a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
...+...+|+...++.. .+|..|.+.+.++.....+.|+.|.+
T Consensus 145 ~~~~a~~gfrd~tRia~-----------~~p~lw~di~~~N~~~i~~~l~~~~~ 187 (673)
T PRK11861 145 KFSYAAGGFRDFTRIAA-----------SSPEMWRDVCLANRAALLDELDAYTA 187 (673)
T ss_pred HHHhcccchhccccccc-----------CCHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 56788888888877653 48999999999999888888887776
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-07 Score=88.99 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCChhhh-------hh-----------cCcC-----------C-Cc-cccC--hHHH
Q psy316 75 MAQAVATSLIRTGLCIPAQIIASAPSERFK-------LH-----------WPEP-----------M-DF-ALND--NHRI 121 (341)
Q Consensus 75 mG~aia~~L~~~G~~~~~~V~v~~r~~e~~-------~~-----------l~~~-----------~-g~-~~~s--~~e~ 121 (341)
||..||..++.+|+ +|.++|++++.+ ++ +.+. + .+ .+.+ ..++
T Consensus 1 MG~giA~~~a~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a 76 (314)
T PRK08269 1 MGQGIALAFAFAGH----DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADA 76 (314)
T ss_pred CcHHHHHHHHhCCC----eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHH
Confidence 78999999999995 999999998431 11 1110 0 12 2222 5577
Q ss_pred hhcCCEEEEeeCh-HHHH-HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMKP-QYLD-SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~~-~~v~-~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
+++||+||.||+. ..++ .++.++ ...+ +++++|.|.++++++..|.+.+. ...+ ++.++.-.|.....
T Consensus 77 ~~~aD~ViEav~E~~~~K~~~f~~l-~~~~--~~~~ilaSntS~~~~~~la~~~~------~p~r-~~g~Hf~~Pp~~~~ 146 (314)
T PRK08269 77 LADADLVFEAVPEVLDAKREALRWL-GRHV--DADAIIASTTSTFLVTDLQRHVA------HPER-FLNAHWLNPAYLMP 146 (314)
T ss_pred hccCCEEEECCcCCHHHHHHHHHHH-HhhC--CCCcEEEEccccCCHHHHHhhcC------Cccc-EEEEecCCccccCc
Confidence 8999999999985 3444 466777 7778 89999999999999999998876 3456 77777655544332
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~ 278 (341)
..-+..++..++ +.++.+.++++.+|+.+ ++.+.- ..+ +. -.+...+.|++.. +.+.|+++++..+++.
T Consensus 147 -lvEVv~g~~t~~--e~~~~~~~ll~~lGk~~v~v~d~~-Gfi--~n---ri~~~~l~EAl~l-~e~g~~~~e~iD~a~~ 216 (314)
T PRK08269 147 -LVEVSPSDATDP--AVVDRLAALLERIGKVPVVCGPSP-GYI--VP---RIQALAMNEAARM-VEEGVASAEDIDKAIR 216 (314)
T ss_pred -eEEEeCCCCCCH--HHHHHHHHHHHHcCCcEEEecCCC-Ccc--hH---HHHHHHHHHHHHH-HHhCCCCHHHHHHHHH
Confidence 223456666777 89999999999999864 554321 111 01 1123334444433 3456677777766655
Q ss_pred H
Q psy316 279 Q 279 (341)
Q Consensus 279 ~ 279 (341)
.
T Consensus 217 ~ 217 (314)
T PRK08269 217 T 217 (314)
T ss_pred h
Confidence 3
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=94.05 Aligned_cols=79 Identities=9% Similarity=0.143 Sum_probs=65.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||||||+|+||..+++.|.+.+. ...-+.+++|++++++.+.++++. ...+.++++.++|+|++|++++.+.+++.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~-~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~ 80 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRI-NAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVVPK 80 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCC-CeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHHHH
Confidence 689999999999999999987641 112366899999998888776777 677888888899999999999998888776
Q ss_pred h
Q psy316 144 L 144 (341)
Q Consensus 144 i 144 (341)
+
T Consensus 81 a 81 (265)
T PRK13304 81 S 81 (265)
T ss_pred H
Confidence 5
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.6e-07 Score=85.89 Aligned_cols=242 Identities=15% Similarity=0.158 Sum_probs=140.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------------------C-c-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------------------D-F-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------------------g-~-~~~s~~e~~~~ 124 (341)
|||+|||+|=.|...+..|.+.|| +|++.|.++++.+.|++.. | + .++|..+++++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH----eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH----EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC----eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc
Confidence 789999999999999999999994 9999999999998876521 1 3 45677788999
Q ss_pred CCEEEEeeC--hH--------HHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhccccCCCCCCCCeEEEEcC
Q psy316 125 AEYVFLAMK--PQ--------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLSVLVPNPNDAPTIIRVMP 191 (341)
Q Consensus 125 aDvIilaV~--~~--------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~~~~~~~~~~~~vvr~mp 191 (341)
+|++|+||+ +. .++.+++++ .+++ +..++||. -++++ .+.+++.+.... .... +.+..
T Consensus 77 adv~fIavgTP~~~dg~aDl~~V~ava~~i-~~~~--~~~~vvV~-KSTVPvGt~~~v~~~i~~~~---~~~~--f~v~~ 147 (414)
T COG1004 77 ADVVFIAVGTPPDEDGSADLSYVEAVAKDI-GEIL--DGKAVVVI-KSTVPVGTTEEVRAKIREEN---SGKD--FEVAS 147 (414)
T ss_pred CCEEEEEcCCCCCCCCCccHHHHHHHHHHH-Hhhc--CCCeEEEE-cCCCCCCchHHHHHHHHhhc---ccCC--ceEec
Confidence 999999995 22 367788888 8887 55566663 23444 345544433100 0011 11222
Q ss_pred CchhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHhc---CCeEEcCCCchhHHHHHhcchHHHHHH---HH
Q psy316 192 NTAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQG---GIVEIIPESMMNSFGAIAGSGCAYLFL---VM 256 (341)
Q Consensus 192 n~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~l---G~~~~v~e~~~d~~~al~g~gpa~~~~---~~ 256 (341)
| |....+|. .++.... ++ ...+.+++|+..+ ..++.+..-.-..+..++. ++|++. |+
T Consensus 148 N-PEFLREG~Av~D~~~PdRIViG~~--~~--~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaa--NafLAtKIsFi 220 (414)
T COG1004 148 N-PEFLREGSAVYDFLYPDRIVIGVR--SE--RAAAVLRELYAPFLRQDVPILFTDLREAELIKYAA--NAFLATKISFI 220 (414)
T ss_pred C-hHHhcCcchhhhccCCCeEEEccC--Ch--hHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHH--HHHHHHHHHHH
Confidence 2 44444442 1223222 12 3466777777665 4444442211122233332 466654 67
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHH
Q psy316 257 DAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336 (341)
Q Consensus 257 eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a 336 (341)
..+...+.+.|++-++..+-+..=-+=....+ + .|.-.. --|=|. -|.+-++..++.+....+.+|
T Consensus 221 NEia~ice~~g~D~~~V~~gIGlD~RIG~~fl--------~-aG~GyG----GsCfPK-D~~AL~~~a~~~~~~~~ll~a 286 (414)
T COG1004 221 NEIANICEKVGADVKQVAEGIGLDPRIGNHFL--------N-AGFGYG----GSCFPK-DTKALIANAEELGYDPNLLEA 286 (414)
T ss_pred HHHHHHHHHhCCCHHHHHHHcCCCchhhHhhC--------C-CCCCCC----CcCCcH-hHHHHHHHHHhcCCchHHHHH
Confidence 77888889999997765443321111111111 1 111100 012231 256667777777777777777
Q ss_pred HHhh
Q psy316 337 ARRT 340 (341)
Q Consensus 337 ~~~a 340 (341)
+.++
T Consensus 287 vv~v 290 (414)
T COG1004 287 VVEV 290 (414)
T ss_pred HHHH
Confidence 6554
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-08 Score=93.36 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=76.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
..++|||||+|+||+++|+.|...|. +|++|+|+++....... ...+..+++++||+|++++|.. ....++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~----~V~~~d~~~~~~~~~~~----~~~~l~ell~~aDiVil~lP~t~~t~~li 216 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA----TITAYDAYPNKDLDFLT----YKDSVKEAIKDADIISLHVPANKESYHLF 216 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEEeCChhHhhhhhh----ccCCHHHHHhcCCEEEEeCCCcHHHHHHH
Confidence 34689999999999999999998885 99999998765332111 3457889999999999999954 334444
Q ss_pred -HHhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
.++ .+.+ +++.++|++.-|.- .+.|.+.+.
T Consensus 217 ~~~~-l~~m--k~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 217 DKAM-FDHV--KKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred hHHH-HhcC--CCCcEEEEcCCccccCHHHHHHHHH
Confidence 455 5667 88999999987644 456666665
|
|
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-07 Score=84.79 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=102.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCC---CCCCeEEEEcCChh------hhhhc-CcC-----C--------Cc-cccCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGL---CIPAQIIASAPSER------FKLHW-PEP-----M--------DF-ALNDN 118 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~---~~~~~V~v~~r~~e------~~~~l-~~~-----~--------g~-~~~s~ 118 (341)
++.||+|||.||+|++|++.+..+-. .-..+|..|-+.++ ++... .+. | ++ ..+|.
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 46799999999999999998765421 11246777765332 22211 111 1 23 56788
Q ss_pred HHHhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH-----------HHHHhccccCCCCCCCCeEE
Q psy316 119 HRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE-----------TLKKKLSVLVPNPNDAPTII 187 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~-----------~l~~~l~~~~~~~~~~~~vv 187 (341)
.+++.+||++++.+|++.+..++++| ..++ +++...||+..|+... .+.+.++ -... +
T Consensus 100 ~ea~~dADilvf~vPhQf~~~ic~~l-~g~v--k~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg------I~~~--v 168 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQFIPRICEQL-KGYV--KPGATAISLIKGVEVGEEGPGIRLISQIIHRALG------IPCS--V 168 (372)
T ss_pred HHHhccCCEEEEeCChhhHHHHHHHH-hccc--CCCCeEEEeecceeccCCCCceeehHHHHHHHhC------CCce--e
Confidence 99999999999999999999999999 9999 8999999999998742 2334444 1122 3
Q ss_pred EEcCCchhhhcCce---EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 188 RVMPNTAMKYGKGI---TGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 188 r~mpn~p~~v~~g~---~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
-..||.+.++.+.. +.+.+.+. . +.-..+..||+.=-..+++
T Consensus 169 L~GaNiA~EVa~~~f~e~tIg~~~~--~--~~~~~l~~lf~~p~FrV~~ 213 (372)
T KOG2711|consen 169 LMGANIASEVANEKFCETTIGYKDK--K--EAGILLKKLFRTPYFRVVV 213 (372)
T ss_pred ecCCchHHHHHhccccceeEeccch--h--hcchHHHHHhCCCceEEEE
Confidence 34578887774432 22333221 1 2223577788776655554
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-06 Score=81.41 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---------------cccChHHHhhcCCEEEEeeChHHHH
Q psy316 74 NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---------------ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 74 ~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---------------~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.||+.++..|.++|+ +|++++|+ ++.+.++++ |+ ...++.+ ....|+||+|||..++.
T Consensus 1 aiG~~~a~~L~~~G~----~V~l~~r~-~~~~~i~~~-Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~ 73 (293)
T TIGR00745 1 AVGSLYGAYLARAGH----DVTLLARG-EQLEALNQE-GLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTE 73 (293)
T ss_pred CchHHHHHHHHhCCC----cEEEEecH-HHHHHHHHC-CcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHH
Confidence 378999999999984 99999997 666666542 32 1122233 56899999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEEEc---------CCchhhhcCceEEEEeCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIRVM---------PNTAMKYGKGITGMCHDV 208 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr~m---------pn~p~~v~~g~~~l~~~~ 208 (341)
++++.+ ++.+ .++++||++.+|+.. +.+.+.++. .+ ++... |+.-...+.|...+...+
T Consensus 74 ~~l~~l-~~~l--~~~~~iv~~qNG~g~~~~l~~~~~~-------~~-v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~ 142 (293)
T TIGR00745 74 EAAALL-LPLI--GKNTKVLFLQNGLGHEERLRELLPA-------RR-ILGGVVTHGAVREEPGVVHHAGLGATKIGDYV 142 (293)
T ss_pred HHHHHh-Hhhc--CCCCEEEEccCCCCCHHHHHHHhCc-------cC-EEEEEEEEeeEEcCCcEEEEeccccEEEecCC
Confidence 999999 9998 888999999999974 567776661 23 32211 221111122322222221
Q ss_pred CCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcc
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGS 247 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~ 247 (341)
. .. +....+.++|+..|....+.++ .++.++++.++
T Consensus 143 ~-~~--~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~ 191 (293)
T TIGR00745 143 G-EN--EAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDC 191 (293)
T ss_pred C-ch--HHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCC
Confidence 1 12 4456778888888876555433 25667777765
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-08 Score=91.34 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
++||||||+|+||..+++.|.+.. +..++. +++|++++.+.+.+++|. .+.+.++++.++|+|++|+|+....++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~--~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGL--PGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcC--CCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHHH
Confidence 378999999999999999998640 123654 899999998888776774 567888888999999999999888887
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
....
T Consensus 84 ~~~a 87 (271)
T PRK13302 84 VEPV 87 (271)
T ss_pred HHHH
Confidence 7665
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-08 Score=86.68 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=67.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccChHHHhhcCCEEEEeeChHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALNDNHRIIKEAEYVFLAMKPQYL- 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s~~e~~~~aDvIilaV~~~~v- 137 (341)
.++|+|||+|.||.++++.|.+.|. ++|++++|++++++.+.++++. ...+..+.+.++|+||.|+|+...
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~---~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGA---AKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 4689999999999999999998862 5899999999888776554431 344566678899999999998764
Q ss_pred -HHHHHHhhhcccccCCCcEEEEec
Q psy316 138 -DSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 138 -~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
..+... ...+ +++++++++.
T Consensus 96 ~~~~~~~--~~~~--~~~~~v~D~~ 116 (155)
T cd01065 96 GDELPLP--PSLL--KPGGVVYDVV 116 (155)
T ss_pred CCCCCCC--HHHc--CCCCEEEEcC
Confidence 222211 1234 6788888774
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-06 Score=75.85 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=126.9
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhcCCCCCCeEEEEcCChh-----hhhhcCcCCCc-cccCh
Q psy316 65 TKVGFIGAGNM--------------------AQAVATSLIRTGLCIPAQIIASAPSER-----FKLHWPEPMDF-ALNDN 118 (341)
Q Consensus 65 ~kIgiIG~G~m--------------------G~aia~~L~~~G~~~~~~V~v~~r~~e-----~~~~l~~~~g~-~~~s~ 118 (341)
|||++.|+||- |..||-.+..+|| +|.+.++|.+ ..+++.+ -|+ .++|.
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH----DVVLaePn~d~~dd~~w~~ved-AGV~vv~dD 76 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH----DVVLAEPNRDIMDDEHWKRVED-AGVEVVSDD 76 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC----cEEeecCCccccCHHHHHHHHh-cCcEEecCc
Confidence 67888888873 5678888899995 9999987643 3445555 488 77777
Q ss_pred HHHhhcCCEEEEeeChH-HHHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCC-c
Q psy316 119 HRIIKEAEYVFLAMKPQ-YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPN-T 193 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~~-~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn-~ 193 (341)
.++++.+++.+|.+|-. ..-.+.++| .+++ ..+.+|+.++.-.++ ..|+..|.. + +.+.. +..++|. .
T Consensus 77 ~eaa~~~Ei~VLFTPFGk~T~~Iarei-~~hv--pEgAVicnTCT~sp~vLy~~LE~~Lr~--k-R~dVG-vssmHPAgv 149 (340)
T COG4007 77 AEAAEHGEIHVLFTPFGKATFGIAREI-LEHV--PEGAVICNTCTVSPVVLYYSLEGELRT--K-REDVG-VSSMHPAGV 149 (340)
T ss_pred hhhhhcceEEEEecccchhhHHHHHHH-HhhC--cCCcEecccccCchhHHHHHhhhhhcC--c-hhhcC-ccccCCCCC
Confidence 88999999999999974 777888888 8888 788888776543333 233443431 0 01222 3333332 2
Q ss_pred hhhhcCceEEEEeC-----CCCCccHHHHHHHHHHHHhcCCeEEc-CCCchhHHHHHhcchHHHHHHHHHHHHHHH----
Q psy316 194 AMKYGKGITGMCHD-----VHLDKESEHLNMAIKIMEQGGIVEII-PESMMNSFGAIAGSGCAYLFLVMDAMADGA---- 263 (341)
Q Consensus 194 p~~v~~g~~~l~~~-----~~~~~~~~~~~~v~~ll~~lG~~~~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea~---- 263 (341)
|..-.++..++... .-.++ ++.+++.+|.++.|+..++ +.+....+.- .+.-.....++++.+..
T Consensus 150 PGtp~h~~yviagr~t~g~elATe--EQi~r~velaes~Gk~~yv~padv~s~VaD---mg~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 150 PGTPQHGHYVIAGRSTEGKELATE--EQIERCVELAESTGKEVYVLPADVVSAVAD---MGVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred CCCCCCceEEEeccCCCceeeccH--HHHHHHHHHHHhcCCceEecCHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHH
Confidence 33334455444411 11345 8899999999999997654 6543333222 22223334444444432
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 264 VKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 264 ~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.-.|-|.+...+-+..++.-.+.++..
T Consensus 225 qIi~AP~eMIekQilmtLqTmAsLvet 251 (340)
T COG4007 225 QIIGAPKEMIEKQILMTLQTMASLVET 251 (340)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 125666665555555555555555543
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=92.50 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=77.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..++|||||+|+||+.+++.|...|. +|.+|+|++...+.. ++.|+ ...+.+++++.||+|++++|. ...+.+
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~----~V~~~dr~~~~~~~~-~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~l 265 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV----KLHYTDRHRLPEEVE-QELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHL 265 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEECCCCCchhhH-hhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHH
Confidence 35789999999999999999998885 999999986332222 22466 456889999999999999994 556666
Q ss_pred HH-HhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
+. +. ...+ +++.++|++.-|-- .+.|.+.+.
T Consensus 266 i~~~~-l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 266 FDADV-LSRM--KRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred hCHHH-HhcC--CCCcEEEECCCCchhhHHHHHHHHH
Confidence 63 34 4456 88999999876643 455655554
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=91.68 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=77.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..++|||||+|+||+.+++.|..-|. +|.+|+|+....+...+ .|+ ...+.++++.+||+|++++|. ...+.+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~----~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~l 272 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC----NLLYHDRLKMDPELEKE-TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGM 272 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC----EEEEECCCCcchhhHhh-cCceecCCHHHHHhhCCEEEEeCCCCHHHHHH
Confidence 45799999999999999999998885 89999997543333222 566 556899999999999999994 566666
Q ss_pred HH-HhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
+. ++ ...+ +++.++|++.-|-- .+.|.+.+.
T Consensus 273 i~~~~-l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 273 FNKER-IAKM--KKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred hCHHH-HhhC--CCCeEEEECCCCchhhHHHHHHHHH
Confidence 63 34 4556 88999999875533 455656554
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=91.24 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..++|||||+|+||+.+|+.|...|. +|.+|+|++.... ..+.++...+..+++++||+|++++|. .....++
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~~~--~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM----RILYYSRTRKPEA--EKELGAEYRPLEELLRESDFVSLHVPLTKETYHMI 222 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCCCChhh--HHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhcc
Confidence 46899999999999999999998885 8999999764422 122355334788999999999999995 4455555
Q ss_pred -HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|+++-|- +.+.|.+.+.
T Consensus 223 ~~~~-~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 223 NEER-LKLM--KPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CHHH-HhcC--CCCeEEEECcCchhcCHHHHHHHHH
Confidence 344 4556 7899999987653 3456666665
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.1e-07 Score=73.89 Aligned_cols=102 Identities=16% Similarity=0.303 Sum_probs=75.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~v 140 (341)
+||||||+|.+|......+.+.. +..++ .++++++++++.+.+++|+ .++|.+++++ +.|+|++++|+....+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~--~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~ 78 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS--PDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEI 78 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT--TTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcC--CCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHH
Confidence 48999999999999999998873 12354 5899999999988777888 8889999887 79999999999877777
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHHHHHhc
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLETLKKKL 173 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l 173 (341)
+... .. ..-.+++.=--+.+.++.++..
T Consensus 79 ~~~~-l~----~g~~v~~EKP~~~~~~~~~~l~ 106 (120)
T PF01408_consen 79 AKKA-LE----AGKHVLVEKPLALTLEEAEELV 106 (120)
T ss_dssp HHHH-HH----TTSEEEEESSSSSSHHHHHHHH
T ss_pred HHHH-HH----cCCEEEEEcCCcCCHHHHHHHH
Confidence 6655 22 1224555432344566655543
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-06 Score=80.95 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=116.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------------------C-c-cccChHHHh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------------------D-F-ALNDNHRII 122 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------------------g-~-~~~s~~e~~ 122 (341)
|.++|++||+|-+|..+|-.+.++|+ +|+.+|.|+.+.+.+.+-. | + .+++. +.+
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~----~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l 82 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGF----KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EEL 82 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCC----ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhc
Confidence 55899999999999999999999996 9999999999988876421 1 1 23333 345
Q ss_pred hcCCEEEEeeCh----------HHHHHHHHHhhhcccccCCCcEEE--EecCCCCHHHHHHhcccc-CCCCCCCCe----
Q psy316 123 KEAEYVFLAMKP----------QYLDSAIQGLVNDKVTLNSSRCII--SMLVGVDLETLKKKLSVL-VPNPNDAPT---- 185 (341)
Q Consensus 123 ~~aDvIilaV~~----------~~v~~vl~~i~~~~l~~~~~~iIV--s~~agi~~~~l~~~l~~~-~~~~~~~~~---- 185 (341)
+.||++|+|||. ..+.+..+.+ .++| ++|++|| |++-.-+.+.+..++-+. -+..-+..+
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sI-a~~L--~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay 159 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYVESAARSI-APVL--KKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY 159 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHHHHHHHHH-HHhc--CCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee
Confidence 699999999972 1366777888 9999 8998877 332222344443322110 000000110
Q ss_pred -EEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCC-eEEcCCCchhHHHHHhcch-HHHHHHHHHHHHHH
Q psy316 186 -IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGI-VEIIPESMMNSFGAIAGSG-CAYLFLVMDAMADG 262 (341)
Q Consensus 186 -vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~-~~~v~e~~~d~~~al~g~g-pa~~~~~~eal~ea 262 (341)
--|++|+....--....=+.+| .++ ...+.+..|.+.+=. ++.++.........+.-.. -.---.++..|+-.
T Consensus 160 sPERv~PG~~~~el~~~~kVIgG--~tp--~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 160 SPERVLPGNVLKELVNNPKVIGG--VTP--KCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred CccccCCCchhhhhhcCCceeec--CCH--HHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 1366665432211111112333 234 556666777777644 3445443222223332210 01111234455555
Q ss_pred HHHcCCCHHHHHHHHH
Q psy316 263 AVKQGIPRDMALRIGA 278 (341)
Q Consensus 263 ~~~~Gl~~~~a~~lv~ 278 (341)
+.++|++.-++.+++.
T Consensus 236 ~~~~GIdvwevIeaAn 251 (436)
T COG0677 236 CNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHhCCcHHHHHHHhc
Confidence 7789999777766554
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-07 Score=88.87 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHH-HH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYL-DS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v-~~ 139 (341)
-.++|||||+|+||+++++.|.+ .| .+|++|+|++.... . ..+ ...+.++++++||+|++++|.... ..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g----~~V~~~d~~~~~~~---~-~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYG----SDVVAYDPFPNAKA---A-TYVDYKDTIEEAVEGADIVTLHMPATKYNHY 216 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC----CEEEEECCCccHhH---H-hhccccCCHHHHHHhCCEEEEeCCCCcchhh
Confidence 35789999999999999999953 45 48999998765421 1 123 445788999999999999996543 33
Q ss_pred HH-HHhhhcccccCCCcEEEEecCCCCH--HHHHHhcc
Q psy316 140 AI-QGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLS 174 (341)
Q Consensus 140 vl-~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~ 174 (341)
++ .+. .+.+ +++.++|+++.|... +.+.+.+.
T Consensus 217 li~~~~-l~~m--k~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 217 LFNADL-FKHF--KKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hcCHHH-HhcC--CCCcEEEECCCCcccCHHHHHHHHH
Confidence 33 234 4556 789999999877553 44545444
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-07 Score=88.03 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.++|+|||+|.||..+++.|...|. .+|++++|++++++.+++++|. . ..+..+.+.++|+||.|++.....++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~---~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~ 254 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV---AEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKI 254 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHH
Confidence 5789999999999999999988663 5899999999998888776765 2 23456778899999999986655444
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
+..+..... .++.++|+++.+
T Consensus 255 ~~~~~~~~~--~~~~~viDlavP 275 (311)
T cd05213 255 VERAMKKRS--GKPRLIVDLAVP 275 (311)
T ss_pred HHHHHhhCC--CCCeEEEEeCCC
Confidence 444312211 256788888643
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-07 Score=82.78 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=72.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..++|||||+|++|+.+++.+..-|. +|++|+|+......... .++...+.+++++.||+|++++|. .....++
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~----~V~~~d~~~~~~~~~~~-~~~~~~~l~ell~~aDiv~~~~plt~~T~~li 109 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGM----RVIGYDRSPKPEEGADE-FGVEYVSLDELLAQADIVSLHLPLTPETRGLI 109 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-----EEEEEESSCHHHHHHHH-TTEEESSHHHHHHH-SEEEE-SSSSTTTTTSB
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCc----eeEEecccCChhhhccc-ccceeeehhhhcchhhhhhhhhccccccceee
Confidence 45899999999999999999998885 99999998776542323 344455889999999999999984 2222233
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
++. -..+ +++.++|++.-| ++.+.+.+.+.
T Consensus 110 ~~~~-l~~m--k~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 110 NAEF-LAKM--KPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SHHH-HHTS--TTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred eeee-eecc--ccceEEEeccchhhhhhhHHHHHHh
Confidence 122 2235 788899998755 33456666665
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-07 Score=85.64 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=67.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.++++|||+|.||.++++.|...|. +|++++|++++.+.+.+ .|. ...+..+.++++|+||.++|...+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~----~V~v~~R~~~~~~~~~~-~g~~~~~~~~l~~~l~~aDiVint~P~~ii~-- 223 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGA----RVFVGARSSADLARITE-MGLIPFPLNKLEEKVAEIDIVINTIPALVLT-- 223 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-CCCeeecHHHHHHHhccCCEEEECCChHHhC--
Confidence 4689999999999999999999884 89999999887766544 454 2334567788999999999876432
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+. ...+ +++.+||++..
T Consensus 224 -~~~-l~~~--k~~aliIDlas 241 (287)
T TIGR02853 224 -ADV-LSKL--PKHAVIIDLAS 241 (287)
T ss_pred -HHH-HhcC--CCCeEEEEeCc
Confidence 222 2335 67889998864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >KOG2653|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.4e-06 Score=77.28 Aligned_cols=252 Identities=17% Similarity=0.143 Sum_probs=144.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC--CC--c-cccChHHH---hhcCCEEEEeeCh-H
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP--MD--F-ALNDNHRI---IKEAEYVFLAMKP-Q 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~--~g--~-~~~s~~e~---~~~aDvIilaV~~-~ 135 (341)
+.||+||++.||+.++.++.++|+ .|.+|||+..+.+.+.++ .| + -..|+++. ++..-+|++.||. .
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf----~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~ 82 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGF----TVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGA 82 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCc----eEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCC
Confidence 569999999999999999999996 999999998887754321 12 3 45677776 4578999999986 5
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEEcCCch-hh--hcCceEEEEeCCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRVMPNTA-MK--YGKGITGMCHDVH 209 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~mpn~p-~~--v~~g~~~l~~~~~ 209 (341)
.+...++++ .|+| .++.+||+--+..=.++. +++.. .+ +.-+..... .+ ...|.+.+..+
T Consensus 83 pVD~~I~~L-~p~L--ekgDiIIDGGNs~y~dT~RR~~el~k------~G---ilfvG~GVSGGEEGAR~GPSlMpGg-- 148 (487)
T KOG2653|consen 83 PVDQFIEEL-VPYL--EKGDIIIDGGNSEYQDTERRCRELAK------KG---ILFVGSGVSGGEEGARYGPSLMPGG-- 148 (487)
T ss_pred cHHHHHHHH-Hhhc--CCCCEEEeCCcccCcchHHHHHHHHh------cC---cEEEecCccCcccccccCCccCCCC--
Confidence 678888999 9999 889999975443222222 22222 11 111111100 00 11233443333
Q ss_pred CCccHHHHHHHHHHHHhcC-------C-eEEcCCCchhHHHHHhcchHHHH--HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy316 210 LDKESEHLNMAIKIMEQGG-------I-VEIIPESMMNSFGAIAGSGCAYL--FLVMDAMADGAVK-QGIPRDMALRIGA 278 (341)
Q Consensus 210 ~~~~~~~~~~v~~ll~~lG-------~-~~~v~e~~~d~~~al~g~gpa~~--~~~~eal~ea~~~-~Gl~~~~a~~lv~ 278 (341)
++ +....++++|+.+. . +.|+++..-..+..+..+|.-|- ..+.|+.-- ..+ .|++-++.-++..
T Consensus 149 -~~--~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~v-lk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 149 -SK--EAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDV-LKSVLGLSNDEIAEVFD 224 (487)
T ss_pred -Ch--HHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHH-HHHhcCCcHHHHHHHHH
Confidence 24 67777888887652 1 35777654344444443333221 122222211 223 6888776655554
Q ss_pred HHHHHHHH----HHHhhhhhccccCCCCh-HHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHH
Q psy316 279 QLLKGSGQ----LVHKDLLRMDHAAQAHP-AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAAR 338 (341)
Q Consensus 279 ~~~~gs~~----l~~~~~~~~~~~~~~~p-~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~ 338 (341)
..=.|-.+ -+..++.|+.+-.|.+. +.+.|.--.+|.=--..+.+||-+---..+.+|+.
T Consensus 225 ~WN~geleSfLieIT~dIlk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavf 289 (487)
T KOG2653|consen 225 DWNKGELESFLIEITADILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVF 289 (487)
T ss_pred hhcccchhHHHHHHhHHHhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHH
Confidence 42222111 11124556666455432 33444433444335566778877766666766664
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-06 Score=77.28 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=72.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
++||+||||++|..+.+.+. .|-.+-.-+.+|||+.+++..+.+.++. ...+.++.+...|+++-|-.++++++...+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVR-DGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPK 79 (255)
T ss_pred CeEEEEeccHHHHHHHHHHh-cCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhHH
Confidence 58999999999999987554 4423345688999999999988775565 567888888999999999999999998877
Q ss_pred hhhcccccCCCcEEEEecC
Q psy316 144 LVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~a 162 (341)
+ ... ..+.+|+|+-+
T Consensus 80 ~-L~~---g~d~iV~SVGA 94 (255)
T COG1712 80 I-LKA---GIDVIVMSVGA 94 (255)
T ss_pred H-Hhc---CCCEEEEechh
Confidence 6 221 24567888744
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.6e-07 Score=84.29 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=74.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl~ 142 (341)
.++|||||+|+||+.+++.|...|. +|++|+|+++....... + ....+.++++++||+|++++|. ...+.++.
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~----~V~~~~~~~~~~~~~~~-~-~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~ 209 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGF----PLRCWSRSRKSWPGVQS-F-AGREELSAFLSQTRVLINLLPNTPETVGIIN 209 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCCCCCCCcee-e-cccccHHHHHhcCCEEEECCCCCHHHHHHhH
Confidence 4799999999999999999998885 99999987644221111 1 0234678999999999999994 45666663
Q ss_pred -HhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 143 -GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 143 -~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+. ...+ +++.++|++.=|- ..+.|.+.+.
T Consensus 210 ~~~-l~~m--k~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 210 QQL-LEQL--PDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred HHH-HhcC--CCCcEEEECCCccccCHHHHHHHHh
Confidence 33 3456 7899999987553 3566666665
|
|
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-07 Score=82.40 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=105.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-----------C-C-----C-----------c-c
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-----------P-M-----D-----------F-A 114 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-----------~-~-----g-----------~-~ 114 (341)
.+.++|||+|.||+.||+--+.+|+ +|+++|+++..+.+..+ + + + + .
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~----~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGL----NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCC----ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence 4679999999999999999999995 99999999876554321 1 1 0 1 2
Q ss_pred ccChHHHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCC
Q psy316 115 LNDNHRIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPN 192 (341)
Q Consensus 115 ~~s~~e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn 192 (341)
+++..+++.++|+||-++-. +.-+++++++ .... ++++++.+..+.+.+..+...+. ...+ +...+--
T Consensus 87 ~tnv~~~v~dadliiEAivEn~diK~~lF~~l-~~~a--k~~~il~tNTSSl~lt~ia~~~~------~~sr-f~GlHFf 156 (298)
T KOG2304|consen 87 STNVSDAVSDADLIIEAIVENLDIKRKLFKDL-DKIA--KSSTILATNTSSLSLTDIASATQ------RPSR-FAGLHFF 156 (298)
T ss_pred cCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHH-Hhhc--ccceEEeecccceeHHHHHhhcc------Chhh-hceeecc
Confidence 34556778889999988743 3344677777 6666 77889998888888998887776 3345 5544433
Q ss_pred chhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 193 TAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 193 ~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
.|..+-+-+- +...+..++ +.+..+..+-..+|+..+
T Consensus 157 NPvPvMKLvE-Vir~~~TS~--eTf~~l~~f~k~~gKttV 193 (298)
T KOG2304|consen 157 NPVPVMKLVE-VIRTDDTSD--ETFNALVDFGKAVGKTTV 193 (298)
T ss_pred CCchhHHHhh-hhcCCCCCH--HHHHHHHHHHHHhCCCce
Confidence 3333333222 233445666 889999999999998654
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=82.72 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=72.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeCh-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKP-QYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~-~~v~~ 139 (341)
-.++|||||+|+||+.+++.+..-|. +|++|+|+... .++ ...+.++++++||+|++++|. ...+.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~----~V~~~~r~~~~-------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGM----NIYAYTRSYVN-------DGISSIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCCCcc-------cCcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 45899999999999999998776674 99999997421 133 245789999999999999995 44555
Q ss_pred HHH-HhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 140 AIQ-GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 140 vl~-~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
++. +. ...+ +++.++|++.-|- ..+.|.+.+.
T Consensus 190 li~~~~-l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 190 MINSKM-LSLF--RKGLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred CcCHHH-HhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 552 23 3346 7899999887553 3456666665
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.9e-07 Score=75.25 Aligned_cols=69 Identities=28% Similarity=0.302 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc---cccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF---ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~---~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.+++.|||+|.+|++++..|.+.|. .+|++++|+.++++.+.+++ .+ ...+..+.+.++|+||-|+|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~---~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGA---KEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTS---SEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC---CEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 4789999999999999999999995 57999999999999887755 22 3455666788999999999854
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.6e-06 Score=77.45 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=70.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+||+|||+ |+||+.+++.+.+.. ..++ .++++++++.... .++++ ...+..+++.++|+|+.+++|....+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~---~~elvav~d~~~~~~~~~-~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~ 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAE---DLELVAAVDRPGSPLVGQ-GALGVAITDDLEAVLADADVLIDFTTPEATLENL 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCC---CCEEEEEEecCCcccccc-CCCCccccCCHHHhccCCCEEEECCCHHHHHHHH
Confidence 69999998 999999998887642 1244 5689887766555 44667 6778888888899999999998887777
Q ss_pred HHhhhcccccCCCc-EEEEecCCCCHHHHHHh
Q psy316 142 QGLVNDKVTLNSSR-CIISMLVGVDLETLKKK 172 (341)
Q Consensus 142 ~~i~~~~l~~~~~~-iIVs~~agi~~~~l~~~ 172 (341)
... + ..++ +|+. ..|.+.++..++
T Consensus 78 ~~a----l--~~G~~vvig-ttG~s~~~~~~l 102 (257)
T PRK00048 78 EFA----L--EHGKPLVIG-TTGFTEEQLAEL 102 (257)
T ss_pred HHH----H--HcCCCEEEE-CCCCCHHHHHHH
Confidence 654 2 3343 5554 567787665543
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=83.98 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=64.0
Q ss_pred CeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhhcCcCC---C--c-cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLHWPEPM---D--F-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~l~~~~---g--~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.+|+|||+|.||..+++.+.. .+ ..+|++|+|++++++.+.+++ | + ...+.++++.++|+|+.|++..
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~---~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRP---IKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCC---CCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 689999999999999987765 33 368999999999988877643 4 4 5677888999999998888865
Q ss_pred HHHHHHhhhcccccCCCcEEEE
Q psy316 138 DSAIQGLVNDKVTLNSSRCIIS 159 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs 159 (341)
..++.. ..+ ++++.|..
T Consensus 201 ~pvl~~---~~l--~~g~~i~~ 217 (314)
T PRK06141 201 EPLVRG---EWL--KPGTHLDL 217 (314)
T ss_pred CCEecH---HHc--CCCCEEEe
Confidence 344421 235 67774443
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-06 Score=87.90 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=75.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..++|||||+|+||+.+|+.|...|. +|++|+|+... +...+ +|+ ...++++++++||+|++++|. ...+.+
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~d~~~~~-~~~~~-~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~l 210 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAKAFGM----KVLAYDPYISP-ERAEQ-LGVELVDDLDELLARADFITVHTPLTPETRGL 210 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEECCCCCh-hHHHh-cCCEEcCCHHHHHhhCCEEEEccCCChhhccC
Confidence 35789999999999999999998884 99999985221 12222 466 456789999999999999995 355666
Q ss_pred H-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+ .+. ...+ +++.++|+++-|- +.+.|.+.+.
T Consensus 211 i~~~~-l~~m--k~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 211 IGAEE-LAKM--KKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred cCHHH-HhcC--CCCeEEEEcCCCceeCHHHHHHHHH
Confidence 5 233 3356 7899999987553 3456666554
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-06 Score=84.01 Aligned_cols=67 Identities=25% Similarity=0.280 Sum_probs=59.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~ 133 (341)
.+++.|||+|-||...+++|..+|. .+|++.||+.++++.|++++|. ..++..+.+.++|+||.|+-
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~---~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGV---KKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCC---CEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence 4689999999999999999999995 6999999999999999998885 45666778899999999984
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=87.31 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=75.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..++|||||+|+||+.+++.|...|. +|++|+|+... +.... .|+ .. +..+++++||+|++++|. ...+.+
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~----~V~~~d~~~~~-~~~~~-~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~l 211 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGM----KVIAYDPYISP-ERAAQ-LGVELV-SLDELLARADFITLHTPLTPETRGL 211 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC----EEEEECCCCCh-hHHHh-cCCEEE-cHHHHHhhCCEEEEccCCChHhhcC
Confidence 45789999999999999999998885 99999985422 22222 466 44 789999999999999995 455666
Q ss_pred H-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+ .+. ...+ +++.++|++.-|- +.+.|.+.+.
T Consensus 212 i~~~~-l~~m--k~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 212 IGAEE-LAKM--KPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred cCHHH-HhcC--CCCeEEEECCCCceeCHHHHHHHHh
Confidence 6 344 4456 7899999987553 3456666554
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.2e-06 Score=75.81 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=63.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHH-hhcCCEEEEeeChHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRI-IKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~-~~~aDvIilaV~~~~v~~ 139 (341)
|.+||||||+|+||+.+++.|.+.+. ...+ +.+++|++++.+.+.+. + .+.+++++ ..++|+|+-|-.++.+++
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~-~~~~l~~V~~~~~~~~~~~~~~--~~~~~~l~~ll~~~~DlVVE~A~~~av~e 77 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAA-QPCQLAALTRNAADLPPALAGR--VALLDGLPGLLAWRPDLVVEAAGQQAIAE 77 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCC-CceEEEEEecCCHHHHHHhhcc--CcccCCHHHHhhcCCCEEEECCCHHHHHH
Confidence 67899999999999999999865432 2234 45788888888887663 5 67788886 578999999999999999
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
....+
T Consensus 78 ~~~~i 82 (267)
T PRK13301 78 HAEGC 82 (267)
T ss_pred HHHHH
Confidence 88776
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6e-06 Score=68.15 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=64.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeE-EEEcCChh-hhh----hcCc--CCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQI-IASAPSER-FKL----HWPE--PMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e-~~~----~l~~--~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
|||+++|+ |+||+.+++.+.+.. ..++ .+++|++. ... .+.. ..++ ...+.++++..+|+||-.+.|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~---~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p 77 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP---GFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNP 77 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST---TEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC---CcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCCh
Confidence 68999999 999999999999843 1354 46777762 111 1111 2355 678888999899999999988
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
+.+.+.++.. . ..+.-+|..+.|.+.++++.
T Consensus 78 ~~~~~~~~~~-~-----~~g~~~ViGTTG~~~~~~~~ 108 (124)
T PF01113_consen 78 DAVYDNLEYA-L-----KHGVPLVIGTTGFSDEQIDE 108 (124)
T ss_dssp HHHHHHHHHH-H-----HHT-EEEEE-SSSHHHHHHH
T ss_pred HHhHHHHHHH-H-----hCCCCEEEECCCCCHHHHHH
Confidence 8887777655 2 23556666678888655443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=5e-06 Score=78.84 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=67.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.+|++|||+|.+|..++..|...|. +|++++|++++.+...+ +|. . ..+..+.+.++|+||.++|+..+.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga----~V~v~~r~~~~~~~~~~-~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~-- 224 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGA----NVTVGARKSAHLARITE-MGLSPFHLSELAEEVGKIDIIFNTIPALVLT-- 224 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-cCCeeecHHHHHHHhCCCCEEEECCChhhhh--
Confidence 5799999999999999999999884 99999999887666554 565 2 235567788999999999875432
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++. ...+ +++.+||++..
T Consensus 225 -~~~-l~~~--~~g~vIIDla~ 242 (296)
T PRK08306 225 -KEV-LSKM--PPEALIIDLAS 242 (296)
T ss_pred -HHH-HHcC--CCCcEEEEEcc
Confidence 222 3345 67889998764
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-06 Score=81.83 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=66.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc---CCC--c-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE---PMD--F-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~---~~g--~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++||||+|.+|...++.|... .+..+|++|+|++++++.+.+ ++| + .+.+.++++.+||+|+.|+|...
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~--~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~-- 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRV--FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK-- 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC--
Confidence 6899999999999988888663 345799999999999877654 245 3 57889999999999999998642
Q ss_pred HHHHHhhhcccccCCCcEEEEe
Q psy316 139 SAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ +++..|.++
T Consensus 205 P~~~---~~~l--~~g~~v~~v 221 (325)
T TIGR02371 205 PVVK---ADWV--SEGTHINAI 221 (325)
T ss_pred cEec---HHHc--CCCCEEEec
Confidence 3332 1235 678776665
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=80.34 Aligned_cols=102 Identities=24% Similarity=0.298 Sum_probs=75.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~ 139 (341)
..+++||||+|++|+.+++.+..-|. +|.+||+ +++... ...+. ...++++++++||+|.+.+|- ...+.
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm----~v~~~d~~~~~~~~---~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g 213 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGM----KVIGYDPYSPRERA---GVDGVVGVDSLDELLAEADILTLHLPLTPETRG 213 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC----eEEEECCCCchhhh---ccccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence 46899999999999999999999886 9999999 333222 11244 567899999999999999984 45566
Q ss_pred HHH-HhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 140 AIQ-GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 140 vl~-~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
++. +. ...+ +++.++|.++=|- +.+.|.+.+.
T Consensus 214 ~i~~~~-~a~M--K~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 214 LINAEE-LAKM--KPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred ccCHHH-HhhC--CCCeEEEECCCcceecHHHHHHHHH
Confidence 663 22 2345 7888999987553 3456666555
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.5e-06 Score=80.84 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc----C----cCC---CccccChHHHhhcCCEEEEe
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW----P----EPM---DFALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l----~----~~~---g~~~~s~~e~~~~aDvIila 131 (341)
..+++||||+|+||+.+|+.|..-|. +|++|+|+....... . ..+ .....+..+++++||+|+++
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~----~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGV----KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC----EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 45799999999999999999998885 999999973221110 0 000 11345788999999999999
Q ss_pred eCh-HHHHHHHH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 132 MKP-QYLDSAIQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 132 V~~-~~v~~vl~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+|- ...+.++. +. ...+ +++.++|++.-| ++.+.|.+.+.
T Consensus 234 lPlt~~T~~li~~~~-l~~M--k~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 234 CTLTKETAGIVNDEF-LSSM--KKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCCChHhhcccCHHH-HhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 984 34444542 23 3446 789999998755 33456666665
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.2e-05 Score=66.87 Aligned_cols=204 Identities=11% Similarity=0.006 Sum_probs=117.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+.++|||.|++|.+....-.+.+. .. .+..|++.+++.|.+.++..-.+.+...+-.+++|.-+|...+..+..
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~----~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~~s~vaa 85 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVV----ACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDALYSGVAA 85 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchhe----eehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHHHHHHHH
Confidence 3679999999999984433333221 22 356789999888887554422233344455688888888886666664
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh-----h--cCceEEEEeCCCCCccHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK-----Y--GKGITGMCHDVHLDKESE 215 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-----v--~~g~~~l~~~~~~~~~~~ 215 (341)
.. . . ++++++++|++--+.+.+...-. .++- -..++|+...+ . -.+. ++. .-..++ -
T Consensus 86 ~~-~--~--rpg~iv~HcSga~~~~il~~~gr------~g~~-~asiHP~f~Fsgl~edl~rl~d~-~~~-i~eaD~--~ 149 (289)
T COG5495 86 TS-L--N--RPGTIVAHCSGANGSGILAPLGR------QGCI-PASIHPAFSFSGLDEDLSRLKDT-IFG-ITEADD--V 149 (289)
T ss_pred hc-c--c--CCCeEEEEccCCCchhhhhhhhh------cCCc-ceeecccccccCCHHHHHhCccc-EEE-eecccc--c
Confidence 43 2 3 68999999976555665554322 2333 34566653211 1 1121 111 112223 4
Q ss_pred HHHHHHHHHHhcCCe-EEcCCC---chhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 216 HLNMAIKIMEQGGIV-EIIPES---MMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 216 ~~~~v~~ll~~lG~~-~~v~e~---~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.+..++.|...+|.. +.+.++ .++....++++. .+..+.+++ +.-...|+|+-+..--+...+.|+....++
T Consensus 150 g~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf--~v~~l~~a~-~i~~aag~Dq~e~iv~~~pL~~g~~~n~~q 225 (289)
T COG5495 150 GYAIVQSLALEMGGEPFCVREEARILYHAAAVHASNF--IVTVLADAL-EIYRAAGDDQPELIVEVGPLARGALENTLQ 225 (289)
T ss_pred ccHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhcc--HHHHHHHHH-HHHHHhcCCCcceeeeehHHHHHHHHHHHH
Confidence 567889999999875 445443 445555555432 222222222 222467888655443345577888777766
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-06 Score=81.94 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-----HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-----YLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-----~v~ 138 (341)
.++|||||+|+||+.+++.+...|. +|.+||+..... . .+....+.++++++||+|++++|-. ...
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~----~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~ 186 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGW----KVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPTR 186 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCC----EEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence 4789999999999999999999885 999999853321 1 1123457889999999999999842 233
Q ss_pred HHH-HHhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 139 SAI-QGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 139 ~vl-~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
.++ .+. ...+ +++.++|+++-|-- .+.|.+.+.
T Consensus 187 ~li~~~~-l~~m--k~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 187 HLLDEAF-LASL--RPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred ccCCHHH-HhcC--CCCeEEEECCCCcccCHHHHHHHHH
Confidence 344 222 3345 78999999876643 455555553
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.5e-06 Score=77.74 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=72.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..+++||||+|++|+++|+.+..-| -+|..|+|++. ....++.+....+..+++++||+|.+.+|. ..-..++
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~Fg----m~v~y~~~~~~--~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLi 218 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGFG----MKVLYYDRSPN--PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLI 218 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCC----CEEEEECCCCC--hHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhc
Confidence 4689999999999999999988444 48999999864 222222345223489999999999999995 4455555
Q ss_pred H-HhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
. +. ...+ +++.++|.+.=|- +.+.+.+.+.
T Consensus 219 n~~~-l~~m--k~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 219 NAEE-LAKM--KPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred CHHH-HHhC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 2 22 2345 7888999887553 3455555554
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.8e-06 Score=72.77 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh-cCCEEEEeeChHHH-HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK-EAEYVFLAMKPQYL-DSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~-~aDvIilaV~~~~v-~~v 140 (341)
.++|+|+|+|+||..+++.|.+.|+ +|+++|+++++++.+.++++. .. +..++.. ++|+++.|.....+ .+.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~----~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~~~~I~~~~ 102 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGA----KLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCALGGVINDDT 102 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEecccccccCHHH
Confidence 3789999999999999999999995 999999999988887775666 33 3345544 89999977554322 233
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCH-HHHHHhcc
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLS 174 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~ 174 (341)
++++ + .++|+.-.++-.. ..-.+.|.
T Consensus 103 ~~~l-------~-~~~v~~~AN~~~~~~~~~~~L~ 129 (200)
T cd01075 103 IPQL-------K-AKAIAGAANNQLADPRHGQMLH 129 (200)
T ss_pred HHHc-------C-CCEEEECCcCccCCHhHHHHHH
Confidence 3433 3 4577776665333 33334443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.6e-06 Score=79.52 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-----HH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-----LD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-----v~ 138 (341)
.++|||||+|+||+.+++.|..-|. +|.+||+.... . . ......+.++++++||+|++.+|-.. ..
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~----~V~~~dp~~~~--~--~-~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGI----KTLLCDPPRAD--R--G-DEGDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCcccc--c--c-cccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 4799999999999999999998885 99999974321 1 1 11234578999999999999998321 22
Q ss_pred HHH-HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 139 SAI-QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 139 ~vl-~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.++ ++. ...+ +++.++|+++=| ++.+.|.+.+.
T Consensus 187 ~li~~~~-l~~m--k~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 187 HLADEKL-IRSL--KPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred cccCHHH-HhcC--CCCcEEEECCCchhcCHHHHHHHHH
Confidence 333 222 3345 789999998755 33456655554
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.8e-06 Score=77.35 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC----cC---CC--c--c-ccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP----EP---MD--F--A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~----~~---~g--~--~-~~s~~e~~~~aDvIilaV 132 (341)
+||+|||+|.||..++..+...|+ . +|.++|+++++++... .. .+ . . ..+. +.+++||+||+++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~--~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL--G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 799999999999999999998874 2 8999999876654211 10 01 1 1 2343 5689999999996
Q ss_pred --Ch--------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 --KP--------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 --~~--------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|. ..++++++++ .++. ++.++|..++.++.
T Consensus 79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i-~~~~---~~~~viv~tNP~d~ 124 (307)
T PRK06223 79 GVPRKPGMSRDDLLGINAKIMKDVAEGI-KKYA---PDAIVIVVTNPVDA 124 (307)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecCcHHH
Confidence 22 2356666777 6654 55666666666553
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=77.03 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=72.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
+..+++||||+|++|+.+|+.+..-|. +|..|+|+.... . .++...+.++++++||+|++++|- ...+.+
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fgm----~V~~~d~~~~~~----~-~~~~~~~l~ell~~sDvv~lh~Plt~~T~~l 213 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFGA----KVVYYSTSGKNK----N-EEYERVSLEELLKTSDIISIHAPLNEKTKNL 213 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcCC----EEEEECCCcccc----c-cCceeecHHHHhhcCCEEEEeCCCCchhhcc
Confidence 346899999999999999999877674 899999864221 1 233344789999999999999994 344444
Q ss_pred HH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+. +. -..+ +++.++|+++=| ++.+.|.+.|.
T Consensus 214 i~~~~-~~~M--k~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 214 IAYKE-LKLL--KDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred cCHHH-HHhC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 42 22 2345 789999998755 34566666665
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.3e-06 Score=83.20 Aligned_cols=95 Identities=22% Similarity=0.356 Sum_probs=68.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c-----cccChHHHhhcCCEEEEeeC---h
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F-----ALNDNHRIIKEAEYVFLAMK---P 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~-----~~~s~~e~~~~aDvIilaV~---~ 134 (341)
.++|+|||+|.||..++++|...|. .+|++++|++++++.+.++++ . ...+..+.+.++|+||.|++ |
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~---~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC---TKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 4689999999999999999999884 579999999999988876552 2 23456677889999999985 3
Q ss_pred HHHHHHHHHhhhcccc-cCCCcEEEEecC
Q psy316 135 QYLDSAIQGLVNDKVT-LNSSRCIISMLV 162 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~-~~~~~iIVs~~a 162 (341)
-...+.++.+ .+.-. .....++|+++-
T Consensus 343 vI~~e~l~~~-~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 343 LFLKEHVEAL-PPASDTVGGKRLFVDISV 370 (519)
T ss_pred eeCHHHHHHh-hhcccccCCCeEEEEeCC
Confidence 3345566555 32100 012247888743
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=76.65 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=75.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
++.++|||+|+|++|+.+|++|..-| ..|.-+.|++...+...+ ++....+..+.+.++|+|++|+|- .....+
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg----~~i~y~~r~~~~~~~~~~-~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~l 234 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFG----CVILYHSRTQLPPEEAYE-YYAEFVDIEELLANSDVIVVNCPLTKETRHL 234 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhcc----ceeeeecccCCchhhHHH-hcccccCHHHHHhhCCEEEEecCCCHHHHHH
Confidence 46789999999999999999998855 356677776655444333 333345778999999999999995 456666
Q ss_pred H-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+ +++ -..+ +++.+||++.=|- ..+.+.+.+.
T Consensus 235 iNk~~-~~~m--k~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 235 INKKF-IEKM--KDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred hhHHH-HHhc--CCCeEEEeccccccccHHHHHHHHh
Confidence 6 334 4456 7888999987553 3455666665
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=76.95 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=72.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDS 139 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~ 139 (341)
...+++||||+|++|+.+++.+. .-|. +|..++|.... +.. .++++...+.++++++||+|++++|- ...+.
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm----~V~~~~~~~~~-~~~-~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~ 216 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNM----PILYNARRHHK-EAE-ERFNARYCDLDTLLQESDFVCIILPLTDETHH 216 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCC----EEEEECCCCch-hhH-HhcCcEecCHHHHHHhCCEEEEeCCCChHHhh
Confidence 34689999999999999999886 5553 88889986321 111 12455334889999999999999984 34455
Q ss_pred HHH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 140 AIQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 140 vl~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
++. +. ...+ +++.++|+++=| ++.+.|.+.+.
T Consensus 217 li~~~~-l~~m--k~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 217 LFGAEQ-FAKM--KSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred ccCHHH-HhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 552 22 3345 789999998755 33566666665
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-05 Score=78.58 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=73.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..+++||||+|++|+.+|+.+..-|. +|..|+|++... . .++ ...+.++++++||+|.+++|- ...+.+
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm----~V~~~d~~~~~~----~-~~~~~~~~l~ell~~sDiVslh~Plt~~T~~l 220 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGM----RVYFYDIEDKLP----L-GNARQVGSLEELLAQSDVVSLHVPETPSTKNM 220 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEECCCcccc----c-CCceecCCHHHHHhhCCEEEEcCCCChHHhhc
Confidence 45899999999999999999988885 999999864321 1 133 445889999999999999994 445555
Q ss_pred HH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+. +. ...+ +++.++|+++-| ++.+.|.+.+.
T Consensus 221 i~~~~-l~~m--k~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 221 IGAEE-LALM--KPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred cCHHH-HhcC--CCCeEEEECCCCcccCHHHHHHHHH
Confidence 52 23 3446 789999998755 33456666554
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=65.66 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=60.2
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCC-c--c---ccChHHH-hhcCCEEEEeeChHH
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMD-F--A---LNDNHRI-IKEAEYVFLAMKPQY 136 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g-~--~---~~s~~e~-~~~aDvIilaV~~~~ 136 (341)
||+|||+ |.+|..++..|.++.. .++. ++.|+.++.+.+...++ + . ..+..+. ..++|+||+|+|+..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~---~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~ 77 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD---FEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV 77 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC---ceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH
Confidence 6999995 9999999999988521 2554 44655433333322221 1 0 0111111 248999999999998
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
..+++..+ .+.+ .+++++|++.+..
T Consensus 78 ~~~~~~~~-~~~~--~~g~~viD~s~~~ 102 (122)
T smart00859 78 SKEIAPLL-PKAA--EAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHH-Hhhh--cCCCEEEECCccc
Confidence 88887666 5556 6899999986654
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-05 Score=76.34 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=66.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------Cc-cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------DF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
+||+|||+|.+|++++..|+..|. .++|.++||++++++.+..++ .. ......+.+.+||+||+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~--~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGI--ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 489999999999999999999884 358999999988877655432 11 222334568899999999842
Q ss_pred ----H------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 ----Q------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 ----~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. .++++.+.+ .++ .++.+|+..++.++
T Consensus 79 ~~~~g~~R~dll~~N~~i~~~~~~~i-~~~---~~~~~vivvsNP~d 121 (306)
T cd05291 79 PQKPGETRLDLLEKNAKIMKSIVPKI-KAS---GFDGIFLVASNPVD 121 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEecChHH
Confidence 1 134444555 544 35667776766554
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.6e-05 Score=75.07 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=56.7
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
.++|+|||.| .||..|+..|+++|. +|++|+|... ++.+++++||+||.|++. ..+.+..
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~ga----tVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~ 220 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHC----SVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW 220 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC----EEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh
Confidence 5899999996 999999999999984 9999987521 567888999999999964 4443332
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
+ +++.+||++
T Consensus 221 -------i--k~GaiVIDv 230 (301)
T PRK14194 221 -------L--KPGAVVIDV 230 (301)
T ss_pred -------c--cCCcEEEEe
Confidence 4 788899987
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=68.11 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=64.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------Cc-cccChHHHhhcCCEEEEee-
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------DF-ALNDNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDvIilaV- 132 (341)
|||+|||+ |++|+.++..|...++ ..++.++|+++++++....++ .. ...+..+.+++||+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 69999999 9999999999999886 458999999977665433221 12 3335567789999999986
Q ss_pred ---ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 ---KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ---~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+|. .++++.+.+ ..+ .++.+++-.++.++
T Consensus 79 ~~~~~g~sR~~ll~~N~~i~~~~~~~i-~~~---~p~~~vivvtNPvd 122 (141)
T PF00056_consen 79 VPRKPGMSRLDLLEANAKIVKEIAKKI-AKY---APDAIVIVVTNPVD 122 (141)
T ss_dssp TSSSTTSSHHHHHHHHHHHHHHHHHHH-HHH---STTSEEEE-SSSHH
T ss_pred ccccccccHHHHHHHhHhHHHHHHHHH-HHh---CCccEEEEeCCcHH
Confidence 221 123333444 443 46667776767655
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.6e-06 Score=81.02 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=58.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c---cccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F---ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~---~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.+||.|||+|.||..++.+|...|. .+|++++|+.++++.+.++++ . ...+..+.+.++|+||.|++..
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~---~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAP---KQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence 4689999999999999999999884 589999999999999888765 3 2345567788999999999743
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.3e-05 Score=76.38 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=65.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc--cccChHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF--ALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~--~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++++|||+|.+|...+..+.... +..+|.+|+|++++++.+.+++ ++ ...+.++++.++|+|+.|+|... .
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~--~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--P 201 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGL--PVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--P 201 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--c
Confidence 68999999999999999997632 2368999999999988876654 33 34677888999999999999763 3
Q ss_pred HHHHhhhcccccCCCcEEEEe
Q psy316 140 AIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~ 160 (341)
++. ..+ ++++.|..+
T Consensus 202 l~~----~~~--~~g~hi~~i 216 (304)
T PRK07340 202 VYP----EAA--RAGRLVVAV 216 (304)
T ss_pred eeC----ccC--CCCCEEEec
Confidence 332 235 678766655
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.4e-05 Score=74.82 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=70.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..+++||||+|++|+.+++.+..-|. +|..|+|.... .. .....+.++++.+||+|++++|- ...+.++
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~----~V~~~~~~~~~--~~----~~~~~~l~ell~~sDiv~l~~Plt~~T~~li 215 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM----KVLYAEHKGAS--VC----REGYTPFEEVLKQADIVTLHCPLTETTQNLI 215 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC----EEEEECCCccc--cc----ccccCCHHHHHHhCCEEEEcCCCChHHhccc
Confidence 45899999999999999999877774 89999875321 11 11234788999999999999993 4445555
Q ss_pred H-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
. +. ...+ +++.++|++.=| ++.+.|.+.+.
T Consensus 216 ~~~~-l~~m--k~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 216 NAET-LALM--KPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred CHHH-HHhC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 2 22 3345 789999998755 34566766665
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.7e-05 Score=75.47 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhh-hhhcCcCCC------------c-cccChHHHhhcCCE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERF-KLHWPEPMD------------F-ALNDNHRIIKEAEY 127 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~-~~~l~~~~g------------~-~~~s~~e~~~~aDv 127 (341)
..++|||||+|++|+.+|+.+. .-|. +|..|+|++.. .+.....++ . ...+.++++++||+
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm----~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDi 239 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADV 239 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC----EEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCE
Confidence 4579999999999999999885 4453 89999987532 111111111 1 23578999999999
Q ss_pred EEEeeCh-HHHHHHHH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 128 VFLAMKP-QYLDSAIQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 128 IilaV~~-~~v~~vl~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
|++++|- ...+.++. +. ...+ +++.++|.+.=| ++.+.|.+.+.
T Consensus 240 V~lh~Plt~~T~~lin~~~-l~~M--K~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 240 ISLHPVLDKTTYHLINKER-LALM--KKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred EEEeCCCChhhhhhcCHHH-HHhC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 9999984 44555552 22 3346 789999998755 33456666554
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-05 Score=80.26 Aligned_cols=68 Identities=25% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~ 134 (341)
.++|+|||+|.||..+++.|...|. .+|++++|++++++.+++++|. ...+..+.+..+|+||.|++.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~---~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGV---RKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA 252 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCC---CeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC
Confidence 4789999999999999999998884 5899999999998877776664 234556678899999999974
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.6e-05 Score=63.91 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=60.7
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCC-------c-cccChHHHhhcCCEEEEeeChH
Q psy316 66 KVGFIG-AGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMD-------F-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 66 kIgiIG-~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g-------~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
||+||| +|.+|+.+.+.|.++- ..+ +.++.++...-+.+...++ . ......+.+.++|+||+|+|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp---~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP---DFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS---TEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCC---CccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh
Confidence 799999 8999999999998843 234 4566666522223322221 1 1222345568999999999999
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
...+....+ + .++..||++++..
T Consensus 78 ~~~~~~~~~----~--~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 78 ASKELAPKL----L--KAGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHHH----H--HTTSEEEESSSTT
T ss_pred HHHHHHHHH----h--hCCcEEEeCCHHH
Confidence 888888766 3 4677899886643
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.9e-05 Score=73.05 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=64.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh-h---cCc-----CCC--c-cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL-H---WPE-----PMD--F-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~-~---l~~-----~~g--~-~~~s~~e~~~~aDvIilaV 132 (341)
|||+|||+|.||..+|..+...|+ .+|.++|++++..+ . +.+ ... + .+.+.++ +++||+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~---~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL---ADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC---CeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 689999999999999999998884 26999998655333 1 111 011 2 2345544 78999999998
Q ss_pred C----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 K----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ~----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
. + +.++++++++ .++. ++.+||..++.++.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I-~~~~---p~~~iIv~tNP~di 123 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRI-MEHS---PNPIIVVVSNPLDA 123 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecCcHHH
Confidence 5 1 2245556666 6554 56677878787664
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.3e-05 Score=75.32 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=64.5
Q ss_pred CeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhhcCcCC----Cc---cccChHHHhhcCCEEEEeeChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLHWPEPM----DF---ALNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~l~~~~----g~---~~~s~~e~~~~aDvIilaV~~~~ 136 (341)
.+++|||+|.+|...+..|.. .+. .+|++|+|++++++.+.+++ |+ ...+.++++.++|+|+.|+|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i---~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDI---RSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCc---cEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 589999999999999999974 332 58999999999988776532 54 35678888999999999998643
Q ss_pred HHHHHHHhhhcccccCCCcEEEEe
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++.. ..+ +++..|..+
T Consensus 207 --p~i~~---~~l--~~g~~i~~v 223 (326)
T TIGR02992 207 --PILHA---EWL--EPGQHVTAM 223 (326)
T ss_pred --cEecH---HHc--CCCcEEEee
Confidence 33321 135 677666654
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.5e-05 Score=73.77 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=71.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
+..+++||||+|++|+.+|+.+..-|. +|..|+|.... . .....+.++++++||+|++++|- ...+.+
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm----~V~~~~~~~~~-~------~~~~~~l~ell~~sDiv~l~lPlt~~T~~l 214 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGM----RVLIGQLPGRP-A------RPDRLPLDELLPQVDALTLHCPLTEHTRHL 214 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCC----EEEEECCCCCc-c------cccccCHHHHHHhCCEEEECCCCChHHhcC
Confidence 346899999999999999999987774 89999986321 1 12223788999999999999994 445555
Q ss_pred HH-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+. +. -..+ +++.++|++.=| ++.+.|.+.+.
T Consensus 215 i~~~~-~~~m--k~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 215 IGARE-LALM--KPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred cCHHH-HhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 52 22 3345 789999998755 33456666665
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.5e-05 Score=74.98 Aligned_cols=86 Identities=12% Similarity=0.189 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc---cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF---ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~---~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.+++|||+|.+|...+..+.... +..+|.+|+|++++++.+.++ +++ .+.+.++++.++|+|+.|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~- 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR--DIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT- 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC--CccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC-
Confidence 68999999999999998876431 236899999999998877652 344 45677888999999999998653
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++.+ .+ ++|+.|+++
T Consensus 205 -p~i~~----~l--~~G~hV~~i 220 (325)
T PRK08618 205 -PVFSE----KL--KKGVHINAV 220 (325)
T ss_pred -cchHH----hc--CCCcEEEec
Confidence 33322 24 678777766
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.7e-05 Score=66.07 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=58.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHH--HHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYL--DSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v--~~vl 141 (341)
.+++.++|+|..|+.+|+.|...|. +|+|++++|-++-+... .|..+.+.++++..+|++|.++-...+ .+-+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga----~V~V~e~DPi~alqA~~-dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~ 97 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGA----RVTVTEIDPIRALQAAM-DGFEVMTLEEALRDADIFVTATGNKDVITGEHF 97 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-----EEEEE-SSHHHHHHHHH-TT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCC----EEEEEECChHHHHHhhh-cCcEecCHHHHHhhCCEEEECCCCccccCHHHH
Confidence 3689999999999999999999995 99999999987655544 277444678999999999999976542 3444
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
.++ +++.++.+.
T Consensus 98 ~~m-------kdgail~n~ 109 (162)
T PF00670_consen 98 RQM-------KDGAILANA 109 (162)
T ss_dssp HHS--------TTEEEEES
T ss_pred HHh-------cCCeEEecc
Confidence 444 567666654
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=4e-05 Score=73.36 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=60.7
Q ss_pred CCCeEEEEcccHHH-HHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhc--CCEEEEeeChHHH
Q psy316 63 MWTKVGFIGAGNMA-QAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKE--AEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~G~mG-~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~--aDvIilaV~~~~v 137 (341)
+++||||||+|.++ ...+..+.+.+.. ..-+.+++|++++++.+.+++|+ .++|.++++++ .|+|++|+|+..-
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 46799999999666 4577777776520 13467899999999999988887 67788898875 5999999998765
Q ss_pred HHHH
Q psy316 138 DSAI 141 (341)
Q Consensus 138 ~~vl 141 (341)
.++.
T Consensus 81 ~e~~ 84 (342)
T COG0673 81 AELA 84 (342)
T ss_pred HHHH
Confidence 5555
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.1e-05 Score=70.85 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=51.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCC--hhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPS--ERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~--~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+||||||+|+||+.+++.|.+... .++ .++++. .++...... .++ .+.+.+++..+.|+|+.|+++..+.+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~---~~l~~v~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPD---LRVDWVIVPEHSIDAVRRALG-EAVRVVSSVDALPQRPDLVVECAGHAALKEH 77 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCC---ceEEEEEEcCCCHHHHhhhhc-cCCeeeCCHHHhccCCCEEEECCCHHHHHHH
Confidence 699999999999999999887531 233 344442 222222211 145 566777664569999999999887777
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
....
T Consensus 78 ~~~a 81 (265)
T PRK13303 78 VVPI 81 (265)
T ss_pred HHHH
Confidence 6655
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=78.37 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=56.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~ 134 (341)
..+++|||+|.||..+++.|...|. .+|++++|++++++.+.+++|. ...+..+.+..+|+||.|++.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~---~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s 250 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGV---GKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA 250 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC
Confidence 4789999999999999999999884 5899999999988777665554 234566778899999999963
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.7e-05 Score=69.30 Aligned_cols=98 Identities=12% Similarity=0.164 Sum_probs=64.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeE-EEEcCC-hhhh----hhcCc--CCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQI-IASAPS-ERFK----LHWPE--PMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V-~v~~r~-~e~~----~~l~~--~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
+||+|+| +|+||..+++.+.+.. ..++ .+++|. ++.. ..+.. ..|+ .+.+.+++...+|+||.+++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~---~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE---GLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC---CCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence 6999999 6999999999988642 1244 567853 2221 11111 1345 566777765579999999999
Q ss_pred HHHHHHHHHhhhcccccCCCc-EEEEecCCCCHHHHHHh
Q psy316 135 QYLDSAIQGLVNDKVTLNSSR-CIISMLVGVDLETLKKK 172 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~-iIVs~~agi~~~~l~~~ 172 (341)
....+.+... + ..++ +|+.. .|.+.++.+++
T Consensus 79 ~~~~~~~~~a----l--~~g~~vVigt-tg~~~e~~~~l 110 (266)
T TIGR00036 79 EGVLNHLKFA----L--EHGVRLVVGT-TGFSEEDKQEL 110 (266)
T ss_pred HHHHHHHHHH----H--HCCCCEEEEC-CCCCHHHHHHH
Confidence 9888877665 2 3333 55544 58887665544
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5e-05 Score=74.15 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=61.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--Cc--------cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--DF--------ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--g~--------~~~s~~e~~~~aDvIilaV~ 133 (341)
+|||.|||+|.+|+.++..|.++|- .+|++.+|++++++++.+.. .+ ......+++++.|+||-|.|
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d---~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD---GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 4789999999999999999999983 69999999999988876532 11 12234577889999999999
Q ss_pred hHHHHHHHHH
Q psy316 134 PQYLDSAIQG 143 (341)
Q Consensus 134 ~~~v~~vl~~ 143 (341)
+..-..+++.
T Consensus 78 ~~~~~~i~ka 87 (389)
T COG1748 78 PFVDLTILKA 87 (389)
T ss_pred chhhHHHHHH
Confidence 8876666644
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.4e-05 Score=72.56 Aligned_cols=94 Identities=16% Similarity=0.284 Sum_probs=65.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh--c-----CcCCC--c--c-ccChHHHhhcCCEEEEe
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH--W-----PEPMD--F--A-LNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~--l-----~~~~g--~--~-~~s~~e~~~~aDvIila 131 (341)
.+||+|||+|+||..++..+...|+ .+|.++|+++++++. + ....+ . . ..+. +.+++||+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~---~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNL---GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC---CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEEC
Confidence 4699999999999999999888884 479999998765432 1 11012 1 2 2343 478999999999
Q ss_pred e--C--h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 M--K--P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V--~--~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. + + ..++++.+.+ .++. ++.+++-.++.++
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i-~~~~---p~a~vivvsNP~d 126 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESV-KKYC---PNAFVICVTNPLD 126 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecChHH
Confidence 8 2 3 3456677777 6654 6666666667654
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.4e-05 Score=74.64 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=65.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HH-HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LD-SAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~-~vl 141 (341)
.++++|||+|.+|..+++.+...|. +|+++++++.+...... .|+...+..++++.+|+|++++.... +. +.+
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga----~ViV~e~dp~~a~~A~~-~G~~~~~leell~~ADIVI~atGt~~iI~~e~~ 328 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGA----RVVVTEIDPICALQAAM-EGYQVVTLEDVVETADIFVTATGNKDIITLEHM 328 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCchhHHHHHh-cCceeccHHHHHhcCCEEEECCCcccccCHHHH
Confidence 4789999999999999999998884 89999998876644333 36633467888999999999985433 21 233
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
. .+ +++.+|+++.-+
T Consensus 329 ~-----~M--KpGAiLINvGr~ 343 (476)
T PTZ00075 329 R-----RM--KNNAIVGNIGHF 343 (476)
T ss_pred h-----cc--CCCcEEEEcCCC
Confidence 3 34 778888887444
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=5e-05 Score=72.17 Aligned_cols=87 Identities=9% Similarity=0.146 Sum_probs=66.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc---cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF---ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~---~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.+++|||+|..|...++.+... .+-.+|.+|+|++++++++.++ +|+ .+.+.++++.+||||+.|++...
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v--~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~- 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV--YNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT- 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-
Confidence 6899999999999999988874 3557999999999998876543 353 56789999999999999998653
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ +++..|..+
T Consensus 195 -P~~~---~~~l--~pg~hV~ai 211 (301)
T PRK06407 195 -PIFN---RKYL--GDEYHVNLA 211 (301)
T ss_pred -cEec---HHHc--CCCceEEec
Confidence 4442 2245 677555544
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.7e-05 Score=70.44 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=49.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcCC----Cc-cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEPM----DF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~~----g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+|.+|.+++..|...|. .++|.++|+++++++. +.... .. ...+..+.+++||+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~--~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL--ASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccC
Confidence 589999999999999999999884 3589999999876653 22110 11 12233466899999999985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.9e-05 Score=72.59 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=56.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc---cccChHHHhhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF---ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~---~~~s~~e~~~~aDvIilaV~~~ 135 (341)
++++|||+|.+|.+.+..|.... +..+|++|+|++++++.+.++ +|+ ...+.++++.++|+|+.|+|..
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~--~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR--PIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC--CCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 68999999999999999987532 126899999999998887653 344 3577788899999999999865
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.1e-05 Score=72.90 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=64.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc---cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF---ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~---~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.+++|||+|.+|...++.+.... +-..|.+|+|++++++++.++ ++. ...+.++++. +|+|+.|+|...
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~- 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVF--DLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK- 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC-
Confidence 68999999999999999987542 346899999999988876653 243 4567788886 999999999753
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ ++++.|.++
T Consensus 206 -P~~~---~~~l--~~g~hV~~i 222 (326)
T PRK06046 206 -PVVK---AEWI--KEGTHINAI 222 (326)
T ss_pred -cEec---HHHc--CCCCEEEec
Confidence 4432 2235 678776665
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=70.10 Aligned_cols=93 Identities=16% Similarity=0.273 Sum_probs=62.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh--hc-----CcCCC--c--c-ccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL--HW-----PEPMD--F--A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~--~l-----~~~~g--~--~-~~s~~e~~~~aDvIilaV 132 (341)
+||+|||+|+||..++..+...|+ .+|.++|++++.++ .+ ....+ . . +.+. +.+++||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl---~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNL---GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC---CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 699999999999999999988885 36999999887542 11 01012 2 2 3444 6789999999976
Q ss_pred C----h-----------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 K----P-----------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ~----~-----------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
- + ..+.++++++ .++. ++.+++..++..+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i-~~~~---p~a~~iv~sNP~d 132 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGI-KKYC---PNAFVIVITNPLD 132 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecCcHH
Confidence 1 1 1245555666 5554 5546666666655
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.3e-05 Score=71.93 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=66.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CCc---cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MDF---ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g~---~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.+++|||+|..|...++.+... .+..+|++|+|++++++++.+. .++ .+.+.++++.+||||+.|++...
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v--~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~-- 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNV--TDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE-- 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC--
Confidence 6899999999999999988764 3567999999999998876542 244 46788999999999999998653
Q ss_pred HHHHHhhhcccccCCCcEEEEe
Q psy316 139 SAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.+++. ..+ +++..|..+
T Consensus 205 P~~~~---~~l--~~G~hi~~i 221 (315)
T PRK06823 205 PLLQA---EDI--QPGTHITAV 221 (315)
T ss_pred ceeCH---HHc--CCCcEEEec
Confidence 44421 235 778777765
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=69.60 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=55.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEc-CChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASA-PSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~-r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
.++|+||| .|.||..|+..|+++|+ +|++|+ |++ ++++++++||+||.|++. ..+.++
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~----tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~ 218 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANA----TVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGD 218 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCC----EEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchh
Confidence 58999999 99999999999999984 999995 653 346778899999999975 433322
Q ss_pred HHHhhhcccccCCCcEEEEe
Q psy316 141 IQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~ 160 (341)
.+ ++|.+||++
T Consensus 219 -------~l--k~GavVIDv 229 (296)
T PRK14188 219 -------WI--KPGATVIDV 229 (296)
T ss_pred -------ee--cCCCEEEEc
Confidence 25 788999987
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00023 Score=64.81 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=58.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-cCcCCCc--c--ccChHH----H-hhcCCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-WPEPMDF--A--LNDNHR----I-IKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-l~~~~g~--~--~~s~~e----~-~~~aDvIilaV~~ 134 (341)
|+|.|||+|.+|..+|+.|.+.|+ +|.+.++++++.++ +..++.. . ..+..+ + +.++|+++.++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~----~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH----NVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC----ceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 689999999999999999999994 99999999999887 4433443 1 112222 2 5689999999998
Q ss_pred HHHHHHHHHh
Q psy316 135 QYLDSAIQGL 144 (341)
Q Consensus 135 ~~v~~vl~~i 144 (341)
+....++-.+
T Consensus 77 d~~N~i~~~l 86 (225)
T COG0569 77 DEVNSVLALL 86 (225)
T ss_pred CHHHHHHHHH
Confidence 7777777655
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.6e-05 Score=73.55 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=51.2
Q ss_pred CeEEEEcccHHHHHHHH--HHHhc-CCCCCCeEEEEcCChhhhhhcCcC-------CC----c-cccChHHHhhcCCEEE
Q psy316 65 TKVGFIGAGNMAQAVAT--SLIRT-GLCIPAQIIASAPSERFKLHWPEP-------MD----F-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~--~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~-------~g----~-~~~s~~e~~~~aDvIi 129 (341)
+||+|||+|.||.+++. .++.. . .+.++|.+||+++++++..... .+ + .++|..+++++||+||
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~-~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi 79 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE-LSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVI 79 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC-CCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEE
Confidence 58999999999998665 55433 2 3446999999999887754321 11 2 4567788999999999
Q ss_pred EeeCh
Q psy316 130 LAMKP 134 (341)
Q Consensus 130 laV~~ 134 (341)
.+++.
T Consensus 80 ~ai~~ 84 (423)
T cd05297 80 NTIQV 84 (423)
T ss_pred EeeEe
Confidence 99985
|
linked to 3D####ucture |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=70.08 Aligned_cols=66 Identities=12% Similarity=0.229 Sum_probs=48.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCCh-hhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSE-RFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~-e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
++||+|||+|+||..+++.+.++. .-++ .+++|++ +++. +..++ ...+..+.+.+.|+|++|+|+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~p---d~ELVgV~dr~~~~~~~---~~~~v~~~~d~~e~l~~iDVViIctPs~ 71 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQP---DMELVGVFSRRGAETLD---TETPVYAVADDEKHLDDVDVLILCMGSA 71 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCC---CcEEEEEEcCCcHHHHh---hcCCccccCCHHHhccCCCEEEEcCCCc
Confidence 369999999999999999998752 1255 4789985 4433 22455 4456666778899999999853
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.3e-05 Score=73.26 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---C--c-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---D--F-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g--~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.+++|||+|..|...++.+..- .+-.+|++|+|++++++.+.+++ + + .+.+.++++.+||||+.|++...-.
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~v--r~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~ 207 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKAL--LGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNA 207 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHh--CCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCC
Confidence 5799999999999998888764 24579999999999988765432 3 3 5678999999999999999754322
Q ss_pred HHHHHhhhcccccCCCcEEEEe
Q psy316 139 SAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.+++. ..+ ++|..|..+
T Consensus 208 Pvl~~---~~l--kpG~hV~aI 224 (346)
T PRK07589 208 TILTD---DMV--EPGMHINAV 224 (346)
T ss_pred ceecH---HHc--CCCcEEEec
Confidence 44432 235 677665544
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=71.12 Aligned_cols=102 Identities=23% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCC-------CccccChH-HHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPM-------DFALNDNH-RIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~-------g~~~~s~~-e~~~~aDvIilaV 132 (341)
|++||+|||+ |.+|..+++.|.++. ..++. +++|. +..+.+.+.+ +....+.. ....++|+||+|+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p---~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHP---EVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCC---CceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 5689999997 999999999998753 24654 55543 2222222211 11122222 2456799999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhcc
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLS 174 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~ 174 (341)
|.....++...+ + ..++.||+.++..-. +..+++.+
T Consensus 77 P~~~~~~~v~~a----~--~aG~~VID~S~~fR~~~~~~~~~~y~ 115 (343)
T PRK00436 77 PHGVSMDLAPQL----L--EAGVKVIDLSADFRLKDPEVYEKWYG 115 (343)
T ss_pred CcHHHHHHHHHH----H--hCCCEEEECCcccCCCCchhhHHhcC
Confidence 998888887766 3 467899999876644 33445554
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=68.54 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhh-hcCcCCCc-c-ccChHHHhh-----cCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKL-HWPEPMDF-A-LNDNHRIIK-----EAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~-~l~~~~g~-~-~~s~~e~~~-----~aDvIilaV~~ 134 (341)
++||||||+|++|+.++..+.+... .++ .++++++++.. +.++++|+ . ..+.++++. +.|+||++++.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~---velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a 80 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEH---LEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSA 80 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCC---cEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCH
Confidence 4789999999999998888876432 344 57888876422 33445787 4 467777774 58899999999
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
....+..... . ..|+.+|+.
T Consensus 81 ~~H~e~a~~a-~-----eaGk~VID~ 100 (302)
T PRK08300 81 GAHVRHAAKL-R-----EAGIRAIDL 100 (302)
T ss_pred HHHHHHHHHH-H-----HcCCeEEEC
Confidence 8777766554 2 345666654
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=70.33 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=67.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC----cCCC--c-cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP----EPMD--F-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~----~~~g--~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
..++|||+|..+...++.+..- ++..+|.+|+|++++++++. ++++ + .+.|.++++..||+|+.|+|...
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v--~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAV--RDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhh--CCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC-
Confidence 4799999999999999988764 45678999999999888765 3344 3 67788999999999999999775
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ +++..|..+
T Consensus 208 -Pil~---~~~l--~~G~hI~ai 224 (330)
T COG2423 208 -PVLK---AEWL--KPGTHINAI 224 (330)
T ss_pred -Ceec---Hhhc--CCCcEEEec
Confidence 5553 3356 777665554
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0002 Score=70.96 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=63.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~~vl~ 142 (341)
.++++|+|+|.+|..+++.+...|. +|+++++++.++..... .|+...+..++++.+|+||.++.... +..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga----~ViV~d~dp~ra~~A~~-~G~~v~~l~eal~~aDVVI~aTG~~~vI~~--- 283 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGA----RVIVTEVDPICALQAAM-DGFRVMTMEEAAELGDIFVTATGNKDVITA--- 283 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEcCCchhhHHHHh-cCCEecCHHHHHhCCCEEEECCCCHHHHHH---
Confidence 4689999999999999999999885 89999999887655444 36633356788899999999986433 321
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
+. ...+ +++.++++.
T Consensus 284 ~~-~~~m--K~GailiNv 298 (425)
T PRK05476 284 EH-MEAM--KDGAILANI 298 (425)
T ss_pred HH-HhcC--CCCCEEEEc
Confidence 22 2234 677777765
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=70.21 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=49.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--------Cc-cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--------DF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--------g~-~~~s~~e~~~~aDvIilaV 132 (341)
+||+|||+|++|+.++..|...|.+ .++.++|+++++++....++ .. ...+..+.+++||+||++.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~--~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita 81 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIA--DELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA 81 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--CEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence 5899999999999999999988862 48999999877655322211 22 2234456789999999975
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=68.09 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=55.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhh-hcCcCCCc--cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKL-HWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~-~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
+||||||+|++|..++..+++... .++ .++++++++.. .+.+++|+ ...+.++++. +.|+||+|+|+....
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~---~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~ 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEH---LEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCC---cEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH
Confidence 689999999999999888876432 244 57888887533 34445787 3456677765 578999999988766
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+.....
T Consensus 79 e~a~~a 84 (285)
T TIGR03215 79 RHARLL 84 (285)
T ss_pred HHHHHH
Confidence 666544
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=67.62 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=65.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------C---Cc-cccChHHHhhcCCEEEEeeCh
Q psy316 67 VGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------M---DF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 67 IgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~---g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
|+|||+ |.||..++..|+..|.....+|.++|+++++++....+ . .+ ..++..+.+++||+||++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 99999999999988732245899999988765532221 1 22 345557889999999995511
Q ss_pred ----------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 ----------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 ----------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
..++++.+++ .++ .++.+++..++.++
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i-~~~---~p~a~~i~~tNP~d 123 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNI-EKY---SPDAWIIVVSNPVD 123 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEecCcHH
Confidence 2355666666 554 36667776766655
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.2e-05 Score=73.09 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=56.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CCc---cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MDF---ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g~---~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.+++|||+|..|..-++.+... .+-.+|.+|+|++++++++.++ +++ .+.+.++++.+||+|+.|++...-.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~--~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~ 206 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAV--RPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA 206 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHH--S--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred ceEEEECCCHHHHHHHHHHHHh--CCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence 5899999999999999988764 2457999999999888765432 344 5778999999999999999876411
Q ss_pred HHHHHhhhcccccCCCcEEEEe
Q psy316 139 SAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ +++..|.++
T Consensus 207 P~~~---~~~l--~~g~hi~~i 223 (313)
T PF02423_consen 207 PVFD---AEWL--KPGTHINAI 223 (313)
T ss_dssp ESB----GGGS---TT-EEEE-
T ss_pred cccc---HHHc--CCCcEEEEe
Confidence 3332 2246 778776665
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0016 Score=60.08 Aligned_cols=164 Identities=13% Similarity=0.169 Sum_probs=103.5
Q ss_pred Cc-cccChHHHhhcCCEEEEeeChHH-HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEE
Q psy316 112 DF-ALNDNHRIIKEAEYVFLAMKPQY-LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRV 189 (341)
Q Consensus 112 g~-~~~s~~e~~~~aDvIilaV~~~~-v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~ 189 (341)
|+ +++|..|+++++|++|+-+|-.. -..+++.+ .+++ ++|.+|.+. ..++.-.+.+.|... .+.+.. |..+
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki-~~~i--pEgAII~~t-CTIpt~~ly~~le~l--~R~Dvg-IsS~ 200 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKF-ADDI--KEGAIVTHA-CTIPTTKFAKIFKDL--GRDDLN-VTSY 200 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHH-HhhC--CCCCEEecc-ccCCHHHHHHHHHHh--CcccCC-eecc
Confidence 56 66677889999999999998644 35677777 7778 778777665 456665554444320 013444 5555
Q ss_pred cCC-chhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---H-
Q psy316 190 MPN-TAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---A- 263 (341)
Q Consensus 190 mpn-~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~- 263 (341)
+|. .|..- |...+.-+ -.++ ++.+++.+|.++.|.. +.++.+.+..+.-+.+. ..+....++.+. +
T Consensus 201 HPaaVPgt~--Gq~~i~eg-yAtE--EqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~---VTAv~~aGiL~Y~~~~t 272 (342)
T PRK00961 201 HPGAVPEMK--GQVYIAEG-YADE--EAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSA---VTAIVYAGILAYRDAVT 272 (342)
T ss_pred CCCCCCCCC--Cceecccc-cCCH--HHHHHHHHHHHHhCCCeeecchhhcchhhhHHHH---HHHHHHHHHHHHHHHHH
Confidence 553 22221 33333222 3456 8999999999999876 45677766655544332 222333333332 2
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 264 VKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 264 ~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.-.|-|.+-+.+.+..++.-.+.+++.
T Consensus 273 qIlgAP~~mie~qa~eaL~tmasLme~ 299 (342)
T PRK00961 273 QILGAPADFAQMMADEALTQITALMRE 299 (342)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 247889888888888888888888766
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00019 Score=71.55 Aligned_cols=97 Identities=10% Similarity=0.149 Sum_probs=69.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHH--HHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYL--DSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v--~~vl 141 (341)
.++++|+|+|.+|..+++.+...|. +|+++++++.++..... .|....+..+++..+|+||.++....+ .+.+
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga----~VIV~e~dp~r~~eA~~-~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L 328 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGA----RVIVTEIDPICALQALM-EGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHM 328 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCchhhHHHHh-cCCeeccHHHHHhhCCEEEECCCCccchHHHHH
Confidence 4789999999999999999988884 89999999876544333 365223567888999999998765432 3444
Q ss_pred HHhhhcccccCCCcEEEEecC-C--CCHHHHHHh
Q psy316 142 QGLVNDKVTLNSSRCIISMLV-G--VDLETLKKK 172 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a-g--i~~~~l~~~ 172 (341)
.. + +++.+++.+.- + +....|.+.
T Consensus 329 ~~-----M--K~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 329 RK-----M--KNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred hc-----C--CCCCEEEEcCCCCCccCHHHHhhc
Confidence 43 4 67788887743 2 334556554
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00032 Score=69.19 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=69.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~~vl~ 142 (341)
.++++|||+|.+|..+++.+...|. +|+++++++.+...... .|....+.+++++.+|++|.++.... +..
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga----~ViV~d~dp~r~~~A~~-~G~~v~~leeal~~aDVVItaTG~~~vI~~--- 266 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGA----RVIVTEVDPIRALEAAM-DGFRVMTMEEAAKIGDIFITATGNKDVIRG--- 266 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcC----EEEEEeCChhhHHHHHh-cCCEeCCHHHHHhcCCEEEECCCCHHHHHH---
Confidence 4789999999999999999998884 89999999877654444 46633355778899999999986543 322
Q ss_pred HhhhcccccCCCcEEEEecCC---CCHHHHHHh
Q psy316 143 GLVNDKVTLNSSRCIISMLVG---VDLETLKKK 172 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ag---i~~~~l~~~ 172 (341)
+. ...+ +++.+++...-+ ++.+.|.+.
T Consensus 267 ~~-~~~m--K~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 267 EH-FENM--KDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred HH-HhcC--CCCcEEEEECCCCceeCHHHHHHH
Confidence 12 2335 677788866432 445555543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0003 Score=69.56 Aligned_cols=87 Identities=11% Similarity=0.151 Sum_probs=65.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl~ 142 (341)
..+++|+|+|.+|..+++.+...|. +|+++++++.+++.... +|+...+..+++..+|+||.|+... .+..-
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga----~ViV~d~d~~R~~~A~~-~G~~~~~~~e~v~~aDVVI~atG~~~~i~~~-- 274 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGA----RVIVTEVDPICALQAAM-EGYEVMTMEEAVKEGDIFVTTTGNKDIITGE-- 274 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEECChhhHHHHHh-cCCEEccHHHHHcCCCEEEECCCCHHHHHHH--
Confidence 4689999999999999999998884 89999999988876665 6872224567788999999998643 33332
Q ss_pred HhhhcccccCCCcEEEEec
Q psy316 143 GLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ 161 (341)
. ...+ +++.+++.+.
T Consensus 275 -~-l~~m--k~GgilvnvG 289 (413)
T cd00401 275 -H-FEQM--KDGAIVCNIG 289 (413)
T ss_pred -H-HhcC--CCCcEEEEeC
Confidence 1 2234 6777777653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=69.10 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=60.5
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCc---CC--Cc---cccChHHHhhcCCEEEEeeC-
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPE---PM--DF---ALNDNHRIIKEAEYVFLAMK- 133 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~---~~--g~---~~~s~~e~~~~aDvIilaV~- 133 (341)
|+|||+|.||..++..|...|+ . +|+++|+++++++. +.. .. .. ...+ .+.+++||+||+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l--~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL--G-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC--c-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecCC
Confidence 6899999999999999988874 2 89999998765431 111 01 11 2234 456899999999872
Q ss_pred ---h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ---P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ---~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+ ..++++++++ .++. ++.++|-.++.++
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i-~~~~---p~~~iIv~sNP~d 119 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENI-KKYA---PNAIVIVVTNPLD 119 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecCcHH
Confidence 1 1245666666 6654 5556665666654
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.6e-05 Score=69.69 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=52.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-----c---cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-----F---ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-----~---~~~s~~e~~~~aDvIilaV~~ 134 (341)
+++.|||+|.+|++++..|.+.|. .+|+++||++++++.+.++++ . ...+..+.+.++|+||-|+|.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~---~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGV---ERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC---CEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 689999999999999999999985 589999999999888765431 1 122334456678888888764
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0023 Score=59.27 Aligned_cols=164 Identities=11% Similarity=0.149 Sum_probs=103.4
Q ss_pred Cc-cccChHHHhhcCCEEEEeeChHH-HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEE
Q psy316 112 DF-ALNDNHRIIKEAEYVFLAMKPQY-LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRV 189 (341)
Q Consensus 112 g~-~~~s~~e~~~~aDvIilaV~~~~-v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~ 189 (341)
|+ +++|..|+++++|++|+-+|-.. -..+++.+ .+++ ++|.+|.+. ..++.-.+.+.+... + +.+.. |..+
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikki-i~~l--pEgAII~~t-CTIpt~~ly~ilE~l-~-R~Dvg-VsS~ 198 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKF-IDDI--PEGAIVTHA-CTIPTTKFAKIFEDL-G-REDLN-VTSY 198 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHH-HhhC--CCCCEEecc-ccCChHHHHHHHHhh-C-cccCC-eecc
Confidence 56 66777889999999999998644 35677777 7778 778777765 456665554444320 0 13444 5566
Q ss_pred cCC-chhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---H-
Q psy316 190 MPN-TAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---A- 263 (341)
Q Consensus 190 mpn-~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~- 263 (341)
+|. .|..- .+.. +.- .-.++ ++.+++.+|.++.|.. +.++.+.+..+.-+.+. ..+....++.+. +
T Consensus 199 HPaaVPgt~-~q~Y-i~e-gyAtE--EqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~---VTAv~~aGiL~Y~~~~t 270 (340)
T TIGR01723 199 HPGCVPEMK-GQVY-IAE-GYASE--EAVNKLYELGKKARGKAFKMPANLLGPVCDMCSA---VTAIVYAGLLAYRDAVT 270 (340)
T ss_pred CCCCCCCCC-CceE-eec-ccCCH--HHHHHHHHHHHHhCCCeeecchhhccchhhHHHH---HHHHHHHHHHHHHHHHH
Confidence 654 22222 2222 222 23556 8999999999999876 45677766655544332 222223333332 2
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 264 VKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 264 ~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.-.|-|.+-+.+.+..++.-.+.+++.
T Consensus 271 ~IlgAP~~miq~qa~eaL~tmasLme~ 297 (340)
T TIGR01723 271 KILGAPADFAQMMADEALTQIHNLMEE 297 (340)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 347889888888888888888888766
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00012 Score=71.90 Aligned_cols=102 Identities=20% Similarity=0.179 Sum_probs=69.7
Q ss_pred CeEEEEcccHHHHHH-HHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc----c---------------c--cChHH--
Q psy316 65 TKVGFIGAGNMAQAV-ATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF----A---------------L--NDNHR-- 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~ai-a~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~----~---------------~--~s~~e-- 120 (341)
|||.++|+|+||+++ ...|.++| ++|++.+++++..+.++++ |. . . .+.++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g----~~V~~vd~~~~~v~aL~~q-glY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~ 75 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG----FEVTFVDVNQELIDALNKR-KSYQVIVVGENEQVETVSNVSAINSADEEAVI 75 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC----CeEEEEECCHHHHHHHhcC-CCeEEEEecCCCcEEEEeeEeeeCCCCHHHHH
Confidence 689999999999966 55566666 5899999988888888765 42 0 0 01122
Q ss_pred -HhhcCCEEEEeeChHHHHHHHHHhhhccccc------CCCcEEEEecCCCCH-HHHHHh
Q psy316 121 -IIKEAEYVFLAMKPQYLDSAIQGLVNDKVTL------NSSRCIISMLVGVDL-ETLKKK 172 (341)
Q Consensus 121 -~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~------~~~~iIVs~~agi~~-~~l~~~ 172 (341)
.+.++|+|+++|++.....+...+ .+.|.. .+.-+|++|.++..- +.+++.
T Consensus 76 ~~~~~~dlvt~~v~~~~~~s~~~~l-~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~ 134 (381)
T PRK02318 76 EAIAEADLVTTAVGPNILPFIAPLI-AKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKH 134 (381)
T ss_pred HHhcCCCEEEeCCCcccchhHHHHH-HHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHH
Confidence 234789999999988777777666 554410 112278999999875 344443
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0002 Score=69.98 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=62.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c---c---cChHHHhhcCCEEEEeeCh---
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A---L---NDNHRIIKEAEYVFLAMKP--- 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~---~---~s~~e~~~~aDvIilaV~~--- 134 (341)
.++.|||+|.+|...++.+...|. +|+++||++++++.+...++. . . .+..+.+.++|+||.+++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa----~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGA----TVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCC----eEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 569999999999999999999884 799999999988877654543 1 1 2345567899999999731
Q ss_pred ---HH-HHHHHHHhhhcccccCCCcEEEEec
Q psy316 135 ---QY-LDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 135 ---~~-v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
.. ..+.++. + +++.+||++.
T Consensus 244 ~~p~lit~~~l~~-----m--k~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQ-----M--KPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhc-----C--CCCCEEEEEe
Confidence 11 1333333 4 6778888765
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00012 Score=64.72 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=61.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----Cc---c--ccC---hHHHhhcCCEEEE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----DF---A--LND---NHRIIKEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g~---~--~~s---~~e~~~~aDvIil 130 (341)
.+++.|+|+ |.+|..+++.|.+.| .+|++++|++++++.+.+++ +. . ..+ ..+.++++|+||.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g----~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG----ARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC----CEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 368999996 999999999999887 48999999998877655422 22 1 122 2356788999999
Q ss_pred eeChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 131 AMKPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 131 aV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++.... ..... .... +++.+++++..
T Consensus 104 at~~g~~--~~~~~-~~~~--~~~~vv~D~~~ 130 (194)
T cd01078 104 AGAAGVE--LLEKL-AWAP--KPLAVAADVNA 130 (194)
T ss_pred CCCCCce--echhh-hccc--CceeEEEEccC
Confidence 9986543 11111 2223 44667887643
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=68.48 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=62.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------CC---cc-ccChHHHhhcCCEEEEee-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------MD---FA-LNDNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~g---~~-~~s~~e~~~~aDvIilaV- 132 (341)
+||+|||+|++|+.++..|...|. ..++.++|+++++++....+ +. +. ..+. +.+++||+||++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGL--ADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTAG 80 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECCC
Confidence 599999999999999999988885 45899999987655422211 11 22 2444 4589999999965
Q ss_pred ---ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 ---KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ---~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+|. . ++++.+.+ ..+ .++.+++..++.++
T Consensus 81 ~~~k~g~~R~dll~~N~~i~~~~~~~i-~~~---~p~~~vivvsNP~d 124 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKL-VKY---SPNAILLVVSNPVD 124 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCcEEEEccChHH
Confidence 121 1 33344444 444 35667777767655
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00037 Score=67.55 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=62.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------C-c-cc-cChHHHhhcCCEEEEee--
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------D-F-AL-NDNHRIIKEAEYVFLAM-- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g-~-~~-~s~~e~~~~aDvIilaV-- 132 (341)
+||+|||+|++|++++..|+..++ ..++.++|+++++++..+.++ + . +. ....+.+++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l--~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL--ADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCC
Confidence 599999999999999999998886 358999999876654322111 1 2 21 12245589999999984
Q ss_pred --ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 --KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 --~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+|. .++++.+.+ ..+ .++.+++..++.++.
T Consensus 116 ~~k~g~tR~dll~~N~~I~~~i~~~I-~~~---~p~~ivivvtNPvdv 159 (350)
T PLN02602 116 RQIPGESRLNLLQRNVALFRKIIPEL-AKY---SPDTILLIVSNPVDV 159 (350)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEecCchHH
Confidence 121 122344444 443 366677777776653
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00069 Score=61.76 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=63.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC----hhhh-------hhcCcCCCc--cccChHHHhhcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS----ERFK-------LHWPEPMDF--ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~----~e~~-------~~l~~~~g~--~~~s~~e~~~~aDvIila 131 (341)
+||.|+|+|.+|.+++..|.+.|. ...+|+++||+ .++. +.+.++++. ...+..+.+.++|+||=+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIga 104 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGV 104 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeC
Confidence 689999999999999999999985 12289999998 4443 223222221 112556778899999999
Q ss_pred eChHHH-HHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 MKPQYL-DSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V~~~~v-~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+++..+ .++++.+ .++.+|..+.+..+
T Consensus 105 T~~G~~~~~~l~~m-------~~~~ivf~lsnP~~ 132 (226)
T cd05311 105 SRPGVVKKEMIKKM-------AKDPIVFALANPVP 132 (226)
T ss_pred CCCCCCCHHHHHhh-------CCCCEEEEeCCCCC
Confidence 985443 2444444 45667777776654
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0004 Score=67.22 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=53.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC------------------Cc-cccChHHHhh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM------------------DF-ALNDNHRIIK 123 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~------------------g~-~~~s~~e~~~ 123 (341)
++||||+|+|+||+.+++.+.+.. .-+| .+++++++....+.+++ ++ ...+..++..
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~---d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP---DMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC---CcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 368999999999999999887643 2344 46777765444332211 23 3445667777
Q ss_pred cCCEEEEeeChHHHHHHHHHh
Q psy316 124 EAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 124 ~aDvIilaV~~~~v~~vl~~i 144 (341)
++|+||.|+++....+.....
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~ 98 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELY 98 (341)
T ss_pred cCCEEEECCCchhhHHHHHHH
Confidence 899999999988776666543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00034 Score=69.80 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=55.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cC---hHHH-hhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---ND---NHRI-IKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s---~~e~-~~~aDvIilaV~~~ 135 (341)
|+|.|+|+|.+|..+++.|.+.|+ +|+++++++++.+.+.+..++ .. .+ ..++ +.++|.||++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~----~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN----DVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 589999999999999999999884 899999999998887653443 11 12 1223 56899999999876
Q ss_pred HHHHHH
Q psy316 136 YLDSAI 141 (341)
Q Consensus 136 ~v~~vl 141 (341)
.....+
T Consensus 77 ~~n~~~ 82 (453)
T PRK09496 77 ETNMVA 82 (453)
T ss_pred HHHHHH
Confidence 655444
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00056 Score=68.19 Aligned_cols=69 Identities=22% Similarity=0.268 Sum_probs=48.6
Q ss_pred CeEEEEcccHHHHHHHH--HHHhcCCCCCCeEEEEcCChhhhhhcC-------cCCC----c-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVAT--SLIRTGLCIPAQIIASAPSERFKLHWP-------EPMD----F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~--~L~~~G~~~~~~V~v~~r~~e~~~~l~-------~~~g----~-~~~s~~e~~~~aDvIil 130 (341)
+||+|||+|.||...+. .++....+...+|.++|+++++++... ...+ + .++|..+++++||+||.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 69999999999966554 665222234458999999998876311 1112 2 35676888999999999
Q ss_pred eeC
Q psy316 131 AMK 133 (341)
Q Consensus 131 aV~ 133 (341)
++.
T Consensus 82 ti~ 84 (431)
T PRK15076 82 AIQ 84 (431)
T ss_pred eee
Confidence 974
|
|
| >KOG2305|consensus | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00037 Score=62.69 Aligned_cols=149 Identities=11% Similarity=0.104 Sum_probs=101.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC------CC--------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP------MD--------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~------~g--------------~-~~~s~~ 119 (341)
-||+|+|.|.+|++.|--+...| ++|.+||..++.+.. +.++ .| + .+++..
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~G----yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSG----YQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred cceeEeecccccchHHHHHhccC----ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 48999999999999999998888 499999998765442 1111 11 1 456788
Q ss_pred HHhhcCCEEEEeeChH-HH-HHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ-YL-DSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~-~v-~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
|+.+.+=.|=-|+|.. .+ +++.+++ ...+ .+.+|+-|-++.+.++.+..-+. +... ++-++|-.|..+
T Consensus 80 E~vk~Ai~iQEcvpE~L~lkk~ly~ql-D~i~--d~~tIlaSSTSt~mpS~~s~gL~------~k~q-~lvaHPvNPPyf 149 (313)
T KOG2305|consen 80 ELVKGAIHIQECVPEDLNLKKQLYKQL-DEIA--DPTTILASSTSTFMPSKFSAGLI------NKEQ-CLVAHPVNPPYF 149 (313)
T ss_pred HHHhhhhhHHhhchHhhHHHHHHHHHH-HHhc--CCceEEeccccccChHHHhhhhh------hhhh-eeEecCCCCCcc
Confidence 8898888888899854 33 3455666 6556 56656666556666666655554 2445 677777444322
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV 230 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~ 230 (341)
- -.+-+++.+-.++ +.+++.+.|++++|..
T Consensus 150 i-PLvElVPaPwTsp--~tVdrt~~lM~sigq~ 179 (313)
T KOG2305|consen 150 I-PLVELVPAPWTSP--DTVDRTRALMRSIGQE 179 (313)
T ss_pred c-chheeccCCCCCh--hHHHHHHHHHHHhCCC
Confidence 1 1223455565666 8899999999999964
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00019 Score=67.34 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccChHHHhhcCCEEEEeeChH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s~~e~~~~aDvIilaV~~~ 135 (341)
..+++.|+|+|.+|.+++..|...|. .+|++++|+.++++.+.++++. ...+..+.+..+|+||-|+|..
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~---~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGV---AEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 34689999999999999999999884 5899999999998877664431 1012234567788888888754
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=66.96 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=48.0
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----------Cc-cccChHHHhhcCCEEEEee
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----------DF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----------g~-~~~s~~e~~~~aDvIilaV 132 (341)
||+|||+|++|+.+|..|+..++ ..++.++|+++++++....++ .+ ...+..+.+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~--~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGL--FSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECC
Confidence 79999999999999999998886 358999999876544211111 12 2223467899999999986
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=67.97 Aligned_cols=68 Identities=19% Similarity=0.102 Sum_probs=51.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----ccc---ChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALN---DNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~---s~~e~~~~aDvIilaV~~ 134 (341)
.+++.|||+|-+|++++..|.+.|. .+|++++|++++++.+.++++. ... +..+.+.++|+||-|+|.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~---~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGV---TDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 4689999999999999999999985 5899999999999888764421 111 112334567787777764
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00021 Score=70.06 Aligned_cols=68 Identities=10% Similarity=0.187 Sum_probs=55.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCC-CCeEEEEcCChhhhhhcCcC----CC----c-cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCI-PAQIIASAPSERFKLHWPEP----MD----F-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~-~~~V~v~~r~~e~~~~l~~~----~g----~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
.+++|||+|.+|...++.+.... + -.+|++|+|++++++++.++ ++ + .+.+.++++.+||||+.|++.
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~--~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVC--PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc--CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 68999999999999999887732 2 36999999999988765532 22 4 568899999999999999974
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00094 Score=52.41 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=55.8
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v~~ 139 (341)
..++.++|+|++|.+++..+. ..|+ .-+.++|.++++.-.-. .|+ +..+..++.+. .|+-+++||+....+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~---~i~~~~dv~~~~~G~~i--~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~ 77 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGF---GIVAVFDVDPEKIGKEI--GGIPVYGSMDELEEFIEIDIAIITVPAEAAQE 77 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCE---CEEEEEEECTTTTTSEE--TTEEEESSHHHHHHHCTTSEEEEES-HHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCC---CCEEEEEcCCCccCcEE--CCEEeeccHHHhhhhhCCCEEEEEcCHHHHHH
Confidence 357999999999999986554 3443 34568898888654322 256 55577777666 999999999999999
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
++.++
T Consensus 78 ~~~~~ 82 (96)
T PF02629_consen 78 VADEL 82 (96)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00051 Score=66.57 Aligned_cols=101 Identities=22% Similarity=0.258 Sum_probs=66.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCC-------Ccccc--ChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPM-------DFALN--DNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~-------g~~~~--s~~e~~~~aDvIilaV~ 133 (341)
+||+|||+ |.+|..+++.|.++ +..++. +++++...-+.+.+.+ ..... +..+.+.++|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h---P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH---PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC---CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCC
Confidence 58999998 99999999999865 334666 5454432222222111 11122 44555568999999999
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
.....++...+ . ..+..||++++..- .+..++|.+
T Consensus 78 ~~~s~~~~~~~----~--~~G~~VIDlS~~fR~~~~~~y~~~y~ 115 (346)
T TIGR01850 78 HGVSAELAPEL----L--AAGVKVIDLSADFRLKDPEVYEKWYG 115 (346)
T ss_pred chHHHHHHHHH----H--hCCCEEEeCChhhhcCChhhhHHhcC
Confidence 99888887766 3 45788998876543 344566665
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00093 Score=72.83 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=59.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCC----------CCeEEEEcCChhhhhhcCcCC-C---c-c-ccChHHHh---hc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCI----------PAQIIASAPSERFKLHWPEPM-D---F-A-LNDNHRII---KE 124 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~----------~~~V~v~~r~~e~~~~l~~~~-g---~-~-~~s~~e~~---~~ 124 (341)
++||+|||+|.||+..++.|.+...+. ...|+++++++++++.+.+.+ + + . +.+.+++. +.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 468999999999999999998764211 113889999999988876655 4 2 2 44555443 57
Q ss_pred CCEEEEeeChHHHHHHHHHh
Q psy316 125 AEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 125 aDvIilaV~~~~v~~vl~~i 144 (341)
+|+|+.|+|+....+++...
T Consensus 649 ~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 649 VDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred CCEEEECCCchhhHHHHHHH
Confidence 99999999987666666543
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.001 Score=64.35 Aligned_cols=74 Identities=11% Similarity=0.157 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC-Cc-cccChHHHhh--cCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM-DF-ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
++||||||+|.+|.. .+..+.+.. ..++ .+++++++++. +++ +. ...|.+++++ +.|+|++|+|+...
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~---~~~l~av~d~~~~~~~---~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTP---GLELAAVSSSDATKVK---ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCC---CCEEEEEECCCHHHHH---hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 469999999999984 556665532 2355 47999987754 224 34 6678888886 57999999998765
Q ss_pred HHHHHH
Q psy316 138 DSAIQG 143 (341)
Q Consensus 138 ~~vl~~ 143 (341)
.++...
T Consensus 78 ~~~~~~ 83 (346)
T PRK11579 78 FPLAKA 83 (346)
T ss_pred HHHHHH
Confidence 555544
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0012 Score=62.95 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=62.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCCh--hhhhhcCcC-------CC--c--cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSE--RFKLHWPEP-------MD--F--ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~--e~~~~l~~~-------~g--~--~~~s~~e~~~~aDvIil 130 (341)
|||+|||+ |.+|..++..|...|+ ..+|.+++|++ ++++..+.+ .+ . ...+..+.+.+||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~--~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV--VKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEE
Confidence 68999998 9999999999999885 24799999954 343322111 12 1 12222456999999999
Q ss_pred eeC----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 131 AMK----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 131 aV~----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
++- + +.++++.+.+ .++. ++.+||-..+.++.
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i-~~~~---~~~~viv~~npvd~ 126 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQI-AEFA---PDTKILVVTNPVDV 126 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEeCCchHH
Confidence 983 1 1244455555 5543 45566666676664
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00044 Score=65.72 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=62.5
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------C-c--cccChHHHhhcCCEEEEeeC--h
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------D-F--ALNDNHRIIKEAEYVFLAMK--P 134 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g-~--~~~s~~e~~~~aDvIilaV~--~ 134 (341)
|+|||+|.+|+.++..|+..|+ .++++++|+++++++..+.++ . . ...+..+.+++||+||++.. .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~--~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGL--ASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCC
Confidence 6899999999999999998885 358999999887766443321 1 1 11222568999999999973 1
Q ss_pred --H------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 --Q------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 --~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. .++++.+.+ +++ .++.+++..++..+
T Consensus 79 ~~~~~R~~l~~~n~~i~~~~~~~i-~~~---~p~~~viv~sNP~d 119 (300)
T cd00300 79 KPGETRLDLINRNAPILRSVITNL-KKY---GPDAIILVVSNPVD 119 (300)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEccChHH
Confidence 1 134444555 444 35666776666554
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00027 Score=66.02 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc-cccChHH-HhhcCCEEEEeeChHH--
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF-ALNDNHR-IIKEAEYVFLAMKPQY-- 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~-~~~s~~e-~~~~aDvIilaV~~~~-- 136 (341)
.+++.|+|+|.+|.+++..|.+.|. +|++++|++++++.+.+++ +. ...+..+ ...++|+||.|+|...
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~----~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADC----NVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSG 192 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCC
Confidence 4689999999999999999999884 8999999998887765532 22 1222222 2357899999998632
Q ss_pred -HHHHHHHhhhcccccCCCcEEEEec
Q psy316 137 -LDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 137 -v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+.++.-. ...+ +++.+++++.
T Consensus 193 ~~~~~~~~--~~~l--~~~~~v~D~~ 214 (270)
T TIGR00507 193 NIDEPPVP--AEKL--KEGMVVYDMV 214 (270)
T ss_pred CCCCCCCC--HHHc--CCCCEEEEec
Confidence 2111000 1124 5677777764
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00085 Score=63.78 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=63.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------C--c-ccc-ChHHHhhcCCEEEEee-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------D--F-ALN-DNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g--~-~~~-s~~e~~~~aDvIilaV- 132 (341)
+||+|||+|++|++++..|+..++ ..++.++|++++.++--+.++ + . +.. ...+.++++|+|+++-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~--~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL--GSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc--cceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCC
Confidence 589999999999999999987775 348999999866554322221 1 2 222 2356789999999986
Q ss_pred ---ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 ---KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ---~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||. .++++.+++ ..+ .++.+++-.+|.+++
T Consensus 79 ~prKpGmtR~DLl~~Na~I~~~i~~~i-~~~---~~d~ivlVvtNPvD~ 123 (313)
T COG0039 79 VPRKPGMTRLDLLEKNAKIVKDIAKAI-AKY---APDAIVLVVTNPVDI 123 (313)
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHH-Hhh---CCCeEEEEecCcHHH
Confidence 232 123344445 444 356677767787764
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00081 Score=64.53 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=63.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCChhh--hhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSERF--KLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e~--~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
++||+|||+ |++|+.++..|...|.+. ..++.++|++++. ++..+.++ .+ +..+..+.+++||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 358999999 999999999999888632 1168899985432 33222111 12 23445678999999
Q ss_pred EEEee----ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 128 VFLAM----KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 128 IilaV----~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||++- +|. . ++++..++ .++- .++.++|-+++.++.
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i-~~~~--~~~~iiivvsNPvD~ 133 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKAL-NDVA--SRDVKVLVVGNPCNT 133 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhC--CCCeEEEEecCcHHH
Confidence 99985 221 1 34444455 4443 246677777676653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0012 Score=63.51 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=64.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCChh--hhhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSER--FKLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e--~~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
++||+|||+ |++|+.++..|...+.+. +.++.++|+++. +++..+-++ .. ...+..+.+++||+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 469999998 999999999998877532 227899998542 233221111 12 23455678999999
Q ss_pred EEEee----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 128 VFLAM----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 128 IilaV----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||++- +|. .++++..++ .++. .++.+++-+++.++.
T Consensus 84 VVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i-~~~~--~~~~iiivvsNPvDv 135 (326)
T PRK05442 84 ALLVGARPRGPGMERKDLLEANGAIFTAQGKAL-NEVA--ARDVKVLVVGNPANT 135 (326)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHhC--CCCeEEEEeCCchHH
Confidence 99875 221 134444555 5544 457777777776664
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00049 Score=67.49 Aligned_cols=75 Identities=17% Similarity=0.287 Sum_probs=52.4
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc-----cccC---hHHHhhcCCEEEEeeChH
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF-----ALND---NHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~-----~~~s---~~e~~~~aDvIilaV~~~ 135 (341)
|.|+|+|.+|+.+++.|.+.+. ..+|++.+|+.++++++.+++ .+ ...+ ..++++++|+||-|++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 7899999999999999998762 128999999999988876531 21 1222 345678999999999987
Q ss_pred HHHHHHHH
Q psy316 136 YLDSAIQG 143 (341)
Q Consensus 136 ~v~~vl~~ 143 (341)
.-..+++.
T Consensus 79 ~~~~v~~~ 86 (386)
T PF03435_consen 79 FGEPVARA 86 (386)
T ss_dssp GHHHHHHH
T ss_pred hhHHHHHH
Confidence 55555543
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.002 Score=57.77 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-cc--cChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-AL--NDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~~--~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.++|.|||+|.+|...++.|+++|. +|++++++. +.+..+..+..+ .. .-..+.+..+|+||.|+....+..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga----~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~ 85 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGA----HIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNE 85 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----eEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHH
Confidence 4789999999999999999999984 899998764 233444332122 11 111345778999999999888777
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
.+.+.
T Consensus 86 ~i~~~ 90 (202)
T PRK06718 86 QVKED 90 (202)
T ss_pred HHHHH
Confidence 66554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.001 Score=55.57 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=68.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc------cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF------ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~------~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
+||..||+| -|..++..|.+.|+ +|++.|.+++..+.+++ .++ .++.+.+.-+++|+|.-.=||..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~----~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~ 91 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGF----DVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQ 91 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHH
Confidence 689999999 89889999999885 99999999998776655 343 2344566788999999998988887
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.-+.++ +..+ +.+-+|..+.+
T Consensus 92 ~~~~~l-a~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 92 PFILEL-AKKI--NVPLIIKPLSG 112 (134)
T ss_pred HHHHHH-HHHc--CCCEEEEcCCC
Confidence 777777 6666 55545555533
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0018 Score=57.96 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=31.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||+|||+|.||+.++..|...|. .+++++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gv---g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGI---GKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEECCC
Confidence 35789999999999999999999996 579999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0018 Score=62.67 Aligned_cols=67 Identities=6% Similarity=0.006 Sum_probs=55.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
..||||||+ .||...+..+.+... ..+ +.+++|++++++.+++++|+ ...+.++++.+.|++++++|
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~--~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ip 71 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPE--RFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVR 71 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCC--CcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeC
Confidence 468999999 689999999877530 124 45899999999999988998 78899999988888888874
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00038 Score=70.32 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=52.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~ 136 (341)
.++++|+|+|.+|.+++..|.+.|. +|++++|++++++.+.++++. . ..+.. .+.++|+||.|+|...
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~----~V~i~~R~~~~~~~la~~~~~~~~~~~~~~-~l~~~DiVInatP~g~ 402 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGA----ELLIFNRTKAHAEALASRCQGKAFPLESLP-ELHRIDIIINCLPPSV 402 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhccceechhHhc-ccCCCCEEEEcCCCCC
Confidence 3689999999999999999999984 899999999888877654432 1 12221 2568999999998754
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00062 Score=61.40 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=52.8
Q ss_pred CCeEEEEcccHHHHHHHHHHH--hcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLI--RTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~--~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
..+|+|||+|.+|..+++.+. ..| .++ .++|+++++........++ ...+..+.++ +.|++++|+|....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g----~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRG----FKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCC----cEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 468999999999999998643 234 354 4788887766433321223 3445566665 49999999998877
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.++...+
T Consensus 160 ~~i~~~l 166 (213)
T PRK05472 160 QEVADRL 166 (213)
T ss_pred HHHHHHH
Confidence 7766554
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=63.45 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCCh--hhhhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSE--RFKLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~--e~~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
+.||+|||+ |++|++++..|...+++. ..++.++|+++ ++++..+.++ +. +..+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 368999998 999999999999888521 11799999854 2232211110 12 22455678999999
Q ss_pred EEEee----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 128 VFLAM----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 128 IilaV----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||++- +|. .++++..++ .++- .++.+++-.++.++.
T Consensus 83 VVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i-~~~~--~~~~iiivvsNPvDv 134 (323)
T TIGR01759 83 ALLVGAFPRKPGMERADLLSKNGKIFKEQGKAL-NKVA--KKDVKVLVVGNPANT 134 (323)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhC--CCCeEEEEeCCcHHH
Confidence 99885 221 134455555 5543 337777777776653
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00082 Score=63.11 Aligned_cols=70 Identities=11% Similarity=0.228 Sum_probs=55.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.++|+|||. |.||..|+..|+++|. +|++|... +.++.+.+++||+||.|+. |..+...
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~ga----tVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~- 218 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNA----TVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKE- 218 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCC----EEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHH-
Confidence 589999999 9999999999999984 99999311 1256788899999999996 4444332
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
.+ +++.+||++
T Consensus 219 ------~i--k~GavVIDv 229 (284)
T PRK14179 219 ------FV--KEGAVVIDV 229 (284)
T ss_pred ------Hc--cCCcEEEEe
Confidence 24 788899987
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00097 Score=58.00 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=55.7
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNM-AQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~m-G~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.++|.|||+|.| |..+++.|.+.|. +|++++|+.+ +..+.+.++|+||.|++...+ +.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~----~V~v~~r~~~--------------~l~~~l~~aDiVIsat~~~~i---i~ 102 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNA----TVTVCHSKTK--------------NLKEHTKQADIVIVAVGKPGL---VK 102 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCC----EEEEEECCch--------------hHHHHHhhCCEEEEcCCCCce---ec
Confidence 579999999997 8889999999884 7999998732 345678899999999986432 21
Q ss_pred HhhhcccccCCCcEEEEecCC
Q psy316 143 GLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ag 163 (341)
...+ +++.+||++...
T Consensus 103 ---~~~~--~~~~viIDla~p 118 (168)
T cd01080 103 ---GDMV--KPGAVVIDVGIN 118 (168)
T ss_pred ---HHHc--cCCeEEEEccCC
Confidence 1234 567788887543
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=62.93 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=64.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCCh--hhhhhcCcCC---------Cc-cccChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSE--RFKLHWPEPM---------DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~--e~~~~l~~~~---------g~-~~~s~~e~~~~aDvI 128 (341)
.||+|||+ |++|+.++..|...+.+. ..++.++|+++ ++++-.+.++ +. +..+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999999 999999999999877532 12599999987 5443222111 12 224566889999999
Q ss_pred EEee----ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 129 FLAM----KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 129 ilaV----~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|++- +|. . ++++..++ .++. +++.+++-+++.++.
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i-~~~~--~~~~iiivvsNPvD~ 131 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEAL-NKVA--KPTVKVLVVGNPANT 131 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHH-HHhC--CCCeEEEEeCCcHHH
Confidence 9875 221 1 34445555 5543 366677767676653
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00079 Score=58.85 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=50.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc-cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+ |+.|+.|++-.++.|| +|+.+.||+++....... .-+ -.++..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH----eVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH----EVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC----eeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 79999998 9999999999999995 999999999988654221 012 22334567888999999984
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0022 Score=51.46 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=49.6
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccCh--HH-----HhhcCCEEEEeeChHHH
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDN--HR-----IIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~--~e-----~~~~aDvIilaV~~~~v 137 (341)
|-|+|+|.+|..+++.|.+.+ .+|++.++++++.+.+.++ |. ...+. .+ -+.+++.+|++++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~----~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG----IDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT----SEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCC----CEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 568999999999999999965 4899999999999888774 54 22222 11 24689999999986543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=62.07 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=60.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh--cCc---CCCc-cccC---hHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH--WPE---PMDF-ALND---NHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~--l~~---~~g~-~~~s---~~e~~~~aDvIilaV 132 (341)
-+.||+|||+ |++|+.++..|...+. .+++.++|++....+. +.. ...+ ..++ ..+.++++|+||++.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~--~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPH--VSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCC--CCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 3459999999 9999999999987664 4689999984322221 111 1122 2222 157899999999886
Q ss_pred C----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 K----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ~----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
- +. .++++++.+ +.+ .++.+|+-.++++..
T Consensus 85 G~~~~~~~tR~dll~~N~~i~~~i~~~i-~~~---~~~~iviv~SNPvdv 130 (321)
T PTZ00325 85 GVPRKPGMTRDDLFNTNAPIVRDLVAAV-ASS---APKAIVGIVSNPVNS 130 (321)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEecCcHHH
Confidence 1 21 122333444 333 456677766676653
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0021 Score=61.40 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=61.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhh---hhcCc-CCCc-c----ccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIR-TGLCIPAQIIASAPSERFK---LHWPE-PMDF-A----LNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~---~~l~~-~~g~-~----~~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+ |.+|++++..|.. .+. .+++.+++|++... -.+.. .... + ..+..+.++++|+||+|.-
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~--~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA--GSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC--ccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 68999999 9999999988855 332 36889999875321 12222 1111 1 2344677889999999972
Q ss_pred ----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+. .+.++++.+ .++ .++.+|+..+++++
T Consensus 79 ~~~~~~~~R~dll~~N~~i~~~ii~~i-~~~---~~~~ivivvsNP~D 122 (312)
T PRK05086 79 VARKPGMDRSDLFNVNAGIVKNLVEKV-AKT---CPKACIGIITNPVN 122 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEccCchH
Confidence 21 234445555 443 46677777778765
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0029 Score=62.09 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=62.0
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-----C-c-cccChH-HHhhcCCEEEEee
Q psy316 62 PMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-----D-F-ALNDNH-RIIKEAEYVFLAM 132 (341)
Q Consensus 62 ~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-----g-~-~~~s~~-e~~~~aDvIilaV 132 (341)
.+++||+|+|+ |..|..+.+.|.++- ..+|....++...-+.+...+ + . ...+.+ +.++++|+||+|+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP---~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHP---DFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCC---CCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcC
Confidence 47889999998 999999999888772 358887766543333322211 1 1 122222 2257899999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
|.....+++..+ ..+..||++++..
T Consensus 113 p~~~s~~i~~~~-------~~g~~VIDlSs~f 137 (381)
T PLN02968 113 PHGTTQEIIKAL-------PKDLKIVDLSADF 137 (381)
T ss_pred CHHHHHHHHHHH-------hCCCEEEEcCchh
Confidence 998777766655 4567889886543
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=62.02 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=62.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC-CCc--c-c-c--ChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP-MDF--A-L-N--DNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~-~g~--~-~-~--s~~e~~~~aDvIilaV 132 (341)
|||+|||+ |++|++++..|...++ ..++.++|++ +++. |..- ... . . . +..+.+++||+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~--~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL--VSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeC
Confidence 58999999 9999999999988875 3589999987 3322 1110 012 1 1 2 2357899999999886
Q ss_pred --C--hHH------------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 --K--PQY------------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 --~--~~~------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
| |.. ++++.+.+ .++ .++.+|+..+++++.
T Consensus 77 G~~~k~g~tR~dll~~N~~i~~~i~~~i-~~~---~p~a~vivvtNPvDv 122 (310)
T cd01337 77 GVPRKPGMTRDDLFNINAGIVRDLATAV-AKA---CPKALILIISNPVNS 122 (310)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEccCchhh
Confidence 2 211 23333444 443 467788888887764
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0035 Score=51.04 Aligned_cols=94 Identities=12% Similarity=0.223 Sum_probs=62.1
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIG----AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG----~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++|+||| -+..|..+.++|.++|+ +|+..+...... .|. .+.+..|.-...|++++++|+..+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~----~v~~Vnp~~~~i------~G~~~y~sl~e~p~~iDlavv~~~~~~~~~ 70 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGY----EVYPVNPKGGEI------LGIKCYPSLAEIPEPIDLAVVCVPPDKVPE 70 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-----EEEEESTTCSEE------TTEE-BSSGGGCSST-SEEEE-S-HHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCC----EEEEECCCceEE------CcEEeeccccCCCCCCCEEEEEcCHHHHHH
Confidence 4799999 59999999999999884 898887654222 365 66777774478999999999999999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+++++ .. + ..+.+++ ..|...+++.+...
T Consensus 71 ~v~~~-~~-~--g~~~v~~--~~g~~~~~~~~~a~ 99 (116)
T PF13380_consen 71 IVDEA-AA-L--GVKAVWL--QPGAESEELIEAAR 99 (116)
T ss_dssp HHHHH-HH-H--T-SEEEE---TTS--HHHHHHHH
T ss_pred HHHHH-HH-c--CCCEEEE--EcchHHHHHHHHHH
Confidence 99987 43 2 3344444 34544555555544
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=62.21 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=61.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCChhh--hhhcCcCC---------Cc-cccChHHHhhcCCEEE
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSERF--KLHWPEPM---------DF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e~--~~~l~~~~---------g~-~~~s~~e~~~~aDvIi 129 (341)
||+|||+ |++|+.++..|...+++. ..++.++|+++.. ++....++ .+ ...+..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 999999999999888652 2269999986442 33222111 11 1224467889999999
Q ss_pred Eee--C--hHH------------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 130 LAM--K--PQY------------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 130 laV--~--~~~------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
++- | +.. ++++..++ .++- +++.+++-.++.++.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i-~~~~--~~~~iiivvsNPvDv 130 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRAL-DKLA--KKDCKVLVVGNPANT 130 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhC--CCCeEEEEeCCcHHH
Confidence 875 2 111 33444445 4442 366677767676654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=49.36 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=45.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~~vl~ 142 (341)
.++++|+|+|.+|..++..|.+.+. .+|++|+| |++|-|++... +.+-
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~---~~v~v~~r--------------------------di~i~~~~~~~~~~~~-- 71 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGG---KKVVLCDR--------------------------DILVTATPAGVPVLEE-- 71 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEEcC--------------------------CEEEEcCCCCCCchHH--
Confidence 4689999999999999999999852 58999998 99999997543 2221
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
.+ . .+ +++.+|+++
T Consensus 72 ~~-~-~~--~~~~~v~~~ 85 (86)
T cd05191 72 AT-A-KI--NEGAVVIDL 85 (86)
T ss_pred HH-H-hc--CCCCEEEec
Confidence 12 2 23 567787765
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0033 Score=54.42 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=52.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccCh---HHHhhcCCEEEEeeCh---
Q psy316 67 VGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALNDN---HRIIKEAEYVFLAMKP--- 134 (341)
Q Consensus 67 IgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s~---~e~~~~aDvIilaV~~--- 134 (341)
|.|+|+ |.+|..+++.|++.| ++|++..|++++++. . .++ ...+. .++++.+|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~----~~V~~~~R~~~~~~~-~--~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG----HEVTALVRSPSKAED-S--PGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT----SEEEEEESSGGGHHH-C--TTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCC----CEEEEEecCchhccc-c--cccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678996 999999999999998 499999999998887 2 233 12233 4567799999999962
Q ss_pred --HHHHHHHHHh
Q psy316 135 --QYLDSAIQGL 144 (341)
Q Consensus 135 --~~v~~vl~~i 144 (341)
..++.+++.+
T Consensus 74 ~~~~~~~~~~a~ 85 (183)
T PF13460_consen 74 DVDAAKNIIEAA 85 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccccccccccc
Confidence 2344555544
|
... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0035 Score=60.62 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...+|.|||+|.+|+.++..|..+|+ .+++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv---g~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI---GKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCc
Confidence 45789999999999999999999996 5899998864
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0016 Score=64.85 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=66.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC-----CCeEEEEcCChhhhhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCI-----PAQIIASAPSERFKLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~-----~~~V~v~~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
..||+|||+ |++|.+++..|...+.+. ..++.++|+++++++..+-++ .+ +..+..+.+++||+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 368999999 999999999998872211 237899999988766322111 12 23456788999999
Q ss_pred EEEee----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 128 VFLAM----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 128 IilaV----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||++- +|. .++++.+.| ..+. .++.+||-+.+.++.
T Consensus 180 VVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I-~~~a--~p~~ivIVVsNPvDv 231 (444)
T PLN00112 180 ALLIGAKPRGPGMERADLLDINGQIFAEQGKAL-NEVA--SRNVKVIVVGNPCNT 231 (444)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhc--CCCeEEEEcCCcHHH
Confidence 99985 121 134444555 5533 466677767676654
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0017 Score=63.63 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=64.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCC---CeEEEE--cCChhhhhhcCcCC---------Cc-cccChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIP---AQIIAS--APSERFKLHWPEPM---------DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~---~~V~v~--~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDvI 128 (341)
.||+|||+ |++|..++..|...+.+.. -.+.++ |+++++++..+-++ .+ +..+..+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 58999999 9999999999998886441 134444 88877765322111 23 334556889999999
Q ss_pred EEee----ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 129 FLAM----KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 129 ilaV----~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|++- +|. . ++++...+ .++. +++.+||-+++.++.
T Consensus 125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I-~~~a--~~~~iviVVsNPvDv 175 (387)
T TIGR01757 125 LLIGAKPRGPGMERADLLDINGQIFADQGKAL-NAVA--SKNCKVLVVGNPCNT 175 (387)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhC--CCCeEEEEcCCcHHH
Confidence 9975 221 1 33444455 4443 467777777776653
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.003 Score=60.71 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=61.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCC---CCCeEEEEcCChh--hhhhcCcCC---------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLC---IPAQIIASAPSER--FKLHWPEPM---------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~---~~~~V~v~~r~~e--~~~~l~~~~---------g~-~~~s~~e~~~~aDv 127 (341)
+.||+|||+ |.+|+.++..|...+.+ ...+|.++|+++. +++...-++ .+ ...+..+.+++||+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 358999999 99999999999987754 2348999998653 222211111 11 23444678899999
Q ss_pred EEEee----ChHH------------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 128 VFLAM----KPQY------------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 128 IilaV----~~~~------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
||++- ++.. ++++...+ ..+. .++.++|-.++.++
T Consensus 82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i-~~~~--~~~~iiivvsNPvD 132 (325)
T cd01336 82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEAL-DKYA--KKNVKVLVVGNPAN 132 (325)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhC--CCCeEEEEecCcHH
Confidence 99875 1111 23344455 5443 35666666666554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0028 Score=63.26 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=60.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-Cc--cc---cChHH----HhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-DF--AL---NDNHR----IIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-g~--~~---~s~~e----~~~~aDvIilaV~ 133 (341)
+++|.|+|+|.+|..+++.|.+.|+ +|+++++++++.+.+.++. ++ .. .+... .+.++|.||++++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~----~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGY----SVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence 5789999999999999999999884 9999999999888776542 33 22 22221 2458999998887
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.+...-++..+ ...+ +..++++-+
T Consensus 307 ~~~~n~~~~~~-~~~~--~~~~ii~~~ 330 (453)
T PRK09496 307 DDEANILSSLL-AKRL--GAKKVIALV 330 (453)
T ss_pred CcHHHHHHHHH-HHHh--CCCeEEEEE
Confidence 65433333222 2334 444555433
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0031 Score=60.52 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=61.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh--hcCc---CCCc-c---ccChHHHhhcCCEEEEee--
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKL--HWPE---PMDF-A---LNDNHRIIKEAEYVFLAM-- 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~--~l~~---~~g~-~---~~s~~e~~~~aDvIilaV-- 132 (341)
.||+|||+ |++|+.++..|...+. ..++.++|+++...+ .|.. ...+ . ..+..+.++++|+||++.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~--~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPL--VSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 58999999 9999999999987775 358999998762211 1111 0111 1 223367899999999885
Q ss_pred --ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 --KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 --~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+|. . +.++.+.+ ..+ .++.+|+..++.+.
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i-~~~---~p~aivivvSNPvD 139 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAV-AKH---CPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEeCCCcc
Confidence 221 1 22333344 333 46778887778776
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.004 Score=60.28 Aligned_cols=77 Identities=8% Similarity=0.056 Sum_probs=52.1
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCC-c-cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMD-F-ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g-~-~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
.||||||+|.++.. .+..+...- +..+| .++++++++. .+.++++ + ...|.+++++ +.|+|++|+|+....
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~--~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~ 78 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK--DSWHVAHIFRRHAKPE-EQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHF 78 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC--CCEEEEEEEcCChhHH-HHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHH
Confidence 58999999998753 345453321 11355 5899987654 4445566 4 6678889886 579999999987655
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
++....
T Consensus 79 ~~~~~a 84 (344)
T PRK10206 79 EYAKRA 84 (344)
T ss_pred HHHHHH
Confidence 555443
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.003 Score=55.28 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCeEEEEcccHHHHHHHHHH-H-hcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSL-I-RTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L-~-~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
..++.+||+||+|++++..- . ++|+ .-+.++|.+++..-.-.....+ -.++.++.++ +.|+.|||||.....
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~---~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ 160 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGM---KIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQ 160 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCc---eEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHH
Confidence 46899999999999987652 2 3443 2456899988865443332233 3445556666 789999999998888
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
++.+.+
T Consensus 161 ~vad~L 166 (211)
T COG2344 161 EVADRL 166 (211)
T ss_pred HHHHHH
Confidence 877765
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0049 Score=52.97 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c-c-ccC-hHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F-A-LND-NHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~-~-~~s-~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.++|.|||.|.+|...++.|++.|. +|+++++ +..+.+.+ ++ + . ... .++.+.++|+||.++.++.+..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga----~V~VIsp--~~~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~ 85 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGA----FVTVVSP--EICKEMKE-LPYITWKQKTFSNDDIKDAHLIYAATNQHAVNM 85 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEcC--ccCHHHHh-ccCcEEEecccChhcCCCceEEEECCCCHHHHH
Confidence 4789999999999999999999984 9998864 33333332 22 1 1 111 1234678999999999887776
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
.+.+.
T Consensus 86 ~i~~~ 90 (157)
T PRK06719 86 MVKQA 90 (157)
T ss_pred HHHHH
Confidence 66544
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0029 Score=60.37 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|++||+|||+ |-.|..+.+.|.++.. -++.....+..+ .+ .+.++...++|++|+|+|...-.++.
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~---~~l~~~~s~~~~--~~--------~~~~~~~~~~DvvFlalp~~~s~~~~ 67 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSD---IELLSIPEAKRK--DA--------AARRELLNAADVAILCLPDDAAREAV 67 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCC---eEEEEEecCCCC--cc--------cCchhhhcCCCEEEECCCHHHHHHHH
Confidence 7889999996 9999999998877652 233333222111 11 12234557899999999999877777
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
.++ . ..+..||++++-
T Consensus 68 ~~~-~-----~~g~~VIDlSad 83 (313)
T PRK11863 68 ALI-D-----NPATRVIDASTA 83 (313)
T ss_pred HHH-H-----hCCCEEEECChh
Confidence 766 2 457789988653
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0032 Score=65.47 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC--hHHH-----hhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND--NHRI-----IKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s--~~e~-----~~~aDvIilaV~~ 134 (341)
..+|-|+|+|++|+.+++.|.++|+ ++++.|+|+++.+.+++ .|. ...| ..+. ++++|.+++++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM----RITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC----CEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 4579999999999999999999884 89999999999998876 564 2222 2222 4589999999987
Q ss_pred HHH-HHHHHHhhhcccccCCCcEEE
Q psy316 135 QYL-DSAIQGLVNDKVTLNSSRCII 158 (341)
Q Consensus 135 ~~v-~~vl~~i~~~~l~~~~~~iIV 158 (341)
+.. ..++... +.. .++.-|+
T Consensus 475 ~~~n~~i~~~~-r~~---~p~~~Ii 495 (601)
T PRK03659 475 PEDTMKIVELC-QQH---FPHLHIL 495 (601)
T ss_pred HHHHHHHHHHH-HHH---CCCCeEE
Confidence 543 3444444 443 3554444
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0017 Score=62.58 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~ 139 (341)
.++|.|+|+ |.||+.+++.|... | ..++++++|++++++.+.++++. ...+..+.+.++|+||.++.. ..+
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~g---v~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~-- 229 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTG---VAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV-- 229 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCC---CCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC--
Confidence 478999999 89999999999854 4 25899999999998888776543 333566788899999988853 221
Q ss_pred HHHHhhhcccccCCCcEEEEec
Q psy316 140 AIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
++. ...+ +++.++|+++
T Consensus 230 ~I~---~~~l--~~~~~viDiA 246 (340)
T PRK14982 230 EID---PETL--KKPCLMIDGG 246 (340)
T ss_pred cCC---HHHh--CCCeEEEEec
Confidence 011 1124 5667888774
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0039 Score=64.30 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=54.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC--hHHH-----hhcCCEEEEeeC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND--NHRI-----IKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s--~~e~-----~~~aDvIilaV~ 133 (341)
++-+|-|+|+|++|+.+++.|.+.|+ ++++.|+|+++.+.+++ .|. ...| ..+. ++++|.++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g~----~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAGI----PLVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 45679999999999999999999984 99999999999998876 464 2222 2222 458999999998
Q ss_pred hHH
Q psy316 134 PQY 136 (341)
Q Consensus 134 ~~~ 136 (341)
.+.
T Consensus 491 ~~~ 493 (558)
T PRK10669 491 NGY 493 (558)
T ss_pred ChH
Confidence 654
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0042 Score=63.01 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=61.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-ccC------------------------
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-LND------------------------ 117 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-~~s------------------------ 117 (341)
..|+.|+|+|.+|...++.+...|. +|+++++++++++.+++ +|. . ..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA----~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGA----IVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHH
Confidence 4689999999999999998888884 79999999988876655 554 1 111
Q ss_pred --hHHHhhcCCEEEEee-----ChH--HHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 118 --NHRIIKEAEYVFLAM-----KPQ--YLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 118 --~~e~~~~aDvIilaV-----~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+.++++|+||-++ |.. ..++.++. + +++.+||+++.
T Consensus 239 ~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~-----M--KpGsvIVDlA~ 285 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDS-----M--KAGSVIVDLAA 285 (511)
T ss_pred HHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhh-----C--CCCCEEEEeee
Confidence 223457899999988 322 23344443 4 67788887653
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0014 Score=61.59 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=52.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccChH--HHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALNDNH--RIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s~~--e~~~~aDvIilaV~~~ 135 (341)
.+++.|+|+|-.+.+++..|++.|. .+|+|+||+.+++++|++.++- ...... +...++|+||=|||..
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~---~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGA---KRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 3679999999999999999999995 6899999999999988765431 111111 1122689999998753
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0031 Score=60.99 Aligned_cols=71 Identities=25% Similarity=0.301 Sum_probs=46.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhc--------CCCCCCe-EEEEcCC----------hhhhhhcCcCCCc--c------c
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRT--------GLCIPAQ-IIASAPS----------ERFKLHWPEPMDF--A------L 115 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~--------G~~~~~~-V~v~~r~----------~e~~~~l~~~~g~--~------~ 115 (341)
|.+||+|||+|+||+.+++.|.+. |. ..+ +.+++++ .+++..+.++.+. . .
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~--~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 78 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGL--DLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGE 78 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCcccccc
Confidence 667999999999999999998765 21 124 3467753 3343333333332 1 2
Q ss_pred cChHHHhh--cCCEEEEeeChH
Q psy316 116 NDNHRIIK--EAEYVFLAMKPQ 135 (341)
Q Consensus 116 ~s~~e~~~--~aDvIilaV~~~ 135 (341)
.+..+++. +.|+|+.|+|+.
T Consensus 79 ~d~~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 79 ISGLEVIRSVDADVVVEATPTN 100 (341)
T ss_pred CCHHHHhhccCCCEEEECCcCc
Confidence 36677764 689999999863
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0056 Score=59.12 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-cCcC-CCccc--cChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-WPEP-MDFAL--NDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-l~~~-~g~~~--~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
++||+|+|+ |..|..+.+.|.+.++ +..++.... +.+++.+ +.-. ....+ .+..+ ++++|++|+|+|+....
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~h-P~~~l~~v~-s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~s~ 80 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDF-PVGTLHLLA-SSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAVSR 80 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCC-CceEEEEEE-CcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHHHH
Confidence 378999998 9999999999997764 333444332 2233321 1110 01212 12223 57899999999987766
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
+++..+ . ..+..||++++..
T Consensus 81 ~~v~~~----~--~~G~~VIDlS~~f 100 (336)
T PRK05671 81 SFAEKA----R--AAGCSVIDLSGAL 100 (336)
T ss_pred HHHHHH----H--HCCCeEEECchhh
Confidence 766655 2 4567889886543
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0045 Score=59.13 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=61.5
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh--cCcC-CCc-cc---c--ChHHHhhcCCEEEEeeC--
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH--WPEP-MDF-AL---N--DNHRIIKEAEYVFLAMK-- 133 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~--l~~~-~g~-~~---~--s~~e~~~~aDvIilaV~-- 133 (341)
||+|||+ |++|++++..|...++ ..++.++|+++...+. |..- ... +. . +..+.+++||+||++.-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~--~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY--VSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC--CcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 7999999 9999999999988875 3589999997622111 1110 011 11 1 22678999999998862
Q ss_pred --hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 134 --PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 134 --~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|. .++++.+.+ ..+ .++.+++..+++++.
T Consensus 79 ~~~g~~R~dll~~N~~I~~~i~~~i-~~~---~p~~iiivvsNPvDv 121 (312)
T TIGR01772 79 RKPGMTRDDLFNVNAGIVKDLVAAV-AES---CPKAMILVITNPVNS 121 (312)
T ss_pred CCCCccHHHHHHHhHHHHHHHHHHH-HHh---CCCeEEEEecCchhh
Confidence 21 123333444 443 467788888888764
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0036 Score=59.90 Aligned_cols=103 Identities=21% Similarity=0.259 Sum_probs=66.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----C---c--cccChHHH-hhcCCEEEEe
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----D---F--ALNDNHRI-IKEAEYVFLA 131 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g---~--~~~s~~e~-~~~aDvIila 131 (341)
|++||+|||+ |--|.-|.+.|..+-. .++..+..+...=+.+.+.+ | . ...++.++ .++||+||+|
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~---ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD---VELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLA 77 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC---eEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEe
Confidence 5789999988 9999999998887643 35655554332222222211 1 1 12233333 4469999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
+|...-.+++.++ + .++..||++++..- .+..++|.+
T Consensus 78 lPhg~s~~~v~~l----~--~~g~~VIDLSadfR~~d~~~ye~~Yg 117 (349)
T COG0002 78 LPHGVSAELVPEL----L--EAGCKVIDLSADFRLKDPEVYEKWYG 117 (349)
T ss_pred cCchhHHHHHHHH----H--hCCCeEEECCcccccCCHHHHHHhhC
Confidence 9999888888776 3 34666999877543 345566665
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0058 Score=58.98 Aligned_cols=92 Identities=9% Similarity=0.060 Sum_probs=60.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-CCccccCh-HHHhhcCCEEEEeeChHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-MDFALNDN-HRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-~g~~~~s~-~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+||+|||+ |..|..+.+.|.++++ +..++....+....-+.+.-. ..+...+. ...+.++|+||+|+|...-.++.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~h-p~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNF-PVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence 68999988 9999999999998775 333556555443332333210 11222222 23357899999999998888877
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
..+ + ..+.+||++++.
T Consensus 81 ~~~----~--~~G~~VIDlS~~ 96 (334)
T PRK14874 81 PKA----A--AAGAVVIDNSSA 96 (334)
T ss_pred HHH----H--hCCCEEEECCch
Confidence 665 3 456788887653
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0052 Score=54.95 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.+++.|...|. .+++++|++
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv---~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV---GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC---CeEEEecCC
Confidence 35689999999999999999999995 689999886
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.008 Score=58.35 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=58.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---C-----------Cc-cccChHHHhhcCC
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---M-----------DF-ALNDNHRIIKEAE 126 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~-----------g~-~~~s~~e~~~~aD 126 (341)
|++||+|+| .|.+|..+++.|.++. ..++....+++.+..+.... + .. ......+.+.++|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p---~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~D 78 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHP---WFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVD 78 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCC---CceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCC
Confidence 568999998 7999999999988654 24777664444433221110 0 11 1111234457899
Q ss_pred EEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 127 vIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+||+|+|.....++.+.+ . ..+..+|+.++
T Consensus 79 vVf~a~p~~~s~~~~~~~-~-----~~G~~vIDls~ 108 (349)
T PRK08664 79 IVFSALPSDVAGEVEEEF-A-----KAGKPVFSNAS 108 (349)
T ss_pred EEEEeCChhHHHHHHHHH-H-----HCCCEEEECCc
Confidence 999999998777776655 2 34566777755
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.019 Score=47.69 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=32.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
.||.|+|+|.+|+.+++.|...|. .+++++|.+.=....+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv---~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGV---GKITLVDDDIVEPSNL 42 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTT---SEEEEEESSBB-GGGC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCC---CceeecCCcceeeccc
Confidence 589999999999999999999996 6899998754333333
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.015 Score=53.82 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=64.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhh-----hhcC--cCCCc-cccChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQI-IASAPSERFK-----LHWP--EPMDF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~-----~~l~--~~~g~-~~~s~~e~~~~aDvIilaV 132 (341)
|+|||+|.|+ |+||+.+.+.+.+... .++ -.++|.+... ..+. ..+|+ +..+......++|++|=-+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~---~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT 77 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPD---LELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT 77 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCC---ceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC
Confidence 4689999999 9999999999887652 343 4567764322 1111 22455 5556666677999999877
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
.|....+.++-. .. .+-.+|| -+.|.+.+++++
T Consensus 78 ~P~~~~~~l~~~-~~----~~~~lVI-GTTGf~~e~~~~ 110 (266)
T COG0289 78 TPEATLENLEFA-LE----HGKPLVI-GTTGFTEEQLEK 110 (266)
T ss_pred CchhhHHHHHHH-HH----cCCCeEE-ECCCCCHHHHHH
Confidence 777776666544 22 1223455 457888776654
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0096 Score=57.68 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=59.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEE--cCChhhhhhcCcCCCccccC-hHHHhhcCCEEEEeeChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIAS--APSERFKLHWPEPMDFALND-NHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~--~r~~e~~~~l~~~~g~~~~s-~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++||+|||+ |..|..+.+.|.+.++ +..++... .|+..+.-.... ......+ ..+.+.++|+||+|+|...-.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~h-P~~~l~~las~rsaGk~~~~~~-~~~~v~~~~~~~~~~~D~vf~a~p~~~s~ 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDF-PYSSLKMLASARSAGKKVTFEG-RDYTVEELTEDSFDGVDIALFSAGGSISK 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCC-CcceEEEEEccCCCCCeeeecC-ceeEEEeCCHHHHcCCCEEEECCCcHHHH
Confidence 4579999988 9999999999988764 33344332 333322211111 1122211 224457899999999998877
Q ss_pred HHHHHhhhcccccCCCcEEEEecCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++..++ . ..+..||++++-
T Consensus 84 ~~~~~~----~--~~g~~VIDlS~~ 102 (344)
T PLN02383 84 KFGPIA----V--DKGAVVVDNSSA 102 (344)
T ss_pred HHHHHH----H--hCCCEEEECCch
Confidence 777665 2 457789988653
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.019 Score=57.26 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=51.3
Q ss_pred CeEEEEcccHH-HHHHHHHHHhcC-CCCCCeEEEEcCChhhhhhc-------CcCCC----c-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNM-AQAVATSLIRTG-LCIPAQIIASAPSERFKLHW-------PEPMD----F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~m-G~aia~~L~~~G-~~~~~~V~v~~r~~e~~~~l-------~~~~g----~-~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|.. .-.+.+.|++.. -++..+|.++|.++++++.+ .++.| + .++|.++++++||+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 68999999873 335666666554 25667999999999887642 22233 3 57889999999999999
Q ss_pred eeC
Q psy316 131 AMK 133 (341)
Q Consensus 131 aV~ 133 (341)
.+.
T Consensus 81 ~ir 83 (425)
T cd05197 81 QFR 83 (425)
T ss_pred eee
Confidence 874
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.017 Score=48.42 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=29.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
||.|||+|.+|+.++++|...|. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv---~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV---GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCC
Confidence 58999999999999999999996 6899998763
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >KOG2741|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=56.52 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=69.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc----cccChHHHhhcC--CEEEEeeChH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF----ALNDNHRIIKEA--EYVFLAMKPQ 135 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~----~~~s~~e~~~~a--DvIilaV~~~ 135 (341)
+..|+||+|+|.|+.-+++.|.-.-. ..+.| .+.+|+.+++..+++..++ ...+.++++++. |+|.+++|..
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~-s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPE-SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcc-cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 45689999999999999998854321 13455 4789999999988876655 567889998864 9999999854
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhc
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKL 173 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l 173 (341)
+..+++.-+ . . +..++++----.++.++.++.+
T Consensus 84 qH~evv~l~-l--~--~~K~VL~EKPla~n~~e~~~iv 116 (351)
T KOG2741|consen 84 QHYEVVMLA-L--N--KGKHVLCEKPLAMNVAEAEEIV 116 (351)
T ss_pred cHHHHHHHH-H--H--cCCcEEecccccCCHHHHHHHH
Confidence 444444333 1 1 2334555432334555555444
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0083 Score=59.84 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=48.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC----C--CCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGL----C--IPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~----~--~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~ 133 (341)
++|||+||+|++|+.+++.|.++.. . ...+ +.+++|++++.+.+.. .+. .+.+.++++. +.|+|+.+++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~-~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDL-PGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCC-cccceeCCHHHHhhCCCCCEEEECCC
Confidence 3689999999999999988765420 0 0113 4578998877654322 234 5677888886 4799999986
Q ss_pred h
Q psy316 134 P 134 (341)
Q Consensus 134 ~ 134 (341)
+
T Consensus 82 ~ 82 (426)
T PRK06349 82 G 82 (426)
T ss_pred C
Confidence 5
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0055 Score=53.51 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=29.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
||+|||+|.+|+.+++.|...|. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv---g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV---GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---CeEEEEeCCE
Confidence 68999999999999999999996 5788888764
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0034 Score=59.63 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=60.1
Q ss_pred EEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------Cc-cccChHHHhhcCCEEEEeeC----h
Q psy316 69 FIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------DF-ALNDNHRIIKEAEYVFLAMK----P 134 (341)
Q Consensus 69 iIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g~-~~~s~~e~~~~aDvIilaV~----~ 134 (341)
|||+|++|+.++..|...+++ .++.++|+++++++..+.++ .. +..+..+.+++||+||++.- |
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~--~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~ 78 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA--DEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKP 78 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC--CEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCC
Confidence 699999999999999888863 48999999876554322111 12 23345678999999999762 2
Q ss_pred H------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 Q------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 ~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. .++++.+.+ ..+ .++.+++..++..+
T Consensus 79 g~~R~dll~~N~~i~~~~~~~i-~~~---~p~~~vivvsNP~d 117 (299)
T TIGR01771 79 GETRLELVGRNVRIMKSIVPEV-VKS---GFDGIFLVATNPVD 117 (299)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEeCCHHH
Confidence 1 133444455 443 46667776766554
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.01 Score=57.13 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=55.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc-ChHHH---h-hcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN-DNHRI---I-KEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~-s~~e~---~-~~aDvIilaV~~~~v 137 (341)
.+|+|+|+|-+|..-.+-....|. +|++++|++++++..++ +|. ..+ +..+. + +.+|+||.++++..+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga----~Via~~~~~~K~e~a~~-lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~~ 242 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGA----EVIAITRSEEKLELAKK-LGADHVINSSDSDALEAVKEIADAIIDTVGPATL 242 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC----eEEEEeCChHHHHHHHH-hCCcEEEEcCCchhhHHhHhhCcEEEECCChhhH
Confidence 689999999988866666555774 99999999999877666 775 222 11222 2 239999999997777
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
...++-+
T Consensus 243 ~~~l~~l 249 (339)
T COG1064 243 EPSLKAL 249 (339)
T ss_pred HHHHHHH
Confidence 7777766
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.015 Score=58.44 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=59.6
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHH
Q psy316 63 MWTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
-.++|+|||+ |++|..+.++|.+.|+ ..+|+..+++.. +-.|+ ...+..++-...|+++++||+..+
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf--~g~v~~Vnp~~~------~i~G~~~~~sl~~lp~~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGY--KGKIYPVNPKAG------EILGVKAYPSVLEIPDPVDLAVIVVPAKYV 77 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCC--CCcEEEECCCCC------ccCCccccCCHHHCCCCCCEEEEecCHHHH
Confidence 3578999999 8999999999999985 236777766532 11466 677788877789999999999999
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.++++++
T Consensus 78 ~~~l~e~ 84 (447)
T TIGR02717 78 PQVVEEC 84 (447)
T ss_pred HHHHHHH
Confidence 9999887
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0085 Score=62.61 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=58.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC--hHHH-----hhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND--NHRI-----IKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s--~~e~-----~~~aDvIilaV~~ 134 (341)
..+|-|+|+|++|+.+++.|.+.|. ++++.|.|+++.+.+++ .|. ...| ..+. ++++|.+++++.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~----~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV----KMTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC----CEEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCC
Confidence 4579999999999999999999884 89999999999998876 465 2222 1222 4589999999986
Q ss_pred HH-HHHHHHHhhhcc
Q psy316 135 QY-LDSAIQGLVNDK 148 (341)
Q Consensus 135 ~~-v~~vl~~i~~~~ 148 (341)
+. ...++... +..
T Consensus 475 ~~~n~~i~~~a-r~~ 488 (621)
T PRK03562 475 PQTSLQLVELV-KEH 488 (621)
T ss_pred HHHHHHHHHHH-HHh
Confidence 44 33444444 443
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0039 Score=58.78 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=38.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP 110 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~ 110 (341)
.+++.|+|+|-.|++++..|.+.|. .+|++++|++++++.+.+.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~---~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGV---QKLQVADLDTSRAQALADV 170 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHH
Confidence 3679999999999999999999885 5899999999998887653
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.022 Score=57.00 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=50.3
Q ss_pred CeEEEEcccHH-HHHHHHHHHhcC-CCCCCeEEEEcCChhhhhhcC-------cCCC----c-cccChHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNM-AQAVATSLIRTG-LCIPAQIIASAPSERFKLHWP-------EPMD----F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~m-G~aia~~L~~~G-~~~~~~V~v~~r~~e~~~~l~-------~~~g----~-~~~s~~e~~~~aDvIil 130 (341)
|||+|||+|.. +-.+.+.|++.. .++..+|.++|.++++++.+. ++.| + .++|..++++.||+||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 69999999874 224556666552 245679999999998876532 2223 3 57889999999999999
Q ss_pred eeC
Q psy316 131 AMK 133 (341)
Q Consensus 131 aV~ 133 (341)
.+.
T Consensus 81 ~ir 83 (437)
T cd05298 81 QIR 83 (437)
T ss_pred Eee
Confidence 874
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >KOG2666|consensus | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.29 Score=46.47 Aligned_cols=104 Identities=24% Similarity=0.364 Sum_probs=70.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----------------C--c-cccChHHHhhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----------------D--F-ALNDNHRIIKEA 125 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----------------g--~-~~~s~~e~~~~a 125 (341)
+||.-||+|-.|..-..-+.- . +|.-+|++.|.+..+...+.... | + ..++.+..++++
T Consensus 2 ~kiccigagyvggptcavia~-k-cp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ea 79 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIAL-K-CPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA 79 (481)
T ss_pred ceEEEecCcccCCcchheeee-c-CCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhc
Confidence 689999999999876654432 2 56678999999988888776531 1 2 456778889999
Q ss_pred CEEEEeeC-h-H-------------HHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 126 EYVFLAMK-P-Q-------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 126 DvIilaV~-~-~-------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
|+||++|. | + .++++.+-+ .+.- ...++|+-- +.++ .+.++..+.
T Consensus 80 dlvfisvntptkt~g~gkg~aadlky~es~ar~i-a~~s--~~~kivvek-stvpv~aaesi~~il~ 142 (481)
T KOG2666|consen 80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMI-ADVS--VSDKIVVEK-STVPVKAAESIEKILN 142 (481)
T ss_pred ceEEEEecCCcccccCCCCcccchhHHHHHHHHH-HHhc--cCCeEEEee-ccccchHHHHHHHHHh
Confidence 99999983 2 1 134444545 5554 567788754 3444 356666665
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=56.97 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=60.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC--ChhhhhhcCcCCCccccChHHH-hhcCCEEEEeeChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP--SERFKLHWPEPMDFALNDNHRI-IKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r--~~e~~~~l~~~~g~~~~s~~e~-~~~aDvIilaV~~~~v~ 138 (341)
.++||+|||+ |..|.-+.+.|.++.| |..++..... +..+.-.+..+ .+.+.+.++. ..++|++|+|+|...-.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~h-P~~~l~~laS~~saG~~~~~~~~-~~~v~~~~~~~~~~~Dvvf~a~p~~~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQF-PVGELYALASEESAGETLRFGGK-SVTVQDAAEFDWSQAQLAFFVAGREASA 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCC-CceEEEEEEccCcCCceEEECCc-ceEEEeCchhhccCCCEEEECCCHHHHH
Confidence 4679999998 9999999998887543 4456654432 22221122221 2322233333 26899999999998777
Q ss_pred HHHHHhhhcccccCCCcEEEEecCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++..++ . ..+..||++++.
T Consensus 81 ~~~~~~----~--~~g~~VIDlS~~ 99 (336)
T PRK08040 81 AYAEEA----T--NAGCLVIDSSGL 99 (336)
T ss_pred HHHHHH----H--HCCCEEEECChH
Confidence 777665 3 457789988653
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.012 Score=59.91 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc--cC---------------hH------
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL--ND---------------NH------ 119 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~--~s---------------~~------ 119 (341)
..|+.|||+|.+|...++.+...|. +|+++|+++++++..++ +|. .. +. ..
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA----~V~a~D~~~~rle~aes-lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGA----IVRAFDTRPEVAEQVES-MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 5689999999999999888888884 79999999999887766 675 11 11 01
Q ss_pred ----HHhhcCCEEEEeeC------hHHH-HHHHHHhhhcccccCCCcEEEEec
Q psy316 120 ----RIIKEAEYVFLAMK------PQYL-DSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 120 ----e~~~~aDvIilaV~------~~~v-~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+.++.+|+||-|+- |..+ ++.++.+ +++.+|+.+.
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~m-------kpGgvIVdvg 285 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASM-------KPGSVIVDLA 285 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhc-------CCCCEEEEEc
Confidence 11246999999984 2232 5555554 5677777664
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.024 Score=50.87 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=51.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-c-c-cChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-A-L-NDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~-~-~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.+++.|||.|.+|..-++.|++.|. +|++++.+.. .++.+.++..+ . . .-..+.+..+|+||.|+....+..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga----~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~ 84 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGA----QLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNR 84 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC----EEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHH
Confidence 4689999999999999999999994 8999987543 34445443233 1 1 112345789999999998765444
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.019 Score=57.20 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=49.1
Q ss_pred CeEEEEcccHHHH-HHHHHHHhc-CCCCCCeEEEEcCC-hhhhhhcC-------cCCC----c-cccChHHHhhcCCEEE
Q psy316 65 TKVGFIGAGNMAQ-AVATSLIRT-GLCIPAQIIASAPS-ERFKLHWP-------EPMD----F-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~mG~-aia~~L~~~-G~~~~~~V~v~~r~-~e~~~~l~-------~~~g----~-~~~s~~e~~~~aDvIi 129 (341)
|||+|||+|..-+ .+.+.|++. ..++..+|.++|.+ +++++... ++.| + .+++..+++.+||+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 6899999998643 455666653 22455789999999 78865321 2223 3 5678999999999999
Q ss_pred Eee
Q psy316 130 LAM 132 (341)
Q Consensus 130 laV 132 (341)
.+.
T Consensus 81 ~~~ 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
Confidence 987
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0072 Score=58.12 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=46.1
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC------------------Cc-cccChHHHhhcCC
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM------------------DF-ALNDNHRIIKEAE 126 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~------------------g~-~~~s~~e~~~~aD 126 (341)
|||+|+|+||..+++.+.+.. .-+| .+.+.+++....++..+ ++ ...+++++...+|
T Consensus 1 VaInG~GrIGr~varav~~~~---d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD 77 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD---DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD 77 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC---CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence 689999999999999987643 2344 46777777543333222 23 3456788888999
Q ss_pred EEEEeeCh
Q psy316 127 YVFLAMKP 134 (341)
Q Consensus 127 vIilaV~~ 134 (341)
+|+.|+|.
T Consensus 78 iVve~Tp~ 85 (333)
T TIGR01546 78 IVVDATPG 85 (333)
T ss_pred EEEECCCC
Confidence 99999985
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0068 Score=56.80 Aligned_cols=66 Identities=24% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
.+++.|+|+|-.|.+++..|.+.|. .+|++++|++++++.+.+.++. ...+. ....+|+||=|+|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~---~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGF---TDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcc
Confidence 3579999999999999999999885 5799999999999888765443 11111 11347888887764
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.14 Score=46.11 Aligned_cols=168 Identities=14% Similarity=0.229 Sum_probs=97.9
Q ss_pred Cc-cccChHHHhhcCCEEEEeeChHHH-HHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEE
Q psy316 112 DF-ALNDNHRIIKEAEYVFLAMKPQYL-DSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRV 189 (341)
Q Consensus 112 g~-~~~s~~e~~~~aDvIilaV~~~~v-~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~ 189 (341)
|+ ++++..|++.++|+|+.=+|-..+ .++++.+ .+-+ .++.+|-+ +..++..++.+.+..... .+-. +-..
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikkf-iddi--pegaivth-actipttkf~kifed~gr--edln-vtsy 198 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKKF-IDDI--PEGAIVTH-ACTIPTTKFKKIFEDMGR--EDLN-VTSY 198 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHHH-HhcC--CCCceEee-ecccchHHHHHHHHHhCc--cccc-eecc
Confidence 45 566778899999999988864322 2344444 3334 66766554 456777777666542110 2233 4455
Q ss_pred cCCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhc-CCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHH-HcC
Q psy316 190 MPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQG-GIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAV-KQG 267 (341)
Q Consensus 190 mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~l-G~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~-~~G 267 (341)
+|..-.+ .+|...+..|- .++ +..+.+.+|=+.. |..+.++..++..++-+++...+.+|.-+-+..++.. -+|
T Consensus 199 hpg~vpe-mkgqvyiaegy-ase--eavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivyagll~yrdavt~ilg 274 (343)
T COG4074 199 HPGTVPE-MKGQVYIAEGY-ASE--EAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVYAGLLTYRDAVTDILG 274 (343)
T ss_pred CCCCCcc-ccCcEEEeccc-ccH--HHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5543222 34555555553 345 6666665555443 5566677777766666655545555544445555543 468
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Q psy316 268 IPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 268 l~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
-|.+-++.+..+.+.-...++++
T Consensus 275 apadfaqmma~eal~qi~~lmee 297 (343)
T COG4074 275 APADFAQMMAVEALQQIAKLMEE 297 (343)
T ss_pred CchhHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777666666655
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.033 Score=49.66 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=31.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...||.|||+|.+|+.++++|..+|. .+++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GV---g~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGI---GSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCC---CEEEEEECCc
Confidence 35789999999999999999999996 6899998653
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0057 Score=52.95 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=58.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC--ccc--------------------c----C
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD--FAL--------------------N----D 117 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g--~~~--------------------~----s 117 (341)
+.||.|+|+|+.|..-++.+...|. ++++++.++++.+++..... +.. . .
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa----~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGA----EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-----EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCC----EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3689999999999999999999885 99999999887776554221 111 1 1
Q ss_pred hHHHhhcCCEEEEee--ChHHHHHHH-HHhhhcccccCCCcEEEEecC
Q psy316 118 NHRIIKEAEYVFLAM--KPQYLDSAI-QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 118 ~~e~~~~aDvIilaV--~~~~v~~vl-~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+.++.+|+||.+. +......++ ++. ...+ +++.+|++++.
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~-~~~m--~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEM-VKSM--KPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHH-HHTS--STTEEEEETTG
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHH-hhcc--CCCceEEEEEe
Confidence 234577899999865 222222222 222 2334 68889998754
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.017 Score=52.06 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=30.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..+|.|||+|.+|+.++..|...|. .+++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv---g~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV---GNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 4689999999999999999999996 579999886
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.023 Score=55.00 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=31.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.++..|..+|. .+|+++|++
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv---g~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV---GKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 45789999999999999999999996 689999876
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0073 Score=54.70 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=63.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh----------hhhhhcCcCCCc-cc-----cChHHHh-hcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE----------RFKLHWPEPMDF-AL-----NDNHRII-KEA 125 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~----------e~~~~l~~~~g~-~~-----~s~~e~~-~~a 125 (341)
+.++|+|.|+|++|+.+++.|.+.|. ..|.++|.+. +.++...+..++ .. .+..++. .+|
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~---~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGG---KVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 46899999999999999999999984 4677899887 655544432222 11 1223332 379
Q ss_pred CEEEEeeChHHHHH-HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 126 EYVFLAMKPQYLDS-AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 126 DvIilaV~~~~v~~-vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
|++|.|...+.+.. ...+ + + -++|+--+++-....-.+.|.
T Consensus 99 DVlipaA~~~~i~~~~a~~-----l--~-a~~V~e~AN~p~t~~a~~~L~ 140 (217)
T cd05211 99 DIFAPCALGNVIDLENAKK-----L--K-AKVVAEGANNPTTDEALRILH 140 (217)
T ss_pred cEEeeccccCccChhhHhh-----c--C-ccEEEeCCCCCCCHHHHHHHH
Confidence 99999988764332 2222 3 2 356776655433334444454
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.015 Score=56.29 Aligned_cols=89 Identities=10% Similarity=0.086 Sum_probs=58.2
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC-hHHHhhcCCEEEEeeChHHHHHHH
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND-NHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s-~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
||+|||+ |..|..+++.|.++++ +..++.+..+....-+.+.- .|. ...+ ..+.+.++|++|+|++...-.++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~h-p~~~l~~~as~~~~g~~~~~-~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF-PIDKLVLLASDRSAGRKVTF-KGKELEVNEAKIESFEGIDIALFSAGGSVSKEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCC-ChhhEEEEeccccCCCeeee-CCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHH
Confidence 6899995 9999999999988775 33445555444333223322 122 2211 134457899999999998877777
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+ + ..+..||+..+
T Consensus 79 ~~~----~--~~G~~VID~ss 93 (339)
T TIGR01296 79 PKA----A--KCGAIVIDNTS 93 (339)
T ss_pred HHH----H--HCCCEEEECCH
Confidence 655 3 45668888754
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0079 Score=56.84 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=36.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhhhcCcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKLHWPEP 110 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~~l~~~ 110 (341)
+++.|||+|-.+++++..|...|. .+|++++|++ ++++.++++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~---~~i~i~nRt~~~~~ka~~la~~ 170 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGL---KEIKLFNRRDEFFDKALAFAQR 170 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC---CEEEEEeCCccHHHHHHHHHHH
Confidence 579999999999999999998884 6899999995 477766553
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.013 Score=55.19 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||.|. +|..++..|.+.|. .|+++++.. .+..+.+++||+||.|++...+ +.
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~ga----tVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~---i~ 216 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNA----SVTILHSRS--------------KDMASYLKDADVIVSAVGKPGL---VT 216 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCC----eEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcc---cC
Confidence 57999999988 99999999998884 899887642 1456778999999999964332 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 217 ---~~~v--k~gavVIDv 229 (286)
T PRK14175 217 ---KDVV--KEGAVIIDV 229 (286)
T ss_pred ---HHHc--CCCcEEEEc
Confidence 1235 678888887
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0093 Score=57.45 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV 132 (341)
.+++.|||+|.||...+++|.++|. .+|++++|+.+. .. ++-......+....+|+||.|+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~---~~i~v~nRt~~~-~~----~~~~~~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGY---SRITFCSRQQLT-LP----YRTVVREELSFQDPYDVIFFGS 234 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCC---CEEEEEcCCccc-cc----hhhhhhhhhhcccCCCEEEEcC
Confidence 5799999999999999999999985 589999999753 11 2110001113346889999873
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.025 Score=53.58 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=27.0
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP 99 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r 99 (341)
||.|||+|.+|+.+++.|...|. .+|+++|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV---g~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV---RHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEECC
Confidence 68999999999999999999996 56777664
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0092 Score=59.24 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=44.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
.+|.|||.|.+|.++|+.|.+.|. +|+++|+++........ ..- ...+.....+++|++|.+.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~----~V~g~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGV----YVIGVDKSLEALQSCPY-IHERYLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCC----EEEEEeCCccccchhHH-HhhhhcCCcHHHhcCCCEEEECCC
Confidence 579999999999999999999984 89999987654332100 000 11233334467999988874
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0098 Score=47.24 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=49.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
.+++.|||.|.+|..=++.|++.|. +|+++.++.+..+.. .........+.+..+|+||.|+.+..+.+.+.+
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA----~v~vis~~~~~~~~~---i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~ 79 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGA----KVTVISPEIEFSEGL---IQLIRREFEEDLDGADLVFAATDDPELNEAIYA 79 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTB----EEEEEESSEHHHHTS---CEEEESS-GGGCTTESEEEE-SS-HHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEECCchhhhhhH---HHHHhhhHHHHHhhheEEEecCCCHHHHHHHHH
Confidence 4689999999999999999999984 999998874222211 111111223557889999999988776665544
Q ss_pred h
Q psy316 144 L 144 (341)
Q Consensus 144 i 144 (341)
.
T Consensus 80 ~ 80 (103)
T PF13241_consen 80 D 80 (103)
T ss_dssp H
T ss_pred H
Confidence 4
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.15 Score=49.84 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=91.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcCC----------------C---c--cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEPM----------------D---F--ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~~----------------g---~--~~~s~~ 119 (341)
.+|.|+|+|..+--+|..+.+.+. .+|-+.+|.-.+.++ +++.- | + ...+.+
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~---~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGN---CRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccC---ceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHH
Confidence 479999999999999998887763 579899886555443 33210 1 1 234456
Q ss_pred HHhhcCCEEEEeeChHHHHHHHHHhhhc-ccccCCCcEEEEecCCCCHHHH-HHhccccCCCCCCCCeEEEEc-------
Q psy316 120 RIIKEAEYVFLAMKPQYLDSAIQGLVND-KVTLNSSRCIISMLVGVDLETL-KKKLSVLVPNPNDAPTIIRVM------- 190 (341)
Q Consensus 120 e~~~~aDvIilaV~~~~v~~vl~~i~~~-~l~~~~~~iIVs~~agi~~~~l-~~~l~~~~~~~~~~~~vvr~m------- 190 (341)
++..+=|.+|+|||.++..+|+++| .+ .| +.=+-||=++.......+ +..+.... .+.. |+.+.
T Consensus 79 ~i~g~WdtlILavtaDAY~~VL~ql-~~~~L--~~vk~iVLvSPtfGS~~lv~~~l~~~~---~~~E-VISFStY~gdTr 151 (429)
T PF10100_consen 79 EIEGEWDTLILAVTADAYLDVLQQL-PWEVL--KRVKSIVLVSPTFGSHLLVKGFLNDLG---PDAE-VISFSTYYGDTR 151 (429)
T ss_pred HhcccccEEEEEechHHHHHHHHhc-CHHHH--hhCCEEEEECcccchHHHHHHHHHhcC---CCce-EEEeecccccce
Confidence 6777889999999999999999987 43 33 222333334445554433 22332100 1122 22211
Q ss_pred ---CCchhhh-cCc--eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE-cC
Q psy316 191 ---PNTAMKY-GKG--ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI-IP 234 (341)
Q Consensus 191 ---pn~p~~v-~~g--~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~-v~ 234 (341)
...|-.+ -.| ..+..+...... ....++..+|+.+|.... ++
T Consensus 152 ~~d~~~~~~vlt~~vK~kiYigSt~~~s--~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 152 WSDGEQPNRVLTTAVKKKIYIGSTHSNS--PELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred eccCCCcceehhhhhhceEEEEeCCCCC--hHHHHHHHHHHHcCCeEEEeC
Confidence 0111010 011 122222223334 788899999999998654 44
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.031 Score=54.55 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=58.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh---cCcCCCcccc-ChHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH---WPEPMDFALN-DNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~---l~~~~g~~~~-s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++|+|||+ |..|.-|.+.|+.+..++-.++..+..+ +.... +..+...... ...+...++|++|+|+|...-.+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~ 80 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNE 80 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHH
Confidence 68999998 9999999987776655554456665432 22222 2221111211 11244578999999999988777
Q ss_pred HHHHhhhcccccCCC--cEEEEecC
Q psy316 140 AIQGLVNDKVTLNSS--RCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~--~iIVs~~a 162 (341)
+..++ . ..| .+||+.++
T Consensus 81 ~~~~~-~-----~aG~~~~VID~Ss 99 (369)
T PRK06598 81 VYPKL-R-----AAGWQGYWIDAAS 99 (369)
T ss_pred HHHHH-H-----hCCCCeEEEECCh
Confidence 77665 3 345 56888754
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.044 Score=52.97 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=60.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh--------cCCCCCCe-EEEEcCChhh----------hhhcCcCCCc--cc------
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIR--------TGLCIPAQ-IIASAPSERF----------KLHWPEPMDF--AL------ 115 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~--------~G~~~~~~-V~v~~r~~e~----------~~~l~~~~g~--~~------ 115 (341)
|.++|+++|+|++|+.+++.|.+ .|. ..+ +.+.+++... +....++.+. ..
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~--~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGV--ELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCC--CEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 56899999999999999998876 342 113 3456654221 1111121221 11
Q ss_pred --cChHHHh--hcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCC---CCHHHHHHhc
Q psy316 116 --NDNHRII--KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVG---VDLETLKKKL 173 (341)
Q Consensus 116 --~s~~e~~--~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~ag---i~~~~l~~~l 173 (341)
.+..+.+ .++|+||-++.+....+++... + ..++-||+...+ ...+++.+..
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~a----l--~~G~~VVtanK~~la~~~~el~~la 137 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEA----L--KEGKSVVTSNKPPIAFHYDELLDLA 137 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHH----H--hhCCcEEECCHHHHHhCHHHHHHHH
Confidence 1456666 4799999999887777766554 4 455556655444 3344554443
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.02 Score=52.04 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...||.|||+|.+|+.+++.|...|. .+++++|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv---g~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV---GKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCE
Confidence 45789999999999999999999996 6888887653
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0095 Score=56.28 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=35.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhhhcCc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~~l~~ 109 (341)
.+++.|+|+|.+|.+++..|.+.|. .+|++++|++ ++++.+.+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~---~~V~I~~R~~~~~~~a~~l~~ 171 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGA---KEITIFNIKDDFYERAEQTAE 171 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEEeCCchHHHHHHHHHH
Confidence 4578899999999999999999985 4699999996 56655443
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.024 Score=54.91 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEc--CChhhhhhcCcCCCc-c-ccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASA--PSERFKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~--r~~e~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.+||||||+ |..|..|.+.|.++-.++-.++.+.. |+..+.-.+..+ .+ . ..+. +.+.+.|++|+|+|...-.
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~~~~~-~~~~~~Divf~a~~~~~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQEAKI-NSFEGVDIAFFSAGGEVSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc-ceEEEeCCH-HHhcCCCEEEECCChHHHH
Confidence 368999998 99999999988865444434454433 332222222221 22 1 1233 3457899999999998777
Q ss_pred HHHHHhhhcccccCCCcEEEEecCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++...+ . ..+..||+.++-
T Consensus 83 ~~~~~~----~--~~G~~VID~Ss~ 101 (347)
T PRK06728 83 QFVNQA----V--SSGAIVIDNTSE 101 (347)
T ss_pred HHHHHH----H--HCCCEEEECchh
Confidence 777665 2 467889988553
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0097 Score=54.28 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=60.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcC----------ChhhhhhcCcCCCc--cc-----cChHHHh-h
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAP----------SERFKLHWPEPMDF--AL-----NDNHRII-K 123 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r----------~~e~~~~l~~~~g~--~~-----~s~~e~~-~ 123 (341)
+.++|+|.|.|++|+.+++.|.+.|. +|+ +.|. +.+.+..++++.|. .. .++.++. .
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~----~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~ 105 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGA----KVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL 105 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee
Confidence 56899999999999999999999985 665 7777 55555544443331 11 1223333 2
Q ss_pred cCCEEEEeeChHHHH-HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 124 EAEYVFLAMKPQYLD-SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 124 ~aDvIilaV~~~~v~-~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+|||++-|.+...+. +.+..+ + -++|+--+++--...-.+.|.
T Consensus 106 ~~Dvlip~a~~~~i~~~~~~~l-------~-a~~I~egAN~~~t~~a~~~L~ 149 (227)
T cd01076 106 DCDILIPAALENQITADNADRI-------K-AKIIVEAANGPTTPEADEILH 149 (227)
T ss_pred cccEEEecCccCccCHHHHhhc-------e-eeEEEeCCCCCCCHHHHHHHH
Confidence 789999998766542 233333 2 346665554322233344444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.043 Score=48.90 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...||.|||+|.+|+.++++|..+|. .+++++|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV---g~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI---DSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEECCc
Confidence 35789999999999999999999996 6899998753
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.016 Score=58.49 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=50.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc-c-ChHHHhhcCCEEEEe--eChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL-N-DNHRIIKEAEYVFLA--MKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~-~-s~~e~~~~aDvIila--V~~~ 135 (341)
.+||.|+|+|..|.++++.|.+.|. +|+++|+++.....+.++.|+ .. . ...+.+.++|+||.+ +|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~----~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGC----DVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD 87 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCC----EEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence 4579999999999999999999994 899999876655444333576 32 2 234556789999876 4543
|
|
| >KOG0068|consensus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.02 Score=54.57 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=68.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
.+++|+||+|++|+-++..+..-|. .++.+|. .+. +...+ +|+...+.+|++..||+|=+=+|- ...+.++
T Consensus 146 GKTLgvlG~GrIGseVA~r~k~~gm----~vI~~dpi~~~--~~~~a-~gvq~vsl~Eil~~ADFitlH~PLtP~T~~li 218 (406)
T KOG0068|consen 146 GKTLGVLGLGRIGSEVAVRAKAMGM----HVIGYDPITPM--ALAEA-FGVQLVSLEEILPKADFITLHVPLTPSTEKLL 218 (406)
T ss_pred ccEEEEeecccchHHHHHHHHhcCc----eEEeecCCCch--HHHHh-ccceeeeHHHHHhhcCEEEEccCCCcchhhcc
Confidence 3789999999999999999888775 6666664 322 22333 687556789999999999998883 3445555
Q ss_pred HH-hhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 QG-LVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 ~~-i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
.. . ...+ ++|.-||.++-|- +...|-+.+.
T Consensus 219 n~~t-fA~m--KkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 219 NDET-FAKM--KKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred CHHH-HHHh--hCCcEEEEecCCceechHHHHHHHh
Confidence 22 1 1234 6788889887543 3444444443
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.039 Score=53.39 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=54.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCC-------------Cccc-cChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPM-------------DFAL-NDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~-------------g~~~-~s~~e~~~~aDvI 128 (341)
+||+|+|+ |.||..+++.|..+.. .+|. ++++++..-+.+.+.+ ...+ ....+...++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~---~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPY---FELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---ceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEE
Confidence 58999996 9999999998877652 2554 4454433222222111 0111 1122345789999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
|+|+|.....++...+ . ..+..+|+.++
T Consensus 78 f~a~p~~~s~~~~~~~-~-----~~G~~VIDlsg 105 (341)
T TIGR00978 78 FSALPSEVAEEVEPKL-A-----EAGKPVFSNAS 105 (341)
T ss_pred EEeCCHHHHHHHHHHH-H-----HCCCEEEECCh
Confidence 9999998777776554 2 34556676644
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.014 Score=55.13 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=77.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---c-c---cChHHHhhcCCEEEEee--ChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---A-L---NDNHRIIKEAEYVFLAM--KPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~-~---~s~~e~~~~aDvIilaV--~~~ 135 (341)
-|+.|||.|-.|+.-|+-..--| .+|++.++|.+++..+...++. . . .+.++.+..+|+||=+| |-.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg----A~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG----ADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred ccEEEECCccccchHHHHHhccC----CeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 48999999999998888766555 4999999999999988776653 1 1 23466788999999887 311
Q ss_pred HHH-HHHHHhhhcccccCCCcEEEEecC--CCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 136 YLD-SAIQGLVNDKVTLNSSRCIISMLV--GVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 136 ~v~-~vl~~i~~~~l~~~~~~iIVs~~a--gi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
... =+.+++ ...+ +++.+||+++- |-.+++... ...-.|......++-.+.||.|.++-
T Consensus 245 kaPkLvt~e~-vk~M--kpGsVivDVAiDqGGc~Et~~~-TTh~~PtY~~~gvvhY~VaNmPgaVp 306 (371)
T COG0686 245 KAPKLVTREM-VKQM--KPGSVIVDVAIDQGGCFETSHP-TTHDDPTYEVDGVVHYGVANMPGAVP 306 (371)
T ss_pred CCceehhHHH-HHhc--CCCcEEEEEEEcCCCceecccc-ccCCCCceeecCEEEEecCCCCcccc
Confidence 111 122333 3344 78999998752 333555421 11000110011103356788887653
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.032 Score=51.42 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=30.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.+++.|...|. .+++++|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv---g~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV---GTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCC
Confidence 45789999999999999999999996 578887764
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.039 Score=50.72 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=34.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
..||.|+|+|.+|+.++..|...|. .+++++|.+.-....|.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV---GNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC---CEEEEEeCCcccccCcc
Confidence 4689999999999999999999996 68999888654443443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.18 Score=46.24 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=28.3
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
||.+||+|.+|+.+++.|...|+ .+++++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv---g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF---GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 68999999999999999999996 578887764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.054 Score=49.48 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
...||.|||+|.+|+.++..|...|. .+++++|.+.-....+..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lvD~D~ve~sNL~R 69 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGV---GRILLIDEQTPELSNLNR 69 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCccChhhhcc
Confidence 35689999999999999999999996 689999876544444443
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.1 Score=46.96 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=54.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-cccC--hHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-ALND--NHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~~~s--~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.+++.|||.|..|..=++.|++.|. +|+++.... ..+..+.++.++ .... ..+.+..+++||.|+.+..+.+
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga----~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~ 87 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGA----DVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNE 87 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC----EEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHH
Confidence 4789999999999999999999994 899887655 445555544343 1111 1233455999999999877666
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
-+.+.
T Consensus 88 ~i~~~ 92 (210)
T COG1648 88 RIAKA 92 (210)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.029 Score=55.00 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.++..|...|. .+++++|++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv---g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV---GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC---CeEEEEeCC
Confidence 45789999999999999999999996 589999886
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.048 Score=51.93 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=54.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.||+|+|+ |-.|.-+.+.|..+-. -++. +..++ + +.. .+.+++++++|++|+|+|.....+...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~---~el~~l~s~~--~---~~~------~~~~~~~~~~D~vFlalp~~~s~~~~~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDD---IELLSIAPDR--R---KDA------AERAKLLNAADVAILCLPDDAAREAVS 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCC---eEEEEEeccc--c---cCc------CCHhHhhcCCCEEEECCCHHHHHHHHH
Confidence 58999987 9999999998887642 2333 33332 1 111 134456678999999999988777776
Q ss_pred HhhhcccccCCCcEEEEecC
Q psy316 143 GLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~a 162 (341)
.+ . ..+..||++++
T Consensus 68 ~~----~--~~g~~VIDlSa 81 (310)
T TIGR01851 68 LV----D--NPNTCIIDAST 81 (310)
T ss_pred HH----H--hCCCEEEECCh
Confidence 65 2 45778898754
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.034 Score=56.42 Aligned_cols=66 Identities=20% Similarity=0.120 Sum_probs=50.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc--cChHHHhhcCCEEEEee
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL--NDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~--~s~~e~~~~aDvIilaV 132 (341)
...++|.|+|+|..|.+.++.|.+.|. +|+++|++++..+.+.+ .|+ .. ....+.+.++|+||.+-
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~----~v~~~D~~~~~~~~l~~-~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA----RPTVCDDDPDALRPHAE-RGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHh-CCCEEEcCcchHhHhhcCCEEEECC
Confidence 345789999999999999998888884 99999988766655544 576 32 23345577899999875
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.036 Score=50.00 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=47.2
Q ss_pred EEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChh--hhhhcCcCCCc--c---cc---ChHHHhhcCCEEEEeeC
Q psy316 67 VGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSER--FKLHWPEPMDF--A---LN---DNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 67 IgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e--~~~~l~~~~g~--~---~~---s~~e~~~~aDvIilaV~ 133 (341)
|.|+|+ |++|+.+++.|++.+ ++|.+..|++. ..+.+.+ .|+ + .. +..++++.+|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~----~~V~~l~R~~~~~~~~~l~~-~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG----FSVRALVRDPSSDRAQQLQA-LGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT----GCEEEEESSSHHHHHHHHHH-TTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCC----CCcEEEEeccchhhhhhhhc-ccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 689986 999999999999977 48999988763 3555655 464 1 12 23456789999999998
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.034 Score=52.83 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=47.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c---cc---ChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A---LN---DNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~---s~~e~~~~aDvIilaV~ 133 (341)
|||.|+|+ |.+|+.+++.|++.|+ +|++..|++++...+.. .++ . .. +..++++.+|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~----~V~~l~R~~~~~~~l~~-~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY----QVRCLVRNLRKASFLKE-WGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----eEEEEEcChHHhhhHhh-cCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 58999985 9999999999999984 99999998766554433 243 1 12 23456788999998753
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.04 Score=51.93 Aligned_cols=91 Identities=10% Similarity=0.182 Sum_probs=60.7
Q ss_pred CCCcCCCCCCCCcccC-CCC-CCCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHH
Q psy316 44 RPVRKSDMGMEDSVEH-HVP-MWTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHR 120 (341)
Q Consensus 44 ~~~~~~~~~~~~~~~~-~~~-m~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e 120 (341)
+-.+|+|.+.-..+++ +++ -.+++.|||.|. .|.+++..|.+.|. +|++++|.. .+..+
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga----tVtv~~~~t--------------~~L~~ 198 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANA----TVTICHSRT--------------QNLPE 198 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCC----EEEEEeCCc--------------hhHHH
Confidence 3456666544433332 233 347899999998 99999999998883 899998721 13445
Q ss_pred HhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 121 IIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++++|+||-|+.... .+. ...+ +++.+|+++
T Consensus 199 ~~~~aDIvI~AtG~~~---~v~---~~~l--k~gavViDv 230 (283)
T PRK14192 199 LVKQADIIVGAVGKPE---LIK---KDWI--KQGAVVVDA 230 (283)
T ss_pred HhccCCEEEEccCCCC---cCC---HHHc--CCCCEEEEE
Confidence 5688999999994221 121 1235 677788776
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.012 Score=47.53 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=50.5
Q ss_pred cccHHHHHHHHHHHhcCCC-CCCeEEEEcCChhhhhh-cC-cCCCc-cccChHHHhh--cCCEEEEeeChHHHHHHHHHh
Q psy316 71 GAGNMAQAVATSLIRTGLC-IPAQIIASAPSERFKLH-WP-EPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 71 G~G~mG~aia~~L~~~G~~-~~~~V~v~~r~~e~~~~-l~-~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~vl~~i 144 (341)
|+|++|+.+++.|.+.... .-.-+.+++|+ ..... .. ...+. ...+.++++. ..|+||-|+.++.+.+.+...
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence 8999999999999876310 01224578887 21111 11 10122 5667888887 899999999888887776655
Q ss_pred hhcccccCCCcEEEEecC
Q psy316 145 VNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 145 ~~~~l~~~~~~iIVs~~a 162 (341)
| ..+.-||+...
T Consensus 80 ----L--~~G~~VVt~nk 91 (117)
T PF03447_consen 80 ----L--ERGKHVVTANK 91 (117)
T ss_dssp ----H--HTTCEEEES-H
T ss_pred ----H--HCCCeEEEECH
Confidence 4 45666665543
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.015 Score=51.14 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=47.1
Q ss_pred eEEEEcccHHHHH--HHHHHHhcCCCCCCeEEEEcCChhhhhhcC-------cCCC----c-cccChHHHhhcCCEEEEe
Q psy316 66 KVGFIGAGNMAQA--VATSLIRTGLCIPAQIIASAPSERFKLHWP-------EPMD----F-ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 66 kIgiIG~G~mG~a--ia~~L~~~G~~~~~~V~v~~r~~e~~~~l~-------~~~g----~-~~~s~~e~~~~aDvIila 131 (341)
||+|||+|..-.. +..-+.....++..+|.++|+++++++... ++.| + .++|..++++.+|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 7999999976554 333344434345568999999999887422 2223 2 578899999999999999
Q ss_pred eChHH
Q psy316 132 MKPQY 136 (341)
Q Consensus 132 V~~~~ 136 (341)
+....
T Consensus 81 irvGg 85 (183)
T PF02056_consen 81 IRVGG 85 (183)
T ss_dssp --TTH
T ss_pred eeecc
Confidence 97643
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.066 Score=51.30 Aligned_cols=140 Identities=16% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeE--EEEcCChhhh-hhcCcC-CCcccc--ChHHHhhcCCEEEEeeChHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQI--IASAPSERFK-LHWPEP-MDFALN--DNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V--~v~~r~~e~~-~~l~~~-~g~~~~--s~~e~~~~aDvIilaV~~~~ 136 (341)
+++|||+|+ |..|+.|.+.|.+.. ++-..+ +.+.|+..+. -.+..+ .++ -. -.....+++|++|.|.+...
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~~~~~~~AS~rSaG~~~~~f~~~~~~v-~~~~~~~~~~~~~Divf~~ag~~~ 78 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPFEELVLLASARSAGKKYIEFGGKSIGV-PEDAADEFVFSDVDIVFFAAGGSV 78 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCcceEEEEecccccCCccccccCccccC-ccccccccccccCCEEEEeCchHH
Confidence 368999987 999999999998864 333334 3445554332 233331 122 11 12234568999999999877
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchh-hh----cCceEEEEeCCCCC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAM-KY----GKGITGMCHDVHLD 211 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~-~v----~~g~~~l~~~~~~~ 211 (341)
-+++...+ . ..|.+||+.++.. +.- ++.+ + ++|.... .. ..| .+..+++++
T Consensus 79 s~~~~p~~-~-----~~G~~VIdnsSa~------Rm~-------~DVP-L--VVPeVN~~~l~~~~~rg--~IianpNCs 134 (334)
T COG0136 79 SKEVEPKA-A-----EAGCVVIDNSSAF------RMD-------PDVP-L--VVPEVNPEHLIDYQKRG--FIIANPNCS 134 (334)
T ss_pred HHHHHHHH-H-----HcCCEEEeCCccc------ccC-------CCCC-E--ecCCcCHHHHHhhhhCC--CEEECCChH
Confidence 67777665 3 4678899875432 111 2333 2 2332111 11 123 345566665
Q ss_pred ccHHHHHHHHHHHHhcCCe
Q psy316 212 KESEHLNMAIKIMEQGGIV 230 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~ 230 (341)
. +...-.+.+|++..|..
T Consensus 135 t-~~l~~aL~PL~~~~~i~ 152 (334)
T COG0136 135 T-IQLVLALKPLHDAFGIK 152 (334)
T ss_pred H-HHHHHHHHHHHhhcCce
Confidence 4 13345577888887743
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.034 Score=56.15 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=45.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-h----hhhcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-F----KLHWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~----~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
.++|.|||+|..|.++|..|.+.|. +|+++++++. . .+.+.+ .|+ . .....+....+|+||++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~----~V~~~d~~~~~~~~~~~~~l~~-~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGA----RVTVVDDGDDERHRALAAILEA-LGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCchhhhHHHHHHHHH-cCCEEEECCCccccCCCCEEEECC
Confidence 4689999999999999999999985 8999986542 1 233444 476 2 222222345699999886
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.18 Score=47.67 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=64.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v~~ 139 (341)
+.||.|.|. |++|..+.++|.+.|+ ..++..++.. -.+.+ .|+ ...+..++-.. .|+.+++||+..+.+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~---~~v~pVnp~~-~~~~v---~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~ 80 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGT---NIVGGVTPGK-GGTTV---LGLPVFNTVAEAVEATGANASVIYVPPPFAAD 80 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCC---CEEEEECCCC-CCCeE---eCeeccCCHHHHhhccCCCEEEEEcCHHHHHH
Confidence 468999998 9999999999999885 2555555541 01222 466 67788887776 899999999999999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
++++. ... .- +.+|-+++|...+
T Consensus 81 ~l~e~-~~~---gv-k~avI~s~Gf~~~ 103 (291)
T PRK05678 81 AILEA-IDA---GI-DLIVCITEGIPVL 103 (291)
T ss_pred HHHHH-HHC---CC-CEEEEECCCCCHH
Confidence 99887 331 11 2333345787754
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.064 Score=52.02 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=52.5
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccCh-H--------HHh--hcCCEEEEeeC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDN-H--------RII--KEAEYVFLAMK 133 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~-~--------e~~--~~aDvIilaV~ 133 (341)
++.|+|+|.+|...+..+...|. .+|++.|+++++++..++..+. ...+. . +.. ..+|++|-|+-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga---~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA---SVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC---ceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 79999999999987776666663 6899999999998877663444 22221 1 111 24899999996
Q ss_pred -hHHHHHHHHHh
Q psy316 134 -PQYLDSAIQGL 144 (341)
Q Consensus 134 -~~~v~~vl~~i 144 (341)
+..+.+.++-+
T Consensus 248 ~~~~~~~ai~~~ 259 (350)
T COG1063 248 SPPALDQALEAL 259 (350)
T ss_pred CHHHHHHHHHHh
Confidence 34455555544
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.12 Score=48.08 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=57.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
+++++.|-|+ +.+|..+|+.|.+.|+ ++++..|++++++++++++ ++.. ..++-++++ .++.+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~----~liLvaR~~~kL~~la~~l-------~~~~-~v~v~vi~~DLs~~~~~~ 72 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY----NLILVARREDKLEALAKEL-------EDKT-GVEVEVIPADLSDPEALE 72 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCcHHHHHHHHHHH-------HHhh-CceEEEEECcCCChhHHH
Confidence 3456667788 9999999999999994 9999999999999887742 1111 234444444 467788
Q ss_pred HHHHHhhhcccccCCCcEEEEec
Q psy316 139 SAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
.+..++ +... .+=.++|..+
T Consensus 73 ~l~~~l-~~~~--~~IdvLVNNA 92 (265)
T COG0300 73 RLEDEL-KERG--GPIDVLVNNA 92 (265)
T ss_pred HHHHHH-HhcC--CcccEEEECC
Confidence 888777 5431 1224677653
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.095 Score=51.33 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...+|.|||+|.+|+.++..|...|. .+++++|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gv---g~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGV---GTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEeCC
Confidence 35689999999999999999999995 578888775
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.048 Score=54.43 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=47.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhh----hhcCcCCCc--cc-cChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFK----LHWPEPMDF--AL-NDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~----~~l~~~~g~--~~-~s~~e~~~~aDvIilaV~ 133 (341)
.+++.|+|+|.+|.++|+.|++.|+ +|++++++. +.+ +.+.+ .|+ .. ....+....+|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~----~V~~~d~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGA----KVILTDEKEEDQLKEALEELGE-LGIELVLGEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCchHHHHHHHHHHHh-cCCEEEeCCcchhHhhcCCEEEECCC
Confidence 4789999999999999999999994 999999974 222 33333 354 22 223345578999999873
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.26 Score=46.56 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=64.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v~ 138 (341)
..||.+.|. |.+|+.+.++|...|+ + .++..||.+ .+. -+|+ ...+..++-.. .|+.++++|+..+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~----~-~v~~V~p~~~~~~---v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~ 77 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGT----N-IVGGVTPGKGGTT---VLGLPVFDSVKEAVEETGANASVIFVPAPFAA 77 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCC----C-EEEEECCCCCcce---ecCeeccCCHHHHhhccCCCEEEEecCHHHHH
Confidence 357999997 9999999999999985 4 444445542 122 2477 77788887765 79999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
+++++. ... .-. .+|-+++|....
T Consensus 78 ~~l~e~-~~~---Gvk-~avIis~Gf~e~ 101 (286)
T TIGR01019 78 DAIFEA-IDA---GIE-LIVCITEGIPVH 101 (286)
T ss_pred HHHHHH-HHC---CCC-EEEEECCCCCHH
Confidence 999887 331 112 333356777644
|
ATP citrate lyases appear to form an outgroup. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.062 Score=50.58 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=53.6
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNM-AQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~m-G~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||.|++ |..++..|.+.|. .|+++.+. +.+..+.+++||+||.+++...+ +.
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~a----tVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~---i~ 216 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAGA----TVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV---LT 216 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC----EEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc---cC
Confidence 478999999998 9999999998874 88887542 12466788999999999974332 21
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 217 ---~~~i--k~gavVIDV 229 (285)
T PRK14189 217 ---ADMV--KPGATVIDV 229 (285)
T ss_pred ---HHHc--CCCCEEEEc
Confidence 2235 788898876
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.076 Score=52.00 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=29.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..+|+|||+|-.|+.++..|.+.|. .+|+++|.+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV---geI~LVD~D 209 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV---REIHLFDGD 209 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC---CEEEEECCC
Confidence 4689999999999999999999995 477776653
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.042 Score=56.37 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=38.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM 111 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~ 111 (341)
.+++.|+|+|.+|.+++..|.+.|. +|++++|+.++++.+.+++
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~----~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGA----RVVIANRTYERAKELADAV 422 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHh
Confidence 3678999999999999999999984 8999999999888776543
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.099 Score=49.22 Aligned_cols=70 Identities=13% Similarity=0.297 Sum_probs=53.9
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.+++.|||-|+ .|..++.-|.+.|. .|+++.+.- .++.+.+++||+||.++. |..+..
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~a----tVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p~~v~~-- 218 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGC----TVTVCHRFT--------------KNLRHHVRNADLLVVAVGKPGFIPG-- 218 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCC----eEEEEECCC--------------CCHHHHHhhCCEEEEcCCCcccccH--
Confidence 57999999998 99999999988874 899887531 246678899999999994 443322
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
+ .+ +++.+||++
T Consensus 219 -~----~v--k~gavVIDv 230 (285)
T PRK10792 219 -E----WI--KPGAIVIDV 230 (285)
T ss_pred -H----Hc--CCCcEEEEc
Confidence 2 35 788899886
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.11 Score=51.17 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=29.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..||.|||+|.+|+.+++.|..+|. .+++++|.+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv---g~l~lvD~D 71 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI---GRIGIVDFD 71 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC---CEEEEECCC
Confidence 5689999999999999999999996 577777764
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.061 Score=53.98 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=45.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIila 131 (341)
+||.|||+|..|.+.++.|.+.|+ +|+++|+.+.....+.+ .|+ ......+.+.++|+||.+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~----~v~~~D~~~~~~~~l~~-~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGA----EVIAWDDNPASRAKAAA-AGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCC----EEEEECCChhhHHHHHh-cCccccCCChhHHcCCCEEEEC
Confidence 589999999999999999999994 99999987554444443 466 322122345689998864
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.068 Score=53.72 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-----hhhhcCcCCCc-c-c-cChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-----FKLHWPEPMDF-A-L-NDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-----~~~~l~~~~g~-~-~-~s~~e~~~~aDvIilaV 132 (341)
.+||+|+|+|.-|.++++.|.+.|+ +|+++|+++. ..+.+.+ .|+ . . ....+.+.++|+||.+-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~----~V~~~D~~~~~~~~~~~~~l~~-~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGA----KVTAFDKKSEEELGEVSNELKE-LGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCC----EEEEECCCCCccchHHHHHHHh-CCCEEEeCCCChHHhccCCEEEECC
Confidence 4689999999999999999999994 9999998642 1133544 466 2 2 22345567899999873
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.25 Score=47.23 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
||.|||+|.+|+.++++|...|. .+|+++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv---g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF---GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC---CeEEEEcCC
Confidence 68999999999999999999996 688888864
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.1 Score=54.28 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=28.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP 99 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r 99 (341)
..||.|||+|.+|+.+++.|...|. .+|+++|.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GV---g~ItlVD~ 370 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGV---RHITFVDN 370 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---CeEEEEcC
Confidence 3689999999999999999999996 46766664
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.099 Score=50.90 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
...||.|||+|.+|+.+++.|...|. .+++++|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gv---g~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGV---GHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCC---CeEEEEeCCE
Confidence 45789999999999999999999996 5788877653
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.15 Score=49.81 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=56.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC--ChhhhhhcCcCCCccccC--hHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP--SERFKLHWPEPMDFALND--NHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r--~~e~~~~l~~~~g~~~~s--~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++|||+|+ |..|+.|.+.|.....++-.++.+... +..+.-.+..+ .....+ ..+...+.|++|+|.+...-++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~-~~~v~~~~~~~~~~~vDivffa~g~~~s~~ 79 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT-TGTLQDAFDIDALKALDIIITCQGGDYTNE 79 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC-cceEEcCcccccccCCCEEEEcCCHHHHHH
Confidence 47999999 999999999998444345445555442 22222222221 111112 2235678999999999887666
Q ss_pred HHHHhhhcccccCCC--cEEEEecC
Q psy316 140 AIQGLVNDKVTLNSS--RCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~--~iIVs~~a 162 (341)
+...+ . ..| .+||+.++
T Consensus 80 ~~p~~-~-----~aG~~~~VIDnSS 98 (366)
T TIGR01745 80 IYPKL-R-----ESGWQGYWIDAAS 98 (366)
T ss_pred HHHHH-H-----hCCCCeEEEECCh
Confidence 66555 3 355 67888754
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.41 Score=43.53 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=53.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-ccc--ChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-ALN--DNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~~~--s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.++|.|||.|.+|..=++.|++.|. +|+|+.... ..+..+.+.-.+ ... -..+.+..+++||.|+.+..+..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA----~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~ 100 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGC----YVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNN 100 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHH
Confidence 4689999999999998999999984 899987643 233344332122 111 11344688999999999887777
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
-+.+.
T Consensus 101 ~I~~~ 105 (223)
T PRK05562 101 KIRKH 105 (223)
T ss_pred HHHHH
Confidence 66555
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.13 Score=50.70 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=30.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.+|+.++..|..+|. .+++++|.+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gv---g~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGV---GTLGIVEFD 75 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCC---CeEEEECCC
Confidence 45789999999999999999999996 577777754
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.65 Score=43.73 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=65.6
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhh--hh-hcCcCCCc-cc--cChHHHhh-----cCC-E
Q psy316 62 PMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERF--KL-HWPEPMDF-AL--NDNHRIIK-----EAE-Y 127 (341)
Q Consensus 62 ~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~--~~-~l~~~~g~-~~--~s~~e~~~-----~aD-v 127 (341)
.+..||.+.|+ |+||+..++.+.+.++ ++. ..++.+.- .. .+.. .++ .. .+.++.+. .+| |
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g-~~v~~~~~~dl~~~l~~~~~~~~~~V 83 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVSAGL----QLVPVSFTGPAGVGVTVEVCG-VEVRLVGPSEREAVLSSVKAEYPNLI 83 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhcCCC----EEEEEeccccccccccceecc-ceeeeecCccHHHHHHHhhccCCCEE
Confidence 46679999999 9999999999988665 444 45554422 11 2222 144 33 67777662 489 7
Q ss_pred EEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 128 VFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 128 IilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+|=-+.|..+.+.++.. . ..+.-+|.-+.|.+.++++++..
T Consensus 84 vIDFT~P~a~~~~~~~~-~-----~~g~~~VvGTTG~~~e~l~~~~~ 124 (286)
T PLN02775 84 VVDYTLPDAVNDNAELY-C-----KNGLPFVMGTTGGDRDRLLKDVE 124 (286)
T ss_pred EEECCChHHHHHHHHHH-H-----HCCCCEEEECCCCCHHHHHHHHh
Confidence 77667787777776654 2 23333444557888888776544
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.09 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT 86 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~ 86 (341)
|||++||+|++|+.+++.|.+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4899999999999999998773
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.14 Score=47.51 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=65.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhc----CCCC---CCeEEEEcCCh----hh--hh----hcCcCCCc--cccChHHHhhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT----GLCI---PAQIIASAPSE----RF--KL----HWPEPMDF--ALNDNHRIIKEA 125 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~----G~~~---~~~V~v~~r~~----e~--~~----~l~~~~g~--~~~s~~e~~~~a 125 (341)
.||.|+|+|.-|..+++.|... |.-. ..+|+++|+.- .+ +. .+..+..- ...++.|+++.+
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~ 105 (255)
T PF03949_consen 26 QRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGA 105 (255)
T ss_dssp -EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH
T ss_pred cEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhc
Confidence 5899999999999999999988 8411 15789888741 11 11 11111111 224788888876
Q ss_pred --CEEEEe--eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhcc
Q psy316 126 --EYVFLA--MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKLS 174 (341)
Q Consensus 126 --DvIila--V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l~ 174 (341)
|++|=+ .+.-.-+++++.+ ..+ .+..+|..+++..+ .++..+|..
T Consensus 106 kPtvLIG~S~~~g~ft~evv~~M-a~~---~erPIIF~LSNPt~~aE~~peda~~~t~ 159 (255)
T PF03949_consen 106 KPTVLIGLSGQGGAFTEEVVRAM-AKH---NERPIIFPLSNPTPKAECTPEDAYEWTD 159 (255)
T ss_dssp --SEEEECSSSTTSS-HHHHHHC-HHH---SSSEEEEE-SSSCGGSSS-HHHHHHTTT
T ss_pred CCCEEEEecCCCCcCCHHHHHHH-hcc---CCCCEEEECCCCCCcccCCHHHHHhhCC
Confidence 988844 3444567788888 665 36778888888766 344445543
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.24 Score=46.00 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=44.3
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC---hHHHh------hc-CCEEEEee
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND---NHRII------KE-AEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s---~~e~~------~~-aDvIilaV 132 (341)
+|.|+|+ |.+|+.+++.|++.|+ +|.+..|++++.....-+ .+ ...+ ..+++ .. +|.||++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~----~V~~~~R~~~~~~~~~~~-~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~ 75 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV----PFLVASRSSSSSAGPNEK-HVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVA 75 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC----cEEEEeCCCccccCCCCc-cccccCCCHHHHHHHHhcccCcCCceeEEEEeC
Confidence 4888987 9999999999999984 899999998765321111 11 1222 23344 34 89999887
Q ss_pred Ch
Q psy316 133 KP 134 (341)
Q Consensus 133 ~~ 134 (341)
++
T Consensus 76 ~~ 77 (285)
T TIGR03649 76 PP 77 (285)
T ss_pred CC
Confidence 63
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.27 Score=44.42 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=52.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.+++.|.| .|.+|.++++.|++.|. +|++.+|++++.+.+.+++ .+....+.+.++.+ .+..+.
T Consensus 1 ~~k~vlItGas~giG~~la~~l~~~g~----~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~ 69 (248)
T PRK08251 1 TRQKILITGASSGLGAGMAREFAAKGR----DLALCARRTDRLEELKAEL-------LARYPGIKVAVAALDVNDHDQVF 69 (248)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------HhhCCCceEEEEEcCCCCHHHHH
Confidence 456788886 59999999999999984 8999999988766554321 11111233444333 345666
Q ss_pred HHHHHhhhcccccCCCcEEEEec
Q psy316 139 SAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
++++++ ...+ .+=.++|..+
T Consensus 70 ~~~~~~-~~~~--~~id~vi~~a 89 (248)
T PRK08251 70 EVFAEF-RDEL--GGLDRVIVNA 89 (248)
T ss_pred HHHHHH-HHHc--CCCCEEEECC
Confidence 777666 4433 2223566553
|
|
| >KOG0022|consensus | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.28 Score=46.65 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=58.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChH-------HHhh-----cCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNH-------RIIK-----EAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~-------e~~~-----~aDvIila 131 (341)
.+++|+|+|.+|.+.+.+-..+|. .+|+..|.|+++.+..++ +|+ .+-++. |.+. ..|+-|-|
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GA---srIIgvDiN~~Kf~~ak~-fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc 269 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGA---SRIIGVDINPDKFEKAKE-FGATEFINPKDLKKPIQEVIIEMTDGGVDYSFEC 269 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCc---ccEEEEecCHHHHHHHHh-cCcceecChhhccccHHHHHHHHhcCCceEEEEe
Confidence 579999999999999999999985 799999999999888766 887 332332 2221 46788887
Q ss_pred e-ChHHHHHHHHHh
Q psy316 132 M-KPQYLDSAIQGL 144 (341)
Q Consensus 132 V-~~~~v~~vl~~i 144 (341)
+ .++.+++.+...
T Consensus 270 ~G~~~~m~~al~s~ 283 (375)
T KOG0022|consen 270 IGNVSTMRAALESC 283 (375)
T ss_pred cCCHHHHHHHHHHh
Confidence 7 467777777665
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.29 Score=46.19 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..+|.|||+|-+|+.++..|..+|. .+++++|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV---G~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI---GKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC---CeEEEEeCCC
Confidence 4689999999999999999999996 6888888753
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.34 Score=46.02 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=51.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++..|++++.+.+.+++ .+......+.++.+ .+..++.+
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~----~Vil~~R~~~~~~~~~~~l-------~~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGA----EVILPVRNRAKGEAAVAAI-------RTAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HHhCCCCceEEEEecCCCHHHHHHH
Confidence 45555554 8899999999999994 8999999988766543321 11111234545444 34567777
Q ss_pred HHHhhhcccccCCCcEEEEec
Q psy316 141 IQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ 161 (341)
++++ .... .+=.++|..+
T Consensus 84 ~~~~-~~~~--~~iD~li~nA 101 (313)
T PRK05854 84 GEQL-RAEG--RPIHLLINNA 101 (313)
T ss_pred HHHH-HHhC--CCccEEEECC
Confidence 7666 4333 2224666654
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.47 Score=44.80 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..+|.|+|+|.+|..++++|..+|. ..|+++|.+.
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV---g~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV---KSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC---CeEEEEcCCc
Confidence 4689999999999999999999996 6888888653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.29 Score=44.67 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=53.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|++++.|.| .|.+|..+++.|++.|. +|++.+|++++++.+.+++. . ..++.++.+ .+..+.
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~~----~------~~~~~~~~~Dl~~~~~i~ 66 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGA----TLGLVARRTDALQAFAARLP----K------AARVSVYAADVRDADALA 66 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHhcc----c------CCeeEEEEcCCCCHHHHH
Confidence 456788887 59999999999999984 89999999887765544211 0 013333333 355677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++ .... .+=.++|+..+
T Consensus 67 ~~~~~~-~~~~--g~id~lv~~ag 87 (257)
T PRK07024 67 AAAADF-IAAH--GLPDVVIANAG 87 (257)
T ss_pred HHHHHH-HHhC--CCCCEEEECCC
Confidence 777665 4333 22246776543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.24 Score=44.29 Aligned_cols=83 Identities=12% Similarity=0.102 Sum_probs=53.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
++|.|.|+ |.+|..+++.|++.|+ +|++++|++++.+.+..+ ..+ ..+++.++.+ .+..+.++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~----~v~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~ 72 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGA----KVVIYDSNEEAAEALAAE-------LRA--AGGEARVLVFDVSDEAAVRAL 72 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCChhHHHHHHHH-------HHh--cCCceEEEEccCCCHHHHHHH
Confidence 67899986 9999999999999984 899999998765543321 000 1223444333 34566677
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++++ ...+ .+=..||++++.
T Consensus 73 ~~~~-~~~~--~~id~vi~~ag~ 92 (246)
T PRK05653 73 IEAA-VEAF--GALDILVNNAGI 92 (246)
T ss_pred HHHH-HHHh--CCCCEEEECCCc
Confidence 7666 4444 333467776544
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.098 Score=52.60 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=46.6
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
++|.|||+|..|.+ +|+.|.+.|+ +|+++|.++. ..+.|.+ .|+ . .....+.+..+|+||++-
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~----~V~~~D~~~~~~~~~l~~-~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGY----KVSGSDLKESAVTQRLLE-LGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCC----eEEEECCCCChHHHHHHH-CCCEEeCCCCHHHCCCCCEEEECC
Confidence 58999999999999 8999999994 9999997543 3334544 476 3 233345567899998774
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.24 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTG 87 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G 87 (341)
|.+||||.|+|+||+.+.+.+.+.+
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~ 25 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWP 25 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCC
Confidence 4579999999999999999988654
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.15 Score=46.58 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=44.1
Q ss_pred eEEEEcCChhhhhhcCcCCCc-cccChHHHh-hcCCEEEEeeChHHHHHHHHHh
Q psy316 93 QIIASAPSERFKLHWPEPMDF-ALNDNHRII-KEAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 93 ~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~-~~aDvIilaV~~~~v~~vl~~i 144 (341)
-+.+||+++++++.+.+++|+ .+.+.++++ .+.|+|++|+|+....++..+.
T Consensus 4 LvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~a 57 (229)
T TIGR03855 4 IAAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKI 57 (229)
T ss_pred EEEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHH
Confidence 356899999999998887888 778888876 5799999999999888877665
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.27 Score=47.16 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=52.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc----ChHHHhh---cCCEEEEeeCh-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN----DNHRIIK---EAEYVFLAMKP- 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~----s~~e~~~---~aDvIilaV~~- 134 (341)
.++.|+|+|.+|...++.+...|. .+|++.++++++++.+++ +|+ ... +..+... ..|+||-++-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~---~~Vi~~~~~~~~~~~a~~-lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~ 246 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGA---AEIVCADVSPRSLSLARE-MGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP 246 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---cEEEEEeCCHHHHHHHHH-cCCcEEecCCcccHHHHhccCCCCCEEEECCCCH
Confidence 579999999999988887777774 468899999999887665 776 221 1222222 26899988864
Q ss_pred HHHHHHHHHh
Q psy316 135 QYLDSAIQGL 144 (341)
Q Consensus 135 ~~v~~vl~~i 144 (341)
..+...++-+
T Consensus 247 ~~~~~~~~~l 256 (343)
T PRK09880 247 SSINTCLEVT 256 (343)
T ss_pred HHHHHHHHHh
Confidence 4555555444
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.48 Score=43.73 Aligned_cols=81 Identities=9% Similarity=0.120 Sum_probs=49.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|+++..+.+.++++ ...++.++.+ .+..+.++
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~----~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dl~d~~~~~~~ 84 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGA----KVCIVDLQDDLGQNVCDSLG----------GEPNVCFFHCDVTVEDDVSRA 84 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHhc----------CCCceEEEEeecCCHHHHHHH
Confidence 45666655 8999999999999994 89999998766554433210 0123333332 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+..+ ...+ .+=.+||++++
T Consensus 85 ~~~~-~~~~--g~id~li~~Ag 103 (280)
T PLN02253 85 VDFT-VDKF--GTLDIMVNNAG 103 (280)
T ss_pred HHHH-HHHh--CCCCEEEECCC
Confidence 6665 4433 22246776643
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.33 Score=44.05 Aligned_cols=79 Identities=10% Similarity=0.191 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+|.|+|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+..+ .++.++.. .+..+.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~Dl~~~~~i~~~ 64 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH----KVIATGRRQERLQELKDELG------------DNLYIAQLDVRNRAAIEEM 64 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhc------------cceEEEEecCCCHHHHHHH
Confidence 57888986 9999999999999984 89999999877665433211 12333322 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 65 ~~~~-~~~~--~~id~vi~~ag 83 (248)
T PRK10538 65 LASL-PAEW--RNIDVLVNNAG 83 (248)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6665 4433 33346666543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.43 Score=42.65 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=51.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe---eChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila---V~~~~v~~ 139 (341)
.++|.|+|+ |.+|..+++.|++.|. +|++.+|++++.+.+.+++. ...++.++. ..+..+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~----~V~~~~r~~~~~~~~~~~l~----------~~~~~~~~~~D~~~~~~~~~ 71 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY----KVAITARDQKELEEAAAELN----------NKGNVLGLAADVRDEADVQR 71 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC----EEEEeeCCHHHHHHHHHHHh----------ccCcEEEEEccCCCHHHHHH
Confidence 367888876 9999999999999884 89999999877665433210 002222222 23556666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.+||++.+
T Consensus 72 ~~~~~-~~~~--~~~d~vi~~ag 91 (237)
T PRK07326 72 AVDAI-VAAF--GGLDVLIANAG 91 (237)
T ss_pred HHHHH-HHHc--CCCCEEEECCC
Confidence 66665 4433 22346665543
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.32 Score=45.51 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...+|.|||+|.+|+.++..|..+|. .+++++|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEEeCC
Confidence 35689999999999999999999995 578887765
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.77 Score=42.53 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=62.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCC---C----CCeEEEEcCCh----hh--hh----h---cCcCCCccccChHHHhh-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLC---I----PAQIIASAPSE----RF--KL----H---WPEPMDFALNDNHRIIK- 123 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~---~----~~~V~v~~r~~----e~--~~----~---l~~~~g~~~~s~~e~~~- 123 (341)
.||.|.|+|.-|..+++.|...+.- . ..+|+++|+.- .+ +. . +.+. .-...++.|+++
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-~~~~~~L~eav~~ 104 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANP-ERESGDLEDAVEA 104 (254)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCc-ccccCCHHHHHHh
Confidence 6899999999999999999886530 0 12788887641 11 11 1 1111 113457888888
Q ss_pred -cCCEEE-Eee-ChHHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 124 -EAEYVF-LAM-KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 124 -~aDvIi-laV-~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
++|++| ++. +.-.-+++++.+ ..+ .+..+|..+++..+
T Consensus 105 ~kptvlIG~S~~~g~ft~evv~~M-a~~---~~~PIIFaLSNPt~ 145 (254)
T cd00762 105 AKPDFLIGVSRVGGAFTPEVIRAX-AEI---NERPVIFALSNPTS 145 (254)
T ss_pred hCCCEEEEeCCCCCCCCHHHHHHH-hhc---CCCCEEEECCCcCC
Confidence 899888 444 333456788877 654 36678888888776
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.28 Score=46.47 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=27.9
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
||.+||+|.+|+.+++.|...|+ .+++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv---g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF---RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC---CeEEEECCC
Confidence 68999999999999999999996 577777654
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.17 Score=48.52 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=43.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc----C---hHHHhhcCCEEEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN----D---NHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~----s---~~e~~~~aDvIil 130 (341)
|||.|.|+ |-+|+.+++.|++.+ .++|++.+|+.++...+....++ ... + ..++++.+|+||=
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~---~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT---DWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC---CCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 68999997 999999999999863 15899999876655444321122 111 2 1245678999993
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.39 Score=43.67 Aligned_cols=86 Identities=9% Similarity=0.066 Sum_probs=51.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.++|.|.|+ |.+|.++++.|.+.|. +|++.+|+.++.+.+.++. ........+.++.+ .+..+.
T Consensus 1 m~k~ilItG~~~~IG~~la~~l~~~g~----~vi~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~i~ 69 (259)
T PRK12384 1 MNQVAVVIGGGQTLGAFLCHGLAEEGY----RVAVADINSEKAANVAQEI-------NAEYGEGMAYGFGADATSEQSVL 69 (259)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HHhcCCceeEEEEccCCCHHHHH
Confidence 4567888876 8999999999999984 8999999876655443210 00000122333332 345666
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.++.++ ...+ .+=.++|++++
T Consensus 70 ~~~~~~-~~~~--~~id~vv~~ag 90 (259)
T PRK12384 70 ALSRGV-DEIF--GRVDLLVYNAG 90 (259)
T ss_pred HHHHHH-HHHc--CCCCEEEECCC
Confidence 677666 4433 23346776643
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.26 Score=42.50 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=47.7
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.+||-+ .+|..++.-|.+.|. .|+++...- .+.++.+++||+||.++.-..+ +.
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~a----tVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~---i~ 94 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGA----TVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL---IK 94 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-----EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT----B-
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCC----eEEeccCCC--------------CcccceeeeccEEeeeeccccc---cc
Confidence 4789999997 599999999999884 888887542 1456778899999999953322 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 95 ---~~~i--k~gavVIDv 107 (160)
T PF02882_consen 95 ---ADWI--KPGAVVIDV 107 (160)
T ss_dssp ---GGGS---TTEEEEE-
T ss_pred ---cccc--cCCcEEEec
Confidence 2346 788899987
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.11 Score=47.25 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=35.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
|.++|.|.|+ |.+|.++++.|.+.|. +|++.+|++++.+.+.
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~----~v~~~~r~~~~~~~~~ 43 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGY----RVLAACRKPDDVARMN 43 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHhHHHH
Confidence 4567999998 9999999999999984 8999999988766543
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.13 Score=51.18 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=44.3
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hh----hcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KL----HWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~----~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
||.|||+|..|.++|+.|.+.|+ +|+++|+++.. .. .+....|+ . .....+.+.++|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~----~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA----EVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC----EEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECC
Confidence 58999999999999999999995 99999975431 11 12212365 2 222345567899988764
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.43 Score=44.81 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=68.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhc----CCCC----CCeEEEEcCCh----hh--hhh----cCcCCCc-cccChHHHhh--
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT----GLCI----PAQIIASAPSE----RF--KLH----WPEPMDF-ALNDNHRIIK-- 123 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~----G~~~----~~~V~v~~r~~----e~--~~~----l~~~~g~-~~~s~~e~~~-- 123 (341)
.||.|.|+|.-|..+++.|... |. . ..+|+++|+.- .+ +.. +..+..- ...++.|+++
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~-~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v 104 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGL-SEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAV 104 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCC-ChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhc
Confidence 6899999999999999999887 74 2 14788888751 11 111 1111110 2247889999
Q ss_pred cCCEEEEee-ChH-HHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhc
Q psy316 124 EAEYVFLAM-KPQ-YLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKL 173 (341)
Q Consensus 124 ~aDvIilaV-~~~-~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l 173 (341)
++|++|=+. .+. .-+++++.+ ..+. +..+|..+++..+ .++..+|.
T Consensus 105 ~ptvlIG~S~~~g~ft~evv~~M-a~~~---~~PIIFaLSNPt~~~E~~pe~a~~~t 157 (279)
T cd05312 105 KPTVLIGLSGVGGAFTEEVVRAM-AKSN---ERPIIFALSNPTSKAECTAEDAYKWT 157 (279)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHH-HhcC---CCCEEEECCCcCCccccCHHHHHHhh
Confidence 889988443 343 456788887 6553 6778999988875 34555554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.38 Score=46.28 Aligned_cols=94 Identities=11% Similarity=0.136 Sum_probs=53.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCC--C----CCCeE-EEEcCChhhhhhcCcCCC-c-cccCh-----HHHhh--cCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGL--C----IPAQI-IASAPSERFKLHWPEPMD-F-ALNDN-----HRIIK--EAE 126 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~--~----~~~~V-~v~~r~~e~~~~l~~~~g-~-~~~s~-----~e~~~--~aD 126 (341)
|.++|+++|+|++|+.+++-|.+++- . ...+| .+.+|+......+.- .+ . ...+. .+.+. +.|
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDL-LNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccc-cchhhheecccccccHhhhccccCC
Confidence 45799999999999999999987631 0 01122 356665544431111 12 1 22233 34443 567
Q ss_pred EEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEec
Q psy316 127 YVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 127 vIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+|+-+++. ..-++ +..+ ...+ ..++-||+-.
T Consensus 81 vvve~~~~d~~~~~~-~~~~-~~al--~~GkhVVTaN 113 (333)
T COG0460 81 VVVELVGGDVEPAEP-ADLY-LKAL--ENGKHVVTAN 113 (333)
T ss_pred EEEecCcccCCchhh-HHHH-HHHH--HcCCeEECCC
Confidence 99988865 23333 3334 4445 5666666543
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.48 Score=44.06 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=50.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccC---hHHHh------hcCCEEEEeeC-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALND---NHRII------KEAEYVFLAMK- 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s---~~e~~------~~aDvIilaV~- 133 (341)
.++.|+|+|.+|...++.+...|. ..|++.++++++.+.+++ +|+ .+-+ ..+.+ ...|++|-++-
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~---~~Vi~~~~~~~r~~~a~~-~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGA---ARVVAADPSPDRRELALS-FGATALAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---CEEEEECCCHHHHHHHHH-cCCcEecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 579999999999998887777774 348888988888776555 676 2211 11111 13688888774
Q ss_pred hHHHHHHHHHh
Q psy316 134 PQYLDSAIQGL 144 (341)
Q Consensus 134 ~~~v~~vl~~i 144 (341)
+..+...++-+
T Consensus 198 ~~~~~~~~~~l 208 (280)
T TIGR03366 198 TAAVRACLESL 208 (280)
T ss_pred hHHHHHHHHHh
Confidence 44455555444
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG1370|consensus | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.6 Score=41.50 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=50.9
Q ss_pred eEE-EEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH
Q psy316 66 KVG-FIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 66 kIg-iIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~ 136 (341)
|++ |.|.|..|..-++.|...| ..|++...+|-.+-+.+-+ |..+...+|+++..|+++.++--.+
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g----~~VivTEiDPI~ALQAaMe-G~~V~tm~ea~~e~difVTtTGc~d 281 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFG----ARVIVTEIDPICALQAAME-GYEVTTLEEAIREVDIFVTTTGCKD 281 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcC----cEEEEeccCchHHHHHHhh-ccEeeeHHHhhhcCCEEEEccCCcc
Confidence 455 5599999999999999888 4899999888655444332 6645578899999999999986543
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.49 Score=42.84 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe--e-ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA--M-KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila--V-~~~~v~~ 139 (341)
.+++.|.|+ |.+|.++++.|.+.|+ +|++.+|++++++.+.+++. .......+.++. + .+..+.+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~----~v~~~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~~Dl~d~~~~~~ 72 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG----IVIAADIDKEALNELLESLG-------KEFKSKKLSLVELDITDQESLEE 72 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----EEEEEecChHHHHHHHHHHH-------hhcCCCceeEEEecCCCHHHHHH
Confidence 356778876 8999999999999984 89999999877765543210 000111222222 2 3567777
Q ss_pred HHHHhhhcccccCCCcEEEEec
Q psy316 140 AIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+++++ ...+ .+=.+||+++
T Consensus 73 ~~~~~-~~~~--~~id~vi~~A 91 (256)
T PRK09186 73 FLSKS-AEKY--GKIDGAVNCA 91 (256)
T ss_pred HHHHH-HHHc--CCccEEEECC
Confidence 77776 5444 3334677665
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.2 Score=37.04 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCeE-EcCCC---chhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 215 EHLNMAIKIMEQGGIVE-IIPES---MMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~-~v~e~---~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
+....++.|++.+|..+ .++++ .++.+.++++ .|+..+...-.+...+.|++.+.+++++...+.++.+.+.+
T Consensus 11 ~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~as---Nf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~~~ 87 (132)
T PF10728_consen 11 EALEVLQELAKELGGRPFEIDSEQRALYHAAAVFAS---NFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENILQ 87 (132)
T ss_dssp HHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHH---hhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh
Confidence 78899999999999864 56554 4555555554 34433333334445688999999999999999999999976
Q ss_pred hhhhccccCCCChHHHHHhcCCCc-hHHHHHHHHHHh
Q psy316 291 DLLRMDHAAQAHPAVIKDQICSPG-GSTIAGIHALEK 326 (341)
Q Consensus 291 ~~~~~~~~~~~~p~~l~~~v~tpg-G~t~~~l~~l~~ 326 (341)
.+ .++.+.--+.-.. ++..+=+..|++
T Consensus 88 --------~g-~~~alTGP~~RgD~~Tv~kHl~~L~~ 115 (132)
T PF10728_consen 88 --------LG-PADALTGPAARGDIGTVAKHLAALDD 115 (132)
T ss_dssp --------S--HHHH--SCCHCTHHHHHHHHHHHCCC
T ss_pred --------cC-chhccCCCcccCCHHHHHHHHHHHhc
Confidence 22 2244544444333 333333555554
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.55 Score=42.63 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=35.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
|.+++.|+|+ |.+|..+++.|++.|. +|++.+|++++.+.+.+
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~----~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGD----RVLALDIDAAALAAFAD 44 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH
Confidence 4467888887 8999999999999984 89999999877665443
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.16 Score=50.42 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=51.4
Q ss_pred CCeEEEEcccHHHHHH-HHHH-HhcCCCCCCeEEEEcCChhhhhh-------cCcCCCc-----cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAV-ATSL-IRTGLCIPAQIIASAPSERFKLH-------WPEPMDF-----ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~ai-a~~L-~~~G~~~~~~V~v~~r~~e~~~~-------l~~~~g~-----~~~s~~e~~~~aDvIi 129 (341)
++||+|||+|....+. ..++ ...--++..+|.++|.++++.+. +.++.|. .++|.++++.+||+|+
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi 82 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVI 82 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEE
Confidence 5789999999887542 2222 33333556689999999888762 2233343 5678999999999999
Q ss_pred EeeChHH
Q psy316 130 LAMKPQY 136 (341)
Q Consensus 130 laV~~~~ 136 (341)
.++.+..
T Consensus 83 ~~~rvG~ 89 (442)
T COG1486 83 TQIRVGG 89 (442)
T ss_pred EEEeeCC
Confidence 9986543
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.22 Score=47.19 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc----CCC----c--cccChHHH---hhcCCEEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE----PMD----F--ALNDNHRI---IKEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~----~~g----~--~~~s~~e~---~~~aDvIil 130 (341)
..+|.+||+|..|..-.- +.+++.+...++.+|++++..+..++ ..+ + ...+..+. ..+.|+||+
T Consensus 124 p~~VldIGcGpgpltaii--laa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIV--LAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCEEEEECCCCcHHHHHH--HHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 468999999988653221 22222344589999999876543222 112 2 22333332 357999999
Q ss_pred eeC----hHHHHHHHHHhhhcccccCCCcEEEE
Q psy316 131 AMK----PQYLDSAIQGLVNDKVTLNSSRCIIS 159 (341)
Q Consensus 131 aV~----~~~v~~vl~~i~~~~l~~~~~~iIVs 159 (341)
.+- ...-.++++.+ ...+ ++|.+++-
T Consensus 202 ~ALi~~dk~~k~~vL~~l-~~~L--kPGG~Lvl 231 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHL-GKHM--APGALLML 231 (296)
T ss_pred ecccccccccHHHHHHHH-HHhc--CCCcEEEE
Confidence 961 23446778888 7778 77776653
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.27 Score=46.39 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee-ChHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM-KPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV-~~~~v~~vl 141 (341)
.+++.|||-|+ .|..++.-|.+.|. .|+++...- .++.+..++||+||.|+ +|..+.
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~a----tVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~~i~--- 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNA----TVSVCHVFT--------------DDLKKYTLDADILVVATGVKHLIK--- 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCC----EEEEEeccC--------------CCHHHHHhhCCEEEEccCCccccC---
Confidence 47899999998 99999999988874 899887421 24567788999999988 455321
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 223 ----~~~v--k~gavVIDv 235 (287)
T PRK14176 223 ----ADMV--KEGAVIFDV 235 (287)
T ss_pred ----HHHc--CCCcEEEEe
Confidence 2245 788899986
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.19 Score=50.07 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=45.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh----hhhcCcCCCc-cc--cChHHHhhc-CCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF----KLHWPEPMDF-AL--NDNHRIIKE-AEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~----~~~l~~~~g~-~~--~s~~e~~~~-aDvIilaV 132 (341)
.+++.|+|.|.+|.++++.|.+.|. +|+++|++... .+.+.+ .|+ .. .+..+.... .|+||.+-
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~----~V~~~d~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGA----NVTVNDGKPFSENPEAQELLE-EGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----EEEEEcCCCccchhHHHHHHh-cCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 3679999999999999999999994 99999976422 233444 465 22 234444444 89888765
|
|
| >KOG1495|consensus | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.53 Score=43.84 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh--cCcCCCc-c-------ccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH--WPEPMDF-A-------LNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~--l~~~~g~-~-------~~s~~e~~~~aDvIilaV~ 133 (341)
.-||.|+|.|+.|.+.+..++..|+ ..++.+.|.++++++- +--+.|. . ......+-++++++|+..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~L--adel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAG 97 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGL--ADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAG 97 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhh--hhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEecC
Confidence 4689999999999999999998886 4588999998876552 1111121 1 1111234568999998862
Q ss_pred h--H---H----H---HHHHHHhhhcccc-cCCCcEEEEecCCCCHHHHHH
Q psy316 134 P--Q---Y----L---DSAIQGLVNDKVT-LNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 134 ~--~---~----v---~~vl~~i~~~~l~-~~~~~iIVs~~agi~~~~l~~ 171 (341)
. + . + -++++.+ .|.+- -.|+.+++-.++.+++-+...
T Consensus 98 arq~~gesRL~lvQrNV~ifK~i-ip~lv~ySpd~~llvvSNPVDilTYv~ 147 (332)
T KOG1495|consen 98 ARQSEGESRLDLVQRNVDIFKAI-IPALVKYSPDCILLVVSNPVDILTYVT 147 (332)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHH-HHHHhhcCCCeEEEEecCchHHHHHHH
Confidence 1 1 1 1 1233333 33210 057888777778887654433
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.22 Score=46.96 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=52.6
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||-| ..|..++..|.+.|. .|+++.... .++.+.+++||+||.|+.-..+ +.
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~gA----tVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~---i~ 215 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAGA----SVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDL---IK 215 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCC----EEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCc---CC
Confidence 4799999999 999999999998884 888874321 1345678899999999953322 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 216 ---~~~v--k~GavVIDv 228 (285)
T PRK14191 216 ---ASMV--KKGAVVVDI 228 (285)
T ss_pred ---HHHc--CCCcEEEEe
Confidence 2245 788898886
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.32 E-value=1 Score=42.23 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=62.9
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEE--EcCChh--hhhhcCcCCCc-c------ccChHHHhhc-CC-EEEEe
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIA--SAPSER--FKLHWPEPMDF-A------LNDNHRIIKE-AE-YVFLA 131 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v--~~r~~e--~~~~l~~~~g~-~------~~s~~e~~~~-aD-vIila 131 (341)
||.|.|+ |+||+..++.+.+.++ ++.. +++... ....+.. .++ . ..++.+++.. +| |+|=-
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~----~Lv~~~~~~~~~~~~~~~~~g-~~v~v~~~~~~~~~l~~~~~~~~d~VvIDF 76 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGL----EIVPTSFGGEEEAENEAEVAG-KEILLHGPSEREARIGEVFAKYPELICIDY 76 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCC----EEEeeEccccccccchhhhcc-cceeeeccccccccHHHHHhhcCCEEEEEC
Confidence 6889998 9999999999888765 5543 343211 2222222 133 3 5566777766 99 88877
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+.|..+.+.++.. + ..+..+|.-+.|.+.++++++..
T Consensus 77 T~P~~~~~n~~~~----~--~~gv~~ViGTTG~~~~~~~~l~~ 113 (275)
T TIGR02130 77 THPSAVNDNAAFY----G--KHGIPFVMGTTGGDREALAKLVA 113 (275)
T ss_pred CChHHHHHHHHHH----H--HCCCCEEEcCCCCCHHHHHHHHH
Confidence 7787777766544 2 33444555567888888766543
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.55 Score=42.68 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=53.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|.+.|. +|++.+|+++.++.+.+++ .+.....++.++.+ .+..+..+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~----~v~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGA----DVLIVARDADALAQARDEL-------AEEFPEREVHGLAADVSDDEDRRAI 78 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------HhhCCCCeEEEEECCCCCHHHHHHH
Confidence 56777775 8999999999999984 8999999987766554321 11111234544443 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.+||++.+
T Consensus 79 ~~~~-~~~~--g~id~li~~ag 97 (257)
T PRK09242 79 LDWV-EDHW--DGLHILVNNAG 97 (257)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6666 4444 33346776654
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.25 Score=47.48 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=48.7
Q ss_pred ccCCCCCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh-----hhcCcCC-Cc--------cccChHHH
Q psy316 57 VEHHVPMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFK-----LHWPEPM-DF--------ALNDNHRI 121 (341)
Q Consensus 57 ~~~~~~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~-----~~l~~~~-g~--------~~~s~~e~ 121 (341)
+++.+++.++|.|.|+ |-+|+.+++.|++.|+ +|++..|+.++. ..+.... .+ ...+..++
T Consensus 3 ~~~~~~~~~~vlVTGatGfIG~~l~~~L~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 3 VDVASPAGKTVCVTGAGGYIASWIVKILLERGY----TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred cccccCCCCEEEEECCCcHHHHHHHHHHHHCcC----EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 4456667788999987 9999999999999994 899888875532 1121100 11 11123455
Q ss_pred hhcCCEEEEee
Q psy316 122 IKEAEYVFLAM 132 (341)
Q Consensus 122 ~~~aDvIilaV 132 (341)
++.+|+||-+.
T Consensus 79 ~~~~d~Vih~A 89 (342)
T PLN02214 79 IDGCDGVFHTA 89 (342)
T ss_pred HhcCCEEEEec
Confidence 67899998775
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.56 Score=42.79 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=51.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+++ . ...++.++.+ .+..++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~---~~~~~~~~~~Dv~d~~~~~~~ 66 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA----RVVISSRNEENLEKALKEL-------K---EYGEVYAVKADLSDKDDLKNL 66 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------H---hcCCceEEEcCCCCHHHHHHH
Confidence 57888876 8899999999999994 8999999987765543321 0 0012222222 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|..++
T Consensus 67 ~~~~-~~~~--g~id~li~naG 85 (259)
T PRK08340 67 VKEA-WELL--GGIDALVWNAG 85 (259)
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7666 4433 22246776643
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.63 Score=43.04 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
.++|.|.|+ |.+|.++++.|++.|+ +|++.+|++++++.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~----~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH----RVVGTVRSEAARADFEA 46 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC----EEEEEeCCHHHHHHHHh
Confidence 356888876 9999999999999984 89999999887766544
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.17 Score=40.24 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc--CCCc-cccChHHHhhcCCEEEEeeChHHHHHH-HHHhhhccccc
Q psy316 76 AQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE--PMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA-IQGLVNDKVTL 151 (341)
Q Consensus 76 G~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~--~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v-l~~i~~~~l~~ 151 (341)
+-.|++.|.+.|. +|.++|+.-........ ..++ ...+..+.++.+|+||++++...+.++ .+++ ...+
T Consensus 19 ~~~l~~~L~~~g~----~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~-~~~~-- 91 (106)
T PF03720_consen 19 ALELIEELKERGA----EVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEI-AKLM-- 91 (106)
T ss_dssp HHHHHHHHHHTT-----EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHH-HHHS--
T ss_pred HHHHHHHHHHCCC----EEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHH-HHhc--
Confidence 4568899999995 99999986544332221 1245 567888999999999999998776652 3444 4445
Q ss_pred CCCcEEEEecC
Q psy316 152 NSSRCIISMLV 162 (341)
Q Consensus 152 ~~~~iIVs~~a 162 (341)
.++.+|+++-+
T Consensus 92 ~~~~~iiD~~~ 102 (106)
T PF03720_consen 92 RKPPVIIDGRN 102 (106)
T ss_dssp CSSEEEEESSS
T ss_pred CCCCEEEECcc
Confidence 57788888754
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.27 Score=47.10 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=48.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhh------hhhcCcC---CC-----c-cccChHHHhhcCC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERF------KLHWPEP---MD-----F-ALNDNHRIIKEAE 126 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~------~~~l~~~---~g-----~-~~~s~~e~~~~aD 126 (341)
+.++|.|-|+ |-+|+.|++.|++.| |.|...-|+++. +.++... +- + ...+..++++.||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG----Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG----YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC----CEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCC
Confidence 5678999987 999999999999999 599999998876 3333311 11 1 2345677899999
Q ss_pred EEEEe
Q psy316 127 YVFLA 131 (341)
Q Consensus 127 vIila 131 (341)
.||=+
T Consensus 81 gVfH~ 85 (327)
T KOG1502|consen 81 GVFHT 85 (327)
T ss_pred EEEEe
Confidence 99933
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.58 Score=42.73 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=51.7
Q ss_pred CCCeEEEEcc-c-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFIGA-G-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~-G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
..+++.|.|+ | .+|.++++.|++.|. +|++.+|++++++...++. .+......+.++.+ .+..+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~----~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~Dl~~~~~~ 84 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA----RVVISDIHERRLGETADEL-------AAELGLGRVEAVVCDVTSEAQV 84 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------HHhcCCceEEEEEccCCCHHHH
Confidence 3577888897 6 699999999999994 8999999877665433210 00001112333332 34567
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+++++ ...+ .+=.++|++.+
T Consensus 85 ~~~~~~~-~~~~--g~id~li~~ag 106 (262)
T PRK07831 85 DALIDAA-VERL--GRLDVLVNNAG 106 (262)
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7777665 4333 22246676644
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.21 Score=50.80 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=46.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh--hhhhcCcCC-Cc-c-cc-ChHHHhhcCCEEEEe--eCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER--FKLHWPEPM-DF-A-LN-DNHRIIKEAEYVFLA--MKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e--~~~~l~~~~-g~-~-~~-s~~e~~~~aDvIila--V~~ 134 (341)
++|.|||.|..|.++|+.|.+.|+ +|+++|.+.. ..+.|.+.. |+ . .. ...+.+..+|+||.+ +|+
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~----~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGA----RLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCC----EEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCC
Confidence 579999999999999999999994 9999997542 223343311 33 1 22 234556789999987 455
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.6 Score=42.40 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=53.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+++.|+|+ |.+|..+++.|++.|+ +|++.+|+++..+.+.++. .+..+.++.+ .+..+.+
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~----~V~~~~r~~~~~~~~~~~~-----------~~~~~~~~~~D~~~~~~~~~ 75 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGA----RVHVCDVSEAALAATAARL-----------PGAKVTATVADVADPAQVER 75 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-----------hcCceEEEEccCCCHHHHHH
Confidence 478999976 9999999999999984 8999999877665543321 1112233322 3455666
Q ss_pred HHHHhhhcccccCCCcEEEEecCCC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
+++++ ...+ .+-..||+..+..
T Consensus 76 ~~~~~-~~~~--~~~d~vi~~ag~~ 97 (264)
T PRK12829 76 VFDTA-VERF--GGLDVLVNNAGIA 97 (264)
T ss_pred HHHHH-HHHh--CCCCEEEECCCCC
Confidence 66665 4444 3335677665543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.44 Score=43.27 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.+++.|+|+ |.+|..+++.|++.|. +|++.+|++++.+.+..++ .+ ...++.++.+ .+..+.
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~~~~~ 67 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGF----KVAIVDYNEETAQAAADKL-------SK--DGGKAIAVKADVSDRDQVF 67 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCeEEEEECCCCCHHHHH
Confidence 4456777765 8999999999999984 8999999887766544321 00 0123334333 456677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++.++ ...+ .+=.++|++++
T Consensus 68 ~~~~~~-~~~~--~~id~vi~~ag 88 (256)
T PRK08643 68 AAVRQV-VDTF--GDLNVVVNNAG 88 (256)
T ss_pred HHHHHH-HHHc--CCCCEEEECCC
Confidence 777776 4433 23346676643
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.19 Score=50.38 Aligned_cols=62 Identities=19% Similarity=0.374 Sum_probs=45.1
Q ss_pred eEEEEcccHHHHH-HHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-cc-cChHHHhhcCCEEEEee
Q psy316 66 KVGFIGAGNMAQA-VATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-AL-NDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~~-~s~~e~~~~aDvIilaV 132 (341)
+|-|||.|..|.+ +|+.|.+.|+ +|+++|++.. ..+.|.+ .|+ .. ....+.+.++|+||.+-
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~----~v~~~D~~~~~~~~~l~~-~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY----QVSGSDIAENATTKRLEA-LGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC----eEEEECCCcchHHHHHHH-CcCEEeCCCCHHHCCCCCEEEECC
Confidence 4889999999998 9999999994 9999997543 3334544 476 32 23345567899998763
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.62 Score=43.72 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=52.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+.++
T Consensus 41 k~vlItGasggIG~~la~~La~~G~----~Vi~~~R~~~~l~~~~~~l-------~~--~~~~~~~~~~Dl~d~~~v~~~ 107 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGA----TVVAVARREDLLDAVADRI-------TR--AGGDAMAVPCDLSDLDAVDAL 107 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHHHH
Confidence 56777776 9999999999999984 9999999988776554321 00 0123333332 34566777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+ ...+ .+=.++|++++
T Consensus 108 ~~~~-~~~~--g~id~li~~AG 126 (293)
T PRK05866 108 VADV-EKRI--GGVDILINNAG 126 (293)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7766 4444 33346776644
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.62 Score=42.53 Aligned_cols=84 Identities=7% Similarity=0.031 Sum_probs=51.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+.+.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.++ ..+......+.++.+ .+..+.++
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v~~~ 77 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA----SVAICGRDEERLASAEAR-------LREKFPGARLLAARCDVLDEADVAAF 77 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHH-------HHhhCCCceEEEEEecCCCHHHHHHH
Confidence 45666666 7899999999999995 899999998776654332 111111123444433 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|.+++
T Consensus 78 ~~~~-~~~~--g~id~li~~Ag 96 (265)
T PRK07062 78 AAAV-EARF--GGVDMLVNNAG 96 (265)
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7766 4433 22246776643
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.8 Score=41.40 Aligned_cols=162 Identities=18% Similarity=0.137 Sum_probs=90.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhh-hcCcC--C-------------C---c--cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKL-HWPEP--M-------------D---F--ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~-~l~~~--~-------------g---~--~~~s~~e 120 (341)
.++.++|+|..+--+|--|..+|. .++-+++|-. +++. .++.. + | + ...+.++
T Consensus 5 ~~vLllGtGpvaIQlAv~l~~h~d---~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~ 81 (431)
T COG4408 5 LPVLLLGTGPVAIQLAVDLSAHGD---ARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQ 81 (431)
T ss_pred cceeEeecCcHHHHHHHHHHhccC---ceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHH
Confidence 579999999999999999988884 6888888732 2222 22211 0 1 1 2345567
Q ss_pred HhhcCCEEEEeeChHHHHHHHHHhhhc-ccccCCCcEEEEecCCCC--HHHHHHhccc------cCCCCCCCCeEEEE-c
Q psy316 121 IIKEAEYVFLAMKPQYLDSAIQGLVND-KVTLNSSRCIISMLVGVD--LETLKKKLSV------LVPNPNDAPTIIRV-M 190 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~v~~vl~~i~~~-~l~~~~~~iIVs~~agi~--~~~l~~~l~~------~~~~~~~~~~vvr~-m 190 (341)
+..+=+-+|+|||.++..+|+++| -. .|..-+..++||-.=|.. ++.+...++. +-.=..+++ +++. -
T Consensus 82 ~~~dwqtlilav~aDaY~dvlqqi-~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk-~id~~~ 159 (431)
T COG4408 82 AVGDWQTLILAVPADAYYDVLQQI-PWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTK-YIDAEQ 159 (431)
T ss_pred hhchhheEEEEeecHHHHHHHhcC-CHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccce-eecccC
Confidence 777889999999999999999886 32 230013335555432322 2222222220 000001334 4432 2
Q ss_pred CCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 191 PNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 191 pn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
||..-..+-...+..++...+. ...+.+..+|...|..++.
T Consensus 160 p~~alTkavKkriYlgs~~~ns--~~~e~l~~v~aq~~I~v~~ 200 (431)
T COG4408 160 PNRALTKAVKKRIYLGSQHGNS--GSAEMLTAVLAQHGIDVEP 200 (431)
T ss_pred cchHHHHHHhHheeeccCCCCC--hHHHHHHHHHHhcCCceEE
Confidence 4433221111122233333334 6778899999999987654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.64 Score=42.79 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=35.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
|.+++.|.|+ |.+|..+++.|++.|. +|++..|++++++.+.+
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~~g~----~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLARGD----RVAATVRRPDALDDLKA 44 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH
Confidence 4567888875 9999999999999984 89999999877665544
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.51 Score=45.39 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=51.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC---ChhhhhhcCcCCCc-cccCh----HH--HhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP---SERFKLHWPEPMDF-ALNDN----HR--IIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r---~~e~~~~l~~~~g~-~~~s~----~e--~~~~aDvIilaV~ 133 (341)
..++.|+|+|.+|...++.+...|. +|++++| ++++.+.+++ +|+ ..... .+ .....|+||-++-
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~----~vi~~~~~~~~~~~~~~~~~-~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF----EVYVLNRRDPPDPKADIVEE-LGATYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----eEEEEecCCCCHHHHHHHHH-cCCEEecCCccchhhhhhcCCCCEEEECcC
Confidence 3579999999999998887777774 7888887 5677765554 776 22111 11 1235799999996
Q ss_pred h-HHHHHHHHHh
Q psy316 134 P-QYLDSAIQGL 144 (341)
Q Consensus 134 ~-~~v~~vl~~i 144 (341)
. ..+.+.++-+
T Consensus 248 ~~~~~~~~~~~l 259 (355)
T cd08230 248 VPPLAFEALPAL 259 (355)
T ss_pred CHHHHHHHHHHc
Confidence 4 4455555444
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.19 Score=51.87 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=33.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
.++|.|.|+ |.+|..+++.|++.|+ +|+++.|+.++++.+
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~----~Vval~Rn~ekl~~l 120 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGF----RVRAGVRSAQRAESL 120 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHH
Confidence 456778876 9999999999999994 999999998876543
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.71 Score=42.04 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=34.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
+++.|+|+ |.+|.++++.|++.|. +|++.+|+++..+.+..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW----RVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHH
Confidence 46888875 9999999999999984 89999999887766544
|
|
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.34 Score=43.12 Aligned_cols=90 Identities=9% Similarity=0.175 Sum_probs=58.0
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|.+...|-|.| -+|.++++.|.++|. +|.+.+++.+.++..+..++.. ..-..-.||+ -++.+++..+
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Ga----rv~v~dl~~~~A~ata~~L~g~---~~h~aF~~DV----S~a~~v~~~l 81 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGA----RVAVADLDSAAAEATAGDLGGY---GDHSAFSCDV----SKAHDVQNTL 81 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCc----EEEEeecchhhHHHHHhhcCCC---Cccceeeecc----CcHHHHHHHH
Confidence 33344455554 699999999999994 9999999877666554433321 0011123443 3577888888
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
++. ...+ .+-.++|++ +|++-+
T Consensus 82 ~e~-~k~~--g~psvlVnc-AGItrD 103 (256)
T KOG1200|consen 82 EEM-EKSL--GTPSVLVNC-AGITRD 103 (256)
T ss_pred HHH-HHhc--CCCcEEEEc-Cccccc
Confidence 887 6666 555688877 677643
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.22 Score=37.24 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.1
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
||.|||.|..|.-+|..|.+.|. +|+++.|++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~----~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK----EVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS----EEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc----EEEEEeccchh
Confidence 68999999999999999999884 99999987643
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.19 Score=46.60 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=36.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
|.+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~----~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW----RVFATCRKEEDVAALEA 46 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH
Confidence 5567888887 9999999999999984 99999999887766544
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.16 Score=49.52 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|.++|.|||+|..|.++|..|.+.|+ +|++++|+++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~----~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI----KVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC----cEEEEeeCcc
Confidence 45789999999999999999999995 8999998754
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.34 Score=47.66 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=32.4
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 62 PMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 62 ~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
...+||.|+|+ |.+|+.+++.|++.|+ +|++..|++.+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~----~V~~l~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY----NVVAVAREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEEechhh
Confidence 34578999986 9999999999999984 99999998754
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.28 Score=46.12 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=45.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----ccc---ChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALN---DNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~---s~~e~~~~aDvIilaV 132 (341)
|+|.|.|+ |-+|..+++.|++.| ++|++.+|+++....+.. .++ -.. +..++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG----EEVRVLVRPTSDRRNLEG-LDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC----CEEEEEEecCcccccccc-CCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 47999985 999999999999998 499999998766544432 232 112 2345566889998765
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.64 Score=41.80 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=51.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|+|+ |.+|..+++.|++.|+ +|++.+|++++.+.+..++. . ..++.++.. .+..+..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~----~V~~~~r~~~~~~~~~~~~~-------~---~~~~~~~~~D~~~~~~~~~~ 71 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGA----RVVVTDRNEEAAERVAAEIL-------A---GGRAIAVAADVSDEADVEAA 71 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHHh-------c---CCeEEEEECCCCCHHHHHHH
Confidence 57889986 9999999999999984 89999999876654433110 0 223444433 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ .+.+ .+=..||++++
T Consensus 72 ~~~~-~~~~--~~~d~vi~~ag 90 (251)
T PRK07231 72 VAAA-LERF--GSVDILVNNAG 90 (251)
T ss_pred HHHH-HHHh--CCCCEEEECCC
Confidence 6655 3333 22236666543
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.57 Score=42.10 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=51.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|++.|. +|++.+|++++.+.+.++ ..+ ...++.++.+ .+..+..+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~ 73 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGW----DLALVARSQDALEALAAE-------LRS--TGVKAAAYSIDLSNPEAIAPG 73 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHH-------HHh--CCCcEEEEEccCCCHHHHHHH
Confidence 56788875 9999999999999984 899999998766554331 001 1123444443 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+ ...+ .+=.++|++.+
T Consensus 74 ~~~~-~~~~--~~id~lv~~ag 92 (241)
T PRK07454 74 IAEL-LEQF--GCPDVLINNAG 92 (241)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6665 4333 22246666543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.95 Score=40.59 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=33.2
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH 106 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~ 106 (341)
|.++|.|.| +|.+|.++++.|++.|. +|++.+|++++...
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~----~V~~~~r~~~~~~~ 45 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA----EVIVVDICGDDAAA 45 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC----EEEEEeCCHHHHHH
Confidence 456899998 59999999999999984 89999998765543
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.6 Score=41.85 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v~~ 139 (341)
..||.+-|. |.-|+..++.+++.|. .-|...++...--+ +.. +|+ .+.+..|+.+. +|+.+++||+..+.+
T Consensus 29 ~t~v~vqGitg~~g~~h~~~~~~ygt---~iv~GV~Pgkgg~~-v~~-~Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~d 103 (317)
T PTZ00187 29 NTKVICQGITGKQGTFHTEQAIEYGT---KMVGGVNPKKAGTT-HLK-HGLPVFATVKEAKKATGADASVIYVPPPHAAS 103 (317)
T ss_pred CCeEEEecCCChHHHHHHHHHHHhCC---cEEEEECCCCCCce-Eec-CCccccCCHHHHhcccCCCEEEEecCHHHHHH
Confidence 468999998 9999999999999994 22334544320011 111 377 78888888876 999999999999888
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
++.+.....+ +.+|-++.|++..
T Consensus 104 ai~Ea~~aGI-----~~~ViiteGfpe~ 126 (317)
T PTZ00187 104 AIIEAIEAEI-----PLVVCITEGIPQH 126 (317)
T ss_pred HHHHHHHcCC-----CEEEEECCCCchh
Confidence 8877612222 3555567888754
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.9 Score=40.65 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=51.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
|.++|.|+|+ |.+|..+++.|++.|+ +|++. +|++++.+.+.+.+ .. ....+.++.+ .+..+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~----~v~~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~ 70 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGA----KVVIAYDINEEAAQELLEEI-------KE--EGGDAIAVKADVSSEEDV 70 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEcCCCHHHHHHHHHHH-------Hh--cCCeEEEEECCCCCHHHH
Confidence 4567889976 9999999999999884 88887 99877655443310 00 1223444443 24556
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..++.++ ...+ .+=..||+..+
T Consensus 71 ~~~~~~~-~~~~--~~id~vi~~ag 92 (247)
T PRK05565 71 ENLVEQI-VEKF--GKIDILVNNAG 92 (247)
T ss_pred HHHHHHH-HHHh--CCCCEEEECCC
Confidence 6666655 3323 22246666544
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.93 Score=41.68 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=51.2
Q ss_pred CCCeE-EEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKV-GFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kI-giIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
|..|+ .|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....++.++.+ .+..+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~-~~~~~~~~~~~Dv~~~~~i 73 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA----DVILLSRNEENLKKAREKI-------KS-ESNVDVSYIVADLTKREDL 73 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh-hcCCceEEEEecCCCHHHH
Confidence 44444 55565 7899999999999994 8999999988766554321 00 01234444433 35567
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+++++ .. + .+=.++|+.++
T Consensus 74 ~~~~~~~-~~-~--g~iD~lv~nag 94 (263)
T PRK08339 74 ERTVKEL-KN-I--GEPDIFFFSTG 94 (263)
T ss_pred HHHHHHH-Hh-h--CCCcEEEECCC
Confidence 7777766 43 2 22235666543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.26 Score=46.28 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh---hcCc-CC----Cc--cccCh---HHHhhcCCEEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL---HWPE-PM----DF--ALNDN---HRIIKEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~---~l~~-~~----g~--~~~s~---~e~~~~aDvIil 130 (341)
..||+|||.|.+-....--....+ ....|..+|++++..+ ++.+ .. +. .+.+. ...+.+.|+|++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~--~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHG--PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HT--T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 458999999998755433222222 2246888999987544 2222 11 22 22232 223568999999
Q ss_pred eeChH----HHHHHHHHhhhcccccCCCcEEE
Q psy316 131 AMKPQ----YLDSAIQGLVNDKVTLNSSRCII 158 (341)
Q Consensus 131 aV~~~----~v~~vl~~i~~~~l~~~~~~iIV 158 (341)
|--.. .-.+++..+ ..++ ++|..|+
T Consensus 199 AalVg~~~e~K~~Il~~l-~~~m--~~ga~l~ 227 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHL-AKHM--APGARLV 227 (276)
T ss_dssp -TT-S----SHHHHHHHH-HHHS---TTSEEE
T ss_pred hhhcccccchHHHHHHHH-HhhC--CCCcEEE
Confidence 97544 556888888 8888 7887655
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.18 Score=49.53 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=30.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
.+|.|||+|-+|.++|..|.+.|+ +|++++|+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~----~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY----QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEEeCCC
Confidence 489999999999999999999984 999999874
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.2 Score=40.49 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=52.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++.+.+.+++ .+ ....+.++.+ .+..+..
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~i-------~~--~~~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA----EVILNGRDPAKLAAAAESL-------KG--QGLSAHALAFDVTDHDAVRA 76 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCceEEEEEccCCCHHHHHH
Confidence 367888876 9999999999999994 8999999987655433210 00 0123333332 3556777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.+||+..+
T Consensus 77 ~~~~~-~~~~--~~~d~li~~ag 96 (255)
T PRK07523 77 AIDAF-EAEI--GPIDILVNNAG 96 (255)
T ss_pred HHHHH-HHhc--CCCCEEEECCC
Confidence 77666 4433 33346776654
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.49 Score=46.96 Aligned_cols=100 Identities=13% Similarity=0.026 Sum_probs=59.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCC----------hhhhhhcCcCCC-------ccccChHHHh-hc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPS----------ERFKLHWPEPMD-------FALNDNHRII-KE 124 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~----------~e~~~~l~~~~g-------~~~~s~~e~~-~~ 124 (341)
.++|+|.|.|++|+..++.|.+.|. +|+ ++|.+ .+.+.+.+++.+ ...-++.+++ .+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~ 281 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGG----KIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEP 281 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----EEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceecc
Confidence 4799999999999999999999985 665 77876 544433222211 1111334443 38
Q ss_pred CCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 125 aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
|||++-|--...+.+ +. .+.+ +-++|+--+|+-....-.+.|.
T Consensus 282 ~DvliP~Al~~~I~~---~n-a~~i---~ak~I~egAN~p~t~ea~~~L~ 324 (410)
T PLN02477 282 CDVLIPAALGGVINK---EN-AADV---KAKFIVEAANHPTDPEADEILR 324 (410)
T ss_pred ccEEeeccccccCCH---hH-HHHc---CCcEEEeCCCCCCCHHHHHHHH
Confidence 999998854333221 11 2223 3457787766544333444554
|
|
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=11 Score=38.90 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHhCCCCCCCCcccccccccc-------ccCCCCCcCCCCCCCCccc----------CCC-CCCCeEEEE
Q psy316 9 AYDETMRIIIKAAADPVKKSDTVTEDSESEQ-------HTGARPVRKSDMGMEDSVE----------HHV-PMWTKVGFI 70 (341)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----------~~~-~m~~kIgiI 70 (341)
.|++-|..+|++....-.+-=-+-||=.... -+..-|+-+-|.-+|-.+. .+. .-..||.|.
T Consensus 224 eY~~f~defv~av~~~~P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~ 303 (559)
T PTZ00317 224 EYYELLDEFMEAVSSRWPNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFF 303 (559)
T ss_pred hHHHHHHHHHHHHHHhCCCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEE
Confidence 4677777777755544333344566654433 1344677777775541100 000 123689999
Q ss_pred cccHHHHHHHHHHHh----cCCCCC----CeEEEEcCCh----hh---hh----hcCcCCC-c---cccChHHHhhcC--
Q psy316 71 GAGNMAQAVATSLIR----TGLCIP----AQIIASAPSE----RF---KL----HWPEPMD-F---ALNDNHRIIKEA-- 125 (341)
Q Consensus 71 G~G~mG~aia~~L~~----~G~~~~----~~V~v~~r~~----e~---~~----~l~~~~g-~---~~~s~~e~~~~a-- 125 (341)
|+|.-|..+++.|.+ .|+ .. .+++++|+.- .+ +. .++.... . ...++.|+++..
T Consensus 304 GAGsAgiGia~ll~~~m~~~Gl-s~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KP 382 (559)
T PTZ00317 304 GAGSAAIGVANNIADLAAEYGV-TREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKP 382 (559)
T ss_pred CCCHHHHHHHHHHHHHHHHcCC-ChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCC
Confidence 999999999998874 674 21 4788887631 11 11 1222110 0 145788888876
Q ss_pred CEEEE-eeCh-HHHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhcc
Q psy316 126 EYVFL-AMKP-QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKLS 174 (341)
Q Consensus 126 DvIil-aV~~-~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l~ 174 (341)
|++|= +..+ -.-+++++.+ ..+. +..||..+++..+ .+...+|..
T Consensus 383 tvLIG~S~~~g~Ft~evv~~M-a~~~---~rPIIFaLSNPt~~aE~tpeda~~~T~ 434 (559)
T PTZ00317 383 TALLGLSGVGGVFTEEVVKTM-ASNV---ERPIIFPLSNPTSKAECTAEDAYKWTN 434 (559)
T ss_pred CEEEEecCCCCCCCHHHHHHH-HhcC---CCCEEEECCCCCCCCCcCHHHHHhhcc
Confidence 88883 3334 3567788888 6653 6778999988874 455555543
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.27 Score=48.21 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=36.0
Q ss_pred CcccCCCCCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 55 DSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 55 ~~~~~~~~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|.++...+..++|.|||+|.-|.++|..|.+.|+ +|+++++.+.
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~----~v~v~E~~~~ 52 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGL----RIALIEAQPA 52 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCC----EEEEEecCCc
Confidence 3444455566789999999999999999999995 9999998654
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.35 Score=50.94 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=31.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..++|+|||+|..|.+.|..|.+.|+ +|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~----~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV----AVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----eEEEEecCC
Confidence 35789999999999999999999995 899998864
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.35 Score=46.86 Aligned_cols=72 Identities=15% Similarity=0.322 Sum_probs=48.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh-hhcCcCCCc--ccc---ChHHHhhcCCEEEE---eeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFK-LHWPEPMDF--ALN---DNHRIIKEAEYVFL---AMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~-~~l~~~~g~--~~~---s~~e~~~~aDvIil---aV~~~ 135 (341)
++|||||.|-+|..|+..=..-|+ ++++.+.+++.- .++++. -+ ..+ ...++++.||+|=. -||.+
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~----~v~vLdp~~~~PA~~va~~-~i~~~~dD~~al~ela~~~DViT~EfE~V~~~ 76 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGI----KVIVLDPDADAPAAQVADR-VIVAAYDDPEALRELAAKCDVITYEFENVPAE 76 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCC----EEEEecCCCCCchhhcccc-eeecCCCCHHHHHHHHhhCCEEEEeeccCCHH
Confidence 689999999999999988888784 999999876543 344432 22 223 24566778998843 34555
Q ss_pred HHHHHH
Q psy316 136 YLDSAI 141 (341)
Q Consensus 136 ~v~~vl 141 (341)
.+..+.
T Consensus 77 aL~~l~ 82 (375)
T COG0026 77 ALEKLA 82 (375)
T ss_pred HHHHHH
Confidence 544443
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.48 Score=43.31 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=33.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
+++-|+|+ |.+|.++++.|++.|. +|++.+|++++++.+.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGA----RVAVLDKSAAGLQELEA 47 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHh
Confidence 45666665 8899999999999994 89999998877766544
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.26 Score=49.37 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=47.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh----hhcCcCCCc--cc-cChHHHhhcCCEEEEe--eCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFK----LHWPEPMDF--AL-NDNHRIIKEAEYVFLA--MKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~----~~l~~~~g~--~~-~s~~e~~~~aDvIila--V~~ 134 (341)
.+||.|+|+|.-|.+.++.|.+.|. +|+++|.++... ..+.. .++ .. ..+.+....+|+|+++ +|+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~----~v~v~D~~~~~~~~~~~~~~~-~~i~~~~g~~~~~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA----EVTVSDDRPAPEGLAAQPLLL-EGIEVELGSHDDEDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC----eEEEEcCCCCccchhhhhhhc-cCceeecCccchhccccCCEEEECCCCCC
Confidence 6899999999999999999999994 999999665441 11112 243 11 1222557789999987 454
Q ss_pred H
Q psy316 135 Q 135 (341)
Q Consensus 135 ~ 135 (341)
.
T Consensus 82 ~ 82 (448)
T COG0771 82 T 82 (448)
T ss_pred C
Confidence 3
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.86 Score=41.87 Aligned_cols=85 Identities=8% Similarity=0.074 Sum_probs=52.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+++.|.|+ |.+|..+++.|++.|+ +|++++|++++.+.+.+++. .......+.++.+ .+..+..
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~~Dl~~~~~~~~ 75 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA----AVMIVGRNPDKLAAAAEEIE-------ALKGAGAVRYEPADVTDEDQVAR 75 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHHH-------hccCCCceEEEEcCCCCHHHHHH
Confidence 367888886 8999999999999994 89999998776654433110 0000123444433 3455666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|++.+
T Consensus 76 ~~~~~-~~~~--~~~d~li~~ag 95 (276)
T PRK05875 76 AVDAA-TAWH--GRLHGVVHCAG 95 (276)
T ss_pred HHHHH-HHHc--CCCCEEEECCC
Confidence 66665 4333 23346666654
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.77 Score=41.56 Aligned_cols=83 Identities=7% Similarity=0.055 Sum_probs=51.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.++|.|.|+ |.+|.++++.|++.|. +|++.+|+++..+.+.++. .. ...++.++.+ .+..+..
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~ 71 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA----DVVLAARTAERLDEVAAEI-------DD--LGRRALAVPTDITDEDQCAN 71 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------HH--hCCceEEEecCCCCHHHHHH
Confidence 467777765 8999999999999994 8999999987665543321 00 0122333332 3456666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.+||++.+
T Consensus 72 ~~~~~-~~~~--g~~d~vi~~ag 91 (258)
T PRK07890 72 LVALA-LERF--GRVDALVNNAF 91 (258)
T ss_pred HHHHH-HHHc--CCccEEEECCc
Confidence 66665 4333 22246676643
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.37 Score=50.62 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..+||+|||+|..|.+.|..|.+.|+ +|+++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~----~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV----QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC----cEEEEeCCC
Confidence 46899999999999999999999985 899998875
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.69 Score=41.78 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=33.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
..+++-|+|+ |.+|..+++.|++.|. +|++.+|+++..+.+.
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~----~Vi~~~r~~~~~~~~~ 53 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGA----TVILLGRTEEKLEAVY 53 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----cEEEEeCCHHHHHHHH
Confidence 3467777755 8999999999999884 8999999987765543
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.2 Score=41.09 Aligned_cols=82 Identities=9% Similarity=0.053 Sum_probs=51.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|++.|. +|++++|+.+.++.+.+++ . ....++.++.. .+..+.++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~--~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGM----KLVLADVQQDALDRAVAEL-------R--AQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCC----EEEEEeCChHHHHHHHHHH-------H--hcCCeEEEEECCCCCHHHHHHH
Confidence 46777765 8999999999999994 8999999877655443310 0 01234444443 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ .... .+=.+||++++
T Consensus 74 ~~~~-~~~~--g~id~vi~~Ag 92 (287)
T PRK06194 74 ADAA-LERF--GAVHLLFNNAG 92 (287)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7665 4433 33347777654
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.73 Score=42.46 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
+++.|+|+ |.+|.++++.|++.|+ +|++++|+++..+.+.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~----~V~~~~r~~~~~~~~~ 44 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY----LVIATMRNPEKQENLL 44 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC----EEEEEeCCHHHHHHHH
Confidence 44666664 9999999999999984 8999999887665543
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.66 Score=39.05 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=48.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.++|.|+|- ...|..++..|.+.|. .|++++++- .+.++.+++||+|+.++....+ ++
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~ga----tV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~---i~ 86 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGA----TVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEK---VP 86 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----EEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCc---cC
Confidence 467777776 4567777777777663 777776431 1466788999999999964432 22
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ ++|.+|+++
T Consensus 87 ---~~~i--kpGa~Vidv 99 (140)
T cd05212 87 ---TEWI--KPGATVINC 99 (140)
T ss_pred ---HHHc--CCCCEEEEc
Confidence 2246 789898866
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.43 Score=46.54 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=44.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------CCc--c---cc---ChHHHhhcCCEE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------MDF--A---LN---DNHRIIKEAEYV 128 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------~g~--~---~~---s~~e~~~~aDvI 128 (341)
.|||.|.|+ |-+|+.+++.|++.|. ++|++.+|+.++...+... .++ . .. +..++++.+|+|
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g---~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETP---HKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCC---CEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 468999985 9999999999999841 4899999876655443221 012 1 11 234456689999
Q ss_pred EEee
Q psy316 129 FLAM 132 (341)
Q Consensus 129 ilaV 132 (341)
|=+.
T Consensus 91 iHlA 94 (386)
T PLN02427 91 INLA 94 (386)
T ss_pred EEcc
Confidence 8443
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.95 Score=41.57 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=54.5
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHHH
Q psy316 66 KVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAIQ 142 (341)
Q Consensus 66 kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl~ 142 (341)
||.+| |+ .-+|.++|+.|.++|+ +|.+..|+.++++.|+.+++ . ..+..+.+=|. +..+...++
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~----~vvl~aRR~drL~~la~~~~----~-----~~~~~~~~DVtD~~~~~~~i~ 73 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA----KVVLAARREERLEALADEIG----A-----GAALALALDVTDRAAVEAAIE 73 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC----eEEEEeccHHHHHHHHHhhc----c-----CceEEEeeccCCHHHHHHHHH
Confidence 56666 76 6799999999999995 99999999999999988644 1 12222223333 346777777
Q ss_pred HhhhcccccCCCcEEEEec
Q psy316 143 GLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ 161 (341)
.+ ...+ .+=.++|..+
T Consensus 74 ~~-~~~~--g~iDiLvNNA 89 (246)
T COG4221 74 AL-PEEF--GRIDILVNNA 89 (246)
T ss_pred HH-HHhh--CcccEEEecC
Confidence 66 4444 3334677653
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.44 Score=46.54 Aligned_cols=62 Identities=15% Similarity=0.327 Sum_probs=42.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCc-cccC---hHHHhhcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDF-ALND---NHRIIKEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~-~~~s---~~e~~~~aDvIil 130 (341)
++|||||.|.+|..++....+.|+ +|++++.++.. ...+.++.-+ ...| ..+.++.+|+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~----~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGY----KVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC----EEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 589999999999999999999885 89999887543 3333332111 2223 3345667887654
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.2 Score=40.75 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+|.|+|+ |.+|..+++.|.+.|. +|++.+|+.++++.+.+++ . ....++.++.+ .+..+.++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~----~V~~~~r~~~~~~~~~~~l-------~--~~~~~~~~~~~D~~~~~~~~~~ 67 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW----RLALADVNEEGGEETLKLL-------R--EAGGDGFYQRCDVRDYSQLTAL 67 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------H--hcCCceEEEEccCCCHHHHHHH
Confidence 46888875 9999999999999984 8999999887665443210 0 01223433333 34556666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+..+ ...+ .+=.+||+..+
T Consensus 68 ~~~i-~~~~--~~id~lI~~ag 86 (270)
T PRK05650 68 AQAC-EEKW--GGIDVIVNNAG 86 (270)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6665 4433 22246776644
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.4 Score=39.58 Aligned_cols=81 Identities=7% Similarity=0.071 Sum_probs=51.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|++.|+ +|++..|+.+..+...++. .....+.++.+ .+..+.++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~----------~~~~~~~~~~~D~~~~~~~~~~ 71 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGA----RVVVADRDAEAAERVAAAI----------AAGGRAFARQGDVGSAEAVEAL 71 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC----eEEEecCCHHHHHHHHHHH----------hcCCeEEEEEcCCCCHHHHHHH
Confidence 57888876 9999999999999984 8999999876655433210 01122333322 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++.+
T Consensus 72 ~~~i-~~~~--~~id~vi~~ag 90 (252)
T PRK06138 72 VDFV-AARW--GRLDVLVNNAG 90 (252)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7766 5444 33346777654
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.2 Score=42.92 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=56.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChH---------HHhh-cCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNH---------RIIK-EAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~---------e~~~-~aDvIilaV 132 (341)
-+++|+|+|.+|-+-..+...+|. ..|+..|.++++++..++ +|. ..+..+ ++.. .+|..|-|+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA---~~IiAvD~~~~Kl~~A~~-fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~ 262 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGA---GRIIAVDINPEKLELAKK-FGATHFVNPKEVDDVVEAIVELTDGGADYAFECV 262 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCC---ceEEEEeCCHHHHHHHHh-cCCceeecchhhhhHHHHHHHhcCCCCCEEEEcc
Confidence 579999999999999999999884 689999999999876665 887 333221 1222 588999888
Q ss_pred C-hHHHHHHHHHh
Q psy316 133 K-PQYLDSAIQGL 144 (341)
Q Consensus 133 ~-~~~v~~vl~~i 144 (341)
- ...+++.+.-.
T Consensus 263 G~~~~~~~al~~~ 275 (366)
T COG1062 263 GNVEVMRQALEAT 275 (366)
T ss_pred CCHHHHHHHHHHH
Confidence 4 56666666544
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.93 Score=41.07 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=51.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|++.|. +|.+.+|++++.+.+.+++ .+ ..+++.++.. .+..+.++
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGA----AVAIADLNQDGANAVADEI-------NK--AGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHH-------Hh--cCceEEEEECCCCCHHHHHHH
Confidence 56788877 9999999999999994 8999999887665543321 00 0123333332 34556666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+-.+||++.+
T Consensus 75 ~~~~-~~~~--~~~d~vi~~ag 93 (262)
T PRK13394 75 IDKV-AERF--GSVDILVSNAG 93 (262)
T ss_pred HHHH-HHHc--CCCCEEEECCc
Confidence 6665 4433 33346777654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.74 Score=41.34 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=52.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|+|+ |.+|..+++.|.+.|+ +|++.+|++++++.+.+++ .. ...++.++.+ .+..+..+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGA----TVAFNDGLAAEARELAAAL-------EA--AGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHHHH
Confidence 67888886 9999999999999984 8988899887766543310 00 1123444433 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++++ ...+ .+-.+||++.+.
T Consensus 75 ~~~~-~~~~--~~id~vi~~ag~ 94 (250)
T PRK12939 75 FDAA-AAAL--GGLDGLVNNAGI 94 (250)
T ss_pred HHHH-HHHc--CCCCEEEECCCC
Confidence 6665 4433 233467766543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.62 Score=42.08 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=50.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.| .|.+|..+++.|++.|+ +|++.+|++++.+.+..+. .. ....+.++.+ .+..+.++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGA----KVVIADLNDEAAAAAAEAL-------QK--AGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEcCCCCHHHHHHH
Confidence 5688887 59999999999999984 9999999987766543321 00 0112222221 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+-.+||++++
T Consensus 72 ~~~~-~~~~--~~~d~vi~~a~ 90 (258)
T PRK12429 72 IDYA-VETF--GGVDILVNNAG 90 (258)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6666 4443 33346666543
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.68 Score=49.36 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=62.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh----hh---hh----hcCcCCCccccChHHHhhcCCEEE-Eee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE----RF---KL----HWPEPMDFALNDNHRIIKEAEYVF-LAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~----e~---~~----~l~~~~g~~~~s~~e~~~~aDvIi-laV 132 (341)
.||.|.|+|.-|.++++.|...|. +..+|+++|+.- .+ +. .+++.. ...++.|+++.+|++| ++.
T Consensus 190 ~~iv~~GAGaAg~~ia~~l~~~G~-~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~advliG~S~ 266 (764)
T PRK12861 190 VKVVTSGAGAAALACLDLLVDLGL-PVENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGADVFLGLSA 266 (764)
T ss_pred cEEEEECHhHHHHHHHHHHHHcCC-ChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCCEEEEcCC
Confidence 689999999999999999999994 445899988421 11 11 122211 2247899999999877 333
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+.-.-+++++.+ .++.+|..+++..+
T Consensus 267 ~g~ft~e~v~~M-------a~~PIIFaLsNPtp 292 (764)
T PRK12861 267 GGVLKAEMLKAM-------AARPLILALANPTP 292 (764)
T ss_pred CCCCCHHHHHHh-------ccCCEEEECCCCCc
Confidence 323345677666 45678899988874
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.3 Score=41.90 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=48.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
..+|+|||.-.--..+++.|.+.|+ +|.++.-..+. ... -|+ ...+.++++.++|+|++.+|+
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~----~v~~~g~~~~~---~~~-~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGA----KVSLVGFDQLD---HGF-TGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCC----EEEEEeccccc---ccc-CCceeeccHHHHhccCCEEEECCcc
Confidence 4689999999989999999999995 88886543211 112 266 566777889999999999886
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.45 Score=47.57 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=45.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh--hhhhcCcC-CCc-c-c-cChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER--FKLHWPEP-MDF-A-L-NDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e--~~~~l~~~-~g~-~-~-~s~~e~~~~aDvIilaV 132 (341)
-.|.|||.|..|.++|+.|.+.|+ +|+++|+.+. ..+.|.++ .|+ . . ....+.+.++|+||.+-
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~----~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGI----PFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP 76 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCC----eEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence 469999999999999999999994 9999997542 22345442 265 3 2 12345567899888763
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.96 Score=41.54 Aligned_cols=79 Identities=11% Similarity=0.134 Sum_probs=50.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe-eChHHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA-MKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila-V~~~~v~~vl~ 142 (341)
+++.|.|+ |.+|..+++.|.+.|. +|.+.+|++++++.+.++.+ ...++..= ..++.+.++++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~~ 70 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGA----RVAIGDLDEALAKETAAELG-----------LVVGGPLDVTDPASFAAFLD 70 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhc-----------cceEEEccCCCHHHHHHHHH
Confidence 56788876 9999999999999984 89999999887765543211 11111111 24566777777
Q ss_pred HhhhcccccCCCcEEEEec
Q psy316 143 GLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ 161 (341)
++ ...+ .+=.++|+..
T Consensus 71 ~~-~~~~--~~id~li~~a 86 (273)
T PRK07825 71 AV-EADL--GPIDVLVNNA 86 (273)
T ss_pred HH-HHHc--CCCCEEEECC
Confidence 66 4433 2334667654
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.3 Score=44.11 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=41.2
Q ss_pred CCCeEEEEcc--cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 63 MWTKVGFIGA--GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 63 m~~kIgiIG~--G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
-.++|.|.|| |-+|.++++-+.++|+ .|+.+.|+.+...+|..++|+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~----~V~AtaR~~e~M~~L~~~~gl 54 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY----LVYATARRLEPMAQLAIQFGL 54 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe----EEEEEccccchHhhHHHhhCC
Confidence 3578999999 9999999999999995 999999999999988865665
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.58 Score=49.74 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhhhc---------------CcC---C----Cc-----
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKLHW---------------PEP---M----DF----- 113 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~~l---------------~~~---~----g~----- 113 (341)
..||+|||+| +|+.++..|..+|.+ .+++++|.+. .++.+. ++. . .+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvv--G~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLC--GELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCC--CeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4789999999 999999999999831 3666665532 111111 100 0 11
Q ss_pred -cc-cChHHHhhcCCEEEEeeChHHHHHHHHHh
Q psy316 114 -AL-NDNHRIIKEAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 114 -~~-~s~~e~~~~aDvIilaV~~~~v~~vl~~i 144 (341)
.. .+..+.++++|+||=|+-.-..+-.+.+.
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 01 13345677899999999766666555543
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.1 Score=40.50 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=51.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++.+.+.+++ .+ ....+.++.+ .+..+.++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~----~vvl~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~Dl~~~~~~~~~ 76 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGA----EIIINDITAERAELAVAKL-------RQ--EGIKAHAAPFNVTHKQEVEAA 76 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC----EEEEEcCCHHHHHHHHHHH-------Hh--cCCeEEEEecCCCCHHHHHHH
Confidence 45667765 8999999999999994 9999999877665543321 00 0123333333 34566777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.+||+..+
T Consensus 77 ~~~~-~~~~--~~id~vi~~ag 95 (254)
T PRK08085 77 IEHI-EKDI--GPIDVLINNAG 95 (254)
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7666 4433 33346776654
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.32 Score=44.46 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...+|.|||+|.+|+.++.+|...|. .+++++|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV---g~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV---GKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC---CEEEEECCC
Confidence 45789999999999999999999996 688888865
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.6 Score=47.11 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=30.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..++|.|||+|..|...|..|.+.|+ +|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~----~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV----QVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC----eEEEEecCC
Confidence 45789999999999999999999885 899998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.2 Score=40.73 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=50.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.++.+ ..+.++.+ .+..+.++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGA----RVAIVDIDADNGAAVAASLG------------ERARFIATDITDDAAIERA 70 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhC------------CeeEEEEecCCCHHHHHHH
Confidence 46667775 9999999999999994 99999999876665544221 12323322 34556666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.++|++.+
T Consensus 71 ~~~~-~~~~--g~id~lv~~ag 89 (261)
T PRK08265 71 VATV-VARF--GRVDILVNLAC 89 (261)
T ss_pred HHHH-HHHh--CCCCEEEECCC
Confidence 6665 4433 22246666543
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.62 Score=41.40 Aligned_cols=84 Identities=8% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC--c-cc--cC----hHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD--F-AL--ND----NHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g--~-~~--~s----~~e~~~~aDvIilaV~ 133 (341)
.+++.|||-+ ..|..++.-|.+.|. .|++++.+--.. +..... - .+ .+ ..+.+++||+||.|+.
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~A----tVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGA----RVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCC----EEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence 5789999985 569999998888874 999997542111 000000 0 11 12 5678899999999996
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
...+. +. ...+ ++|.+||++
T Consensus 136 ~~~~~--i~---~d~i--k~GavVIDV 155 (197)
T cd01079 136 SPNYK--VP---TELL--KDGAICINF 155 (197)
T ss_pred CCCCc--cC---HHHc--CCCcEEEEc
Confidence 43321 11 2235 789999987
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.1 Score=40.77 Aligned_cols=84 Identities=11% Similarity=0.142 Sum_probs=51.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++.+.+.+++ .+.....++.++.+ .+..+..+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~----~vv~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGA----AVALADLDAALAERAAAAI-------ARDVAGARVLAVPADVTDAASVAAA 76 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HhccCCceEEEEEccCCCHHHHHHH
Confidence 45666665 8999999999999994 8999999887766554321 00001223333333 24567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 77 ~~~~-~~~~--g~id~li~~ag 95 (260)
T PRK07063 77 VAAA-EEAF--GPLDVLVNNAG 95 (260)
T ss_pred HHHH-HHHh--CCCcEEEECCC
Confidence 7766 4433 23346776644
|
|
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.53 Score=50.19 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=62.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh----hh---hhhcCcCCCc--cccChHHHhhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE----RF---KLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~----e~---~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.||.|.|+|.-|.++++.|...|. +..+|+++|+.- .+ +...+.++.- ...++.|+++.+|++|=...+.
T Consensus 186 ~~iv~~GaGaag~~~a~~l~~~G~-~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~~g 264 (752)
T PRK07232 186 VKIVVSGAGAAAIACLNLLVALGA-KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSAAG 264 (752)
T ss_pred cEEEEECccHHHHHHHHHHHHcCC-CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCCCC
Confidence 689999999999999999999984 345888888641 11 1211111111 2347899999999888333343
Q ss_pred -HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 136 -YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 136 -~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
.-+++++.+ .++.+|..+++..+
T Consensus 265 ~~~~~~v~~M-------~~~piifalsNP~~ 288 (752)
T PRK07232 265 VLTPEMVKSM-------ADNPIIFALANPDP 288 (752)
T ss_pred CCCHHHHHHh-------ccCCEEEecCCCCc
Confidence 345667666 45678888888765
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.3 Score=41.19 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLH 106 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~ 106 (341)
+-|||+||+|.||+.|+..... .|. +-+.+.+|+...+.+
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm---~vvaisd~~~~~ak~ 57 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGM---EVVAISDRNLDAAKR 57 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCc---eEEEEecccchHHHH
Confidence 3589999999999999888763 343 334578888766554
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.72 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred eEEEEcccHHHHHHHHHHHhcC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTG 87 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G 87 (341)
||||+|+|++|..+.+.|.+.+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~ 22 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG 22 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 6999999999999999988753
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.9 Score=38.99 Aligned_cols=83 Identities=8% Similarity=0.088 Sum_probs=52.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.++|.|.|+ |.+|.++++.|.+.|. +|++..|++++++.+.+++ .. ....+.++.+ .+..+.+
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~----~Vi~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~D~~~~~~~~~ 75 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA----KVVLASRRVERLKELRAEI-------EA--EGGAAHVVSLDVTDYQSIKA 75 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEecCCCHHHHHH
Confidence 467888876 9999999999999984 8999999988776554321 00 0112333322 3455666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ .... .+=.+||++.+
T Consensus 76 ~~~~~-~~~~--~~~d~li~~ag 95 (258)
T PRK06949 76 AVAHA-ETEA--GTIDILVNNSG 95 (258)
T ss_pred HHHHH-HHhc--CCCCEEEECCC
Confidence 66665 4433 33346776654
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.99 Score=40.63 Aligned_cols=41 Identities=20% Similarity=0.091 Sum_probs=31.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhc
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHW 107 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l 107 (341)
|+++|.|.|+ |.+|..+++.|++.|. +|.+. .|++++.+.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~----~v~~~~~~~~~~~~~~ 43 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGW----SVGINYARDAAAAEET 43 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCC----EEEEEeCCCHHHHHHH
Confidence 6678888876 8899999999999984 77654 5666655443
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.88 Score=41.29 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+.++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~D~~~~~~~~~~ 76 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGA----QVAIAARHLDALEKLADEI-------GT--SGGKVVPVCCDVSQHQQVTSM 76 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHH-------Hh--cCCeEEEEEccCCCHHHHHHH
Confidence 45667776 8999999999999994 8999999987766554321 00 0122333322 35566777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++.+
T Consensus 77 ~~~~-~~~~--g~id~lv~~ag 95 (253)
T PRK05867 77 LDQV-TAEL--GGIDIAVCNAG 95 (253)
T ss_pred HHHH-HHHh--CCCCEEEECCC
Confidence 7665 4433 33346666643
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.5 Score=42.07 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=53.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
++|.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+++ .+ ..+++.++.+ .+..++.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~----~Vvl~~R~~~~l~~~~~~l-------~~--~g~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGA----KVVLLARGEEGLEALAAEI-------RA--AGGEALAVVADVADAEAVQAA 75 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HH--cCCcEEEEEecCCCHHHHHHH
Confidence 45777776 9999999999999994 8999999987766544321 10 1234444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+..+
T Consensus 76 ~~~~-~~~~--g~iD~lInnAg 94 (334)
T PRK07109 76 ADRA-EEEL--GPIDTWVNNAM 94 (334)
T ss_pred HHHH-HHHC--CCCCEEEECCC
Confidence 7766 4444 33346776643
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.12 E-value=1 Score=43.05 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=49.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-ccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.++.|+|+|.+|...++.....|. +|++.++++++.+.+++ +|+ . ........+..|+++.++. +..+...+
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~----~vi~~~~~~~~~~~a~~-~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~~~ 241 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGA----TVHVMTRGAAARRLALA-LGAASAGGAYDTPPEPLDAAILFAPAGGLVPPAL 241 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCC----eEEEEeCChHHHHHHHH-hCCceeccccccCcccceEEEECCCcHHHHHHHH
Confidence 579999999999888776667773 78888999888876665 787 2 2211111234687777664 33444444
Q ss_pred HHh
Q psy316 142 QGL 144 (341)
Q Consensus 142 ~~i 144 (341)
+-+
T Consensus 242 ~~l 244 (329)
T TIGR02822 242 EAL 244 (329)
T ss_pred Hhh
Confidence 433
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.7 Score=39.03 Aligned_cols=42 Identities=7% Similarity=0.034 Sum_probs=33.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
.+++.|.|+ |.+|.++++.|.+.|. +|++.+|+++.++.+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~----~v~~~~r~~~~~~~~~~ 48 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA----RVAITGRDPASLEAARA 48 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC----EEEEecCCHHHHHHHHH
Confidence 357888876 9999999999999984 89999998776654433
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.39 Score=43.83 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=45.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-CCc--c---ccC----hHHHh-hcCCEEEEe
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-MDF--A---LND----NHRII-KEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-~g~--~---~~s----~~e~~-~~aDvIila 131 (341)
+|+|.|+|+ |.+|..+++.|++.| ++|++..|++++...+..+ .++ . ..+ ..+.+ ...|+||.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g----~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG----FAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC----CEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 368999995 999999999999988 4899999988776543321 122 1 112 12334 468888877
Q ss_pred eC
Q psy316 132 MK 133 (341)
Q Consensus 132 V~ 133 (341)
..
T Consensus 93 ~g 94 (251)
T PLN00141 93 TG 94 (251)
T ss_pred CC
Confidence 54
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=2.1 Score=39.08 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=53.6
Q ss_pred CCCCC-CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---Ch
Q psy316 60 HVPMW-TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KP 134 (341)
Q Consensus 60 ~~~m~-~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~ 134 (341)
.++|. +++-|.|+ |.+|.++++.|++.|+ +|++.+|++++++.+.+++ .. ..+++.++.+ .+
T Consensus 5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~----~vv~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~ 71 (265)
T PRK07097 5 LFSLKGKIALITGASYGIGFAIAKAYAKAGA----TIVFNDINQELVDKGLAAY-------RE--LGIEAHGYVCDVTDE 71 (265)
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHH-------Hh--cCCceEEEEcCCCCH
Confidence 34554 44666665 8999999999999984 8999999887665543311 00 1234444443 34
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+.+++.++ ...+ .+=..+|++++
T Consensus 72 ~~~~~~~~~~-~~~~--~~id~li~~ag 96 (265)
T PRK07097 72 DGVQAMVSQI-EKEV--GVIDILVNNAG 96 (265)
T ss_pred HHHHHHHHHH-HHhC--CCCCEEEECCC
Confidence 5677777766 5444 33246676644
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.5 Score=40.59 Aligned_cols=82 Identities=9% Similarity=0.014 Sum_probs=51.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.| .|.+|.++++.|.+.|. +|++.+|+++.++.+.+++ . ....++.++.+ .+..+..+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~----~Vv~~~r~~~~l~~~~~~l-------~--~~~~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA----RVVLGDVDKPGLRQAVNHL-------R--AEGFDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------H--hcCCeEEEEeCCCCCHHHHHHH
Confidence 3455555 58999999999999994 8999999887665443210 0 01223444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.++|+.++
T Consensus 74 ~~~~-~~~~--g~id~li~nAg 92 (275)
T PRK05876 74 ADEA-FRLL--GHVDVVFSNAG 92 (275)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7776 4444 33347777643
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.3 Score=37.19 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=53.8
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCC--hhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 66 KVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPS--ERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 66 kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~--~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+.|+| .|.+|.++++.|++.|. ..|+++.|+ .++.+.+.++ .. -....+.++.. .+..++.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~---~~v~~~~r~~~~~~~~~l~~~-------l~--~~~~~~~~~~~D~~~~~~~~~ 69 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGA---RVVILTSRSEDSEGAQELIQE-------LK--APGAKITFIECDLSDPESIRA 69 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTT---EEEEEEESSCHHHHHHHHHHH-------HH--HTTSEEEEEESETTSHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCc---eEEEEeeeccccccccccccc-------cc--ccccccccccccccccccccc
Confidence 466776 59999999999999963 588899998 4555444321 11 11233444442 4567888
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+++++ .... .+=.++|.+.+...
T Consensus 70 ~~~~~-~~~~--~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 70 LIEEV-IKRF--GPLDILINNAGIFS 92 (167)
T ss_dssp HHHHH-HHHH--SSESEEEEECSCTT
T ss_pred ccccc-cccc--cccccccccccccc
Confidence 88887 5333 33357887755543
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.8 Score=39.25 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=31.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
+++.|.|+ |.+|..+++.|++.|. +|++.+|++++.+.+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~----~v~~~~~~~~~~~~~ 50 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGW----QVVLADLDRERGSKV 50 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCC----EEEEEcCCHHHHHHH
Confidence 56777775 9999999999999984 899999887655443
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.5 Score=38.80 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=50.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.+++.|+|+ |.+|..+++.|++.|+ +|++.+|++++.....++.. .....++..-+. +..+..++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~ 73 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA----RVALIGRGAAPLSQTLPGVP---------ADALRIGGIDLVDPQAARRAV 73 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC----eEEEEeCChHhHHHHHHHHh---------hcCceEEEeecCCHHHHHHHH
Confidence 367888876 9999999999999984 89999998766443222100 011223322232 45566666
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++ ...+ .+-.+|++..+
T Consensus 74 ~~~-~~~~--~~~d~vi~~ag 91 (239)
T PRK12828 74 DEV-NRQF--GRLDALVNIAG 91 (239)
T ss_pred HHH-HHHh--CCcCEEEECCc
Confidence 665 4433 33346666543
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.27 Score=49.36 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=31.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
.|.++++|||+|.-|.+-|+.|++.|+ +++++.|+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~----~v~vfEr~~ 39 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGH----EVVVFERTD 39 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCC----CceEEEecC
Confidence 468899999999999999999999995 777777654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.6 Score=39.54 Aligned_cols=80 Identities=9% Similarity=0.131 Sum_probs=51.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+++.|.|+ |.+|..+++.|++.|. +|++.+|+.++.+.+.++.+ ..+.++.+ .+..+..
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~----~v~~~~r~~~~~~~~~~~~~------------~~~~~~~~D~~~~~~~~~ 69 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA----RVVIADIKPARARLAALEIG------------PAAIAVSLDVTRQDSIDR 69 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC----EEEEEcCCHHHHHHHHHHhC------------CceEEEEccCCCHHHHHH
Confidence 356778875 9999999999999994 89999999887665543211 11222222 3456666
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++.+ ...+ .+=.++|++++
T Consensus 70 ~~~~~-~~~~--~~id~li~~ag 89 (257)
T PRK07067 70 IVAAA-VERF--GGIDILFNNAA 89 (257)
T ss_pred HHHHH-HHHc--CCCCEEEECCC
Confidence 66665 4433 33346676644
|
|
| >KOG3007|consensus | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.31 Score=45.26 Aligned_cols=93 Identities=8% Similarity=0.019 Sum_probs=64.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----C---C--c-cccChHHHhhcCCEEEEeeChH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----M---D--F-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~---g--~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
-..++|.|..+-.......+.-- .-.+|.+|+|+++.++.+++. + . + ...+.++++..+|||+-|++..
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~~p-slreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlst 218 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKLIP-SLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLST 218 (333)
T ss_pred EEEEEcccchhHHHHHHHHHhcc-cceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccC
Confidence 36788999999888877665421 135899999999887766542 2 1 2 4567788899999999998754
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
. .++. ...+ +++ ..|++.++.++.
T Consensus 219 e--Pilf---gewl--kpg-thIdlVGsf~p~ 242 (333)
T KOG3007|consen 219 E--PILF---GEWL--KPG-THIDLVGSFKPV 242 (333)
T ss_pred C--ceee---eeee--cCC-ceEeeeccCCch
Confidence 2 2221 2345 566 667888887764
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=90.95 E-value=5.2 Score=38.35 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=28.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD 112 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g 112 (341)
.+++||+|+|-+|+.=.+.-..-| .+|++++++..+.+.+.+.+|
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAMG----~rV~vis~~~~kkeea~~~LG 226 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAMG----MRVTVISTSSKKKEEAIKSLG 226 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHhC----cEEEEEeCCchhHHHHHHhcC
Confidence 378999988766653333223346 499999998755554444355
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.88 E-value=1.9 Score=39.05 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=51.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+..+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~~ 73 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGA----KVVVGARRQAELDQLVAEI-------RA--EGGEAVALAGDVRDEAYAKAL 73 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEcCCCCHHHHHHH
Confidence 46777775 8999999999999994 8999999987766554321 00 0123444433 35566667
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 74 ~~~~-~~~~--~~id~li~~ag 92 (254)
T PRK07478 74 VALA-VERF--GGLDIAFNNAG 92 (254)
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7666 4433 22235666543
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.3 Score=41.69 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=50.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
++|.|.|+ |-+|.++++.|++.|. +|++..|++++.+...++ ..+.....++.++.+ ....++.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~----~vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGA----HVVLAVRNLDKGKAAAAR-------ITAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHH-------HHHhCCCCceEEEECCCCCHHHHHHH
Confidence 56777765 9999999999999984 899999988765543221 011011233444333 24556666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 86 ~~~~-~~~~--~~iD~li~nAg 104 (306)
T PRK06197 86 ADAL-RAAY--PRIDLLINNAG 104 (306)
T ss_pred HHHH-HhhC--CCCCEEEECCc
Confidence 6666 4433 22246666643
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.1 Score=42.90 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=47.8
Q ss_pred CeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeCh----HH
Q psy316 65 TKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKP----QY 136 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~----~~ 136 (341)
.++.|+|+|.+|...++.+.+ .|. .+|+++++++++++.+++ .+. ... .+... ..|+||=++-. ..
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~---~~vi~~~~~~~k~~~a~~-~~~~~~~--~~~~~~~g~d~viD~~G~~~~~~~ 238 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPE---SKLVVFGKHQEKLDLFSF-ADETYLI--DDIPEDLAVDHAFECVGGRGSQSA 238 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCC---CcEEEEeCcHhHHHHHhh-cCceeeh--hhhhhccCCcEEEECCCCCccHHH
Confidence 579999999999987776654 342 378999999988877654 444 211 11112 37899988852 34
Q ss_pred HHHHHHHh
Q psy316 137 LDSAIQGL 144 (341)
Q Consensus 137 v~~vl~~i 144 (341)
+.+.++-+
T Consensus 239 ~~~~~~~l 246 (341)
T cd08237 239 INQIIDYI 246 (341)
T ss_pred HHHHHHhC
Confidence 44444433
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=2.1 Score=40.12 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=53.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|..+++.|.+.|. +|++.+|++++++.+.++++ ...+++.+.+ .+..+.++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~l~~~~~~l~----------~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGA----KLALVDLEEAELAALAAELG----------GDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhc----------CCCcEEEEEecCCCHHHHHHH
Confidence 46777775 8999999999999994 89999999887776554321 0123333222 35567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 76 ~~~~-~~~~--g~id~vI~nAG 94 (296)
T PRK05872 76 AEEA-VERF--GGIDVVVANAG 94 (296)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7776 5444 33246776644
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.9 Score=39.07 Aligned_cols=82 Identities=12% Similarity=0.223 Sum_probs=52.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|.+.|. +|++.+|++++++.+.++. .+ ...++.++.+ .+..+..+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~----~Vi~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~~ 68 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA----NVVITGRTKEKLEEAKLEI-------EQ--FPGQVLTVQMDVRNPEDVQKM 68 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEecCCCHHHHHHH
Confidence 46777766 7899999999999984 8999999987665543311 00 0123444433 45667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++ ...+ .+=.++|++.+
T Consensus 69 ~~~~-~~~~--~~id~lI~~ag 87 (252)
T PRK07677 69 VEQI-DEKF--GRIDALINNAA 87 (252)
T ss_pred HHHH-HHHh--CCccEEEECCC
Confidence 7666 4433 23246777654
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.52 Score=50.93 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=45.1
Q ss_pred eEEEEcccHHHHHH-HHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-c-ccChHHHhhcCCEEEEe
Q psy316 66 KVGFIGAGNMAQAV-ATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-A-LNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 66 kIgiIG~G~mG~ai-a~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~-~~s~~e~~~~aDvIila 131 (341)
+|.|||+|..|.+. |+.|.+.|+ +|+++|.++. ..+.|.+ .|+ . .....+.+..+|+||.+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~----~V~~sD~~~~~~~~~L~~-~gi~~~~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGY----SVSGSDLSEGKTVEKLKA-KGARFFLGHQEEHVPEDAVVVYS 70 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCC----eEEEECCCCChHHHHHHH-CCCEEeCCCCHHHcCCCCEEEEC
Confidence 59999999999997 999999994 9999997542 3344544 476 2 23344566789999876
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=1 Score=45.42 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.+++.|||.|.+|..=++.|++.|. +|+++.+.- ..+..+.++..+ . -.-..+.++.+++||.|+.+..+..
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga----~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~ 87 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGA----RLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQ 87 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhH
Confidence 4789999999999998999999984 899886532 233344332122 1 1112355789999999998766554
Q ss_pred HH
Q psy316 140 AI 141 (341)
Q Consensus 140 vl 141 (341)
-+
T Consensus 88 ~i 89 (457)
T PRK10637 88 RV 89 (457)
T ss_pred HH
Confidence 44
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.6 Score=41.13 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=49.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl~~ 143 (341)
.++.|+|+|.+|...++.+...|. ..|.++++++++++...+ +.+ .+...+.-...|+||-|+-. ..+...++-
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~---~~v~~~~~~~~rl~~a~~-~~~-i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~ 220 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGG---SPPAVWETNPRRRDGATG-YEV-LDPEKDPRRDYRAIYDASGDPSLIDTLVRR 220 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC---ceEEEeCCCHHHHHhhhh-ccc-cChhhccCCCCCEEEECCCCHHHHHHHHHh
Confidence 479999999999988877766774 457778888877765433 332 11111112358999999975 456666655
Q ss_pred h
Q psy316 144 L 144 (341)
Q Consensus 144 i 144 (341)
+
T Consensus 221 l 221 (308)
T TIGR01202 221 L 221 (308)
T ss_pred h
Confidence 5
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.43 Score=44.01 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=42.7
Q ss_pred EEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEee
Q psy316 68 GFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 68 giIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV 132 (341)
.|.| +|.+|+.+++.|++.| ++|++.+|++.....+.. .++ ......+.+..+|+||-+.
T Consensus 2 lVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~Vvh~a 65 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDG----HEVTILTRSPPAGANTKW-EGYKPWAPLAESEALEGADAVINLA 65 (292)
T ss_pred EEEcccchhhHHHHHHHHHcC----CEEEEEeCCCCCCCcccc-eeeecccccchhhhcCCCCEEEECC
Confidence 4666 5999999999999988 499999998776544332 122 1123345567899999776
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=90.65 E-value=1.4 Score=41.73 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=52.2
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 62 PMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 62 ~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+|++++.|.|+ +.+|.++++.|++.|. ++|++..|+.++.+.+.++++. ....+.++.+ .+..+
T Consensus 1 ~~~k~vlITGas~GIG~aia~~L~~~G~---~~V~l~~r~~~~~~~~~~~l~~---------~~~~~~~~~~Dl~~~~~v 68 (314)
T TIGR01289 1 QQKPTVIITGASSGLGLYAAKALAATGE---WHVIMACRDFLKAEQAAKSLGM---------PKDSYTIMHLDLGSLDSV 68 (314)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhcC---------CCCeEEEEEcCCCCHHHH
Confidence 46677777777 7899999999999881 3899999998776655432110 1122333332 34567
Q ss_pred HHHHHHhhhcccccCCCcEEEEec
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+.++.++ .... .+=.++|..+
T Consensus 69 ~~~~~~~-~~~~--~~iD~lI~nA 89 (314)
T TIGR01289 69 RQFVQQF-RESG--RPLDALVCNA 89 (314)
T ss_pred HHHHHHH-HHhC--CCCCEEEECC
Confidence 7777666 4333 2223566553
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.35 Score=47.44 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=30.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
|+|.|||+|-+|.+.|..|.+.|. +|+++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~----~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGH----EVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC----EEEEEeCCC
Confidence 579999999999999999999984 899999864
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.7 Score=38.93 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=51.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|+|+ |.+|..+++.|.+.|. +|++.+|++++.+.+.++. .+ ...++.++.+ .+..+.++
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~----~vi~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~~ 72 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGA----KLALIDLNQEKLEEAVAEC-------GA--LGTEVRGYAANVTDEEDVEAT 72 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCceEEEEcCCCCHHHHHHH
Confidence 57888887 9999999999999984 8999999887655433210 00 0223333333 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+ ...+ .+=..||+..+
T Consensus 73 ~~~~-~~~~--~~id~vi~~ag 91 (253)
T PRK08217 73 FAQI-AEDF--GQLNGLINNAG 91 (253)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6665 4333 22236676543
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.35 Score=47.29 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=30.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhc--CCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRT--GLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~--G~~~~~~V~v~~r~~ 101 (341)
|+..|.|||+|-+|.++|..|.+. | .+|+++++.+
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g----~~V~llE~~~ 37 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPG----ARIAVLEKES 37 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCC----CeEEEEeCCC
Confidence 456799999999999999999988 7 4999999864
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.46 Score=47.54 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=43.5
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hh----hhcCcCCCc-c-ccC-hH-----HHhhcCCEEEEee
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FK----LHWPEPMDF-A-LND-NH-----RIIKEAEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~----~~l~~~~g~-~-~~s-~~-----e~~~~aDvIilaV 132 (341)
||.|||+|..|.+.|+.|.+.|+ +|.++|+++. .. +.+.+ .|+ . ... .. +...+.|+||.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~----~V~~~D~~~~~~~~~~~~~l~~-~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW----EVVVSDRNDSPELLERQQELEQ-EGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC----EEEEECCCCchhhHHHHHHHHH-cCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 69999999999999999999994 9999997543 11 23444 465 2 111 11 2466799988854
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.65 Score=46.38 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=45.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh--hhhcCcC-CCc-c-ccC-hHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF--KLHWPEP-MDF-A-LND-NHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~--~~~l~~~-~g~-~-~~s-~~e~~~~aDvIilaV 132 (341)
.++|.|+|.|..|.+.++.|.+.|. +|+++|.++.. .+++.+. .|+ . ... ..+...++|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~----~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~sp 75 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGA----EVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSP 75 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECC
Confidence 4689999999999999999999994 89999875432 3344331 255 2 122 233456899999875
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.1 Score=40.27 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=33.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
.+++.|.|+ |-+|..+++.|++.|. +|++.+|+++..+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~----~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA----SVVVADINAEGAERV 46 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHH
Confidence 467888887 9999999999999984 899999987665443
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.73 Score=43.30 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||-+ ..|..++..|...|. .|+++.++. .+..+.+++||+||.+++-..+ +.
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~a----tVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~l---v~ 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADA----TVTICHSKT--------------ENLKAELRQADILVSAAGKAGF---IT 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCC----eeEEEecCh--------------hHHHHHHhhCCEEEECCCcccc---cC
Confidence 4688888888 888888888877763 788776542 1456778899999999962222 21
Q ss_pred HhhhcccccCCCcEEEEec
Q psy316 143 GLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~ 161 (341)
...+ +++.+||++.
T Consensus 211 ---~~~v--k~GavVIDVg 224 (279)
T PRK14178 211 ---PDMV--KPGATVIDVG 224 (279)
T ss_pred ---HHHc--CCCcEEEEee
Confidence 2235 7889999873
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.2 Score=40.63 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=51.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++.+.+.+++ .. ....+.++.+ .+..+..+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~----~Vi~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~D~~~~~~~~~~ 77 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGA----DVLIAARTESQLDEVAEQI-------RA--AGRRAHVVAADLAHPEATAGL 77 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHHHH
Confidence 56777766 6899999999999984 9999999987766543321 00 0122322222 35566677
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 78 ~~~~-~~~~--~~id~vi~~Ag 96 (263)
T PRK07814 78 AGQA-VEAF--GRLDIVVNNVG 96 (263)
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7666 4433 33347777654
|
|
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.9 Score=42.65 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=65.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh---hhhhhc-CcCCCc--cc-cC---h-HHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE---RFKLHW-PEPMDF--AL-ND---N-HRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~---e~~~~l-~~~~g~--~~-~s---~-~e~~~~aDvIilaV~ 133 (341)
.||.+.|+|.-|-++++.|.+.|. ++.+|+++||.- +..+.+ -.++.. .. .. . .+++..+|++|=+..
T Consensus 200 ~kiv~~GAGAAgiaia~~l~~~g~-~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~ 278 (432)
T COG0281 200 QKIVINGAGAAGIAIADLLVAAGV-KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSG 278 (432)
T ss_pred eEEEEeCCcHHHHHHHHHHHHhCC-CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccccccccCCCEEEEcCC
Confidence 689999999999999999999994 667999999852 111111 010111 00 00 0 346778998886554
Q ss_pred hHHH-HHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 134 PQYL-DSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 134 ~~~v-~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
+..+ +++++++ .++.+|..+++..+ ++.+.++-+
T Consensus 279 ~G~~t~e~V~~M-------a~~PiIfalaNP~pEi~Pe~a~~~~~ 316 (432)
T COG0281 279 VGAFTEEMVKEM-------AKHPIIFALANPTPEITPEDAKEWGD 316 (432)
T ss_pred CCCcCHHHHHHh-------ccCCEEeecCCCCccCCHHHHhhcCC
Confidence 4443 4566666 45678888888764 455555543
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.85 Score=44.96 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=27.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEc
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA 98 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~ 98 (341)
|.+||+|.|+|++|..+.+.|.+..+ +..+|...|
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~-~~~evvaIN 93 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKD-SPLDVVAIN 93 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCC-CCeEEEEEc
Confidence 77899999999999999999887642 334666443
|
|
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.7 Score=35.19 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++|+++|+ .+-+..+++.|.++|+ +|+=.|..-.- +.+ +|. ...|+.++-..-|+|-+-.++..+.
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY----~ViPVNP~~~~-~ei---LG~k~y~sL~dIpe~IDiVdvFR~~e~~~ 87 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGY----RVIPVNPKLAG-EEI---LGEKVYPSLADIPEPIDIVDVFRRSEAAP 87 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCC----EEEeeCcccch-HHh---cCchhhhcHHhCCCCCcEEEEecChhhhH
Confidence 478999999 6778889999999994 88877763221 222 465 6778888888999999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+++++. + ..+.-++.+.-|+.-++.++.+.
T Consensus 88 ~i~~ea----l--~~~~kv~W~QlGi~n~ea~~~~~ 117 (140)
T COG1832 88 EVAREA----L--EKGAKVVWLQLGIRNEEAAEKAR 117 (140)
T ss_pred HHHHHH----H--hhCCCeEEEecCcCCHHHHHHHH
Confidence 999876 2 23345667777777665555443
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.88 Score=42.80 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=52.1
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.+++.|||-+ ..|..++..|.+.|. .|+++.... .+..+.+++||+||.|+. |..+.
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~A----tVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i~--- 215 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNANA----TVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNLIT--- 215 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCC----EEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccccC---
Confidence 4789999998 889999999988874 888875321 145677899999999995 44321
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 216 ----~~~v--k~gavvIDv 228 (281)
T PRK14183 216 ----EDMV--KEGAIVIDI 228 (281)
T ss_pred ----HHHc--CCCcEEEEe
Confidence 2245 788899886
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.36 Score=46.66 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|+|.|||+|.-|.+.|..|.+.|+ +|++++|++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~----~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH----EVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----cEEEEecCCc
Confidence 589999999999999999999995 8999998764
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=90.38 E-value=1.2 Score=47.78 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=66.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh----hh---hhhcCcCCCc--cccChHHHhhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE----RF---KLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~----e~---~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.||.|.|+|.-|.++++.|...|. +..+|+++|+.- .+ +...+..+.- ...++.|+++.+|++|=+..+.
T Consensus 194 ~~iv~~GaGaag~~~a~~l~~~G~-~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~~g 272 (763)
T PRK12862 194 VKLVASGAGAAALACLDLLVSLGV-KRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAAG 272 (763)
T ss_pred cEEEEEChhHHHHHHHHHHHHcCC-CcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCCCC
Confidence 689999999999999999999994 445899998531 11 1111111110 2247889999999988333344
Q ss_pred -HHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhc
Q psy316 136 -YLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKL 173 (341)
Q Consensus 136 -~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l 173 (341)
.-+++++.+ .++.+|..+++..+ .+...++.
T Consensus 273 ~~~~~~v~~M-------~~~piifalsNP~~E~~p~~a~~~~ 307 (763)
T PRK12862 273 VLKPEMVKKM-------APRPLIFALANPTPEILPEEARAVR 307 (763)
T ss_pred CCCHHHHHHh-------ccCCEEEeCCCCcccCCHHHHHHhc
Confidence 345677666 45678888888764 34444543
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.35 E-value=1.9 Score=39.65 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=33.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
+++.|.|+ |.+|.++++.|.+.|+ +|++.+|++++++.+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~----~V~~~~r~~~~l~~~~ 44 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGY----TVYGAARRVDKMEDLA 44 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHH
Confidence 56778876 9999999999999984 9999999987766543
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=1.5 Score=46.44 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..||+|||+|-+|+.++..|...|. .+++++|.+.
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GV---G~l~LvD~D~ 77 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGI---GRFHIADFDQ 77 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCC---CeEEEEcCCE
Confidence 4689999999999999999999996 6888888754
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.63 Score=46.99 Aligned_cols=64 Identities=9% Similarity=-0.032 Sum_probs=45.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh----hhhhcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER----FKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e----~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
.+||+|+|+|.=|.+.++.|.+.|. +|+++|.++. ..++|.+ .+. . .....+.+.++|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~----~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLP----AQALTLFCNAVEAREVGALAD-AALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCC----EEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHccCCCEEEECC
Confidence 4689999999999999999999995 8999995422 1123433 233 2 223345677899998774
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.81 Score=41.65 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=49.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c------ccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A------LNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~------~~s~~e~~~~aDvIilaV~ 133 (341)
|+|.|.|+ |.+|+.+++.|++.| ++|.+..|+++++..+. .++ . ..+....++..|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~----~~v~~~~r~~~~~~~~~--~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG----HEVRAAVRNPEAAAALA--GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC----CEEEEEEeCHHHHHhhc--CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 57889965 999999999999998 59999999999988877 243 1 1233455678898888887
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.38 Score=47.16 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=32.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|..+|.|||+|..|.+.|..|.+.|+ +|.++++.++
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~----~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGI----DNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCC----CEEEEECCCC
Confidence 56789999999999999999999995 8999998764
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.76 Score=46.03 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEc
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASA 98 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~ 98 (341)
..+||.|.|.||+|...++.|.+.|. +|+ ++|
T Consensus 227 ~g~rVaVQGfGNVG~~aA~~L~e~GA----kVVaVSD 259 (444)
T PRK14031 227 KGKVCLVSGSGNVAQYTAEKVLELGG----KVVTMSD 259 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEC
Confidence 35799999999999999999999995 665 466
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 341 | ||||
| 2izz_A | 322 | Crystal Structure Of Human Pyrroline-5-Carboxylate | 4e-31 | ||
| 2ger_A | 321 | Crystal Structure And Oxidative Mechanism Of Human | 4e-31 | ||
| 2gr9_A | 277 | Crystal Structure Of P5cr Complexed With Nadh Lengt | 5e-31 | ||
| 2amf_A | 259 | Crystal Structure Of 1-Pyrroline-5-Carboxylate Redu | 5e-22 | ||
| 2ahr_A | 259 | Crystal Structures Of 1-Pyrroline-5-Carboxylate Red | 2e-20 | ||
| 3gt0_A | 247 | Crystal Structure Of Pyrroline 5-Carboxylate Reduct | 4e-18 | ||
| 3tri_A | 280 | Structure Of A Pyrroline-5-Carboxylate Reductase (P | 7e-16 | ||
| 2rcy_A | 262 | Crystal Structure Of Plasmodium Falciparum Pyrrolin | 5e-15 | ||
| 1yqg_A | 263 | Crystal Structure Of A Pyrroline-5-Carboxylate Redu | 2e-08 |
| >pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate Reductase Length = 322 | Back alignment and structure |
|
| >pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human Pyrroline-5- Carboxylate Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh Length = 277 | Back alignment and structure |
|
| >pdb|2AMF|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259 | Back alignment and structure |
|
| >pdb|2AHR|A Chain A, Crystal Structures Of 1-Pyrroline-5-Carboxylate Reductase From Human Pathogen Streptococcus Pyogenes Length = 259 | Back alignment and structure |
|
| >pdb|3GT0|A Chain A, Crystal Structure Of Pyrroline 5-Carboxylate Reductase From Bacillus Cereus. Northeast Structural Genomics Consortium Target Bcr38b Length = 247 | Back alignment and structure |
|
| >pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc) From Coxiella Burnetii Length = 280 | Back alignment and structure |
|
| >pdb|2RCY|A Chain A, Crystal Structure Of Plasmodium Falciparum Pyrroline Carboxylate Reductase (Mal13p1.284) With Nadp Bound Length = 262 | Back alignment and structure |
|
| >pdb|1YQG|A Chain A, Crystal Structure Of A Pyrroline-5-Carboxylate Reductase From Neisseria Meningitides Mc58 Length = 263 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 1e-83
Identities = 84/312 (26%), Positives = 146/312 (46%), Gaps = 32/312 (10%)
Query: 36 ESEQHTGARPVRKSDMGMEDSVEHHVPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQII 95
H+ + ++ + VGFIGAG +A A+A G+ +I+
Sbjct: 3 HHHHHSSGVDLGTENLYFQS---------MSVGFIGAGQLAFALAKGFTAAGVLAAHKIM 53
Query: 96 ASAPS-ERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNS 153
AS+P + + M N ++ ++ +FLA+KP + + + +
Sbjct: 54 ASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEI---GADIED 110
Query: 154 SRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKE 213
++S GV + +++KKLS P P +IR M NT + +G T H E
Sbjct: 111 RHIVVSCAAGVTISSIEKKLSAFRPAPR----VIRCMTNTPVVVREGATVYATGTHAQVE 166
Query: 214 SEHLNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMA 273
+ +++ G + E ++++ ++GSG AY F +DA+ADG VK G+PR +A
Sbjct: 167 --DGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLA 224
Query: 274 LRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPF 333
+R+GAQ L G+ +++ ++ HP +KD + SPGG+TI +H LE G R+
Sbjct: 225 VRLGAQALLGAAKMLLH--------SEQHPGQLKDNVSSPGGATIHALHVLESGGFRSLL 276
Query: 334 SSA----ARRTK 341
+A RT+
Sbjct: 277 INAVEASCIRTR 288
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262 | Back alignment and structure |
|---|
Score = 248 bits (636), Expect = 6e-82
Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 29/272 (10%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALNDNHRIIKE 124
K+GF+G G M A+A + + + PS + L+ ++ N + +
Sbjct: 6 KLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLN-------YMSSNEELARH 58
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
+ + A+KP S + + ++ S+ +IS+ G+++ L++ + ++
Sbjct: 59 CDIIVCAVKPDIAGSVLNNI-KPYLS---SKLLISICGGLNIGKLEEMV------GSENK 108
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
I+ VMPNT G+G C + +++ I GI+ I E M+ AI
Sbjct: 109 -IVWVMPNTPCLVGEGSFIYCSNKNVNST--DKKYVNDIFNSCGIIHEIKEKDMDIATAI 165
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+G G AY++L ++++ D VK G+ R+++ + Q +KGS ++V K +
Sbjct: 166 SGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKK--------SDQPVQ 217
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
+KD I SPGG T G+++LEK + +A
Sbjct: 218 QLKDNIVSPGGITAVGLYSLEKNSFKYTVMNA 249
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 1e-81
Identities = 77/267 (28%), Positives = 133/267 (49%), Gaps = 21/267 (7%)
Query: 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRI 121
M ++GFIG GNM A+ +I + QII S + + E DN+ +
Sbjct: 1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEV 60
Query: 122 IKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPN 181
K A+ + L++KP S I + K + + I+++ G +E+ +
Sbjct: 61 AKNADILILSIKPDLYASIINEI---KEIIKNDAIIVTIAAGKSIESTENAF------NK 111
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF 241
++RVMPNT G+G++ +C + + ++ L + I G EI+ E +M+
Sbjct: 112 KVK-VVRVMPNTPALVGEGMSALCPNEMVTEK--DLEDVLNIFNSFGQTEIVSEKLMDVV 168
Query: 242 GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301
+++GS AY++++++AMAD AV G+PR+ A + AQ + GS ++V
Sbjct: 169 TSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMV--------LETGI 220
Query: 302 HPAVIKDQICSPGGSTIAGIHALEKAG 328
HP +KD +CSPGG+TI + LE+ G
Sbjct: 221 HPGELKDMVCSPGGTTIEAVATLEEKG 247
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 240 bits (616), Expect = 7e-79
Identities = 80/272 (29%), Positives = 126/272 (46%), Gaps = 29/272 (10%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALNDNHRIIKE 124
K+G IG G MA A+ L +T P ++I S S ER K + + +I +
Sbjct: 5 KIGIIGVGKMASAIIKGLKQT----PHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQ 60
Query: 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAP 184
+ V L +KPQ ++ ++ L + IISM G+ L+ L + D P
Sbjct: 61 VDLVILGIKPQLFETVLKPLHFKQP-------IISMAAGISLQRLATFV------GQDLP 107
Query: 185 TIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAI 244
++R+MPN + + T + + + +E + + G I E ++F A+
Sbjct: 108 -LLRIMPNMNAQILQSSTALTGNALVSQE--LQARVRDLTDSFGSTFDISEKDFDTFTAL 164
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
AGS AY++L ++A+A VK GIP+ AL I Q + S + + P
Sbjct: 165 AGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKT--------SSQSPH 216
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSA 336
D ICSPGG+TIAG+ LE+ G+ SSA
Sbjct: 217 DFIDAICSPGGTTIAGLMELERLGLTATVSSA 248
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280 | Back alignment and structure |
|---|
Score = 221 bits (567), Expect = 3e-71
Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 38/284 (13%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS--------ERFKLHWPEPMDFALN 116
+ + FIG GNMA+ + LI G P +I + S E+ +H
Sbjct: 4 SNITFIGGGNMARNIVVGLIANGY-DPNRICVTNRSLDKLDFFKEKCGVH-------TTQ 55
Query: 117 DNHRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRC-IISMLVGVDLETLKKKLSV 175
DN + A+ V LA+KP + + L K L+ ++ +IS+ VGV ++K L
Sbjct: 56 DNRQGALNADVVVLAVKPHQIKMVCEEL---KDILSETKILVISLAVGVTTPLIEKWL-- 110
Query: 176 LVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIP 234
+ I+R MPNT G TG+ + +DK+ N+A IM G+V +
Sbjct: 111 ----GKASR-IVRAMPNTPSSVRAGATGLFANETVDKD--QKNLAESIMRAVGLVIWVSS 163
Query: 235 ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLR 294
E + A++GSG AY+FL+M+A+ + A + G+ ++ A + Q + G+ ++ +
Sbjct: 164 EDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALE---- 219
Query: 295 MDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAAR 338
+ ++ + SPGG+T I LE +R F A
Sbjct: 220 ----TEQSVVQLRQFVTSPGGTTEQAIKVLESGNLRELFIKALT 259
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* Length = 263 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 5e-68
Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 27/274 (9%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
V F+G GNMA AVA L++ G +I + + + + + +
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQG---GYRIYIANRGAEKRERLEKELGVETSATLPELHSD 58
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ + LA+KPQ +++A + + + ++S+ G+ + TL + L
Sbjct: 59 DVLILAVKPQDMEAACKNIRT------NGALVLSVAAGLSVGTLSRYL------GGTRR- 105
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQ-GGIVEIIPESMMNSFGAI 244
I+RVMPNT K G G++GM + + + +A +IM+ G V + E M+ I
Sbjct: 106 IVRVMPNTPGKIGLGVSGMYAEAEVSET--DRRIADRIMKSVGLTVWLDDEEKMHGITGI 163
Query: 245 AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPA 304
+GSG AY+F ++DA+ + A++QG A + KG+ L
Sbjct: 164 SGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALA--------EQTGEDFE 215
Query: 305 VIKDQICSPGGSTIAGIHALEKAGVRTPFSSAAR 338
++ + S GG+T + A + V S
Sbjct: 216 KLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVC 249
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 5e-08
Identities = 37/248 (14%), Positives = 72/248 (29%), Gaps = 26/248 (10%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIA--SAPSERFKLHWPEPMDFALNDNHRII 122
T + IGAGN+A +A +L R G I Q+ + + D +
Sbjct: 11 TPIVLIGAGNLATNLAKALYRKGFRI-VQVYSRTEESARELAQKVEAE---YTTDLAEVN 66
Query: 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS-VLVPNPN 181
A+ +++K +QG+V ++ + + + + V P
Sbjct: 67 PYAKLYIVSLKDSAFAELLQGIVE---GKREEALMVHTAGSIPMNVWEGHVPHYGVFYPM 123
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSF 241
+ + + + V S
Sbjct: 124 QTFS----KQREVDFKEIPFFIEASSTEDAAFLKAIASTL-----SNRVYDADSEQRKSL 174
Query: 242 GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301
A C + + A+ K +P D+ L + + + +L K AQ
Sbjct: 175 HLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKT-------AQT 227
Query: 302 HPAVIKDQ 309
PA+ D+
Sbjct: 228 GPAIRYDE 235
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 9e-05
Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 20/221 (9%)
Query: 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK 123
V +GA G M + + + + A IA +R + M L D I
Sbjct: 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQ-----GMGIPLTDGDGWID 66
Query: 124 EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISM---LVGVDLETLKKKLSVLVPNP 180
EA+ V LA+ ++ + +V + ++ + + + ++ + +P
Sbjct: 67 EADVVVLALPDNIIEKVAEDIVP---RVRPGTIVLILDAAAPYAGVMPERADITYFIGHP 123
Query: 181 NDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKES--EHLNMAIKIMEQ-----GGIVEII 233
P A G V + EH + I E +
Sbjct: 124 CHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVT 183
Query: 234 PESMMN-SFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMA 273
E + G ++ ++ A+ + A + GI R A
Sbjct: 184 TEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAA 224
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 341 | |||
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 100.0 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 100.0 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 100.0 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 100.0 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 100.0 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 100.0 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.97 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.96 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.94 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.94 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.94 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.93 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.93 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.92 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.91 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.9 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.88 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.88 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.88 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.87 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.86 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.86 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.86 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.85 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.85 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.84 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.84 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.83 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.83 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.83 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.82 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.82 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.82 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.82 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.81 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.81 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.81 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.81 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.81 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.81 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.79 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.79 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.78 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.78 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.77 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.77 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.76 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.76 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.76 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.75 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.75 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.74 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.74 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.73 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.73 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.72 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.72 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.72 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.55 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.7 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.68 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.66 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.66 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.65 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.65 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.64 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.6 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.6 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.6 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.6 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.59 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.59 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.56 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.55 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.53 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.53 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.52 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.52 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.47 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.44 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.42 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.4 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.4 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.39 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.35 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.3 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.25 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.24 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.14 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 99.06 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.99 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.99 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.98 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.95 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.89 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.88 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.88 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.87 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.87 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.86 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 98.83 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.82 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.81 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.81 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.79 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.79 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.77 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.77 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.77 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.76 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.75 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.73 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.73 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.73 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.72 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.72 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.71 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.71 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.71 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.71 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.71 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.7 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.69 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.69 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.69 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.69 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.69 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.68 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.68 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.68 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.67 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.67 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.67 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.66 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.65 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.63 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.63 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.62 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.62 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.62 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.61 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.6 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.59 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.59 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.59 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.58 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.58 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.57 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.55 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.53 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.53 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.53 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.53 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.52 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.51 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.5 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.49 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.49 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.49 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.48 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.46 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.46 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.46 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.44 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.43 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.43 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.42 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.41 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.41 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.39 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.37 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.36 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.35 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.35 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.35 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.35 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.32 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.31 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.29 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.28 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.28 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.28 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.25 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.2 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.2 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.2 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.19 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.19 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.18 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.18 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.18 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.17 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.17 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.16 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.14 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.11 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.11 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.1 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.09 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.09 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.09 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.09 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.08 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.07 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.05 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.05 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.04 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.02 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.01 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.01 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.01 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 98.01 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.0 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.0 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.0 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.0 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.99 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.96 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.96 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.95 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.94 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.94 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.94 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.93 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.93 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.93 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.93 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.91 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.91 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.9 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.89 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.87 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.87 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.86 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.85 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.85 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.84 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.84 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.83 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.82 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.8 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.8 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.8 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.79 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.78 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.78 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.78 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.76 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.76 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.76 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.75 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.74 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.73 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.73 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.73 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.72 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.72 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.72 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.71 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.71 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.69 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.67 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.66 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.65 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.63 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.63 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.62 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.6 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.59 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.58 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.54 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.54 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.53 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.51 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.49 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.49 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.48 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.46 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.45 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.44 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.44 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.44 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.42 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.38 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.36 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.34 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.33 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.3 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.23 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.21 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.2 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.2 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.18 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.18 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.16 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.16 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.13 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.13 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.07 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.04 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.04 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.04 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.02 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.01 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.0 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.0 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.99 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.99 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.97 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.91 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.9 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.9 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.88 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.85 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.81 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 96.77 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.76 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.76 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 96.75 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.68 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.67 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.62 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.59 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.58 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.56 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.55 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.55 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.53 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.46 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.46 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 96.46 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 96.44 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 96.29 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.28 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.27 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.24 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.22 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.19 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.14 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.07 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.07 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.05 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.02 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.0 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.0 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.99 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.99 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.94 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.94 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.94 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.9 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 95.89 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.84 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.8 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.79 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.77 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.72 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 95.71 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.71 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.7 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.7 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.64 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 95.63 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.62 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 95.58 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.51 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 95.5 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.48 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.47 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.45 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 95.43 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.36 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.34 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.33 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.33 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 95.32 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 95.31 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.3 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.29 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 95.26 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.25 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 95.21 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.19 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.15 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.13 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 95.12 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.12 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 95.1 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.09 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 95.08 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.08 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 95.08 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.08 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.07 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.07 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.06 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 94.99 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.97 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.96 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.95 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.94 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.9 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 94.83 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 94.83 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 94.8 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.78 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 94.74 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 94.74 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.73 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 94.71 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 94.68 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 94.68 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 94.66 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 94.65 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 94.65 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 94.63 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 94.63 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.62 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 94.6 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 94.54 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 94.54 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 94.53 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 94.53 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 94.51 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 94.5 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 94.49 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 94.49 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 94.48 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 94.43 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 94.4 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 94.37 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 94.35 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 94.32 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 94.32 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 94.3 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 94.29 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 94.28 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 94.28 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.28 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 94.28 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 94.23 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 94.23 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.22 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.22 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 94.2 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.18 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 94.16 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 94.16 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 94.15 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 94.13 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 94.12 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 94.11 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 94.1 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 94.1 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 94.09 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 94.07 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 94.06 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 94.05 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 94.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 93.98 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 93.97 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 93.97 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 93.96 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 93.96 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.95 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.93 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 93.93 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 93.88 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 93.88 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 93.86 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 93.86 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 93.84 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 93.84 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 93.84 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 93.82 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 93.82 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 93.81 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 93.77 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 93.7 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 93.69 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.69 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.66 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 93.66 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 93.65 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 93.65 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 93.62 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 93.62 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 93.61 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.6 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 93.6 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 93.58 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 93.57 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.55 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 93.55 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 93.55 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 93.54 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.54 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 93.54 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.53 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 93.52 |
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=371.40 Aligned_cols=257 Identities=29% Similarity=0.455 Sum_probs=241.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
+|||+|||+|+||++|+++|.++|+ ++.+|++|+|++++++.+.+++|+ .+.++.++++++|+||+||||+.+.++++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~-~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p~~~~~vl~ 81 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGY-DPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCE 81 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTC-CGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCGGGHHHHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCC-CCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCHHHHHHHHH
Confidence 4789999999999999999999993 556899999999999999887788 77788999999999999999999999999
Q ss_pred Hhhhcc-cccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 143 GLVNDK-VTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 143 ~i~~~~-l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
++ .++ + +++++|||+++|++++.++++++ .+.+ ++|+|||+|..+++|++.+++++..++ ++.+.++
T Consensus 82 ~l-~~~~l--~~~~iiiS~~agi~~~~l~~~l~------~~~~-vvr~mPn~p~~v~~g~~~l~~~~~~~~--~~~~~v~ 149 (280)
T 3tri_A 82 EL-KDILS--ETKILVISLAVGVTTPLIEKWLG------KASR-IVRAMPNTPSSVRAGATGLFANETVDK--DQKNLAE 149 (280)
T ss_dssp HH-HHHHH--TTTCEEEECCTTCCHHHHHHHHT------CCSS-EEEEECCGGGGGTCEEEEEECCTTSCH--HHHHHHH
T ss_pred HH-Hhhcc--CCCeEEEEecCCCCHHHHHHHcC------CCCe-EEEEecCChHHhcCccEEEEeCCCCCH--HHHHHHH
Confidence 99 988 8 77889999999999999999998 4678 999999999999999999998887777 9999999
Q ss_pred HHHHhcCCeEEc-CCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q psy316 222 KIMEQGGIVEII-PESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQ 300 (341)
Q Consensus 222 ~ll~~lG~~~~v-~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~ 300 (341)
++|+.+|.++++ +|+.+|.+++++||+|+|++.++++|.+++++.|++++++++++.+++.|+++++.+ ++
T Consensus 150 ~l~~~iG~~~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~~~~~--------~~ 221 (280)
T 3tri_A 150 SIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTVLGAARMALE--------TE 221 (280)
T ss_dssp HHHGGGEEEEECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT--------CS
T ss_pred HHHHHCCCeEEECCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cC
Confidence 999999998888 788999999999999999999999999999999999999999999999999999988 89
Q ss_pred CChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 301 ~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
.+|.+|+++|+||||+|++||+.||++||+..+.+|+++|+
T Consensus 222 ~~p~~l~~~v~spgGtT~~~l~~le~~g~~~~~~~av~aa~ 262 (280)
T 3tri_A 222 QSVVQLRQFVTSPGGTTEQAIKVLESGNLRELFIKALTAAV 262 (280)
T ss_dssp SCHHHHHHHHCCTTSHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHhccCCChHHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999873
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-46 Score=340.28 Aligned_cols=246 Identities=31% Similarity=0.589 Sum_probs=200.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|+|||+|||+|+||.+|+++|.++|++++.+|++|+|++++++.+.+++|+ ...++.++++++|+||+||||+++.+++
T Consensus 1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~~~~v~ 80 (247)
T 3gt0_A 1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDLYASII 80 (247)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTTHHHHC
T ss_pred CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHHHHHHH
Confidence 568999999999999999999999965666999999999999988765688 7788899999999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAI 221 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~ 221 (341)
+++ .+++ +++++|||+++|++.+.+++.++ .+.+ ++|+|||+|...+.|.+.+++++..++ ++++.++
T Consensus 81 ~~l-~~~l--~~~~~vvs~~~gi~~~~l~~~~~------~~~~-~v~~~p~~p~~~~~g~~~~~~~~~~~~--~~~~~~~ 148 (247)
T 3gt0_A 81 NEI-KEII--KNDAIIVTIAAGKSIESTENAFN------KKVK-VVRVMPNTPALVGEGMSALCPNEMVTE--KDLEDVL 148 (247)
T ss_dssp ----CCSS--CTTCEEEECSCCSCHHHHHHHHC------SCCE-EEEEECCGGGGGTCEEEEEEECTTCCH--HHHHHHH
T ss_pred HHH-Hhhc--CCCCEEEEecCCCCHHHHHHHhC------CCCc-EEEEeCChHHHHcCceEEEEeCCCCCH--HHHHHHH
Confidence 999 8888 88999999999999999999887 4567 999999999999999999988776777 8999999
Q ss_pred HHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q psy316 222 KIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQA 301 (341)
Q Consensus 222 ~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~ 301 (341)
++|+.+|.+++++|+.+|.+++++||+|+|++.++++|.+++++.|++++++++++.+++.|+..++.+ ++.
T Consensus 149 ~l~~~~G~~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~--------~~~ 220 (247)
T 3gt0_A 149 NIFNSFGQTEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLE--------TGI 220 (247)
T ss_dssp HHHGGGEEEEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH--------SCC
T ss_pred HHHHhCCCEEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH--------cCC
Confidence 999999998888999999999999999999999999999999999999999999999999999999988 899
Q ss_pred ChHHHHHhcCCCchHHHHHHHHHHhCC
Q psy316 302 HPAVIKDQICSPGGSTIAGIHALEKAG 328 (341)
Q Consensus 302 ~p~~l~~~v~tpgG~t~~~l~~l~~~~ 328 (341)
+|.+|+++|+||||+|++||+.||++|
T Consensus 221 ~p~~l~~~v~spgG~t~~gl~~le~~~ 247 (247)
T 3gt0_A 221 HPGELKDMVCSPGGTTIEAVATLEEKG 247 (247)
T ss_dssp ---------------------------
T ss_pred CHHHHHHhcCCCCchHHHHHHHHHhCc
Confidence 999999999999999999999999865
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=307.60 Aligned_cols=259 Identities=31% Similarity=0.541 Sum_probs=232.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh--hhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER--FKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e--~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+|||+|||+|+||++|+.+|.++|..++++|++|+|+++ +++.+.+ +|+ ...++.+++.++|+||+||||+++.++
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~-~G~~~~~~~~e~~~~aDvVilav~~~~~~~v 100 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRK-MGVKLTPHNKETVQHSDVLFLAVKPHIIPFI 100 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHH-HTCEEESCHHHHHHHCSEEEECSCGGGHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHH-cCCEEeCChHHHhccCCEEEEEeCHHHHHHH
Confidence 468999999999999999999998444469999999986 7777765 588 667888899999999999999999999
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHH
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMA 220 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v 220 (341)
+.++ .+.+ +++++||++++|++.+.++++++... ...+ +++.||+.|..+++|.+++++++..++ +..+.+
T Consensus 101 l~~l-~~~l--~~~~ivvs~s~gi~~~~l~~~l~~~~---~~~~-vv~~~p~~p~~~~~g~~v~~~g~~~~~--~~~~~v 171 (322)
T 2izz_A 101 LDEI-GADI--EDRHIVVSCAAGVTISSIEKKLSAFR---PAPR-VIRCMTNTPVVVREGATVYATGTHAQV--EDGRLM 171 (322)
T ss_dssp HHHH-GGGC--CTTCEEEECCTTCCHHHHHHHHHTTS---SCCE-EEEEECCGGGGGTCEEEEEEECTTCCH--HHHHHH
T ss_pred HHHH-Hhhc--CCCCEEEEeCCCCCHHHHHHHHhhcC---CCCe-EEEEeCCcHHHHcCCeEEEEeCCCCCH--HHHHHH
Confidence 9999 8888 78999999999999988887775211 1357 899999999999999888888776666 889999
Q ss_pred HHHHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q psy316 221 IKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQ 300 (341)
Q Consensus 221 ~~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~ 300 (341)
+++|+.+|..++++++.++.+++++|++|+|++.+++++.+++++.|++++++++++.+++.|+.+++.+ .+
T Consensus 172 ~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~~~~~~g~~~~~~~--------~~ 243 (322)
T 2izz_A 172 EQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLH--------SE 243 (322)
T ss_dssp HHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH--------CS
T ss_pred HHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cC
Confidence 9999999998888999999999999999999999999999999999999999999999999999998876 67
Q ss_pred CChHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 301 AHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 301 ~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
.+|..|++.+++|||+|+++++.|++.+|+..+.+|+.++
T Consensus 244 ~~p~~l~~~v~sp~g~t~~~l~~l~~~g~~~~~~~av~~~ 283 (322)
T 2izz_A 244 QHPGQLKDNVSSPGGATIHALHVLESGGFRSLLINAVEAS 283 (322)
T ss_dssp SCHHHHHHHHCCTTSHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCHHHHHHhCCCCCcHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999875
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=283.30 Aligned_cols=250 Identities=31% Similarity=0.488 Sum_probs=225.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
+|||+|||+|+||.++++.|.+.| ++|.+|+|++++++.+.+++|+ ...++.++++++|+||+|+|++.+.+++.
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g----~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v~~ 78 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTP----HELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLK 78 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSS----CEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHT
T ss_pred ccEEEEECCCHHHHHHHHHHHhCC----CeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeCcHhHHHHHH
Confidence 369999999999999999999888 4899999999999888765677 67788888999999999999999888887
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .++++||++.+|++.+.+++.++ .+.+ +++.+|++|...++|.+.++++...++ +..+.+++
T Consensus 79 ~l-------~~~~~vv~~~~~~~~~~l~~~~~------~~~~-~v~~~p~~~~~~~~g~~~i~~~~~~~~--~~~~~~~~ 142 (259)
T 2ahr_A 79 PL-------HFKQPIISMAAGISLQRLATFVG------QDLP-LLRIMPNMNAQILQSSTALTGNALVSQ--ELQARVRD 142 (259)
T ss_dssp TS-------CCCSCEEECCTTCCHHHHHHHHC------TTSC-EEEEECCGGGGGTCEEEEEEECTTCCH--HHHHHHHH
T ss_pred Hh-------ccCCEEEEeCCCCCHHHHHHhcC------CCCC-EEEEcCCchHHHcCceEEEEcCCCCCH--HHHHHHHH
Confidence 66 46779999999999999988887 4457 899999999999999887877765566 88999999
Q ss_pred HHHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 223 IMEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 223 ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
+|+.+|..++++++.+|.+++++|++|+|++.+++++.+++++.|++++++++++.+++.|+.+++.+ .+.+
T Consensus 143 ll~~~G~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 214 (259)
T 2ahr_A 143 LTDSFGSTFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKT--------SSQS 214 (259)
T ss_dssp HHHTTEEEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH--------SSSC
T ss_pred HHHhCCCEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCC
Confidence 99999976778988999999999999999999999999999999999999999999999999998877 6778
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
|..|++.+++|||+|+.+++.|++.||+..+.+|+++++
T Consensus 215 p~~l~~~~~~p~~~~~~~~~~l~~~g~~~~~~~a~~~~~ 253 (259)
T 2ahr_A 215 PHDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDKTI 253 (259)
T ss_dssp HHHHHHHHCCTTSHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998863
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=277.67 Aligned_cols=248 Identities=27% Similarity=0.483 Sum_probs=222.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||+|||+|+||++|+++|.++|+.++++|++|+|++++ +|+ ...++.++++++|+||+|||++++.+++.+
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~ 77 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-------TTLNYMSSNEELARHCDIIVCAVKPDIAGSVLNN 77 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------SSSEECSCHHHHHHHCSEEEECSCTTTHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------CceEEeCCHHHHHhcCCEEEEEeCHHHHHHHHHH
Confidence 689999999999999999999984333589999998765 367 666788889999999999999999999999
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKI 223 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~l 223 (341)
+ .+.+ ++++||++++|++.+.++++++ .+.+ +++++|++|...+.|.+++++++..++ +..+.++++
T Consensus 78 l-~~~l---~~~~vv~~~~gi~~~~l~~~~~------~~~~-~v~~~p~~p~~~~~g~~~~~~~~~~~~--~~~~~~~~l 144 (262)
T 2rcy_A 78 I-KPYL---SSKLLISICGGLNIGKLEEMVG------SENK-IVWVMPNTPCLVGEGSFIYCSNKNVNS--TDKKYVNDI 144 (262)
T ss_dssp S-GGGC---TTCEEEECCSSCCHHHHHHHHC------TTSE-EEEEECCGGGGGTCEEEEEEECTTCCH--HHHHHHHHH
T ss_pred H-HHhc---CCCEEEEECCCCCHHHHHHHhC------CCCc-EEEECCChHHHHcCCeEEEEeCCCCCH--HHHHHHHHH
Confidence 9 8877 4678999999999999998887 3447 889999999999999777887765566 889999999
Q ss_pred HHhcCCeEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCh
Q psy316 224 MEQGGIVEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHP 303 (341)
Q Consensus 224 l~~lG~~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p 303 (341)
|+.+|..++++++.+|.++++++++|+|++.+++++.+++++.|++++.+++++.+++.++.++..+ ++.+|
T Consensus 145 l~~~G~~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 216 (262)
T 2rcy_A 145 FNSCGIIHEIKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIKGSVEMVKK--------SDQPV 216 (262)
T ss_dssp HHTSEEEEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH--------CSSCH
T ss_pred HHhCCCEEEeCHHHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCCH
Confidence 9999987778988999999999999999999999999999999999999999999999999988865 56789
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 304 AVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 304 ~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
..|.+.+++|+|+++.+|+.|++.+|+..+.+|++++
T Consensus 217 ~~l~d~~~~~~~t~~~~l~~l~~~~~~~~~~~a~~~~ 253 (262)
T 2rcy_A 217 QQLKDNIVSPGGITAVGLYSLEKNSFKYTVMNAVEAA 253 (262)
T ss_dssp HHHHHHHCCTTSHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=272.14 Aligned_cols=249 Identities=27% Similarity=0.433 Sum_probs=222.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||+|||+|+||++++.+|.++|. ++|++|+|++++++.+.+++|+ ...++.+++ ++|+||+|||++++.+++.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~---~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~~~ 76 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGG---YRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVKPQDMEAACKN 76 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS---CEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSCHHHHHHHHTT
T ss_pred CEEEEECchHHHHHHHHHHHHCCC---CeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeCchhHHHHHHH
Confidence 589999999999999999999882 3999999999999988775687 666777778 99999999999999999887
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKI 223 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~l 223 (341)
+ .+ + +++||++++|++.+.+++.++ .+.+ +++++||+|...+.|.+.++.+...++ +..+.++++
T Consensus 77 l-~~----~-~~ivv~~~~g~~~~~l~~~~~------~~~~-~v~~~~~~~~~~~~g~~~i~~~~~~~~--~~~~~~~~l 141 (263)
T 1yqg_A 77 I-RT----N-GALVLSVAAGLSVGTLSRYLG------GTRR-IVRVMPNTPGKIGLGVSGMYAEAEVSE--TDRRIADRI 141 (263)
T ss_dssp C-CC----T-TCEEEECCTTCCHHHHHHHTT------SCCC-EEEEECCGGGGGTCEEEEEECCTTSCH--HHHHHHHHH
T ss_pred h-cc----C-CCEEEEecCCCCHHHHHHHcC------CCCc-EEEEcCCHHHHHcCceEEEEcCCCCCH--HHHHHHHHH
Confidence 7 43 2 789999999999999988887 4457 889999999999888887777655556 888999999
Q ss_pred HHhcCCeEEcC-CCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q psy316 224 MEQGGIVEIIP-ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAH 302 (341)
Q Consensus 224 l~~lG~~~~v~-e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~ 302 (341)
|+.+|..++++ ++.+|.+++++|++|+|++.+++++.+++.+.|++++++.+++.+++.|+.+++.. .+.+
T Consensus 142 ~~~~g~~~~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 213 (263)
T 1yqg_A 142 MKSVGLTVWLDDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQ--------TGED 213 (263)
T ss_dssp HHTTEEEEECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH--------HCCC
T ss_pred HHhCCCEEEeCChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--------cCCC
Confidence 99999888887 89999999999999999999999999999999999999999999999999988876 6778
Q ss_pred hHHHHHhcCCCchHHHHHHHHHHhCCchHHHHHHHHhh
Q psy316 303 PAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340 (341)
Q Consensus 303 p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~~a~~~a 340 (341)
|..|.+.+++|||+|..+++.|++.+++..+.+++.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~a~~~~ 251 (263)
T 1yqg_A 214 FEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCAC 251 (263)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChhHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998875
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=235.03 Aligned_cols=243 Identities=13% Similarity=0.099 Sum_probs=195.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|||+|||+|+||+++++.|.++|+ +|++|+|++++++.+.+ .|+ ...++.++ .++|+||+|||++.+.+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~ 74 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGH----YLIGVSRQQSTCEKAVE-RQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTL 74 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHh-CCCCccccCCHHHh-CCCCEEEEECCHHHHHHHH
Confidence 589999999999999999999984 89999999999888765 565 34567777 8999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCc------hhh----hcCc-eEEEEeCCCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNT------AMK----YGKG-ITGMCHDVHL 210 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~------p~~----v~~g-~~~l~~~~~~ 210 (341)
.++ .+.+ +++++|+++ ++++...++..... ..+ ++..+|.. |.. ...| .+.+++.+..
T Consensus 75 ~~l-~~~~--~~~~~vv~~-~~~~~~~~~~~~~~------~~~-~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~ 143 (279)
T 2f1k_A 75 EKL-IPHL--SPTAIVTDV-ASVKTAIAEPASQL------WSG-FIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT 143 (279)
T ss_dssp HHH-GGGS--CTTCEEEEC-CSCCHHHHHHHHHH------STT-CEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred HHH-HhhC--CCCCEEEEC-CCCcHHHHHHHHHH------hCC-EeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCC
Confidence 999 8888 788999987 66776555544331 113 33333321 111 1133 5667765545
Q ss_pred CccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHH
Q psy316 211 DKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIP--RDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 211 ~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~--~~~a~~lv~~~~~gs~~l 287 (341)
++ +..+.++++|+.+|.. +++++..++.++++++++|+|++. ++.+++...|++ ++.+..++.+++.++.++
T Consensus 144 ~~--~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~---al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~ 218 (279)
T 2f1k_A 144 DP--EQLACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA---ALIQACAGEKDGDILKLAQNLASSGFRDTSRV 218 (279)
T ss_dssp CH--HHHHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH---HHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTG
T ss_pred CH--HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH---HHHHHHHhcccccchhHHHhhcCCcccchhcc
Confidence 56 8889999999999975 556888899999999999998776 788888888887 789999999999998877
Q ss_pred HHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH----HHHHhh
Q psy316 288 VHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS----SAARRT 340 (341)
Q Consensus 288 ~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~----~a~~~a 340 (341)
.. .+|..|++.+++|+|+|+++|+.|++ ++|+..+. +++.++
T Consensus 219 ~~-----------~~p~~~~~~~~s~~~~~~~~l~~~~~~l~~~~~~i~~~d~~a~~~~ 266 (279)
T 2f1k_A 219 GG-----------GNPELGTMMATYNQRALLKSLQDYRQHLDQLITLISNQQWPELHRL 266 (279)
T ss_dssp GG-----------SCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cC-----------CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 63 48999999999999999999999999 89999999 888764
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=228.02 Aligned_cols=241 Identities=15% Similarity=0.146 Sum_probs=189.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|+|||+|||+ |+||++++++|.++|+ +|++|+|++++++.+.+ +|+...++.++++++|+||+|||++.+.+++
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~----~V~~~~r~~~~~~~~~~-~g~~~~~~~~~~~~aDvVi~av~~~~~~~v~ 84 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAH----HLAAIEIAPEGRDRLQG-MGIPLTDGDGWIDEADVVVLALPDNIIEKVA 84 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSS----EEEEECCSHHHHHHHHH-TTCCCCCSSGGGGTCSEEEECSCHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHh-cCCCcCCHHHHhcCCCEEEEcCCchHHHHHH
Confidence 5689999999 9999999999999984 99999999999888776 5772236677889999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh--------hcCc-------eEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK--------YGKG-------ITGMCH 206 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~--------v~~g-------~~~l~~ 206 (341)
+++ .+.+ +++++||+++++.+.+.+++. . .+.+ +++.+|+.|.. ...| .+.++.
T Consensus 85 ~~l-~~~l--~~~~ivv~~s~~~~~~~l~~~-~------~~~~-~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~ 153 (286)
T 3c24_A 85 EDI-VPRV--RPGTIVLILDAAAPYAGVMPE-R------ADIT-YFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCA 153 (286)
T ss_dssp HHH-GGGS--CTTCEEEESCSHHHHHTCSCC-C------TTSE-EEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEE
T ss_pred HHH-HHhC--CCCCEEEECCCCchhHHHHhh-h------CCCe-EEecCCCCccccccccchhhccCcccccccceeeee
Confidence 999 8888 789999998887765555432 2 3457 88999998765 5666 344433
Q ss_pred CCCCCccHHHHHHHHHHHHhcCC----eEEcCCCchhHH-HHHh-cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy316 207 DVHLDKESEHLNMAIKIMEQGGI----VEIIPESMMNSF-GAIA-GSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQL 280 (341)
Q Consensus 207 ~~~~~~~~~~~~~v~~ll~~lG~----~~~v~e~~~d~~-~al~-g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~ 280 (341)
....++ +..+.++++|+.+|. +++++++.++.+ .+++ +++++|++.++|++.+++.+.|++++++++++.++
T Consensus 154 ~~~~~~--~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~ 231 (286)
T 3c24_A 154 LMQGPE--EHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGH 231 (286)
T ss_dssp EEESCT--HHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ccCCCH--HHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 222345 889999999999998 566788888888 7766 68899999999999999988999999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHhCCchHHHH
Q psy316 281 LKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFS 334 (341)
Q Consensus 281 ~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~~~~~~~~~ 334 (341)
+.|++.++.+ .+|..|.+...++ .......+++.+++..+.
T Consensus 232 ~~~~~~~~~~----------~~p~~~~di~~~~---i~~~~~~l~~~~~~~~~~ 272 (286)
T 3c24_A 232 LNVEIAMWFG----------YSPKVPSDAALRL---MEFAKDIVVKEDWREALN 272 (286)
T ss_dssp HHHHHHHHTT----------SSCCC---CCSTT---HHHHHHHHBCTTGGGGGC
T ss_pred HHHHHHHHHh----------hCCchhHHHHHHH---HHHHHHHHhccCHHHhcC
Confidence 9999887743 5788888877776 334444466666665544
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-27 Score=218.51 Aligned_cols=238 Identities=13% Similarity=0.170 Sum_probs=180.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhh-cCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIK-EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~-~aDvIilaV~~~~v~~v 140 (341)
+||+|||+|+||.++++.|.++|+ ..+|++|+|++++++.+.+ +|+ ...++.+++. ++|+||+|||++.+.++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~--~~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v 78 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGYDINPESISKAVD-LGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI 78 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC--CSEEEEECSCHHHHHHHHH-TTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHH-CCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHH
Confidence 689999999999999999999883 2389999999998887765 565 2457778888 99999999999999999
Q ss_pred HHHhhhcccccCCCcEEEEecCCCC--HHHHHHhccccCCCCCCCCeEEEEcCCc------hhh----hcCce-EEEEeC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLSVLVPNPNDAPTIIRVMPNT------AMK----YGKGI-TGMCHD 207 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~~~~~~~~~~~~vvr~mpn~------p~~----v~~g~-~~l~~~ 207 (341)
+.++ .+.+ +++++|+++.++.. .+.+++.++ . . ++..+|.. |.. ...|. +++++.
T Consensus 79 ~~~l-~~~l--~~~~iv~~~~~~~~~~~~~l~~~l~------~--~-~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~ 146 (281)
T 2g5c_A 79 AKKL-SYIL--SEDATVTDQGSVKGKLVYDLENILG------K--R-FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPT 146 (281)
T ss_dssp HHHH-HHHS--CTTCEEEECCSCCTHHHHHHHHHHG------G--G-EECEEEECCCSCCSGGGCCSSTTTTCEEEECCC
T ss_pred HHHH-HhhC--CCCcEEEECCCCcHHHHHHHHHhcc------c--c-ceeeccccCCccCChhhhhhHHhCCCCEEEecC
Confidence 9998 8888 78888777644332 245666665 1 2 22222211 111 12454 666665
Q ss_pred CCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy316 208 VHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYL-FLVMDAMADGAVKQGIPRDMALRIGAQLLKGSG 285 (341)
Q Consensus 208 ~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~-~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~ 285 (341)
...++ +..+.++++|+.+|..+ ++++..+|.++++++++|+|+ +.+++++ ...|++++.+..++.+++.+++
T Consensus 147 ~~~~~--~~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ 220 (281)
T 2g5c_A 147 KKTDK--KRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALVDTL----IHMSTPEVDLFKYPGGGFKDFT 220 (281)
T ss_dssp SSSCH--HHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH----HHHCBTTBCGGGCCTTTGGGC-
T ss_pred CCCCH--HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccchHHHHhhccccHHHHh
Confidence 44556 88999999999999865 567778899999999999986 4444444 4467888888899999999987
Q ss_pred HHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH
Q psy316 286 QLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS 334 (341)
Q Consensus 286 ~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~ 334 (341)
++.. .+|..|++.+++|+|+|+++|+.|++ .+++..+.
T Consensus 221 r~~~-----------~~p~~~~~~~~sn~~~~~~~l~~~~~~l~~~~~~i~ 260 (281)
T 2g5c_A 221 RIAK-----------SDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIV 260 (281)
T ss_dssp --CC-----------SCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc-----------CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7653 48999999999999999999999999 77777664
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=215.52 Aligned_cols=238 Identities=11% Similarity=0.061 Sum_probs=181.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+|||+|||+|+||++++++|.++|+ .++|++|+|++++++.+.+ .|. .+.++.+++.++|+||+|||++.+.++
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~--~~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v 82 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHP--HYKIVGYNRSDRSRDIALE-RGIVDEATADFKVFAALADVIILAVPIKKTIDF 82 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT--TSEEEEECSSHHHHHHHHH-TTSCSEEESCTTTTGGGCSEEEECSCHHHHHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCC--CcEEEEEcCCHHHHHHHHH-cCCcccccCCHHHhhcCCCEEEEcCCHHHHHHH
Confidence 3689999999999999999998852 3589999999998887765 464 345677788999999999999999999
Q ss_pred HHHhhhcc-cccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCCchhh------hc-------Cce-E
Q psy316 141 IQGLVNDK-VTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPNTAMK------YG-------KGI-T 202 (341)
Q Consensus 141 l~~i~~~~-l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~------v~-------~g~-~ 202 (341)
+.++ .+. + +++++|+++ ++++. +.+++.++ . . .++++|++|.. .+ .|. +
T Consensus 83 ~~~l-~~~~l--~~~~ivi~~-~~~~~~~~~~l~~~l~------~--~-~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~ 149 (290)
T 3b1f_A 83 IKIL-ADLDL--KEDVIITDA-GSTKYEIVRAAEYYLK------D--K-PVQFVGSHPMAGSHKSGAVAANVNLFENAYY 149 (290)
T ss_dssp HHHH-HTSCC--CTTCEEECC-CSCHHHHHHHHHHHHT------T--S-SCEEEEEEEC-----CCTTSCCTTTTTTSEE
T ss_pred HHHH-HhcCC--CCCCEEEEC-CCCchHHHHHHHHhcc------c--c-CCEEEEeCCcCCCCcchHHHhhHHHhCCCeE
Confidence 9999 888 8 788888866 44443 56667666 2 1 23455554441 11 343 5
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHH-hcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAI-AGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQL 280 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al-~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~ 280 (341)
++++....++ +..+.++++|+.+|..+ +++++.+|.+++. ++++|.+.+.+++++.+ .|++.+.+..++.++
T Consensus 150 ~~~~~~~~~~--~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~s~~~~~~a~~~~~~~~~----~g~~~~~~~~la~~~ 223 (290)
T 3b1f_A 150 IFSPSCLTKP--NTIPALQDLLSGLHARYVEIDAAEHDCVTSQISHFPHIIASSLMKQAGD----FSESHEMTKHFAAGG 223 (290)
T ss_dssp EEEECTTCCT--THHHHHHHHTGGGCCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHH----HHHHCTHHHHHCCHH
T ss_pred EEecCCCCCH--HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHh----cccchhhHHhhcccc
Confidence 6666554556 78899999999999876 5688888877444 55555555566666654 466667889999999
Q ss_pred HHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH
Q psy316 281 LKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS 334 (341)
Q Consensus 281 ~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~ 334 (341)
+.++.+++. .+|..|++.+++|+|+|+++|+.|++ ..++..+.
T Consensus 224 ~~~~~rla~-----------~~p~~~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l~ 268 (290)
T 3b1f_A 224 FRDMTRIAE-----------SEPGMWTSILLTNQEAVLDRIENFKQRLDEVSNLIK 268 (290)
T ss_dssp HHHTTGGGG-----------SCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhc-----------CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877663 48999999999999999999999998 56766665
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-26 Score=212.45 Aligned_cols=225 Identities=15% Similarity=0.125 Sum_probs=167.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|.+||+||| +|+||++++++|.++|+ +|++|+|+++. ++.+++.++|+||+|||++.+.+++
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~----~V~~~~~~~~~-------------~~~~~~~~aDvVilavp~~~~~~vl 82 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGY----PISILDREDWA-------------VAESILANADVVIVSVPINLTLETI 82 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC----CEEEECTTCGG-------------GHHHHHTTCSEEEECSCGGGHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCC----eEEEEECCccc-------------CHHHHhcCCCEEEEeCCHHHHHHHH
Confidence 557899999 99999999999999984 89999998642 4567788999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchh--hhcCc-eEEEEeCCCCCccHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAM--KYGKG-ITGMCHDVHLDKESEHLN 218 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~--~v~~g-~~~l~~~~~~~~~~~~~~ 218 (341)
.++ .+.+ +++++|+++ ++++...++..... ...+ ++..+|.... ....| .++++++. ++ +..+
T Consensus 83 ~~l-~~~l--~~~~iv~~~-~svk~~~~~~~~~~-----~~~~-~v~~hP~~g~~~~~~~g~~~~l~~~~--~~--~~~~ 148 (298)
T 2pv7_A 83 ERL-KPYL--TENMLLADL-TSVKREPLAKMLEV-----HTGA-VLGLHPMFGADIASMAKQVVVRCDGR--FP--ERYE 148 (298)
T ss_dssp HHH-GGGC--CTTSEEEEC-CSCCHHHHHHHHHH-----CSSE-EEEEEECSCTTCSCCTTCEEEEEEEE--CG--GGTH
T ss_pred HHH-Hhhc--CCCcEEEEC-CCCCcHHHHHHHHh-----cCCC-EEeeCCCCCCCchhhcCCeEEEecCC--CH--HHHH
Confidence 999 8888 778766655 67776555544331 1123 4433332111 11223 45566543 45 7788
Q ss_pred HHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----HHHHHHhhh
Q psy316 219 MAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLF-LVMDAMADGAVKQGIPRDMALRIGAQLLKG----SGQLVHKDL 292 (341)
Q Consensus 219 ~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~-~~~eal~ea~~~~Gl~~~~a~~lv~~~~~g----s~~l~~~~~ 292 (341)
.++++|+.+|..+ +++++.+|.++++++++|+|++ .+++++ .+.|++.+.+.+++.+++.+ +.++.
T Consensus 149 ~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l----~~~g~~~~~~~~la~~~f~~~~~~~~ria---- 220 (298)
T 2pv7_A 149 WLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTFANGLHL----SKQPINLANLLALSSPIYRLELAMIGRLF---- 220 (298)
T ss_dssp HHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHH----TTSSCCHHHHHHTCCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCHHHHHhhcCHHHHHHHHHHHHHh----
Confidence 9999999999865 5688889999999999999864 444444 35899999999999999999 55544
Q ss_pred hhccccCCCChHHHHHhcCCCchHHHHHHHHHHh--CCchHHHH
Q psy316 293 LRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK--AGVRTPFS 334 (341)
Q Consensus 293 ~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~--~~~~~~~~ 334 (341)
+.+|..|++.+++|+|+|+ +|+.|++ ..++..+.
T Consensus 221 -------~~~p~~~~di~~sn~~~~~-~l~~~~~~l~~~~~~l~ 256 (298)
T 2pv7_A 221 -------AQDAELYADIIMDKSENLA-VIETLKQTYDEALTFFE 256 (298)
T ss_dssp -------TSCHHHHHHHHC----CHH-HHHHHHHHHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHH
Confidence 2489999999999999999 9999988 45655554
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-26 Score=214.96 Aligned_cols=233 Identities=14% Similarity=0.160 Sum_probs=184.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHH-HhhcCCEEEEeeChHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHR-IIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e-~~~~aDvIilaV~~~~v 137 (341)
+|.|||+|||+|+||.+|+++|.++|+ ..+|++|||++++++.+.+ .|+ ...++.+ ++.+||+||+|||++.+
T Consensus 31 ~~~~kI~IIG~G~mG~slA~~l~~~G~--~~~V~~~dr~~~~~~~a~~-~G~~~~~~~~~~~~~~~~aDvVilavp~~~~ 107 (314)
T 3ggo_A 31 LSMQNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGYDINPESISKAVD-LGIIDEGTTSIAKVEDFSPDFVMLSSPVRTF 107 (314)
T ss_dssp CSCSEEEEESCSHHHHHHHHHHHHTTC--CSEEEEECSCHHHHHHHHH-TTSCSEEESCTTGGGGGCCSEEEECSCGGGH
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCCC--CCEEEEEECCHHHHHHHHH-CCCcchhcCCHHHHhhccCCEEEEeCCHHHH
Confidence 366899999999999999999999994 2389999999998887766 565 3567778 89999999999999999
Q ss_pred HHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhccccCCCCCCCCeEEEEcCCchhhh----------cCc-eEE
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY----------GKG-ITG 203 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v----------~~g-~~~ 203 (341)
.++++++ .+.+ +++++|+++. +++ .+.+++.++ . + ++..+|...... -.| .++
T Consensus 108 ~~vl~~l-~~~l--~~~~iv~d~~-Svk~~~~~~~~~~l~------~--~-~v~~hPm~G~e~sG~~~A~~~Lf~g~~~i 174 (314)
T 3ggo_A 108 REIAKKL-SYIL--SEDATVTDQG-SVKGKLVYDLENILG------K--R-FVGGHPIAGTEKSGVEYSLDNLYEGKKVI 174 (314)
T ss_dssp HHHHHHH-HHHS--CTTCEEEECC-SCCTHHHHHHHHHHG------G--G-EECEEECCCCCCCSGGGCCTTTTTTCEEE
T ss_pred HHHHHHH-hhcc--CCCcEEEECC-CCcHHHHHHHHHhcC------C--C-EEecCcccCCcccchhhhhhhhhcCCEEE
Confidence 9999999 8888 8898888874 444 455666665 2 5 666666433211 134 566
Q ss_pred EEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy316 204 MCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLK 282 (341)
Q Consensus 204 l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~ 282 (341)
+++++..++ +.++.++++|+.+|.. ++++++.+|.++++++++|++++.. |.....+.+.+.+.+.++..++|+
T Consensus 175 l~~~~~~~~--~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~---l~~~~~~~~~~~~~~~~~a~~~fr 249 (314)
T 3ggo_A 175 LTPTKKTDK--KRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAFA---LVDTLIHMSTPEVDLFKYPGGGFK 249 (314)
T ss_dssp ECCCTTSCH--HHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHH---HHHHHHHHCCSSCCGGGCCTTTTT
T ss_pred EEeCCCCCH--HHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcchHHHHhhccccHH
Confidence 777665666 8999999999999986 4579999999999999999988653 444444556666677788889999
Q ss_pred HHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 283 GSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 283 gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
+..++.. .+|..|.+.+.++.+.+.+.|+.+++
T Consensus 250 d~tRia~-----------~~p~~w~di~~~N~~~~~~~l~~~~~ 282 (314)
T 3ggo_A 250 DFTRIAK-----------SDPIMWRDIFLENKENVMKAIEGFEK 282 (314)
T ss_dssp THHHHTT-----------SCHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHhc-----------CCHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 8877653 38999999999999988888888876
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=219.27 Aligned_cols=205 Identities=16% Similarity=0.227 Sum_probs=167.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhc------CCCCCCeEEEEcCChhhhhhcCcCCCc-c----ccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT------GLCIPAQIIASAPSERFKLHWPEPMDF-A----LNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~------G~~~~~~V~v~~r~~e~~~~l~~~~g~-~----~~s~~e~~~~aDvIilaV~ 133 (341)
+||+|||+|+||.+++++|.++ |+ +|+++.|+..+....+.+.|+ . ..++.+++++||+||++||
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~----~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP 130 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLIS 130 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCC----EEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSC
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCC----EEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCC
Confidence 7999999999999999999999 85 888776654333222223576 3 2688999999999999999
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHH---hccccCCCCCCCCeEEEEcCCchhhh-------c-----
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK---KLSVLVPNPNDAPTIIRVMPNTAMKY-------G----- 198 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~---~l~~~~~~~~~~~~vvr~mpn~p~~v-------~----- 198 (341)
++...+++.++ .+.+ +++++ |++++|+++..+++ .++ .+.+ |+|+|||+|... +
T Consensus 131 ~~~~~eVl~eI-~p~L--K~GaI-Ls~AaGf~I~~le~~~i~~p------~dv~-VVrVmPNtPg~~VR~~y~~G~~~~g 199 (525)
T 3fr7_A 131 DAAQADNYEKI-FSHM--KPNSI-LGLSHGFLLGHLQSAGLDFP------KNIS-VIAVCPKGMGPSVRRLYVQGKEING 199 (525)
T ss_dssp HHHHHHHHHHH-HHHS--CTTCE-EEESSSHHHHHHHHTTCCCC------TTSE-EEEEEESSCHHHHHHHHHHHTTSTT
T ss_pred hHHHHHHHHHH-HHhc--CCCCe-EEEeCCCCHHHHhhhcccCC------CCCc-EEEEecCCCchhHHHHHhccccccc
Confidence 99888999999 9999 88887 68889999988876 444 4678 999999999986 5
Q ss_pred CceE-EEEeCCCCCccHHHHHHHHHHHHhcCCeEEc--------CCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCC
Q psy316 199 KGIT-GMCHDVHLDKESEHLNMAIKIMEQGGIVEII--------PESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIP 269 (341)
Q Consensus 199 ~g~~-~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v--------~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~ 269 (341)
+|++ .++...+.+. +..+.+..++..+|....+ .+++++..++++|++|+|+ +++.+++++.|++
T Consensus 200 ~Gv~~liAv~qd~tg--ea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAli----eA~~d~lVe~G~~ 273 (525)
T 3fr7_A 200 AGINSSFAVHQDVDG--RATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIV----EALFRRYTEQGMD 273 (525)
T ss_dssp CSCCEEEEEEECSSS--CHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHH----HHHHHHHHHTTCC
T ss_pred CCccEEEEcCCCCCH--HHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHH----HHHHHHHHHcCCC
Confidence 7877 5555455666 7889999999999986432 1347778889999999965 7888888999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHh
Q psy316 270 RDMALRIGAQLLK-GSGQLVHK 290 (341)
Q Consensus 270 ~~~a~~lv~~~~~-gs~~l~~~ 290 (341)
++.|+.+..+++. +.+.|+.+
T Consensus 274 pe~Ay~~~~qel~~~i~~li~e 295 (525)
T 3fr7_A 274 EEMAYKNTVEGITGIISKTISK 295 (525)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 99999877
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=206.32 Aligned_cols=225 Identities=13% Similarity=0.109 Sum_probs=173.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc----CCEEEEeeChHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE----AEYVFLAMKPQY 136 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~----aDvIilaV~~~~ 136 (341)
++.+||+|||+|+||++|+++|.++|+ +|++|||++++++.+.+ +|+ ...++.+++.+ +|+||+|||++.
T Consensus 6 ~~~~kIgIIG~G~mG~slA~~L~~~G~----~V~~~dr~~~~~~~a~~-~G~~~~~~~~e~~~~a~~~aDlVilavP~~~ 80 (341)
T 3ktd_A 6 DISRPVCILGLGLIGGSLLRDLHAANH----SVFGYNRSRSGAKSAVD-EGFDVSADLEATLQRAAAEDALIVLAVPMTA 80 (341)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTC----CEEEECSCHHHHHHHHH-TTCCEESCHHHHHHHHHHTTCEEEECSCHHH
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeeeCCHHHHHHhcccCCCEEEEeCCHHH
Confidence 356799999999999999999999984 99999999998887766 687 66777777664 799999999999
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEEcCCchhhhc-------------Cc
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRVMPNTAMKYG-------------KG 200 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~mpn~p~~v~-------------~g 200 (341)
+.++++++ .+. +++++|+++ ++++...+ ++.++ +.+ ++ |++|.... .|
T Consensus 81 ~~~vl~~l-~~~---~~~~iv~Dv-~Svk~~i~~~~~~~~~-------~~~-~v---~~HPmaG~e~sG~~aa~~~Lf~g 144 (341)
T 3ktd_A 81 IDSLLDAV-HTH---APNNGFTDV-VSVKTAVYDAVKARNM-------QHR-YV---GSHPMAGTANSGWSASMDGLFKR 144 (341)
T ss_dssp HHHHHHHH-HHH---CTTCCEEEC-CSCSHHHHHHHHHTTC-------GGG-EE---CEEECCSCC-CCGGGCCSSTTTT
T ss_pred HHHHHHHH-Hcc---CCCCEEEEc-CCCChHHHHHHHHhCC-------CCc-Ee---cCCccccccccchhhhhhHHhcC
Confidence 99999998 774 577777765 66765543 33332 123 33 44443321 12
Q ss_pred -eEEEEeCCCCCccHH--------HHHHHHHHHHhcCC-eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCH
Q psy316 201 -ITGMCHDVHLDKESE--------HLNMAIKIMEQGGI-VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPR 270 (341)
Q Consensus 201 -~~~l~~~~~~~~~~~--------~~~~v~~ll~~lG~-~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~ 270 (341)
.+++++++..++ + .++.++++|+.+|. +++++++.||.++++++++|++++.. |+..... +.
T Consensus 145 ~~~iltp~~~~~~--e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~a---L~~~~~~---~~ 216 (341)
T 3ktd_A 145 AVWVVTFDQLFDG--TDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAET---LAIVGDN---GG 216 (341)
T ss_dssp CEEEECCGGGTSS--CCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHH---HHHHHHH---TH
T ss_pred CeEEEEeCCCCCh--hhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHHH---HHHHhhc---ch
Confidence 467777655555 6 78999999999995 45679999999999999999988774 3443322 24
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHHh
Q psy316 271 DMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALEK 326 (341)
Q Consensus 271 ~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~~ 326 (341)
+.+..+..++|++..++.. .+|..|.+.+.+|.+.+.+.|+.|++
T Consensus 217 ~~~~~laa~gfrd~tRia~-----------s~p~lw~di~~~N~~~~~~~l~~~~~ 261 (341)
T 3ktd_A 217 ALSLSLAAGSYRDSTRVAG-----------TDPGLVRAMCESNAGPLVKALDEALA 261 (341)
T ss_dssp HHHHHHCCHHHHHHTGGGG-----------SCHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHhc-----------CCHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 6778888889988777543 48999999999999999999988877
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=200.51 Aligned_cols=223 Identities=16% Similarity=0.085 Sum_probs=158.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
|+|||+|||+|+||.+|+++|.++ + +| .+|+|++++++.+.+++|..+.++.++++++|+||+|||++.+.+++
T Consensus 1 M~m~I~iIG~G~mG~~la~~l~~~-~----~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~~~~v~ 75 (276)
T 2i76_A 1 MSLVLNFVGTGTLTRFFLECLKDR-Y----EIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVA 75 (276)
T ss_dssp ---CCEEESCCHHHHHHHHTTC---------CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHc-C----cEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHHHHHHH
Confidence 567999999999999999999776 4 78 59999999988876545543345666778899999999999999998
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc--CceEEEEeCCCCCccHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG--KGITGMCHDVHLDKESEHLNM 219 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~--~g~~~l~~~~~~~~~~~~~~~ 219 (341)
.++ . . ++++||+++++++.+.++.... .... .++.+||.|..++ .+......++ + +.++.
T Consensus 76 ~~l-~--~---~~~ivi~~s~~~~~~~l~~~~~------~~~~-p~~~~~g~~~~~~~~~~~~~~~~~~---~--~~~~~ 137 (276)
T 2i76_A 76 NHL-N--L---GDAVLVHCSGFLSSEIFKKSGR------ASIH-PNFSFSSLEKALEMKDQIVFGLEGD---E--RGLPI 137 (276)
T ss_dssp TTT-C--C---SSCCEEECCSSSCGGGGCSSSE------EEEE-ECSCC--CTTGGGCGGGCCEEECCC---T--TTHHH
T ss_pred HHh-c--c---CCCEEEECCCCCcHHHHHHhhc------cccc-hhhhcCCCchhHHHhCCCeEEEEeC---h--HHHHH
Confidence 887 4 2 6789999988888776554321 0001 1224566555443 3443444332 3 56889
Q ss_pred HHHHHHhcCC-eEEcCCC---chhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy316 220 AIKIMEQGGI-VEIIPES---MMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRM 295 (341)
Q Consensus 220 v~~ll~~lG~-~~~v~e~---~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~ 295 (341)
++++|+.+|. +++++++ .++..++++++++.+++..+. ..+.+.|++++++. +.+++.++..++.+
T Consensus 138 ~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a~---~~~~~~Gl~~~~a~--~~~l~~~~~~~~~~----- 207 (276)
T 2i76_A 138 VKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVALAYLSK---RIYTLLGLDEPELL--IHTLMKGVADNIKK----- 207 (276)
T ss_dssp HHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHHHHHHHHH---HHHHTTTCSCHHHH--HHHHHHHHHHHHHH-----
T ss_pred HHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCChHHHH--HHHHHHHHHHHHHh-----
Confidence 9999999995 6778765 467788888888876655443 34567999999875 88899999999887
Q ss_pred cccCCCChHHHHHhcCCCc-----hHHHHHHHHHHh
Q psy316 296 DHAAQAHPAVIKDQICSPG-----GSTIAGIHALEK 326 (341)
Q Consensus 296 ~~~~~~~p~~l~~~v~tpg-----G~t~~~l~~l~~ 326 (341)
.+ | .+.+++|+ |+|+.+|+.|++
T Consensus 208 ---~g--p---~~~~tgP~~r~D~~t~~~~l~~l~~ 235 (276)
T 2i76_A 208 ---MR--V---ECSLTGPVKRGDWQVVEEERREYEK 235 (276)
T ss_dssp ---SC--G---GGGCCSHHHHTCHHHHHHHHHHHHH
T ss_pred ---cC--h---HhhCCCCcccCCHHHHHHHHHHHhc
Confidence 55 4 78899998 999999999998
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-23 Score=197.62 Aligned_cols=220 Identities=15% Similarity=0.220 Sum_probs=167.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
.|||+|||+|+||++++++|.++|+ +|++++|++++ .+...+ .|+ .. ++.++++++|+||+|||++...+++
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~----~V~~~~~~~~~~~~~a~~-~G~~~~-~~~e~~~~aDvVilavp~~~~~~v~ 89 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGV----DVTVGLRSGSATVAKAEA-HGLKVA-DVKTAVAAADVVMILTPDEFQGRLY 89 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTC----CEEEECCTTCHHHHHHHH-TTCEEE-CHHHHHHTCSEEEECSCHHHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHCcC----EEEEEECChHHHHHHHHH-CCCEEc-cHHHHHhcCCEEEEeCCcHHHHHHH
Confidence 4689999999999999999999985 89999998765 444433 577 54 7888899999999999999999999
Q ss_pred H-HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh-------hcCceEEE-EeCCCCCc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK-------YGKGITGM-CHDVHLDK 212 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~-------v~~g~~~l-~~~~~~~~ 212 (341)
. ++ .+.+ +++++|+++ +|++. .+..... +.+.. +++.+|+.|.. .|.|...+ ++....+.
T Consensus 90 ~~~i-~~~l--~~~~ivi~~-~gv~~-~~~~~~~-----~~~~~-vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~ 158 (338)
T 1np3_A 90 KEEI-EPNL--KKGATLAFA-HGFSI-HYNQVVP-----RADLD-VIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASG 158 (338)
T ss_dssp HHHT-GGGC--CTTCEEEES-CCHHH-HTTSSCC-----CTTCE-EEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSS
T ss_pred HHHH-HhhC--CCCCEEEEc-CCchh-HHHhhcC-----CCCcE-EEeccCCCCchhHHHHHhccCCCeEEEEecCCCCH
Confidence 8 99 8888 888898875 66554 3333221 03456 88999988764 45565544 55444455
Q ss_pred cHHHHHHHHHHHHhcCC----eEEcC---CCchhHH---HHHhcchHHHHHHHHHHHHHHHHHcCCCHHHH-------HH
Q psy316 213 ESEHLNMAIKIMEQGGI----VEIIP---ESMMNSF---GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMA-------LR 275 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~----~~~v~---e~~~d~~---~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a-------~~ 275 (341)
+..+.+..+++.+|. +++++ ++.++.+ ++++|++|++++..++.|. +.|++++.+ .+
T Consensus 159 --~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~----~~Gl~~~~a~~e~~~~~~ 232 (338)
T 1np3_A 159 --NAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLV----EAGYAPEMAYFECLHELK 232 (338)
T ss_dssp --CHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH----HTTCCHHHHHHHHTTTHH
T ss_pred --HHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHH----HcCCCHHHHHHHhhhHHH
Confidence 778899999999998 45554 3445555 3677889999888776654 689999988 78
Q ss_pred HHHHH-HHHHHHHHHhhhhhccccCCCChHHHHHhcCCCc
Q psy316 276 IGAQL-LKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPG 314 (341)
Q Consensus 276 lv~~~-~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpg 314 (341)
++.++ ..|+...++. .+.+|.+|.+.+++|+
T Consensus 233 ~~~~~~~~gg~~~~r~--------a~s~p~~~~d~~~~~~ 264 (338)
T 1np3_A 233 LIVDLMYEGGIANMNY--------SISNNAEYGEYVTGPE 264 (338)
T ss_dssp HHHHHHHHHHHHHHHH--------HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHH--------hcCCHHHHhhhhcCCc
Confidence 88888 5676333355 6779999999999996
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=183.74 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=152.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
|.+||||||+|+||.+|+++|+++|+ +|++|||++++.+.+.+ .|. ...++.|+++.+|+||+|+|+ .+++++
T Consensus 4 Ms~kIgfIGLG~MG~~mA~~L~~~G~----~V~v~dr~~~~~~~l~~-~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v 78 (297)
T 4gbj_A 4 MSEKIAFLGLGNLGTPIAEILLEAGY----ELVVWNRTASKAEPLTK-LGATVVENAIDAITPGGIVFSVLADDAAVEEL 78 (297)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHTTC----EEEEC-------CTTTT-TTCEECSSGGGGCCTTCEEEECCSSHHHHHHH
T ss_pred CCCcEEEEecHHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHH-cCCeEeCCHHHHHhcCCceeeeccchhhHHHH
Confidence 88899999999999999999999995 99999999999999988 588 888999999999999999986 456666
Q ss_pred H-HHhhhcccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEE-cCCchhhhcCc-eEEEEeCCCCCccH
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKG-ITGMCHDVHLDKES 214 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g-~~~l~~~~~~~~~~ 214 (341)
+ .++ .+.+ .+++++|+++ .++++.. .+.+.. .+.. ++.+ +...|.....| .++++.++ +
T Consensus 79 ~~~~~-~~~~--~~~~iiid~s-T~~p~~~~~~~~~~~~-----~g~~-~ldapVsGg~~~a~~g~l~im~gG~---~-- 143 (297)
T 4gbj_A 79 FSMEL-VEKL--GKDGVHVSMS-TISPETSRQLAQVHEW-----YGAH-YVGAPIFARPEAVRAKVGNICLSGN---A-- 143 (297)
T ss_dssp SCHHH-HHHH--CTTCEEEECS-CCCHHHHHHHHHHHHH-----TTCE-EEECCEECCHHHHHHTCCEEEEEEC---H--
T ss_pred HHHHH-Hhhc--CCCeEEEECC-CCChHHHHHHHHHHHh-----cCCc-eecCCcCCCccccccccceeecccc---h--
Confidence 5 345 6667 7889999874 5565443 333331 2333 3321 11233333344 35666664 3
Q ss_pred HHHHHHHHHHHhcCCeE-EcCC-CchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHH
Q psy316 215 EHLNMAIKIMEQGGIVE-IIPE-SMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVH 289 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~-~v~e-~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~ 289 (341)
+.++.++++|+.+|..+ ++.+ ......+.+. .+.+.+..+.++.|+ +.+.|++++++++++..+..++.. +.
T Consensus 144 ~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~--~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~-~~ 220 (297)
T 4gbj_A 144 GAKERIKPIVENFVKGVFDFGDDPGAANVIKLA--GNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPI-FQ 220 (297)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHH-HH
T ss_pred hHHHHHHHHHHHhhCCeEEecCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCch-hh
Confidence 88999999999999865 4554 3444445543 345666666667665 569999999999999887766533 33
Q ss_pred hhhhhccccCCCChHHHHHhcCCC-chHHHHHHHHH
Q psy316 290 KDLLRMDHAAQAHPAVIKDQICSP-GGSTIAGIHAL 324 (341)
Q Consensus 290 ~~~~~~~~~~~~~p~~l~~~v~tp-gG~t~~~l~~l 324 (341)
. ....+.+.-+.| +++....++.|
T Consensus 221 ~-----------~~~~~~~~~~~p~~f~~~l~~KDl 245 (297)
T 4gbj_A 221 N-----------YGKLVASNTYEPVAFRFPLGLKDI 245 (297)
T ss_dssp H-----------HHHHHHHTCCCSCSSBHHHHHHHH
T ss_pred c-----------cCccccCCCCCCccchhHHHHHHH
Confidence 3 344455555565 44555555544
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=183.62 Aligned_cols=233 Identities=14% Similarity=0.110 Sum_probs=160.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl~ 142 (341)
+||||||+|+||.+|+++|+++|+ +|++|||++++++.+.+ .|. ...++.|+++.+|+||+|+|. .++++|+.
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~----~v~v~dr~~~~~~~l~~-~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~ 78 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGY----LLNVFDLVQSAVDGLVA-AGASAARSARDAVQGADVVISMLPASQHVEGLYL 78 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEECSSHHHHHHHHH-TTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred CEEEEeeehHHHHHHHHHHHhCCC----eEEEEcCCHHHHHHHHH-cCCEEcCCHHHHHhcCCceeecCCchHHHHHHHh
Confidence 589999999999999999999995 99999999999999988 488 888999999999999999984 67889986
Q ss_pred H---hhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEEE-cCCchhhhcCc-eEEEEeCCCCCccH
Q psy316 143 G---LVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKG-ITGMCHDVHLDKES 214 (341)
Q Consensus 143 ~---i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g-~~~l~~~~~~~~~~ 214 (341)
. + .+.+ +++++||+++ .++++. +.+++.. .+.. ++.+ +...|.....| .++++.|+ +
T Consensus 79 ~~~g~-~~~~--~~g~iiId~s-T~~p~~~~~~a~~~~~-----~G~~-~lDaPVsGg~~~A~~G~L~imvGG~---~-- 143 (300)
T 3obb_A 79 DDDGL-LAHI--APGTLVLECS-TIAPTSARKIHAAARE-----RGLA-MLDAPVSGGTAGAAAGTLTFMVGGD---A-- 143 (300)
T ss_dssp SSSSS-TTSC--CC-CEEEECS-CCCHHHHHHHHHHHHT-----TTCE-EEECCEESCHHHHHHTCEEEEEESC---H--
T ss_pred chhhh-hhcC--CCCCEEEECC-CCCHHHHHHHHHHHHH-----cCCE-EEecCCCCCHHHHHhCCEEEEEeCC---H--
Confidence 5 4 5556 7899999884 456543 3444432 2333 3332 11233333445 56777775 4
Q ss_pred HHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 215 EHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
+.++.++++|+.+|..+ ++++..-...+.++. +.+++..+.++.|+ +.+.|++++...+++..+..++..+-..
T Consensus 144 ~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~--N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~ 221 (300)
T 3obb_A 144 EALEKARPLFEAMGRNIFHAGPDGAGQVAKVCN--NQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVY 221 (300)
T ss_dssp HHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhh
Confidence 88999999999999864 567654445555433 45555556666665 5699999999999998876665443322
Q ss_pred hhhhccccCCCChHHHHHhcCCCchHHHHHHHHH
Q psy316 291 DLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL 324 (341)
Q Consensus 291 ~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l 324 (341)
.+. .......+.....+|+++....++.+
T Consensus 222 -~p~----~~~~~~~~~~~~~~~~f~~~l~~KDl 250 (300)
T 3obb_A 222 -NPW----PGVMENAPASRDYSGGFMAQLMAKDL 250 (300)
T ss_dssp -CCS----TTTSTTSGGGGTTCSSSBHHHHHHHH
T ss_pred -ccc----cchhhhccccccCCccchHHHHHHHH
Confidence 000 00111233445566766665555544
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=182.25 Aligned_cols=242 Identities=17% Similarity=0.236 Sum_probs=170.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~v 140 (341)
|+|||+|||+|+||..++..|.++|+ +|++|+|++++++.+.+. |+ ...++.+++.++|+||+||| +.+++.+
T Consensus 4 M~m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~ 78 (299)
T 1vpd_A 4 MTMKVGFIGLGIMGKPMSKNLLKAGY----SLVVSDRNPEAIADVIAA-GAETASTAKAIAEQCDVIITMLPNSPHVKEV 78 (299)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHT-TCEECSSHHHHHHHCSEEEECCSSHHHHHHH
T ss_pred ccceEEEECchHHHHHHHHHHHhCCC----EEEEEeCCHHHHHHHHHC-CCeecCCHHHHHhCCCEEEEECCCHHHHHHH
Confidence 67899999999999999999999984 899999999999888774 77 67788888999999999999 7788999
Q ss_pred H---HHhhhcccccCCCcEEEEecCCCC--HHHHHHhccccCCCCCCCCeEEEE--cCCchhhhcCceEEEEeCCCCCcc
Q psy316 141 I---QGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLSVLVPNPNDAPTIIRV--MPNTAMKYGKGITGMCHDVHLDKE 213 (341)
Q Consensus 141 l---~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~~~~~~~~~~~~vvr~--mpn~p~~v~~g~~~l~~~~~~~~~ 213 (341)
+ +++ .+.+ +++++||+++++.+ .+.+.+.++. .+.. ++.. +++.+.....+.++++.+ ++
T Consensus 79 ~~~~~~l-~~~l--~~~~~vv~~s~~~~~~~~~l~~~~~~-----~g~~-~~~~pv~~~~~~~~~~~~~~~~~~---~~- 145 (299)
T 1vpd_A 79 ALGENGI-IEGA--KPGTVLIDMSSIAPLASREISDALKA-----KGVE-MLDAPVSGGEPKAIDGTLSVMVGG---DK- 145 (299)
T ss_dssp HHSTTCH-HHHC--CTTCEEEECSCCCHHHHHHHHHHHHT-----TTCE-EEECCEESHHHHHHHTCEEEEEES---CH-
T ss_pred HhCcchH-hhcC--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCe-EEEecCCCCHhHHhcCCEEEEeCC---CH-
Confidence 8 677 7778 78999999987764 3566666652 2233 3332 444555555556666665 34
Q ss_pred HHHHHHHHHHHHhcCCeEE-cCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIVEI-IPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVH 289 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~~~-v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~ 289 (341)
+..+.++++|+.+|..++ +++.....+..+.. +.+.+.++..+.|+ +.+.|++++++.+++.++..++..+..
T Consensus 146 -~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~--n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~ 222 (299)
T 1vpd_A 146 -AIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLAN--QVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDA 222 (299)
T ss_dssp -HHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHH
T ss_pred -HHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHH
Confidence 788999999999998655 46655555555533 45666677777776 679999999999988877655443321
Q ss_pred hhhhhccccCCCChHHHHHhcCCCchHHHHH-------HHHHHhCCchHHHHHHH
Q psy316 290 KDLLRMDHAAQAHPAVIKDQICSPGGSTIAG-------IHALEKAGVRTPFSSAA 337 (341)
Q Consensus 290 ~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~-------l~~l~~~~~~~~~~~a~ 337 (341)
. .|..+.+. .+||+.+... ++..++.|+..-+.+++
T Consensus 223 ~-----------~~~~l~~~-~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~ 265 (299)
T 1vpd_A 223 K-----------APMVMDRN-FKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAV 265 (299)
T ss_dssp H-----------HHHHHTTC-CCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred h-----------hhHhhcCC-CCCCCChHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 1 34444444 3566544332 33345556555444443
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=181.60 Aligned_cols=241 Identities=14% Similarity=0.187 Sum_probs=173.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.|||+|||+|+||+.+++.|.+.|+ +|++|+|++++++.+.+ .|+ ...++.+++.++|+||+||| +.++++++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~ 104 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGH----TVTVWNRTAEKCDLFIQ-EGARLGRTPAEVVSTCDITFACVSDPKAAKDLV 104 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTC----CEEEECSSGGGGHHHHH-TTCEECSCHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCC----EEEEEeCCHHHHHHHHH-cCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 4789999999999999999999984 89999999999888876 577 66788888999999999999 89999998
Q ss_pred HHhhh---cccccCCCcEEEEecCCCC--HHHHHHhccccCCCCCCCCeEEE-EcCCchhhhcCceEEEE-eCCCCCccH
Q psy316 142 QGLVN---DKVTLNSSRCIISMLVGVD--LETLKKKLSVLVPNPNDAPTIIR-VMPNTAMKYGKGITGMC-HDVHLDKES 214 (341)
Q Consensus 142 ~~i~~---~~l~~~~~~iIVs~~agi~--~~~l~~~l~~~~~~~~~~~~vvr-~mpn~p~~v~~g~~~l~-~~~~~~~~~ 214 (341)
.++ . +.+ .++++||+++++.+ .+.+.+.++. .+.. ++. .+++.+...+.|.+.++ .+ ++
T Consensus 105 ~~~-~~~~~~l--~~~~~vv~~s~~~~~~~~~l~~~~~~-----~~~~-~v~~p~~g~~~~~~~g~~~~~~~g---~~-- 170 (316)
T 2uyy_A 105 LGP-SGVLQGI--RPGKCYVDMSTVDADTVTELAQVIVS-----RGGR-FLEAPVSGNQQLSNDGMLVILAAG---DR-- 170 (316)
T ss_dssp HST-TCGGGGC--CTTCEEEECSCCCHHHHHHHHHHHHH-----TTCE-EEECCEESCHHHHHHTCEEEEEEE---CH--
T ss_pred cCc-hhHhhcC--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCE-EEEcCccCChhHHhhCCEEEEeCC---CH--
Confidence 765 4 566 78899998866432 3445555541 2334 443 34455555566654443 44 24
Q ss_pred HHHHHHHHHHHhcCCeEEc-CCCc-----hhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q psy316 215 EHLNMAIKIMEQGGIVEII-PESM-----MNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLV 288 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~~v-~e~~-----~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~ 288 (341)
+..+.++++|+.+|..+++ ++.. .....++.+ .+++.+.|++.. +.+.|++++++.+++.++..++..+.
T Consensus 171 ~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~---~~~~~~~Ea~~l-a~~~G~~~~~~~~~~~~~~~~s~~~~ 246 (316)
T 2uyy_A 171 GLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQG---SFMATIAEGLTL-AQVTGQSQQTLLDILNQGQLASIFLD 246 (316)
T ss_dssp HHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHTTCCHHHHHHHHHHSTTCCHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHcCCCHHHHHHHHHcCCCCCHHHH
Confidence 7888999999999987654 4422 122222222 356677777776 78999999999999988776665544
Q ss_pred HhhhhhccccCCCChHHHHHhcCCCchHHHH-------HHHHHHhCCchHHHHHHHHh
Q psy316 289 HKDLLRMDHAAQAHPAVIKDQICSPGGSTIA-------GIHALEKAGVRTPFSSAARR 339 (341)
Q Consensus 289 ~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~-------~l~~l~~~~~~~~~~~a~~~ 339 (341)
.. .|..+.+. .+||++++. .++..++.|+...+.+++.+
T Consensus 247 ~~-----------~~~~l~~~-~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~ 292 (316)
T 2uyy_A 247 QK-----------CQNILQGN-FKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANE 292 (316)
T ss_dssp HH-----------HHHHHHTC-CCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred Hh-----------hHHhhcCC-CCCCCcHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 33 35555554 578888877 56667888888877777654
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=175.21 Aligned_cols=240 Identities=12% Similarity=0.104 Sum_probs=162.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~v 140 (341)
+.+||+|||+|+||.+|+++|.++|+ +|++|||++++++.+.+ .|+ ...++.++++++|+||+|||+. +++++
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v 82 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGK----RVAIWNRSPGKAAALVA-AGAHLCESVKAALSASPATIFVLLDNHATHEV 82 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSHHHHHHHHH-HTCEECSSHHHHHHHSSEEEECCSSHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-CCCeecCCHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 56799999999999999999999995 99999999999998877 477 7788999999999999999954 68888
Q ss_pred HH--HhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEE--cCCchhhhcCceEEEEeCCCCCccH
Q psy316 141 IQ--GLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRV--MPNTAMKYGKGITGMCHDVHLDKES 214 (341)
Q Consensus 141 l~--~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~--mpn~p~~v~~g~~~l~~~~~~~~~~ 214 (341)
+. .+ .+ + .++++||++++..+. ..+.+.+.. .+.. ++.. +...|.....+.++++.++ +
T Consensus 83 ~~~~~l-~~-~--~~g~ivid~st~~~~~~~~l~~~~~~-----~g~~-~vdapv~g~~~~~~~~~~~i~~gg~---~-- 147 (306)
T 3l6d_A 83 LGMPGV-AR-A--LAHRTIVDYTTNAQDEGLALQGLVNQ-----AGGH-YVKGMIVAYPRNVGHRESHSIHTGD---R-- 147 (306)
T ss_dssp HTSTTH-HH-H--TTTCEEEECCCCCTTHHHHHHHHHHH-----TTCE-EEEEEEESCGGGTTCTTCEEEEEEC---H--
T ss_pred hcccch-hh-c--cCCCEEEECCCCCHHHHHHHHHHHHH-----cCCe-EEecccccCcccccCCceEEEEcCC---H--
Confidence 86 56 55 4 588899988554332 344444431 2334 4443 1112222222456666664 4
Q ss_pred HHHHHHHHHHHhcCC-eEEc--CCC-chhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHH-HHHH
Q psy316 215 EHLNMAIKIMEQGGI-VEII--PES-MMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLK-GSGQ 286 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~-~~~v--~e~-~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~-gs~~ 286 (341)
+.++.++++|+.+|. ++++ +++ .-..... .+++..+.++.|+ +.+.|++++++.+++.++.. +...
T Consensus 148 ~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k------~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~ 221 (306)
T 3l6d_A 148 EAFEQHRALLEGLAGHTVFLPWDEALAFATVLH------AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVAD 221 (306)
T ss_dssp HHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCCccHHHHHH------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccH
Confidence 889999999999954 5667 542 1111111 2233334444443 57899999999999998864 5556
Q ss_pred HHHhhhhhccccCCCChHHHHHhcCCCchHHHH--------HHHHHHhCCchHHHHHHHHh
Q psy316 287 LVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIA--------GIHALEKAGVRTPFSSAARR 339 (341)
Q Consensus 287 l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~--------~l~~l~~~~~~~~~~~a~~~ 339 (341)
++.. ....+.+..++|+|++.. .++..++.|+...+.+++..
T Consensus 222 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~ 271 (306)
T 3l6d_A 222 ALEE-----------AVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQ 271 (306)
T ss_dssp HHHH-----------HHHHHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHH-----------HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 6644 234566667788765432 34566667776666555543
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=179.44 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=155.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
.|||+|||+|+||+.++..|.++|+ + |++|+|++++++.+.+++|+ ...+..++++++|+||+|||++.+.+++
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~----~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~ 85 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGF----RIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELL 85 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTC----CEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC----eEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHH
Confidence 3689999999999999999999985 6 89999999999888776677 6677888888999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCch-----hhhcCceEEEEeCCCCCccHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTA-----MKYGKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p-----~~v~~g~~~l~~~~~~~~~~~~ 216 (341)
.++ .+.+ +++++||++++|++.+.+++.++ . .. + .+|..| .....+..++..+ .++ +.
T Consensus 86 ~~l-~~~~--~~~~ivv~~s~~~~~~~l~~~~~------~-~~-~--~~~~~~~~g~~~~~~~~~~~~v~~--~~~--~~ 148 (266)
T 3d1l_A 86 QGI-VEGK--REEALMVHTAGSIPMNVWEGHVP------H-YG-V--FYPMQTFSKQREVDFKEIPFFIEA--SST--ED 148 (266)
T ss_dssp HHH-HTTC--CTTCEEEECCTTSCGGGSTTTCS------S-EE-E--EEECCCC---CCCCCTTCCEEEEE--SSH--HH
T ss_pred HHH-Hhhc--CCCcEEEECCCCCchHHHHHHHH------h-cc-C--cCCceecCCCchhhcCCCeEEEec--CCH--HH
Confidence 998 8878 78999999999999877665554 1 11 1 111111 1111222233322 234 78
Q ss_pred HHHHHHHHHhcCC-eEEcCCCc---hhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy316 217 LNMAIKIMEQGGI-VEIIPESM---MNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQL 287 (341)
Q Consensus 217 ~~~v~~ll~~lG~-~~~v~e~~---~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l 287 (341)
.+.++++|+.+|. ++++++.. ++.+++++++++++++.+.+++. .+.|++++.+.+++.+++.++.++
T Consensus 149 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~---~~~Gl~~~~~~~l~~~~~~~~~~~ 220 (266)
T 3d1l_A 149 AAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL---KKYNLPFDVMLPLIDETARKVHEL 220 (266)
T ss_dssp HHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHhc
Confidence 8999999999995 55676553 78899999999988888888864 489999999999999999887654
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=178.93 Aligned_cols=238 Identities=13% Similarity=0.186 Sum_probs=174.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl~ 142 (341)
|||+|||+|+||+.+++.|.+.|+ +|++|+ ++++++.+.+. |+ ...++.+++.++|+||+|||. .++++++.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~~-~~~~~~~~~~~-g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~ 77 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGH----QLHVTT-IGPVADELLSL-GAVNVETARQVTEFADIIFIMVPDTPQVEDVLF 77 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTC----EEEECC-SSCCCHHHHTT-TCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCC----EEEEEc-CHHHHHHHHHc-CCcccCCHHHHHhcCCEEEEECCCHHHHHHHHh
Confidence 699999999999999999999984 999999 98888888764 77 677888889999999999965 56889987
Q ss_pred ---HhhhcccccCCCcEEEEecCCCC--HHHHHHhccccCCCCCCCCeEEEEc--CCc--hhhhcCce-EEEEeCCCCCc
Q psy316 143 ---GLVNDKVTLNSSRCIISMLVGVD--LETLKKKLSVLVPNPNDAPTIIRVM--PNT--AMKYGKGI-TGMCHDVHLDK 212 (341)
Q Consensus 143 ---~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~~~~~~~~~~~~vvr~m--pn~--p~~v~~g~-~~l~~~~~~~~ 212 (341)
++ .+.+ +++++||+++++.+ .+.+.+.++ . .. ++++ |.. +.....|. ++++.+ ++
T Consensus 78 ~~~~l-~~~l--~~~~~vv~~s~~~~~~~~~l~~~~~------~-~g--~~~~~~p~~~~~~~a~~g~~~~~~~~---~~ 142 (295)
T 1yb4_A 78 GEHGC-AKTS--LQGKTIVDMSSISPIETKRFAQRVN------E-MG--ADYLDAPVSGGEIGAREGTLSIMVGG---EQ 142 (295)
T ss_dssp STTSS-TTSC--CTTEEEEECSCCCHHHHHHHHHHHH------T-TT--EEEEECCEESHHHHHHHTCEEEEEES---CH
T ss_pred CchhH-hhcC--CCCCEEEECCCCCHHHHHHHHHHHH------H-cC--CeEEEccCCCCHHHHHcCCeEEEECC---CH
Confidence 77 7777 78999999887743 355666665 1 11 2322 211 11122344 444444 35
Q ss_pred cHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLV 288 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~ 288 (341)
+..+.++++|+.+|..+ ++++........+.. +.+.+.++..+.|+ +.+.|++.+++.+++..+..++.. +
T Consensus 143 --~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~--n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~-~ 217 (295)
T 1yb4_A 143 --KVFDRVKPLFDILGKNITLVGGNGDGQTCKVAN--QIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRI-L 217 (295)
T ss_dssp --HHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHH-H
T ss_pred --HHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHH-H
Confidence 78899999999999864 456655555555443 34556666667776 779999999999888877655433 3
Q ss_pred HhhhhhccccCCCChHHHHHhcCCCchHHHH-------HHHHHHhCCchHHHHHHHHh
Q psy316 289 HKDLLRMDHAAQAHPAVIKDQICSPGGSTIA-------GIHALEKAGVRTPFSSAARR 339 (341)
Q Consensus 289 ~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~-------~l~~l~~~~~~~~~~~a~~~ 339 (341)
.. ++..+.++.++||++|+. +++.+++.|+...+.+++.+
T Consensus 218 ~~-----------~~~~~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~ 264 (295)
T 1yb4_A 218 EV-----------HGERMINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQE 264 (295)
T ss_dssp HH-----------HHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HH-----------hhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 22 456677788899999988 78888999988888877654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=179.12 Aligned_cols=238 Identities=18% Similarity=0.147 Sum_probs=171.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl~ 142 (341)
|||+|||+|+||..+++.|.+ |+ +|++|+|++++++.+.+. |+ ... +.+++.++|+||+|||+. +++++++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~----~V~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~ 74 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RF----PTLVWNRTFEKALRHQEE-FGSEAV-PLERVAEARVIFTCLPTTREVYEVAE 74 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TS----CEEEECSSTHHHHHHHHH-HCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CC----eEEEEeCCHHHHHHHHHC-CCcccC-HHHHHhCCCEEEEeCCChHHHHHHHH
Confidence 689999999999999999999 85 899999999998887763 66 444 677788999999999965 5899998
Q ss_pred HhhhcccccCCCcEEEEecCCCC--HHHHHHhccccCCCCCCCCeEEEEcCCc--hhhhcCce-EEEEeCCCCCccHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVD--LETLKKKLSVLVPNPNDAPTIIRVMPNT--AMKYGKGI-TGMCHDVHLDKESEHL 217 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~~~~~~~~~~~~vvr~mpn~--p~~v~~g~-~~l~~~~~~~~~~~~~ 217 (341)
++ .+.+ +++++||+++++.. .+.+.+.++. .+.. +++. |.. +...+.|. ++++.+ ++ +..
T Consensus 75 ~l-~~~l--~~~~~vv~~s~~~~~~~~~l~~~~~~-----~g~~-~~~~-p~~~~~~~~~~g~~~~~~~~---~~--~~~ 139 (289)
T 2cvz_A 75 AL-YPYL--REGTYWVDATSGEPEASRRLAERLRE-----KGVT-YLDA-PVSGGTSGAEAGTLTVMLGG---PE--EAV 139 (289)
T ss_dssp HH-TTTC--CTTEEEEECSCCCHHHHHHHHHHHHT-----TTEE-EEEC-CEESHHHHHHHTCEEEEEES---CH--HHH
T ss_pred HH-HhhC--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCE-EEEe-cCCCChhHHhhCCeEEEECC---CH--HHH
Confidence 88 8888 78899998765432 3456666652 1234 5554 532 33344454 344443 34 788
Q ss_pred HHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q psy316 218 NMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVHKDLL 293 (341)
Q Consensus 218 ~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~ 293 (341)
+.++++| .+|.. +++++... ...+..+.+++.+.+...+.|+ +.+.|++++++.+++.++..++ .++..
T Consensus 140 ~~~~~ll-~~g~~~~~~~~~~~--~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~~--- 212 (289)
T 2cvz_A 140 ERVRPFL-AYAKKVVHVGPVGA--GHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRS-NATEN--- 212 (289)
T ss_dssp HHHGGGC-TTEEEEEEEESTTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCB-HHHHH---
T ss_pred HHHHHHH-hhcCCeEEcCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCC-HHHHH---
Confidence 8999999 99985 45665433 3333445678888888888887 7799999999999888776655 44433
Q ss_pred hccccCCCCh-HHHHHhcCCCchHHHH-------HHHHHHhCCchHHHHHHHHh
Q psy316 294 RMDHAAQAHP-AVIKDQICSPGGSTIA-------GIHALEKAGVRTPFSSAARR 339 (341)
Q Consensus 294 ~~~~~~~~~p-~~l~~~v~tpgG~t~~-------~l~~l~~~~~~~~~~~a~~~ 339 (341)
..| ..+.+.+ +||++++. .++..++.|+...+.+++.+
T Consensus 213 -------~~~~~~l~~~~-~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~ 258 (289)
T 2cvz_A 213 -------LIPQRVLTRAF-PKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLARE 258 (289)
T ss_dssp -------THHHHTTTSCC-CCSSBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred -------hccchhhcCCC-CCCcChHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 234 4555555 78877763 55677778888888777654
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=176.90 Aligned_cols=242 Identities=16% Similarity=0.188 Sum_probs=167.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
+|||+|||+|+||..+++.|.+.|+ +|++|+|++++++.+.++ |+ ...++.+++.++|+||+||| +.+++.++
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~ 78 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGV----TVYAFDLMEANVAAVVAQ-GAQACENNQKVAAASDIIFTSLPNAGIVETVM 78 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTC----EEEEECSSHHHHHHHHTT-TCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHC-CCeecCCHHHHHhCCCEEEEECCCHHHHHHHH
Confidence 4789999999999999999999984 899999999999888774 77 67788888999999999996 67889998
Q ss_pred H---HhhhcccccCCCcEEEEecCCC--CHHHHHHhccccCCCCCCCCeEEEEcCCchh--hhcCce-EEEEeCCCCCcc
Q psy316 142 Q---GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLSVLVPNPNDAPTIIRVMPNTAM--KYGKGI-TGMCHDVHLDKE 213 (341)
Q Consensus 142 ~---~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~--~v~~g~-~~l~~~~~~~~~ 213 (341)
. ++ .+.+ +++++||+++++. +.+.+.+.++. .+.. ++. .|..+. ....|. ++++.+ ++
T Consensus 79 ~~~~~l-~~~l--~~~~~vv~~~~~~~~~~~~l~~~~~~-----~g~~-~~~-~p~~~~~~~a~~g~~~~~~~g---~~- 144 (301)
T 3cky_A 79 NGPGGV-LSAC--KAGTVIVDMSSVSPSSTLKMAKVAAE-----KGID-YVD-APVSGGTKGAEAGTLTIMVGA---SE- 144 (301)
T ss_dssp HSTTCH-HHHS--CTTCEEEECCCCCHHHHHHHHHHHHH-----TTCE-EEE-CCEESHHHHHHHTCEEEEEES---CH-
T ss_pred cCcchH-hhcC--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCe-EEE-ccCCCCHHHHHcCCeEEEECC---CH-
Confidence 5 77 7778 7899999998887 34667666652 1223 332 232111 122353 555554 35
Q ss_pred HHHHHHHHHHHHhcCCeEE-cCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIVEI-IPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVH 289 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~~~-v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~ 289 (341)
+..+.++++|+.+|..++ +++.....+..+.. +.+.+.+...+.|+ +.+.|++++++.+++.++..++..+..
T Consensus 145 -~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~--N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~ 221 (301)
T 3cky_A 145 -AVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVN--NLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEA 221 (301)
T ss_dssp -HHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHH
T ss_pred -HHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHH
Confidence 788999999999998754 55544444444432 23444444445554 678999999999999888766655543
Q ss_pred hhhhhccccCCCCh-HHHHHhcCCCchHHHH-------HHHHHHhCCchHHHHHHHHh
Q psy316 290 KDLLRMDHAAQAHP-AVIKDQICSPGGSTIA-------GIHALEKAGVRTPFSSAARR 339 (341)
Q Consensus 290 ~~~~~~~~~~~~~p-~~l~~~v~tpgG~t~~-------~l~~l~~~~~~~~~~~a~~~ 339 (341)
. .| ..+.+.+ +||+.+.. .++..++.|+...+.+++.+
T Consensus 222 ~-----------~~~~~l~~~~-~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~ 267 (301)
T 3cky_A 222 K-----------MEKFIMSGDF-AGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQ 267 (301)
T ss_dssp H-----------CCCCCCTCCC-SSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred h-----------hhhhhhcCCC-CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3 22 2333333 56666653 34566667777666666543
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-20 Score=172.11 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=162.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC--hhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS--ERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~--~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+|||+|||+|+||.+|+++|.++|+ .+|++|||+ +++.+.+.+ .|+ ...++.++++++|+||+|||++...++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~---~~V~~~dr~~~~~~~~~~~~-~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~ 99 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGA---IDMAAYDAASAESWRPRAEE-LGVSCKASVAEVAGECDVIFSLVTAQAALEV 99 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSC---CEEEEECSSCHHHHHHHHHH-TTCEECSCHHHHHHHCSEEEECSCTTTHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC---CeEEEEcCCCCHHHHHHHHH-CCCEEeCCHHHHHhcCCEEEEecCchhHHHH
Confidence 4799999999999999999999983 389999997 577777766 588 778889999999999999999888888
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEE--EcCCchhhhcCceEEEEeCCCCCccHH
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIR--VMPNTAMKYGKGITGMCHDVHLDKESE 215 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr--~mpn~p~~v~~g~~~l~~~~~~~~~~~ 215 (341)
+.++ .+.+ +++++||+++ ++.... +.+.+.... .+.. ++. ++.+.+.. ....+++++++. +
T Consensus 100 ~~~l-~~~l--~~~~ivvd~s-t~~~~~~~~~~~~~~~~~---~g~~-~vd~pv~g~~~~~-~g~l~i~vgg~~-----~ 165 (312)
T 3qsg_A 100 AQQA-GPHL--CEGALYADFT-SCSPAVKRAIGDVISRHR---PSAQ-YAAVAVMSAVKPH-GHRVPLVVDGDG-----A 165 (312)
T ss_dssp HHHH-GGGC--CTTCEEEECC-CCCHHHHHHHHHHHHHHC---TTCE-EEEEEECSCSTTT-GGGSEEEEESTT-----H
T ss_pred HHhh-Hhhc--CCCCEEEEcC-CCCHHHHHHHHHHHHhhc---CCCe-EEeccccCCchhh-cCCEEEEecCCh-----H
Confidence 9998 8888 8899999875 445432 233332100 0233 332 23333333 334667777652 4
Q ss_pred HHHHHHHHHHhcCCeEE-cCCCchhHHHHHhcchHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy316 216 HLNMAIKIMEQGGIVEI-IPESMMNSFGAIAGSGCAYLFLVMDAMAD---GAVKQGIPRDMALRIGAQLLKGSGQLVHKD 291 (341)
Q Consensus 216 ~~~~v~~ll~~lG~~~~-v~e~~~d~~~al~g~gpa~~~~~~eal~e---a~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~ 291 (341)
+.++++|+.+|..++ +++ ......++..+.++|++..+..+.| .+.+.|+++ +..+.+..+. ++ ..+..
T Consensus 166 --~~~~~ll~~~g~~~~~~g~-~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~-~~-~~~~~- 238 (312)
T 3qsg_A 166 --RRFQAAFTLYGCRIEVLDG-EVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASF-PE-HHLRD- 238 (312)
T ss_dssp --HHHHHHHHTTTCEEEECCS-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHS-GG-GTHHH-
T ss_pred --HHHHHHHHHhCCCeEEcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcC-Cc-hhHHH-
Confidence 789999999998765 454 3556666666778888666656555 467899998 4666666554 22 11222
Q ss_pred hhhccccCCCChHHHHHhcCCCchHH----HHHHHHHHhCCchHHHHHHHHh
Q psy316 292 LLRMDHAAQAHPAVIKDQICSPGGST----IAGIHALEKAGVRTPFSSAARR 339 (341)
Q Consensus 292 ~~~~~~~~~~~p~~l~~~v~tpgG~t----~~~l~~l~~~~~~~~~~~a~~~ 339 (341)
....+.+..++||+.. ...++..++.|+...+.+++..
T Consensus 239 ----------~~~~~~~~~~~~g~~~~KDl~~~~~~a~~~g~~~pl~~~~~~ 280 (312)
T 3qsg_A 239 ----------LALYLVERNLEHADRRAHELGEVAATLCSVGVEPLVAEAGYR 280 (312)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ----------hhhHhhcCCCCcccchHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 2334455555676663 3344455667777666665543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-20 Score=172.26 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=143.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc------------cChHHHhh---cCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL------------NDNHRIIK---EAE 126 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~------------~s~~e~~~---~aD 126 (341)
|+|||+|||+|+||++++..|.++|+ +|++|+|++++++.+.+. |+ .. .+..++.. ++|
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGN----DVTLIDQWPAHIEAIRKN-GLIADFNGEEVVANLPIFSPEEIDHQNEQVD 76 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHH-CEEEEETTEEEEECCCEECGGGCCTTSCCCS
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC----cEEEEECCHHHHHHHHhC-CEEEEeCCCeeEecceeecchhhcccCCCCC
Confidence 45799999999999999999999984 999999999988877653 43 11 13344444 899
Q ss_pred EEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEE---------EEcCCchhh
Q psy316 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTII---------RVMPNTAMK 196 (341)
Q Consensus 127 vIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vv---------r~mpn~p~~ 196 (341)
+||+|||++.+.++++++ .+.+ +++++||++.+|++. +.+++.++. .+ ++ +.+|+.+..
T Consensus 77 ~vi~~v~~~~~~~v~~~l-~~~l--~~~~~iv~~~~g~~~~~~l~~~~~~-------~~-vi~g~~~~~~~~~~p~~~~~ 145 (316)
T 2ew2_A 77 LIIALTKAQQLDAMFKAI-QPMI--TEKTYVLCLLNGLGHEDVLEKYVPK-------EN-ILVGITMWTAGLEGPGRVKL 145 (316)
T ss_dssp EEEECSCHHHHHHHHHHH-GGGC--CTTCEEEECCSSSCTHHHHTTTSCG-------GG-EEEEEECCCCEEEETTEEEE
T ss_pred EEEEEeccccHHHHHHHH-HHhc--CCCCEEEEecCCCCcHHHHHHHcCC-------cc-EEEEEeeeeeEEcCCCEEEE
Confidence 999999999999999999 9988 889999999999886 667666652 12 32 567877766
Q ss_pred hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCc-------------hhHHHHHhcchHHHHH-------HHH
Q psy316 197 YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESM-------------MNSFGAIAGSGCAYLF-------LVM 256 (341)
Q Consensus 197 v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~-------------~d~~~al~g~gpa~~~-------~~~ 256 (341)
.+.|...+......++ +..+.+.++|+.+|..+++.++. ++.++++.+++|++++ .+.
T Consensus 146 ~~~g~~~i~~~~~~~~--~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~ 223 (316)
T 2ew2_A 146 LGDGEIELENIDPSGK--KFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVK 223 (316)
T ss_dssp CSCCCEEEEESSGGGH--HHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHH
T ss_pred ecCCcEEEeecCCCcc--HHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHH
Confidence 7777666654333344 77889999999999887765553 6788999999888753 233
Q ss_pred HHHHHH---HHHcCCCH
Q psy316 257 DAMADG---AVKQGIPR 270 (341)
Q Consensus 257 eal~ea---~~~~Gl~~ 270 (341)
..+.|. +.+.|++.
T Consensus 224 ~~~~E~~~la~~~G~~~ 240 (316)
T 2ew2_A 224 TLISEFAAVAEKEAIYL 240 (316)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 344443 45789886
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=169.30 Aligned_cols=197 Identities=14% Similarity=0.168 Sum_probs=140.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-ccChHHHhhcCCEEEEeeCh-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAMKP-QYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV~~-~~v~~ 139 (341)
|+|||+|||+|+||++|+++|.++|+ +|++|||++++++.+.+ .|. . ..++.++++++|+||+|||+ ..++.
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~ 80 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGL----STWGADLNPQACANLLA-EGACGAAASAREFAGVVDALVILVVNAAQVRQ 80 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTCSEEESSSTTTTTTCSEEEECCSSHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----eEEEEECCHHHHHHHHH-cCCccccCCHHHHHhcCCEEEEECCCHHHHHH
Confidence 56899999999999999999999995 99999999999998887 477 5 78889999999999999996 57888
Q ss_pred HH---HHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcC--CchhhhcCce-EEEEeCCCC
Q psy316 140 AI---QGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGI-TGMCHDVHL 210 (341)
Q Consensus 140 vl---~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~-~~l~~~~~~ 210 (341)
++ +++ .+.+ +++++||++++ +++. .+.+.+.. .+.. ++. .| ..+.....|. ++++.++
T Consensus 81 v~~~~~~l-~~~l--~~g~ivv~~st-~~~~~~~~~~~~~~~-----~g~~-~~~-~pv~g~~~~a~~g~l~~~~gg~-- 147 (303)
T 3g0o_A 81 VLFGEDGV-AHLM--KPGSAVMVSST-ISSADAQEIAAALTA-----LNLN-MLD-APVSGGAVKAAQGEMTVMASGS-- 147 (303)
T ss_dssp HHC--CCC-GGGS--CTTCEEEECSC-CCHHHHHHHHHHHHT-----TTCE-EEE-CCEESCHHHHHTTCEEEEEECC--
T ss_pred HHhChhhH-HhhC--CCCCEEEecCC-CCHHHHHHHHHHHHH-----cCCe-EEe-CCCCCChhhhhcCCeEEEeCCC--
Confidence 88 778 7888 88999998754 4543 34444441 2233 333 33 2333344554 4555543
Q ss_pred CccHHHHHHHHHHHHhcCCeE-EcCC-CchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHH
Q psy316 211 DKESEHLNMAIKIMEQGGIVE-IIPE-SMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLK 282 (341)
Q Consensus 211 ~~~~~~~~~v~~ll~~lG~~~-~v~e-~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~ 282 (341)
+ +.++.++++|+.+|..+ ++++ ........+.. +.+.+..+..+.|+ +.+.|+++++..+++..+..
T Consensus 148 -~--~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~--N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~ 219 (303)
T 3g0o_A 148 -E--AAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIH--QLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAG 219 (303)
T ss_dssp -H--HHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT
T ss_pred -H--HHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 4 88999999999999864 5654 33334444432 33444444444443 57899999999998877543
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=166.83 Aligned_cols=231 Identities=15% Similarity=0.161 Sum_probs=160.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC--ChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP--SERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r--~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|+||++|+++|.++|+ +|++|+| ++++++.+.+ .|+. .++.+++.++|+||+|||++...+.+.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~----~V~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~~ 74 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGV----EVVTSLEGRSPSTIERART-VGVT-ETSEEDVYSCPVVISAVTPGVALGAAR 74 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC----EEEECCTTCCHHHHHHHHH-HTCE-ECCHHHHHTSSEEEECSCGGGHHHHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCC----eEEEeCCccCHHHHHHHHH-CCCc-CCHHHHHhcCCEEEEECCCHHHHHHHH
Confidence 589999999999999999999985 8999999 7777777665 3555 677888899999999999976555567
Q ss_pred HhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNM 219 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~ 219 (341)
++ .+.+ ++ +||++ ++++. +.+.+.++. .+ . +-..+-..|...+.|..+++.++ . . +.
T Consensus 75 ~~-~~~~--~~--~vi~~-s~~~~~~~~~l~~~~~~-----~g-~-~~~~v~~~~~~~~~g~~~~~~g~---~--~--~~ 134 (264)
T 1i36_A 75 RA-GRHV--RG--IYVDI-NNISPETVRMASSLIEK-----GG-F-VDAAIMGSVRRKGADIRIIASGR---D--A--EE 134 (264)
T ss_dssp HH-HTTC--CS--EEEEC-SCCCHHHHHHHHHHCSS-----SE-E-EEEEECSCHHHHGGGCEEEEEST---T--H--HH
T ss_pred HH-HHhc--Cc--EEEEc-cCCCHHHHHHHHHHHhh-----CC-e-eeeeeeCCccccccCCeEEecCC---c--H--HH
Confidence 77 7777 54 88887 55654 356666662 11 1 21112234555556666555553 2 3 67
Q ss_pred HHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy316 220 AIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRM 295 (341)
Q Consensus 220 v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~ 295 (341)
+++ |+.+|.. ++++++ .....++..+.++|++.++..+.|+ +.+.|++++ +.+++.+++ |+..+. .
T Consensus 135 ~~~-l~~~g~~~~~~~~~-~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~-g~~~~~-~----- 204 (264)
T 1i36_A 135 FMK-LNRYGLNIEVRGRE-PGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTE-GNDFRE-S----- 204 (264)
T ss_dssp HHG-GGGGTCEEEECSSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTS-CSSTHH-H-----
T ss_pred hhh-HHHcCCeeEECCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhc-CccHHH-H-----
Confidence 888 9999986 466754 4555555556678877777777777 789999987 777776654 322221 1
Q ss_pred cccCCCChHHHHHhcCCCchHHHHHH----HHHHhCCchHHHHHHHHh
Q psy316 296 DHAAQAHPAVIKDQICSPGGSTIAGI----HALEKAGVRTPFSSAARR 339 (341)
Q Consensus 296 ~~~~~~~p~~l~~~v~tpgG~t~~~l----~~l~~~~~~~~~~~a~~~ 339 (341)
.+ .+.++.++||+++.+.+ +.+++. +...+.+++.+
T Consensus 205 ------~~-~~~~~~~~~g~~~~~~~~~~~~~a~~~-v~~p~~~~v~~ 244 (264)
T 1i36_A 205 ------AI-SRLKSSCIHARRRYEEMKEVQDMLAEV-IDPVMPTCIIR 244 (264)
T ss_dssp ------HH-HHHHHHHHTHHHHHHHHHHHHHHHHTT-SCCSHHHHHHH
T ss_pred ------HH-HHhcCCCCcchhhHHHHHHHHHHHHHh-cCchHHHHHHH
Confidence 23 35567788998888887 666667 77666666544
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=168.36 Aligned_cols=238 Identities=13% Similarity=0.117 Sum_probs=161.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI- 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl- 141 (341)
|||+|||+|+||.+++++|.++|+ +|++|||++++++.+.+ .|+ ...++.++++++|+||+|||+ .++++++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~ 76 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGF----DVTVWNRNPAKCAPLVA-LGARQASSPAEVCAACDITIAMLADPAAAREVCF 76 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTC----CEEEECSSGGGGHHHHH-HTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-CCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHc
Confidence 689999999999999999999995 99999999999998877 477 778899999999999999996 4899999
Q ss_pred --HHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcC--CchhhhcCce-EEEEeCCCCCcc
Q psy316 142 --QGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGI-TGMCHDVHLDKE 213 (341)
Q Consensus 142 --~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~-~~l~~~~~~~~~ 213 (341)
+++ .+.+ +++++||++++ +++. .+.+.+.. .+.. ++.. | ..|.....|. ++++.++ +
T Consensus 77 ~~~~l-~~~l--~~g~~vv~~st-~~~~~~~~~~~~~~~-----~g~~-~~~~-pv~g~~~~a~~g~l~~~~gg~---~- 141 (287)
T 3pdu_A 77 GANGV-LEGI--GGGRGYIDMST-VDDETSTAIGAAVTA-----RGGR-FLEA-PVSGTKKPAEDGTLIILAAGD---Q- 141 (287)
T ss_dssp STTCG-GGTC--CTTCEEEECSC-CCHHHHHHHHHHHHH-----TTCE-EEEC-CEECCHHHHHHTCEEEEEEEC---H-
T ss_pred Cchhh-hhcc--cCCCEEEECCC-CCHHHHHHHHHHHHH-----cCCE-EEEC-CccCCHHHHhcCCEEEEEeCC---H-
Confidence 778 7778 78999998855 4443 33344431 2223 3332 2 2233334454 4555553 4
Q ss_pred HHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVH 289 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~ 289 (341)
+.++.++++|+.+|..+ ++++........+. .+.+++..+..+.|+ +.+.|+++++..+++..+..++ .++.
T Consensus 142 -~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~ 217 (287)
T 3pdu_A 142 -SLFTDAGPAFAALGKKCLHLGEVGQGARMKLV--VNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMAN-PMFK 217 (287)
T ss_dssp -HHHHHTHHHHHHHEEEEEECSSTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCC-HHHH
T ss_pred -HHHHHHHHHHHHhCCCEEEcCCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccC-hHHH
Confidence 88899999999999864 56654434444443 245555555555554 5689999999999988764333 2332
Q ss_pred hhhhhccccCCCChHHHHHhcCCCchHHHHHHHHH-------HhCCchHHHHHHH
Q psy316 290 KDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHAL-------EKAGVRTPFSSAA 337 (341)
Q Consensus 290 ~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l-------~~~~~~~~~~~a~ 337 (341)
. ....+.+....|++....+.+.+ ++.|+..-+.+++
T Consensus 218 ~-----------~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~ 261 (287)
T 3pdu_A 218 G-----------KGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATA 261 (287)
T ss_dssp H-----------HHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred h-----------hccccccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 2 12234444456776665544443 4455554444444
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=164.66 Aligned_cols=195 Identities=18% Similarity=0.226 Sum_probs=140.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
+|||+|||+|+||.+|+++|.++|+ +|++|||++++++.+.+ .|+ ...++.++++++|+||+||| +.++++++
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~ 95 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGF----KVTVWNRTLSKCDELVE-HGASVCESPAEVIKKCKYTIAMLSDPCAALSVV 95 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSGGGGHHHHH-TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHH-CCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence 3799999999999999999999995 99999999999998886 588 77889999999999999998 46899999
Q ss_pred ---HHhhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEEEcC--CchhhhcCce-EEEEeCCCCCc
Q psy316 142 ---QGLVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGI-TGMCHDVHLDK 212 (341)
Q Consensus 142 ---~~i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~-~~l~~~~~~~~ 212 (341)
.++ .+.+ .++++||+++ ++++.. +.+.+.. .+.. ++. .| ..+.....|. ++++.++ +
T Consensus 96 ~~~~~l-~~~l--~~g~~vv~~s-t~~~~~~~~~~~~~~~-----~g~~-~v~-~pv~g~~~~a~~g~l~i~~gg~---~ 161 (310)
T 3doj_A 96 FDKGGV-LEQI--CEGKGYIDMS-TVDAETSLKINEAITG-----KGGR-FVE-GPVSGSKKPAEDGQLIILAAGD---K 161 (310)
T ss_dssp HSTTCG-GGGC--CTTCEEEECS-CCCHHHHHHHHHHHHH-----TTCE-EEE-CCEECCHHHHHHTCEEEEEEEC---H
T ss_pred hCchhh-hhcc--CCCCEEEECC-CCCHHHHHHHHHHHHH-----cCCE-EEe-CCCCCChhHHhcCCeEEEEcCC---H
Confidence 777 7778 8899999875 455443 3334431 1222 332 22 2222223343 4555553 4
Q ss_pred cHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLL 281 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~ 281 (341)
+.++.++++|+.+|..+ ++++........+.. +.+++..+..+.|+ +.+.|++.++..+++..+.
T Consensus 162 --~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~--N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~ 230 (310)
T 3doj_A 162 --ALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIV--NMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGA 230 (310)
T ss_dssp --HHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHST
T ss_pred --HHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 88999999999999764 566544444444433 44554444455554 5689999999999887643
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-19 Score=168.27 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=135.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----------Cc-cccChHHHhhcCCEE
Q psy316 60 HVPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----------DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 60 ~~~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----------g~-~~~s~~e~~~~aDvI 128 (341)
|--|.|||+|||+|+||++|+.+|.++|+ +|++|+|++++++.++++. ++ .+.++.+ +..+|+|
T Consensus 10 ~~~~~~kI~iIG~G~mG~ala~~L~~~G~----~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvV 84 (335)
T 1z82_A 10 HHHMEMRFFVLGAGSWGTVFAQMLHENGE----EVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDIL 84 (335)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEE
T ss_pred ccccCCcEEEECcCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEE
Confidence 33588899999999999999999999994 9999999999888876531 24 4567777 8899999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcCCchhhhcCce-EEE
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI-TGM 204 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~-~~l 204 (341)
|+|||++++++++.++ .+ ++++||++++|++.+ .+.+.++...+ ... .++.+|+.+..++.|. +.+
T Consensus 85 il~vk~~~~~~v~~~l-~~-----~~~~vv~~~nGi~~~~~~~l~~~~~~~~~---~~~-~~~~~P~~~~~~~~g~~~~~ 154 (335)
T 1z82_A 85 VIAIPVQYIREHLLRL-PV-----KPSMVLNLSKGIEIKTGKRVSEIVEEILG---CPY-AVLSGPSHAEEVAKKLPTAV 154 (335)
T ss_dssp EECSCGGGHHHHHTTC-SS-----CCSEEEECCCCCCTTTCCCHHHHHHHHTC---CCE-EEEESSCCHHHHHTTCCEEE
T ss_pred EEECCHHHHHHHHHHh-Cc-----CCCEEEEEeCCCCCCccCcHHHHHHHHcC---Cce-EEEECCccHHHHhCCCceEE
Confidence 9999999999999887 43 578999999998753 34444332111 123 6789999998877775 444
Q ss_pred EeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchh---------H----HHHHhc--chH----HHHHHHHHHHHHHHHH
Q psy316 205 CHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMN---------S----FGAIAG--SGC----AYLFLVMDAMADGAVK 265 (341)
Q Consensus 205 ~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d---------~----~~al~g--~gp----a~~~~~~eal~ea~~~ 265 (341)
+.+. . + .+.++++|+..|..+++.++... . ..++.+ .++ +++...+..+...+.+
T Consensus 155 ~~g~---~--~-~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a 228 (335)
T 1z82_A 155 TLAG---E--N-SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMF 228 (335)
T ss_dssp EEEE---T--T-HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEe---h--h-HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 4432 2 3 67889999999988777655321 1 111111 122 2333334444445678
Q ss_pred cCCCHHHHHHH
Q psy316 266 QGIPRDMALRI 276 (341)
Q Consensus 266 ~Gl~~~~a~~l 276 (341)
.|++.+++.++
T Consensus 229 ~G~~~~~~~~l 239 (335)
T 1z82_A 229 FGADQKTFMGL 239 (335)
T ss_dssp TTCCHHHHTST
T ss_pred hCCChhhhccc
Confidence 99999877553
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-20 Score=164.30 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=122.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEE-EcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIA-SAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v-~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+|||+|||+|+||++++++|.++|+ +|++ |+|++++++.+.+++|+ ...+..+.+.++|+||+|||++.+.+++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~----~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~~v~ 98 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQI----PAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIADIV 98 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTC----CEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHHHHH
Confidence 4799999999999999999999985 8888 99999999988766676 5556677789999999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCC--------------CHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC-c------
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGV--------------DLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK-G------ 200 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi--------------~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~-g------ 200 (341)
.++ .+ + ++++||++++|+ +.+.+++.++ +.+ +++.|||.+..+.. |
T Consensus 99 ~~l-~~-~---~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~-vv~~~~~~~~~v~~~g~~~~~~ 165 (220)
T 4huj_A 99 TQV-SD-W---GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-------GAK-VVKAFNTLPAAVLAADPDKGTG 165 (220)
T ss_dssp TTC-SC-C---TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-------TCE-EEEESCSSCHHHHTSCSBCSSC
T ss_pred HHh-hc-c---CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-------CCC-EEECCCCCCHHHhhhCcccCCC
Confidence 998 77 7 478999999998 4677888887 467 99999998877654 2
Q ss_pred -eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 201 -ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 201 -~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
..+++.+. ++ +..+.++++|+.+|..++
T Consensus 166 ~~~v~~~g~--~~--~~~~~v~~l~~~~G~~~~ 194 (220)
T 4huj_A 166 SRVLFLSGN--HS--DANRQVAELISSLGFAPV 194 (220)
T ss_dssp EEEEEEEES--CH--HHHHHHHHHHHHTTCEEE
T ss_pred CeeEEEeCC--CH--HHHHHHHHHHHHhCCCeE
Confidence 34444443 25 889999999999998754
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=162.67 Aligned_cols=194 Identities=16% Similarity=0.205 Sum_probs=140.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHHH-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSAI- 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~vl- 141 (341)
|||+|||+|+||.+++++|.++|+ +|++|+|++++++.+.+ .|+ ...++.+++.++|+||+||| +.++++++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~ 76 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC----SVTIWNRSPEKAEELAA-LGAERAATPCEVVESCPVTFAMLADPAAAEEVCF 76 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSGGGGHHHHH-TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHH-CCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHc
Confidence 689999999999999999999995 99999999999998887 488 77889999999999999999 68999999
Q ss_pred --HHhhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEEEcC--CchhhhcCce-EEEEeCCCCCcc
Q psy316 142 --QGLVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGI-TGMCHDVHLDKE 213 (341)
Q Consensus 142 --~~i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~-~~l~~~~~~~~~ 213 (341)
.++ .+.+ +++++||++ +++++.. +.+.+.. .+.. ++. .| ..+.....|. ++++.++ +
T Consensus 77 ~~~~l-~~~l--~~~~~vi~~-st~~~~~~~~~~~~~~~-----~g~~-~~~-~pv~g~~~~a~~g~l~~~~gg~---~- 141 (287)
T 3pef_A 77 GKHGV-LEGI--GEGRGYVDM-STVDPATSQRIGVAVVA-----KGGR-FLE-APVSGSKKPAEDGTLIILAAGD---R- 141 (287)
T ss_dssp STTCH-HHHC--CTTCEEEEC-SCCCHHHHHHHHHHHHH-----TTCE-EEE-CCEECCHHHHHHTCEEEEEEEC---H-
T ss_pred CcchH-hhcC--CCCCEEEeC-CCCCHHHHHHHHHHHHH-----hCCE-EEE-CCCcCCHHHHhcCCEEEEEeCC---H-
Confidence 788 7788 889999988 4555543 3333331 1222 332 23 1222223343 4555553 4
Q ss_pred HHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLL 281 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~ 281 (341)
+.++.++++|+.+|.. +++++........+.. +.+.+..+..+.|+ +.+.|+++++..+++..+.
T Consensus 142 -~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~--N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~ 210 (287)
T 3pef_A 142 -NLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVV--NMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA 210 (287)
T ss_dssp -HHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred -HHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 7889999999999975 4566655555555543 34444444444443 5689999999999888754
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=174.52 Aligned_cols=200 Identities=14% Similarity=0.093 Sum_probs=149.2
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-C---CCc-cccChHHHhhc---CCEEEE
Q psy316 59 HHVPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-P---MDF-ALNDNHRIIKE---AEYVFL 130 (341)
Q Consensus 59 ~~~~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-~---~g~-~~~s~~e~~~~---aDvIil 130 (341)
||--|..+|||||+|+||++|+++|.++|+ +|++|||++++++.+.+ + .|+ .+.++.++++. +|+||+
T Consensus 5 ~~~~~~~~IgvIGlG~MG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil 80 (497)
T 2p4q_A 5 HHHHMSADFGLIGLAVMGQNLILNAADHGF----TVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVML 80 (497)
T ss_dssp ----CCCSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEE
T ss_pred ccccCCCCEEEEeeHHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEE
Confidence 344599999999999999999999999995 99999999999988876 3 367 67788888876 999999
Q ss_pred eeCh-HHHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEEcC--CchhhhcCceEEEE
Q psy316 131 AMKP-QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGITGMC 205 (341)
Q Consensus 131 aV~~-~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~~~l~ 205 (341)
|||+ +.++++++++ .+.+ +++++||++.++.+. ..+.+.+.. .+.. ++. +| +.|.....|.+++.
T Consensus 81 ~Vp~~~~v~~vl~~l-~~~l--~~g~iIId~s~~~~~~~~~l~~~l~~-----~g~~-~v~-~pVsgg~~~a~~G~~im~ 150 (497)
T 2p4q_A 81 LVKAGAPVDALINQI-VPLL--EKGDIIIDGGNSHFPDSNRRYEELKK-----KGIL-FVG-SGVSGGEEGARYGPSLMP 150 (497)
T ss_dssp CCCSSHHHHHHHHHH-GGGC--CTTCEEEECSCCCHHHHHHHHHHHHH-----TTCE-EEE-EEEESHHHHHHHCCEEEE
T ss_pred EcCChHHHHHHHHHH-HHhC--CCCCEEEECCCCChhHHHHHHHHHHH-----cCCc-eeC-CCcccChhHhhcCCeEEe
Confidence 9998 6899999999 9988 889999999877653 345555541 2333 332 34 45555566666666
Q ss_pred eCCCCCccHHHHHHHHHHHHhcCCe-------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHH-cCCCHHHHH
Q psy316 206 HDVHLDKESEHLNMAIKIMEQGGIV-------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVK-QGIPRDMAL 274 (341)
Q Consensus 206 ~~~~~~~~~~~~~~v~~ll~~lG~~-------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~-~Gl~~~~a~ 274 (341)
.++ + +.++.++++|+.+|.. .++++........+.. +.+.+.++..+.|+ +.+ +|++.+++.
T Consensus 151 gg~---~--e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~--N~~~~~~~~~laEa~~l~~~~lGl~~~~~~ 223 (497)
T 2p4q_A 151 GGS---E--EAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVH--NGIEYGDMQLICEAYDIMKRLGGFTDKEIS 223 (497)
T ss_dssp EEC---G--GGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred cCC---H--HHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 553 4 7889999999999976 3455544444444432 45667777888887 567 599999999
Q ss_pred HHHHH
Q psy316 275 RIGAQ 279 (341)
Q Consensus 275 ~lv~~ 279 (341)
+++..
T Consensus 224 ~~~~~ 228 (497)
T 2p4q_A 224 DVFAK 228 (497)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88854
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=168.63 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=132.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~vl~ 142 (341)
|||+|||+|+||++++++|.++|+ +|++|+|++++++.+.+ .|+ ...++.+++.++|+||+||| ++++++++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~ 75 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGY----PLIIYDVFPDACKEFQD-AGEQVVSSPADVAEKADRIITMLPTSINAIEAYS 75 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTC----CEEEECSSTHHHHHHHT-TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHh
Confidence 589999999999999999999984 89999999999988877 487 67788888999999999995 778999987
Q ss_pred Hhh--hcccccCCCcEEEEecCCCCHHHHHH---hccccCCCCCCCCeEEEEcCCchhhhc-----CceEEEEeCCCCCc
Q psy316 143 GLV--NDKVTLNSSRCIISMLVGVDLETLKK---KLSVLVPNPNDAPTIIRVMPNTAMKYG-----KGITGMCHDVHLDK 212 (341)
Q Consensus 143 ~i~--~~~l~~~~~~iIVs~~agi~~~~l~~---~l~~~~~~~~~~~~vvr~mpn~p~~v~-----~g~~~l~~~~~~~~ 212 (341)
++. .+.+ +++++||+ +++++.+.+++ .++. .+ . .+|+.|...+ .|...++.+. ++
T Consensus 76 ~~~~~~~~l--~~~~~vv~-~s~~~~~~~~~~~~~~~~-----~g-~----~~~~~p~~~g~~~a~~~~~~~~~~~--~~ 140 (296)
T 2gf2_A 76 GANGILKKV--KKGSLLID-SSTIDPAVSKELAKEVEK-----MG-A----VFMDAPVSGGVGAARSGNLTFMVGG--VE 140 (296)
T ss_dssp STTSGGGTC--CTTCEEEE-CSCCCHHHHHHHHHHHHH-----TT-C----EEEECCEESHHHHHHHTCEEEEEES--CG
T ss_pred CchhHHhcC--CCCCEEEE-CCCCCHHHHHHHHHHHHH-----cC-C----EEEEcCCCCChhHHhcCcEEEEeCC--CH
Confidence 640 3456 68889999 78888866553 3331 11 1 2233343322 4444444332 34
Q ss_pred cHHHHHHHHHHHHhcCCeEE-cCCCchhHHHHHhcchHHHH----HHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIVEI-IPESMMNSFGAIAGSGCAYL----FLVMDAMADGAVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~~~-v~e~~~d~~~al~g~gpa~~----~~~~eal~ea~~~~Gl~~~~a~~lv~~ 279 (341)
+..+.++++|+.+|..++ ++.........+.. +.+. ..+.|++. .+.+.|++++++.+++..
T Consensus 141 --~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~--n~~~~~~~~~~~Ea~~-~~~~~G~~~~~~~~~~~~ 207 (296)
T 2gf2_A 141 --DEFAAAQELLGCMGSNVVYCGAVGTGQAAKICN--NMLLAISMIGTAEAMN-LGIRLGLDPKLLAKILNM 207 (296)
T ss_dssp --GGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHh
Confidence 788999999999998654 44322222222221 1122 24455554 577999999999988776
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=169.16 Aligned_cols=198 Identities=11% Similarity=0.134 Sum_probs=142.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhc-----C-CCCCCeEEEEcCChhhhhhcCcCCCc-ccc-------------ChHHHh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRT-----G-LCIPAQIIASAPSERFKLHWPEPMDF-ALN-------------DNHRII 122 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~-----G-~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~-------------s~~e~~ 122 (341)
|+|||+|||+|+||++++..|.++ | + +|++|+| +++++.+.++.|+ ... +..+.+
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~----~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 81 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLL----EVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEV 81 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSE----EEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCccccCCCC----CEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCcccc
Confidence 457999999999999999999998 7 5 9999999 7888877652255 221 345567
Q ss_pred hcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEEEcCCchhhh----
Q psy316 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY---- 197 (341)
Q Consensus 123 ~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v---- 197 (341)
..+|+||+|||++++.++++++ .+.+ +++++||++.+|+.. +.+++.++ . .+ +++.+++.++..
T Consensus 82 ~~~D~vil~vk~~~~~~v~~~i-~~~l--~~~~~iv~~~nG~~~~~~l~~~l~------~-~~-v~~g~~~~~a~~~~pg 150 (317)
T 2qyt_A 82 GTVDYILFCTKDYDMERGVAEI-RPMI--GQNTKILPLLNGADIAERMRTYLP------D-TV-VWKGCVYISARKSAPG 150 (317)
T ss_dssp CCEEEEEECCSSSCHHHHHHHH-GGGE--EEEEEEEECSCSSSHHHHHTTTSC------T-TT-BCEEEEEEEEEEEETT
T ss_pred CCCCEEEEecCcccHHHHHHHH-Hhhc--CCCCEEEEccCCCCcHHHHHHHCC------C-Cc-EEEEEEEEEEEEcCCC
Confidence 8999999999999999999999 8888 778899999999987 56777776 2 35 566665544332
Q ss_pred -----cCceEE-EEeC-CCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchHHHHH----
Q psy316 198 -----GKGITG-MCHD-VHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGCAYLF---- 253 (341)
Q Consensus 198 -----~~g~~~-l~~~-~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gpa~~~---- 253 (341)
+.|... +... +..+. +.. .+.++|+..|..+++.++ .++.++++.+++++++.
T Consensus 151 ~~~~~~~g~~~~ig~~~~~~~~--~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~ 227 (317)
T 2qyt_A 151 LITLEADRELFYFGSGLPEQTD--DEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHE 227 (317)
T ss_dssp EEEEEEEEEEEEEECCSSSCCH--HHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCH
T ss_pred EEEEcCCCceEEEcCCCCCCcC--HHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHH
Confidence 334333 2221 22234 666 899999999988777665 67888999999998874
Q ss_pred -HHHHHHHHH---HHHcCCCHH--HHHHHHHH
Q psy316 254 -LVMDAMADG---AVKQGIPRD--MALRIGAQ 279 (341)
Q Consensus 254 -~~~eal~ea---~~~~Gl~~~--~a~~lv~~ 279 (341)
.+...+.|. +.+.|++.+ ...+++..
T Consensus 228 ~~~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~ 259 (317)
T 2qyt_A 228 PELLSLLEEVAELFRAKYGQVPDDVVQQLLDK 259 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 222333332 457898853 44555443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-18 Score=162.93 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=166.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------------Cc-cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------------DF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------------g~-~~~s~~e~~~~aDvIi 129 (341)
+|||+|||+|+||++++..|.++|+ +|++|+|++++++.+++.. ++ .+.++.++++++|+||
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~----~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVi 104 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQ----KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDIL 104 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTC----CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEE
Confidence 4799999999999999999999994 9999999998887765421 13 3467788899999999
Q ss_pred EeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH------HHHHhccccCCCCCCCCeEEEEcCCchhhhcCce-E
Q psy316 130 LAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE------TLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI-T 202 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~------~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~-~ 202 (341)
+|||++.++++++++ .+++ +++++||++++|+..+ .+++.++ . .++.+...|+...++..+. +
T Consensus 105 laVp~~~~~~vl~~i-~~~l--~~~~ivvs~~kGi~~~t~~~se~i~~~l~------~-~~~~vlsgP~~a~ev~~g~pt 174 (356)
T 3k96_A 105 IVVPSFAFHEVITRM-KPLI--DAKTRIAWGTKGLAKGSRLLHEVVATELG------Q-VPMAVISGPSLATEVAANLPT 174 (356)
T ss_dssp ECCCHHHHHHHHHHH-GGGC--CTTCEEEECCCSCBTTTBCHHHHHHHHHC------S-CCEEEEESSCCHHHHHTTCCE
T ss_pred ECCCHHHHHHHHHHH-HHhc--CCCCEEEEEeCCCCcCccCHHHHHHHHcC------C-CCEEEEECccHHHHHHcCCCe
Confidence 999999999999999 9999 8899999999999874 4666666 2 2325678899888776653 3
Q ss_pred EEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchh--------HHHHHh-c-------chHHHHHHHHHHHHHH---H
Q psy316 203 GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMN--------SFGAIA-G-------SGCAYLFLVMDAMADG---A 263 (341)
Q Consensus 203 ~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d--------~~~al~-g-------~gpa~~~~~~eal~ea---~ 263 (341)
.++.+. .+. +..+.++++|+..|..++++++... .+.++. | ..+++.+.+..++.|. +
T Consensus 175 ~~via~-~~~--~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~ 251 (356)
T 3k96_A 175 AVSLAS-NNS--QFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLV 251 (356)
T ss_dssp EEEEEE-SCH--HHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEec-CCH--HHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Confidence 222221 234 7888999999999988877655322 111211 1 1234445555555554 5
Q ss_pred HHcCCCHHHHHH------HHHHHHHH--H-----HHHHHhhhhhccccCCCChHHHHHhc-CCC-chHHHHHHHHH-HhC
Q psy316 264 VKQGIPRDMALR------IGAQLLKG--S-----GQLVHKDLLRMDHAAQAHPAVIKDQI-CSP-GGSTIAGIHAL-EKA 327 (341)
Q Consensus 264 ~~~Gl~~~~a~~------lv~~~~~g--s-----~~l~~~~~~~~~~~~~~~p~~l~~~v-~tp-gG~t~~~l~~l-~~~ 327 (341)
.+.|.+++++.. ++.. +.+ + ..++- .|.++++..+.. .+. |=.|.+.+..| ++.
T Consensus 252 ~a~G~~~~t~~gl~g~gDl~~t-c~s~~sRN~~~G~~l~---------~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~ 321 (356)
T 3k96_A 252 SVFGGKQETLTGLAGLGDLVLT-CTDNQSRNRRFGLALG---------EGVDKKEAQQAIGQAIEGLYNTDQVHALAQKH 321 (356)
T ss_dssp HHTTCCHHHHTSTTTHHHHHHH-HHCTTCHHHHHHHHHH---------HTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHT
T ss_pred HHhCCChHhhcccchhhHHHHh-ccCCCCccHHHHHHHH---------CCCCHHHHHHHcCCccchHHHHHHHHHHHHHc
Confidence 689999998763 2221 111 0 11121 356777655443 233 33344444444 446
Q ss_pred CchHHHHHHHH
Q psy316 328 GVRTPFSSAAR 338 (341)
Q Consensus 328 ~~~~~~~~a~~ 338 (341)
++.--+.+++.
T Consensus 322 ~v~~Pi~~~v~ 332 (356)
T 3k96_A 322 AIEMPLTFQVH 332 (356)
T ss_dssp TCCCHHHHHHH
T ss_pred CCCCcHHHHHH
Confidence 77666666554
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=164.76 Aligned_cols=195 Identities=11% Similarity=0.122 Sum_probs=139.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~v 140 (341)
..|||+|||+|+||..|+++|.++|+ +|++|||++++++.+.+. |+ ...++.++++++|+||+||| +..++++
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~----~V~~~dr~~~~~~~l~~~-g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v 104 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGY----ALQVWNRTPARAASLAAL-GATIHEQARAAARDADIVVSMLENGAVVQDV 104 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTC----EEEEECSCHHHHHHHHTT-TCEEESSHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCC----eEEEEcCCHHHHHHHHHC-CCEeeCCHHHHHhcCCEEEEECCCHHHHHHH
Confidence 45799999999999999999999995 999999999999998874 88 77899999999999999999 5788999
Q ss_pred HH--HhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcCC--chhhhcCce-EEEEeCCCCCc
Q psy316 141 IQ--GLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMPN--TAMKYGKGI-TGMCHDVHLDK 212 (341)
Q Consensus 141 l~--~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mpn--~p~~v~~g~-~~l~~~~~~~~ 212 (341)
+. ++ .+.+ .++++||++++ +++. .+.+.+.. .+.. ++.. |- .+.....|. ++++.++ +
T Consensus 105 ~~~~~~-~~~l--~~~~~vi~~st-~~~~~~~~~~~~~~~-----~g~~-~~~~-pv~g~~~~a~~g~l~i~~gg~---~ 170 (320)
T 4dll_A 105 LFAQGV-AAAM--KPGSLFLDMAS-ITPREARDHAARLGA-----LGIA-HLDT-PVSGGTVGAEQGTLVIMAGGK---P 170 (320)
T ss_dssp HTTTCH-HHHC--CTTCEEEECSC-CCHHHHHHHHHHHHH-----TTCE-EEEC-CEECHHHHHHHTCEEEEEESC---H
T ss_pred HcchhH-HhhC--CCCCEEEecCC-CCHHHHHHHHHHHHH-----cCCE-EEeC-CCcCCHhHHhcCCeeEEeCCC---H
Confidence 87 77 7777 78999998854 4443 33343431 1223 3321 21 122222343 5555553 4
Q ss_pred cHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHH
Q psy316 213 ESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQLL 281 (341)
Q Consensus 213 ~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~ 281 (341)
+.++.++++|+.+ .. +++++......+.+.. +.+.+..+..+.|+ +.+.|++.++..+++..+.
T Consensus 171 --~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~--N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~ 238 (320)
T 4dll_A 171 --ADFERSLPLLKVF-GRATHVGPHGSGQLTKLAN--QMIVGITIGAVAEALLFATKGGADMAKVKEAITGGF 238 (320)
T ss_dssp --HHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTST
T ss_pred --HHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccc
Confidence 8889999999999 54 4565544444444433 44555555555554 5689999999999887664
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=172.03 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=148.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc-cccChHHHhhc---CCEEEEeeCh-H
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF-ALNDNHRIIKE---AEYVFLAMKP-Q 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~-~~~s~~e~~~~---aDvIilaV~~-~ 135 (341)
+++|+|||+|+||++|+++|.++|+ +|++|+|++++++.+.++. |+ .+.++.++++. +|+||+|||+ +
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~----~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~ 90 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGY----TVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGA 90 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTC----CEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSS
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHH
Confidence 5789999999999999999999995 8999999999988887643 67 67788888876 9999999998 6
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEEcCC--chhhhcCceEEEEeCCCCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRVMPN--TAMKYGKGITGMCHDVHLD 211 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~mpn--~p~~v~~g~~~l~~~~~~~ 211 (341)
.++++++++ .+.+ +++++||++.++... ..+.+.+.. .+.. ++. +|. .|.....|.++++.++
T Consensus 91 ~v~~vl~~l-~~~l--~~g~iIId~s~g~~~~t~~l~~~l~~-----~g~~-~v~-~pv~gg~~~a~~g~~i~~gg~--- 157 (480)
T 2zyd_A 91 GTDAAIDSL-KPYL--DKGDIIIDGGNTFFQDTIRRNRELSA-----EGFN-FIG-TGVSGGEEGALKGPSIMPGGQ--- 157 (480)
T ss_dssp HHHHHHHHH-GGGC--CTTCEEEECSCCCHHHHHHHHHHHHH-----TTCE-EEE-EEEESHHHHHHHCCEEEEESC---
T ss_pred HHHHHHHHH-Hhhc--CCCCEEEECCCCCHHHHHHHHHHHHH-----CCCC-eeC-CccccCHhHHhcCCeEEecCC---
Confidence 899999999 9988 889999999888754 445555542 2233 332 343 3444455666665553
Q ss_pred ccHHHHHHHHHHHHhcCCe--------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIV--------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVK-QGIPRDMALRIGAQ 279 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~--------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~-~Gl~~~~a~~lv~~ 279 (341)
+ +..+.++++|+.+|.. .++++........+.. +.+.+.++.++.|+ +.+ .|++++++.+++..
T Consensus 158 ~--~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~--N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~ 233 (480)
T 2zyd_A 158 K--EAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVH--NGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTE 233 (480)
T ss_dssp H--HHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5 8899999999999975 3456655555555543 45566777788887 567 69999999988854
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-18 Score=158.34 Aligned_cols=194 Identities=15% Similarity=0.112 Sum_probs=138.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~v 140 (341)
|+|||+|||+|+||..|+++|.++|+ +|++|||++++++.+.+ .|+ ...+++++++ +|+||+||| +.+++++
T Consensus 14 ~~~~I~vIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v 87 (296)
T 3qha_A 14 EQLKLGYIGLGNMGAPMATRMTEWPG----GVTVYDIRIEAMTPLAE-AGATLADSVADVAA-ADLIHITVLDDAQVREV 87 (296)
T ss_dssp -CCCEEEECCSTTHHHHHHHHTTSTT----CEEEECSSTTTSHHHHH-TTCEECSSHHHHTT-SSEEEECCSSHHHHHHH
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHH-CCCEEcCCHHHHHh-CCEEEEECCChHHHHHH
Confidence 56799999999999999999999995 99999999999998887 488 7788999999 999999999 5789999
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcC--CchhhhcCce-EEEEeCCCCCccH
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMP--NTAMKYGKGI-TGMCHDVHLDKES 214 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mp--n~p~~v~~g~-~~l~~~~~~~~~~ 214 (341)
++++ .+.+ +++++||++++ +++. .+.+.+.. .+.. ++. .| ..+.....|. ++++.++ +
T Consensus 88 ~~~l-~~~l--~~g~ivv~~st-~~~~~~~~~~~~~~~-----~g~~-~~~-~pv~g~~~~a~~g~l~~~~gg~---~-- 151 (296)
T 3qha_A 88 VGEL-AGHA--KPGTVIAIHST-ISDTTAVELARDLKA-----RDIH-IVD-APVSGGAAAAARGELATMVGAD---R-- 151 (296)
T ss_dssp HHHH-HTTC--CTTCEEEECSC-CCHHHHHHHHHHHGG-----GTCE-EEE-CCEESCHHHHHHTCEEEEEECC---H--
T ss_pred HHHH-HHhc--CCCCEEEEeCC-CCHHHHHHHHHHHHH-----cCCE-EEe-CCCcCCHHHHhcCCccEEecCC---H--
Confidence 9998 8888 88999998754 4443 34444431 1222 332 12 1222233443 4555553 4
Q ss_pred HHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHH------HHHHHHH
Q psy316 215 EHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMA------LRIGAQL 280 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a------~~lv~~~ 280 (341)
+.++.++++|+.+|..+ ++++........+. .+.+.+..+..+.|+ +.+.|++.++. .+++..+
T Consensus 152 ~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~ 225 (296)
T 3qha_A 152 EVYERIKPAFKHWAAVVIHAGEPGAGTRMKLA--RNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGG 225 (296)
T ss_dssp HHHHHHHHHHHHHEEEEEEEESTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCeEEcCChhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcC
Confidence 88899999999999854 56554333444443 345555555555554 56899999998 6555543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=153.29 Aligned_cols=170 Identities=13% Similarity=0.153 Sum_probs=136.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-------ccccChHHHhhcCCEEEEeeChHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-------FALNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-------~~~~s~~e~~~~aDvIilaV~~~~ 136 (341)
|||+||| +|+||+++++.|.++|+ +|++++|++++.+.+.++++ +...+..++++++|+||+|+|++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~~~ 76 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH----EIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEH 76 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC----EEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCChhh
Confidence 5899999 99999999999999984 99999999988877655333 223466778889999999999999
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCCC--------------HHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCc--
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGVD--------------LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKG-- 200 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi~--------------~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g-- 200 (341)
+.+++.++ .+.+ + +++|+++++|++ .+.+++.++ +.+ ++++||+.+.....+
T Consensus 77 ~~~~~~~l-~~~~--~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~-------~~~-~v~~~~~~~~~~~~~~~ 144 (212)
T 1jay_A 77 AIDTARDL-KNIL--R-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE-------SEK-VVSALHTIPAARFANLD 144 (212)
T ss_dssp HHHHHHHT-HHHH--T-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT-------CSC-EEECCTTCCHHHHHCTT
T ss_pred HHHHHHHH-HHHc--C-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC-------CCe-EEEEccchHHHHhhCcC
Confidence 99999988 8777 4 889999999887 578888777 367 899998877655433
Q ss_pred ----eEEEEeCCCCCccHHHHHHHHHHHHhc-CCeE-EcCCCchhHHHHHhcchHHHHHHHH
Q psy316 201 ----ITGMCHDVHLDKESEHLNMAIKIMEQG-GIVE-IIPESMMNSFGAIAGSGCAYLFLVM 256 (341)
Q Consensus 201 ----~~~l~~~~~~~~~~~~~~~v~~ll~~l-G~~~-~v~e~~~d~~~al~g~gpa~~~~~~ 256 (341)
.+.+++++ ++ +..+.++++|+.+ |..+ ++++ .+....+.+++|+|++...
T Consensus 145 ~~~~~~~~~~g~--~~--~~~~~v~~l~~~~~G~~~~~~~~--~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 145 EKFDWDVPVCGD--DD--ESKKVVMSLISEIDGLRPLDAGP--LSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp CCCCEEEEEEES--CH--HHHHHHHHHHHHSTTEEEEEEES--GGGHHHHHTHHHHHHHHHH
T ss_pred CCCCccEEEECC--cH--HHHHHHHHHHHHcCCCCceeccc--hhHHHHhcchHHHHHHHHH
Confidence 56677664 35 8889999999999 9864 5565 5777778888898887643
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=154.91 Aligned_cols=154 Identities=11% Similarity=0.155 Sum_probs=118.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh--------------hhhcCcCCCc-cccChHHHhhcCCE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF--------------KLHWPEPMDF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~--------------~~~l~~~~g~-~~~s~~e~~~~aDv 127 (341)
+.+||+|||+|+||++|+++|.++|+ +|++|+|++++ ++.+.++++. ...++.+++++||+
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDv 93 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGH----EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAEL 93 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC----EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCE
Confidence 46899999999999999999999995 99999999987 4555544555 66788899999999
Q ss_pred EEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCC----------------C-HHHHHHhccccCCCCCCCCeEEEEc
Q psy316 128 VFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGV----------------D-LETLKKKLSVLVPNPNDAPTIIRVM 190 (341)
Q Consensus 128 IilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi----------------~-~~~l~~~l~~~~~~~~~~~~vvr~m 190 (341)
||+|||++.+.+++.++..+.+ ++++||++++++ . .+.+++.++ +.+ +++.+
T Consensus 94 Vilavp~~~~~~~~~~i~~~~l---~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-------~~~-vv~~~ 162 (245)
T 3dtt_A 94 VVNATEGASSIAALTAAGAENL---AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-------EAK-VVKTL 162 (245)
T ss_dssp EEECSCGGGHHHHHHHHCHHHH---TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-------TSE-EEECS
T ss_pred EEEccCcHHHHHHHHHhhhhhc---CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-------CCe-EEEee
Confidence 9999999998888877512344 688999998654 2 356777777 467 99999
Q ss_pred CCchhhhcCc--------eEEEEeCCCCCccHHHHHHHHHHHHhcCC-e-EEcCC
Q psy316 191 PNTAMKYGKG--------ITGMCHDVHLDKESEHLNMAIKIMEQGGI-V-EIIPE 235 (341)
Q Consensus 191 pn~p~~v~~g--------~~~l~~~~~~~~~~~~~~~v~~ll~~lG~-~-~~v~e 235 (341)
++.++.+..| .+++++++ ++ +.++.++++|+.+|. . +++++
T Consensus 163 ~~~~a~v~~~~~~a~~g~~~~~v~g~--d~--~~~~~v~~ll~~~g~~~~~~~G~ 213 (245)
T 3dtt_A 163 NTMNASLMVDPGRAAGGDHSVFVSGN--DA--AAKAEVATLLKSLGHQDVIDLGD 213 (245)
T ss_dssp TTSCHHHHHCGGGTGGGCCCEEEECS--CH--HHHHHHHHHHHHTTCCCEEEEES
T ss_pred cccCHHHhcCccccCCCCeeEEEECC--CH--HHHHHHHHHHHHcCCCceeccCc
Confidence 9877655322 23455553 35 889999999999996 3 45654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=153.89 Aligned_cols=193 Identities=11% Similarity=0.016 Sum_probs=143.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----------C--------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----------D--------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----------g--------------~-~~~s~~ 119 (341)
+||+|||+|+||++||..|.++|+ +|++|||++++++.+.+.. | + .+.++.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF----AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLA 80 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHH
Confidence 689999999999999999999995 9999999998877654320 1 2 456777
Q ss_pred HHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+++++||+||+|||++ ...+++.++ .+.+ +++++++|.+++++++.+.+.+. ...+ ++..+|..|...
T Consensus 81 ~~~~~aDlVi~av~~~~~~~~~v~~~l-~~~~--~~~~il~s~tS~~~~~~la~~~~------~~~~-~ig~h~~~p~~~ 150 (283)
T 4e12_A 81 QAVKDADLVIEAVPESLDLKRDIYTKL-GELA--PAKTIFATNSSTLLPSDLVGYTG------RGDK-FLALHFANHVWV 150 (283)
T ss_dssp HHTTTCSEEEECCCSCHHHHHHHHHHH-HHHS--CTTCEEEECCSSSCHHHHHHHHS------CGGG-EEEEEECSSTTT
T ss_pred HHhccCCEEEEeccCcHHHHHHHHHHH-HhhC--CCCcEEEECCCCCCHHHHHhhcC------CCcc-eEEEccCCCccc
Confidence 8889999999999976 777888888 8888 88999999999999998888776 3457 889998878766
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRI 276 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~l 276 (341)
...+ .++++...++ +..+.++++++.+|+.. +++.+....+.. ..+...+.|++.. ..+.|.++++..++
T Consensus 151 ~~lv-evv~~~~t~~--~~~~~~~~l~~~~g~~~v~v~~~~~g~i~n-----r~~~~~~~ea~~l-~~~g~~~~~~id~~ 221 (283)
T 4e12_A 151 NNTA-EVMGTTKTDP--EVYQQVVEFASAIGMVPIELKKEKAGYVLN-----SLLVPLLDAAAEL-LVDGIADPETIDKT 221 (283)
T ss_dssp SCEE-EEEECTTSCH--HHHHHHHHHHHHTTCEEEECSSCCTTTTHH-----HHHHHHHHHHHHH-HHTTSCCHHHHHHH
T ss_pred CceE-EEEeCCCCCH--HHHHHHHHHHHHcCCEEEEEecCCCCEEeh-----HHHHHHHHHHHHH-HHhCCCCHHHHHHH
Confidence 6554 5566666667 89999999999999864 454332222110 1122334444433 34556799887776
Q ss_pred HHHH
Q psy316 277 GAQL 280 (341)
Q Consensus 277 v~~~ 280 (341)
+...
T Consensus 222 ~~~~ 225 (283)
T 4e12_A 222 WRIG 225 (283)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=157.97 Aligned_cols=203 Identities=13% Similarity=0.119 Sum_probs=139.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--C----c-cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--D----F-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--g----~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
|||+|||+|+||++++..|.++|+ +|++|+|++++++.+.... | . ...+..+.+.++|+||+|||++.+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~----~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~ 76 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGH----EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQV 76 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC----CEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhH
Confidence 589999999999999999999984 9999999988777664421 2 1 122335677899999999999999
Q ss_pred HHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHH
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~ 216 (341)
.++++++ .+.+ +++++||++.+|+.. +.+++.++.++....... ..+.+| .+...+.|.+.+...+. ++ +.
T Consensus 77 ~~v~~~l-~~~l--~~~~~vv~~~~g~~~~~~l~~~~~~~~~g~~~~~-~~~~~p-~~~~~~~g~~~i~~~~~-~~--~~ 148 (291)
T 1ks9_A 77 SDAVKSL-ASTL--PVTTPILLIHNGMGTIEELQNIQQPLLMGTTTHA-ARRDGN-VIIHVANGITHIGPARQ-QD--GD 148 (291)
T ss_dssp HHHHHHH-HTTS--CTTSCEEEECSSSCTTGGGTTCCSCEEEEEECCE-EEEETT-EEEEEECCCEEEEESSG-GG--TT
T ss_pred HHHHHHH-HhhC--CCCCEEEEecCCCCcHHHHHHhcCCeEEEEEeEc-cEEcCC-EEEEecccceEEccCCC-Cc--ch
Confidence 9999999 9888 889999999999875 455555552100000012 346677 56666777666654321 23 56
Q ss_pred HHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchHHH-------HHHHHHHHHHHHHHcCCCH--HHHH
Q psy316 217 LNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGCAY-------LFLVMDAMADGAVKQGIPR--DMAL 274 (341)
Q Consensus 217 ~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gpa~-------~~~~~eal~ea~~~~Gl~~--~~a~ 274 (341)
.+.++++|+.+|..+++.++ .++.++++.++.... +...+..+...+.+.|++. +...
T Consensus 149 ~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~ 228 (291)
T 1ks9_A 149 YSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLR 228 (291)
T ss_dssp CTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 67899999999988776555 567888888875332 2222222233356889985 4444
Q ss_pred HHHHH
Q psy316 275 RIGAQ 279 (341)
Q Consensus 275 ~lv~~ 279 (341)
+.+.+
T Consensus 229 ~~~~~ 233 (291)
T 1ks9_A 229 DYVMQ 233 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=156.53 Aligned_cols=166 Identities=15% Similarity=0.175 Sum_probs=124.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---------------cccChHHHhhcCCE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---------------ALNDNHRIIKEAEY 127 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---------------~~~s~~e~~~~aDv 127 (341)
|+|||+|||+|+||++++..|.++|+ +|++|+|++ .+.+++ .|+ .+.+ .+.+..+|+
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~----~V~~~~r~~--~~~i~~-~g~~~~~~~g~~~~~~~~~~~~-~~~~~~~D~ 72 (312)
T 3hn2_A 1 MSLRIAIVGAGALGLYYGALLQRSGE----DVHFLLRRD--YEAIAG-NGLKVFSINGDFTLPHVKGYRA-PEEIGPMDL 72 (312)
T ss_dssp ---CEEEECCSTTHHHHHHHHHHTSC----CEEEECSTT--HHHHHH-TCEEEEETTCCEEESCCCEESC-HHHHCCCSE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----eEEEEEcCc--HHHHHh-CCCEEEcCCCeEEEeeceeecC-HHHcCCCCE
Confidence 67899999999999999999999984 999999986 355543 232 1233 344778999
Q ss_pred EEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhccccCCCCCCCCeEEEEc---------CCchhhh
Q psy316 128 VFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPNDAPTIIRVM---------PNTAMKY 197 (341)
Q Consensus 128 IilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~~~~~~~~~~~~vvr~m---------pn~p~~v 197 (341)
||+|||++++.++++++ ++.+ .++++||++.+|+. .+.+++.++ ..+ +++.+ |+.....
T Consensus 73 vilavk~~~~~~~l~~l-~~~l--~~~~~iv~l~nGi~~~~~l~~~~~-------~~~-v~~~~~~~~a~~~~p~~v~~~ 141 (312)
T 3hn2_A 73 VLVGLKTFANSRYEELI-RPLV--EEGTQILTLQNGLGNEEALATLFG-------AER-IIGGVAFLCSNRGEPGEVHHL 141 (312)
T ss_dssp EEECCCGGGGGGHHHHH-GGGC--CTTCEEEECCSSSSHHHHHHHHTC-------GGG-EEEEEEEEECCBCSSSEEEEC
T ss_pred EEEecCCCCcHHHHHHH-Hhhc--CCCCEEEEecCCCCcHHHHHHHCC-------CCc-EEEEEEEeeeEEcCCcEEEEC
Confidence 99999999999999999 9999 88999999999998 567888887 235 55544 4544444
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCc-------------hhHHHHHhcchH
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESM-------------MNSFGAIAGSGC 249 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~-------------~d~~~al~g~gp 249 (341)
+.|.+.+...+..+. +..+.+.++|+..|..++++++. ++.++++.++..
T Consensus 142 ~~g~~~ig~~~~~~~--~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~ 204 (312)
T 3hn2_A 142 GAGRIILGEFLPRDT--GRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPV 204 (312)
T ss_dssp EEEEEEEEESSCCCS--HHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred CCCeEEEecCCCCcc--HHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCH
Confidence 555555544333334 77888999999999888887764 677788887644
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-17 Score=152.98 Aligned_cols=154 Identities=10% Similarity=0.122 Sum_probs=122.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc----------CCC------------------c-cc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE----------PMD------------------F-AL 115 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~----------~~g------------------~-~~ 115 (341)
+||+|||+|+||.+||..|.++|+ +|++|||++++++.+.+ +.| + .+
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~----~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~ 91 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGH----TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS 91 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe
Confidence 589999999999999999999995 99999999987765311 011 3 35
Q ss_pred cChHHHhhcCCEEEEeeChHH--HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCc
Q psy316 116 NDNHRIIKEAEYVFLAMKPQY--LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNT 193 (341)
Q Consensus 116 ~s~~e~~~~aDvIilaV~~~~--v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~ 193 (341)
.++.+.+++||+||+|||++. ..+++.++ .+.+ +++++|+|.+++++++.+.+.+. ...+ +++.+|+.
T Consensus 92 ~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l-~~~~--~~~~iv~s~ts~i~~~~l~~~~~------~~~~-~~g~h~~~ 161 (302)
T 1f0y_A 92 TDAASVVHSTDLVVEAIVENLKVKNELFKRL-DKFA--AEHTIFASNTSSLQITSIANATT------RQDR-FAGLHFFN 161 (302)
T ss_dssp SCHHHHTTSCSEEEECCCSCHHHHHHHHHHH-TTTS--CTTCEEEECCSSSCHHHHHTTSS------CGGG-EEEEEECS
T ss_pred cCHHHhhcCCCEEEEcCcCcHHHHHHHHHHH-HhhC--CCCeEEEECCCCCCHHHHHHhcC------Cccc-EEEEecCC
Confidence 677778899999999998743 56788888 8888 78899999999999998887776 3457 88999988
Q ss_pred hhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCC
Q psy316 194 AMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPE 235 (341)
Q Consensus 194 p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e 235 (341)
|...+..+. ++.++..++ +..+.+.++++.+|... ++.+
T Consensus 162 P~~~~~~~~-i~~g~~~~~--e~~~~~~~l~~~~G~~~v~~~~ 201 (302)
T 1f0y_A 162 PVPVMKLVE-VIKTPMTSQ--KTFESLVDFSKALGKHPVSCKD 201 (302)
T ss_dssp STTTCCEEE-EECCTTCCH--HHHHHHHHHHHHTTCEEEEECS
T ss_pred CcccCceEE-EeCCCCCCH--HHHHHHHHHHHHcCCceEEecC
Confidence 877666554 566666677 89999999999999864 4443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=163.13 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=144.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---Cc-cccChHHHhhc---CCEEEEeeCh-H
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---DF-ALNDNHRIIKE---AEYVFLAMKP-Q 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---g~-~~~s~~e~~~~---aDvIilaV~~-~ 135 (341)
++||+|||+|+||++|+++|.++|+ +|++|+|++++++.+.+++ |+ .+.++++++.. +|+||+|||+ +
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~ 80 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGY----TVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGA 80 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCC----EEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCch
Confidence 3689999999999999999999995 8999999999988887644 66 67788888876 9999999998 6
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEEcCC--chhhhcCceEEEEeCCCCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRVMPN--TAMKYGKGITGMCHDVHLD 211 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~mpn--~p~~v~~g~~~l~~~~~~~ 211 (341)
.++++++++ .+.+ +++++||++.++... ..+.+.+.. .+.. ++ .+|. .+.....|.+++..+ +
T Consensus 81 ~v~~vl~~l-~~~l--~~g~iiId~s~~~~~~~~~l~~~l~~-----~g~~-~v-~~pv~gg~~~a~~g~~i~~gg---~ 147 (474)
T 2iz1_A 81 ATDATIKSL-LPLL--DIGDILIDGGNTHFPDTMRRNAELAD-----SGIN-FI-GTGVSGGEKGALLGPSMMPGG---Q 147 (474)
T ss_dssp HHHHHHHHH-GGGC--CTTCEEEECSCCCHHHHHHHHHHTTT-----SSCE-EE-EEEECSHHHHHHHCCCEEEEE---C
T ss_pred HHHHHHHHH-HhhC--CCCCEEEECCCCCHHHHHHHHHHHHH-----CCCe-EE-CCCCCCChhhhccCCeEEecC---C
Confidence 899999999 8888 889999999888743 455565652 2223 33 2343 233345566555554 3
Q ss_pred ccHHHHHHHHHHHHhcCCe---------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIV---------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVK-QGIPRDMALRIGA 278 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~---------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~-~Gl~~~~a~~lv~ 278 (341)
+ +..+.++++|+.+|.. .++++........+.. +.+.+.++..+.|+ +.+ .|++.+++.+++.
T Consensus 148 ~--~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~--N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~ 223 (474)
T 2iz1_A 148 K--EAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVH--NGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFE 223 (474)
T ss_dssp H--HHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 5 8889999999999976 2345544444444433 34556666777776 567 7999999888885
Q ss_pred H
Q psy316 279 Q 279 (341)
Q Consensus 279 ~ 279 (341)
.
T Consensus 224 ~ 224 (474)
T 2iz1_A 224 E 224 (474)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-17 Score=157.50 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=120.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCC---CeEEEEcCChh-----hhhhcCcC-------------CCc-cccChHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIP---AQIIASAPSER-----FKLHWPEP-------------MDF-ALNDNHR 120 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~---~~V~v~~r~~e-----~~~~l~~~-------------~g~-~~~s~~e 120 (341)
|+|||+|||+|+||++|+..|.++|..++ ++|++|+|+++ +++.+.+. .++ .+.++.+
T Consensus 20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e 99 (375)
T 1yj8_A 20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS 99 (375)
T ss_dssp SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence 56799999999999999999999881111 48999999987 76655431 134 4567788
Q ss_pred HhhcCCEEEEeeChHHHHHHHHHhhhc----ccccCCCcEEEEecCCCCH-----HHHHHhccccCCCCCCCCeEEEEcC
Q psy316 121 IIKEAEYVFLAMKPQYLDSAIQGLVND----KVTLNSSRCIISMLVGVDL-----ETLKKKLSVLVPNPNDAPTIIRVMP 191 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~v~~vl~~i~~~----~l~~~~~~iIVs~~agi~~-----~~l~~~l~~~~~~~~~~~~vvr~mp 191 (341)
++.++|+||+|||++++++++.++ .+ .+ +++++||++++|++. +.+.+.+....+ . .. .++.+|
T Consensus 100 a~~~aDvVilav~~~~~~~vl~~i-~~~~~~~l--~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~--~-~~-~v~~gp 172 (375)
T 1yj8_A 100 VINDADLLIFIVPCQYLESVLASI-KESESIKI--ASHAKAISLTKGFIVKKNQMKLCSNYISDFLN--I-PC-SALSGA 172 (375)
T ss_dssp HHTTCSEEEECCCHHHHHHHHHHH-TC---CCC--CTTCEEEECCCSCEEETTEEECHHHHHHHHSS--S-CE-EEEECS
T ss_pred HHcCCCEEEEcCCHHHHHHHHHHH-hhhhhccC--CCCCEEEEeCCccccCCccccCHHHHHHHHcC--C-CE-EEEeCC
Confidence 889999999999999999999999 88 88 889999999988765 233333221111 1 13 678899
Q ss_pred CchhhhcCceE-EEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 192 NTAMKYGKGIT-GMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 192 n~p~~v~~g~~-~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
+.+..++.|.. .+..+. .++ +..+.++++|+..|..+++.++
T Consensus 173 ~~a~~v~~g~~~~~~~~~-~~~--~~~~~v~~ll~~~g~~~~~~~d 215 (375)
T 1yj8_A 173 NIAMDVAMENFSEATIGG-NDK--DSLVIWQRVFDLPYFKINCVNE 215 (375)
T ss_dssp CCHHHHHTTCCEEEEEEC-SCH--HHHHHHHHHHCBTTEEEEEESC
T ss_pred chHHHHHhCCCeEEEEec-CCH--HHHHHHHHHhCCCCeEEEEeCC
Confidence 98887766643 222221 234 7788999999999987766444
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=159.47 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=119.1
Q ss_pred CCC-eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------------Cc-cccChHHHhhcCCE
Q psy316 63 MWT-KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 63 m~~-kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------------g~-~~~s~~e~~~~aDv 127 (341)
|+| ||+|||+|+||++|+.+|.++| ++|++|+|++++++.+.+.. ++ .+.++.+++.++|+
T Consensus 13 m~M~kI~iIG~G~mG~~la~~L~~~G----~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDv 88 (366)
T 1evy_A 13 LYLNKAVVFGSGAFGTALAMVLSKKC----REVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEI 88 (366)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHTTTE----EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSS
T ss_pred hccCeEEEECCCHHHHHHHHHHHhCC----CEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCE
Confidence 444 8999999999999999999988 49999999998887765421 23 44677788899999
Q ss_pred EEEeeChHHHHHHHHH----hhhcccccCC-CcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 128 VFLAMKPQYLDSAIQG----LVNDKVTLNS-SRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 128 IilaV~~~~v~~vl~~----i~~~~l~~~~-~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
||+|||++++.+++.+ + .+.+ ++ +++||++++|++.+ .+.+.+....+ .... .++.+|+.+..++.
T Consensus 89 Vilav~~~~~~~v~~~~~~gl-~~~l--~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~--~~~~-~v~~gp~~~~~~~~ 162 (366)
T 1evy_A 89 ILFVIPTQFLRGFFEKSGGNL-IAYA--KEKQVPVLVCTKGIERSTLKFPAEIIGEFLP--SPLL-SVLAGPSFAIEVAT 162 (366)
T ss_dssp EEECCCHHHHHHHHHHHCHHH-HHHH--HHHTCCEEECCCSCCTTTCCCHHHHHTTTSC--GGGE-EEEESSCCHHHHHT
T ss_pred EEECCChHHHHHHHHHhHHHH-HHhc--CccCCEEEEECCcCCCccccCHHHHHHHHCC--CCcE-EEEeCCChHHHHHh
Confidence 9999999999999998 9 8888 77 88999999898764 23333332111 1113 67888998877666
Q ss_pred ce-EEEEeCCCCCccHHHHHHHHHHHHhc--CCeEEcCCC
Q psy316 200 GI-TGMCHDVHLDKESEHLNMAIKIMEQG--GIVEIIPES 236 (341)
Q Consensus 200 g~-~~l~~~~~~~~~~~~~~~v~~ll~~l--G~~~~v~e~ 236 (341)
|. +.+..+. .++ +..+.++++|+.+ |..+++.++
T Consensus 163 g~~~~~~~~~-~~~--~~~~~v~~ll~~~g~g~~~~~~~d 199 (366)
T 1evy_A 163 GVFTCVSIAS-ADI--NVARRLQRIMSTGDRSFVCWATTD 199 (366)
T ss_dssp TCCEEEEEEC-SSH--HHHHHHHHHHSCTTSSEEEEEESC
T ss_pred CCceEEEEec-CCH--HHHHHHHHHhcCCCCeEEEEEcCC
Confidence 64 2223222 234 7788999999999 776655443
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=153.56 Aligned_cols=196 Identities=12% Similarity=0.087 Sum_probs=139.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcC---CEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEA---EYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~a---DvIilaV~~~~v~~ 139 (341)
.|||+|||+|+||..|+++|.++|+ +|++|||++++++.+.+ .|+ .+.++.++++.+ |+||+|||+.++++
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~----~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~ 96 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGH----ECVVYDLNVNAVQALER-EGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDS 96 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHT-TTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCC----EEEEEeCCHHHHHHHHH-CCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHH
Confidence 3799999999999999999999995 99999999999999887 487 778899999988 99999999989999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCCCccHHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHLDKESEH 216 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~~~~~~~ 216 (341)
++.++ .+.+ +++++||++.++.+. ..+.+.+.. .+.. ++.+ +...+.....|.++++.++ + +.
T Consensus 97 vl~~l-~~~l--~~g~iiId~st~~~~~~~~~~~~l~~-----~g~~-~vdapVsGg~~~a~~G~~im~GG~---~--~a 162 (358)
T 4e21_A 97 MLQRM-TPLL--AANDIVIDGGNSHYQDDIRRADQMRA-----QGIT-YVDVGTSGGIFGLERGYCLMIGGE---K--QA 162 (358)
T ss_dssp HHHHH-GGGC--CTTCEEEECSSCCHHHHHHHHHHHHT-----TTCE-EEEEEEECGGGHHHHCCEEEEESC---H--HH
T ss_pred HHHHH-HhhC--CCCCEEEeCCCCChHHHHHHHHHHHH-----CCCE-EEeCCCCCCHHHHhcCCeeeecCC---H--HH
Confidence 99999 8888 889999998665432 233344431 2333 3332 1122333334556666664 4 88
Q ss_pred HHHHHHHHHhcC--------------------C-eEEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHc------
Q psy316 217 LNMAIKIMEQGG--------------------I-VEIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQ------ 266 (341)
Q Consensus 217 ~~~v~~ll~~lG--------------------~-~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~------ 266 (341)
++.++++|+.+| . .+++++..-..++.+.. .++++..+.++.|+ +.+.
T Consensus 163 ~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~--n~l~~~~i~~~aE~~~la~~a~~~~~~ 240 (358)
T 4e21_A 163 VERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVH--NGIEYGLMAAYAEGLNILHHANAGKEG 240 (358)
T ss_dssp HHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTTCC---
T ss_pred HHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999 3 45565543334444332 34444444455553 2344
Q ss_pred ------------------CCCHHHHHHHHHHH
Q psy316 267 ------------------GIPRDMALRIGAQL 280 (341)
Q Consensus 267 ------------------Gl~~~~a~~lv~~~ 280 (341)
|++.++..++...+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g 272 (358)
T 4e21_A 241 QGADAETAPLRNPDFYRYDLDLADITEVWRRG 272 (358)
T ss_dssp -----------CGGGCCCCCCHHHHHHHHTTT
T ss_pred ccccccccccccchhcccCCCHHHHHHHHhCc
Confidence 88988888776543
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-16 Score=148.93 Aligned_cols=190 Identities=13% Similarity=0.099 Sum_probs=129.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcC-CCCCCeEEEEcCCh-------hhhhhcCcCCCcccc-ChHHHhhcCCEEEEeeC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTG-LCIPAQIIASAPSE-------RFKLHWPEPMDFALN-DNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G-~~~~~~V~v~~r~~-------e~~~~l~~~~g~~~~-s~~e~~~~aDvIilaV~ 133 (341)
|.|||+|||+|+||.+|+++|.++| + +|++|||++ +..+.+.+ .|+ .. ++.+++++||+||+|||
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~----~V~~~dr~~~~~~~~~~~~~~~~~-~g~-~~~s~~e~~~~aDvVi~avp 96 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAA----RLAAYDLRFNDPAASGALRARAAE-LGV-EPLDDVAGIACADVVLSLVV 96 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCS----EEEEECGGGGCTTTHHHHHHHHHH-TTC-EEESSGGGGGGCSEEEECCC
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCC----eEEEEeCCCccccchHHHHHHHHH-CCC-CCCCHHHHHhcCCEEEEecC
Confidence 7789999999999999999999998 5 999999997 44555544 355 56 78889999999999999
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEEE-cCC-chhhhcCceEEEEeCC
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIRV-MPN-TAMKYGKGITGMCHDV 208 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr~-mpn-~p~~v~~g~~~l~~~~ 208 (341)
++...+++.++ .+.+ +++++||+++ ++++. .+.+.+.. .+.. ++.. +.+ .+.. ....+++++++
T Consensus 97 ~~~~~~~~~~i-~~~l--~~~~ivv~~s-t~~p~~~~~~~~~l~~-----~g~~-~~d~pv~g~~~a~-~g~l~i~vgg~ 165 (317)
T 4ezb_A 97 GAATKAVAASA-APHL--SDEAVFIDLN-SVGPDTKALAAGAIAT-----GKGS-FVEGAVMARVPPY-AEKVPILVAGR 165 (317)
T ss_dssp GGGHHHHHHHH-GGGC--CTTCEEEECC-SCCHHHHHHHHHHHHT-----SSCE-EEEEEECSCSTTT-GGGSEEEEEST
T ss_pred CHHHHHHHHHH-Hhhc--CCCCEEEECC-CCCHHHHHHHHHHHHH-----cCCe-EEeccCCCCchhh-cCCEEEEEeCC
Confidence 98888888888 8888 8899999885 55544 34444431 1223 3221 111 2222 22356677764
Q ss_pred CCCccHHHHHHHHHHHHhcCCeE-EcCC-CchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHH
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVE-IIPE-SMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~-~v~e-~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~ 279 (341)
. + +.++++|+.+|..+ ++++ ........+.. +.+.+..+..+.|+ +.+.|++.+ ..+.+..
T Consensus 166 ~-----~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~--N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~ 231 (317)
T 4ezb_A 166 R-----A--VEVAERLNALGMNLEAVGETPGQASSLKMIR--SVMIKGVEALLIEALSSAERAGVTER-ILDSVQE 231 (317)
T ss_dssp T-----H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHH
T ss_pred h-----H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHh
Confidence 2 4 78999999999865 5664 34444444433 34555555555554 568999995 4444443
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=150.45 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=118.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCC---CeEEEEcCChh-----hhhhcCcC-------------CCc-cccChHHHh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIP---AQIIASAPSER-----FKLHWPEP-------------MDF-ALNDNHRII 122 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~---~~V~v~~r~~e-----~~~~l~~~-------------~g~-~~~s~~e~~ 122 (341)
|||+|||+|+||++++..|.++|..++ ++|++|+|+++ +.+.+.+. .++ .+.++.+++
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA 88 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence 689999999999999999999882111 48999999987 66655421 123 446777888
Q ss_pred hcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-----HHH----HHhccccCCCCCCCCeEEEEcCCc
Q psy316 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-----ETL----KKKLSVLVPNPNDAPTIIRVMPNT 193 (341)
Q Consensus 123 ~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-----~~l----~~~l~~~~~~~~~~~~vvr~mpn~ 193 (341)
.++|+||+|||++.+.++++++ .+.+ +++++||++++|++. +.+ .+.++ . .. .++.+|+.
T Consensus 89 ~~aD~Vilav~~~~~~~v~~~i-~~~l--~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~------~-~~-~v~~gp~~ 157 (354)
T 1x0v_A 89 EDADILIFVVPHQFIGKICDQL-KGHL--KANATGISLIKGVDEGPNGLKLISEVIGERLG------I-PM-SVLMGANI 157 (354)
T ss_dssp TTCSEEEECCCGGGHHHHHHHH-TTCS--CTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT------C-CE-EEEECSCC
T ss_pred cCCCEEEEeCCHHHHHHHHHHH-HhhC--CCCCEEEEECCccCCCCCccccHHHHHHHHcC------C-CE-EEEECCCc
Confidence 9999999999999999999999 9888 889999999998863 223 33333 1 13 67899999
Q ss_pred hhhhcCce-EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 194 AMKYGKGI-TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 194 p~~v~~g~-~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
+..+..|. +.++.+. .++ +..+.++++|+..|..+++.++
T Consensus 158 a~~v~~g~~~~~~~~~-~~~--~~~~~v~~ll~~~g~~~~~~~d 198 (354)
T 1x0v_A 158 ASEVADEKFCETTIGC-KDP--AQGQLLKELMQTPNFRITVVQE 198 (354)
T ss_dssp HHHHHTTCCEEEEEEC-SSH--HHHHHHHHHHCBTTEEEEEESC
T ss_pred HHHHHhcCCceEEEEE-CCH--HHHHHHHHHhCCCCEEEEEcCC
Confidence 88776664 3333332 334 7788999999999987776554
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=159.65 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=140.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-------c-cccChHHHhhc---CCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-------F-ALNDNHRIIKE---AEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-------~-~~~s~~e~~~~---aDvIilaV~ 133 (341)
|||+|||+|+||++++.+|.++|+ +|++|+|++++++.+.++.| + .+.++++++.. +|+||+|||
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp 77 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGF----KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQ 77 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecC
Confidence 589999999999999999999995 89999999999888776445 5 56788888774 999999999
Q ss_pred h-HHHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEEcCC--chhhhcCceEEEEeCC
Q psy316 134 P-QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRVMPN--TAMKYGKGITGMCHDV 208 (341)
Q Consensus 134 ~-~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~mpn--~p~~v~~g~~~l~~~~ 208 (341)
+ +.++++++++ .+.+ .++++||++.++... ..+.+.++. .+.. ++. +|. .+.....|.+++..+
T Consensus 78 ~~~~v~~vl~~l-~~~l--~~g~iIId~sng~~~~~~~l~~~l~~-----~g~~-~v~-~pv~gg~~~a~~g~~i~~gg- 146 (478)
T 1pgj_A 78 AGAATDSTIEQL-KKVF--EKGDILVDTGNAHFKDQGRRAQQLEA-----AGLR-FLG-MGISGGEEGARKGPAFFPGG- 146 (478)
T ss_dssp CSHHHHHHHHHH-HHHC--CTTCEEEECCCCCHHHHHHHHHHHHT-----TTCE-EEE-EEEESHHHHHHHCCEEEEEE-
T ss_pred ChHHHHHHHHHH-HhhC--CCCCEEEECCCCChHHHHHHHHHHHH-----CCCe-EEE-eeccCCHHHHhcCCeEeccC-
Confidence 8 5899999999 8888 889999999888753 455555652 2223 332 232 233334555555544
Q ss_pred CCCccHHHHHHHHHHHHhcCCe--------EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHH
Q psy316 209 HLDKESEHLNMAIKIMEQGGIV--------EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQGIPRDMALRIG 277 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~--------~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~Gl~~~~a~~lv 277 (341)
++ +..+.++++|+.+|.. .++++........+.. +.+.+.++..+.|+ +.+.|++.+++.+++
T Consensus 147 --~~--~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~--N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~ 220 (478)
T 1pgj_A 147 --TL--SVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYH--NSGEYAILQIWGEVFDILRAMGLNNDEVAAVL 220 (478)
T ss_dssp --CH--HHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred --CH--HHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 24 7889999999999975 3445544444444433 34445555555554 458999999988887
Q ss_pred HH
Q psy316 278 AQ 279 (341)
Q Consensus 278 ~~ 279 (341)
..
T Consensus 221 ~~ 222 (478)
T 1pgj_A 221 ED 222 (478)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=159.52 Aligned_cols=194 Identities=12% Similarity=0.042 Sum_probs=142.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-C---CCc-cccChHHHhh---cCCEEEEeeCh-H
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-P---MDF-ALNDNHRIIK---EAEYVFLAMKP-Q 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-~---~g~-~~~s~~e~~~---~aDvIilaV~~-~ 135 (341)
|||+|||+|+||++|+.+|.++|+ +|++|+|++++++.+.+ + .|+ .+.+++++++ ++|+||+|||+ +
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~----~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~ 78 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGF----VVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQ 78 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChH
Confidence 689999999999999999999995 89999999999888765 2 366 6778888774 89999999998 4
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHHHHhccccCCCCCCCCeEEEEcCC--chhhhcCceEEEEeCCCCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLSVLVPNPNDAPTIIRVMPN--TAMKYGKGITGMCHDVHLD 211 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~~~~~~~~~~~~vvr~mpn--~p~~v~~g~~~l~~~~~~~ 211 (341)
.+++++.++ .+.+ .++++||++.++... ..+.+.+.. .+.. ++ .+|. .+...+.|.+++..++
T Consensus 79 ~v~~vl~~l-~~~l--~~g~iII~~s~~~~~~~~~l~~~l~~-----~g~~-~v-~~pv~g~~~~a~~g~~i~~gg~--- 145 (482)
T 2pgd_A 79 AVDNFIEKL-VPLL--DIGDIIIDGGNSEYRDTMRRCRDLKD-----KGIL-FV-GSGVSGGEDGARYGPSLMPGGN--- 145 (482)
T ss_dssp HHHHHHHHH-HHHC--CTTCEEEECSCCCHHHHHHHHHHHHH-----TTCE-EE-EEEEESHHHHHHHCCEEEEEEC---
T ss_pred HHHHHHHHH-Hhhc--CCCCEEEECCCCCHHHHHHHHHHHHH-----cCCe-Ee-CCCCCCChhhhccCCeEEeCCC---
Confidence 899999999 8888 889999999888764 345555542 2233 33 3343 3444456666655553
Q ss_pred ccHHHHHHHHHHHHhcCCeE--------EcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHHc-CCCHHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIVE--------IIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVKQ-GIPRDMALRIGAQ 279 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~~--------~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~~-Gl~~~~a~~lv~~ 279 (341)
+ +..+.++++|+.+|..+ ++++........+.. +.+.+.++..+.|+ +.+. |++.+++.+++..
T Consensus 146 ~--e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~--N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~ 221 (482)
T 2pgd_A 146 K--EAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVH--NGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEE 221 (482)
T ss_dssp T--TTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 4 67889999999999754 334444444444433 34556666777776 5677 9999998888753
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-16 Score=154.12 Aligned_cols=195 Identities=12% Similarity=0.075 Sum_probs=138.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC--CC--c-cccChHHHhh---cCCEEEEeeCh-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP--MD--F-ALNDNHRIIK---EAEYVFLAMKP- 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~--~g--~-~~~s~~e~~~---~aDvIilaV~~- 134 (341)
+|+|||||+|+||.+|+++|.++|+ +|++|||++++++.+.++ .+ + .+.+++++++ .+|+||+|||+
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~ 79 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGF----VVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAG 79 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCCh
Confidence 3689999999999999999999995 999999999999887653 12 2 3578888876 59999999998
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecCCCCHH--HHHHhccccCCCCCCCCeEEEE-cCCchhhhcCceEEEEeCCCCC
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE--TLKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGITGMCHDVHLD 211 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~--~l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~~~l~~~~~~~ 211 (341)
+.+++++.++ .+.+ .++++||++.++.... .+.+.+.. .+.. ++.+ +...+.....|.+++..++
T Consensus 80 ~~v~~vl~~l-~~~L--~~g~iIId~st~~~~~t~~~~~~l~~-----~Gi~-fvd~pVsGg~~gA~~G~~im~GG~--- 147 (484)
T 4gwg_A 80 QAVDDFIEKL-VPLL--DTGDIIIDGGNSEYRDTTRRCRDLKA-----KGIL-FVGSGVSGGEEGARYGPSLMPGGN--- 147 (484)
T ss_dssp HHHHHHHHHH-GGGC--CTTCEEEECSCCCHHHHHHHHHHHHH-----TTCE-EEEEEEESHHHHHHHCCEEEEEEC---
T ss_pred HHHHHHHHHH-HHhc--CCCCEEEEcCCCCchHHHHHHHHHHh-----hccc-cccCCccCCHHHHhcCCeeecCCC---
Confidence 5899999999 9999 8999999987665432 33333331 2333 3432 1122333334566666653
Q ss_pred ccHHHHHHHHHHHHhcCCeE--------EcCCCchhHHHHHhcchHHHHHHHHHHHHHH---HHH-cCCCHHHHHHHHH
Q psy316 212 KESEHLNMAIKIMEQGGIVE--------IIPESMMNSFGAIAGSGCAYLFLVMDAMADG---AVK-QGIPRDMALRIGA 278 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~~--------~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~~~-~Gl~~~~a~~lv~ 278 (341)
+ +.++.++++|+.+|..+ ++++........+.. +.+.+..+.++.|+ +.+ .|++.++..+++.
T Consensus 148 ~--ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~--N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~ 222 (484)
T 4gwg_A 148 K--EAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVH--NGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFE 222 (484)
T ss_dssp G--GGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4 78999999999998643 445544444455443 34555666666665 346 8999999888764
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-19 Score=156.98 Aligned_cols=146 Identities=13% Similarity=0.185 Sum_probs=115.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.+.|||+|||+|+||++++++|.+.|+ +|++|+|+++ .+.+.. .|+ .. ++.+++..+|+||+|||+++++++
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~----~V~~~~r~~~-~~~~~~-~g~~~~-~~~~~~~~aDvVilav~~~~~~~v 89 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGY----SVVFGSRNPQ-VSSLLP-RGAEVL-CYSEAASRSDVIVLAVHREHYDFL 89 (201)
Confidence 366899999999999999999999884 8999999977 555554 466 44 777888999999999999988888
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCH--------HHHHHhccccCCCCCCCCeEEEEcCCchhhhcC-ce-----EEEEe
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDL--------ETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK-GI-----TGMCH 206 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~--------~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~-g~-----~~l~~ 206 (341)
+ ++ .+. .++++||++++|++. +.+++.++ +.+ ++|.|||+++...+ |. +.++.
T Consensus 90 ~-~l-~~~---~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~-------~~~-vvra~~n~~a~~~~~g~l~g~~~~~~~ 156 (201)
T 2yjz_A 90 A-EL-ADS---LKGRVLIDVSNNQKMNQYPESNAEYLAQLVP-------GAH-VVKAFNTISAWALQSGTLDASRQVFVC 156 (201)
Confidence 7 56 554 468899999999963 56666666 357 99999999988765 54 13444
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCeE
Q psy316 207 DVHLDKESEHLNMAIKIMEQGGIVE 231 (341)
Q Consensus 207 ~~~~~~~~~~~~~v~~ll~~lG~~~ 231 (341)
+. ++ ++++.++++|+.+|...
T Consensus 157 g~--~~--~~~~~v~~ll~~~G~~~ 177 (201)
T 2yjz_A 157 GN--DS--KAKDRVMDIARTLGLTP 177 (201)
Confidence 43 24 78899999999999864
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=149.14 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=120.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC--ChhhhhhcCcCCC-----------c-ccc--ChHHHhhcCCEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP--SERFKLHWPEPMD-----------F-ALN--DNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r--~~e~~~~l~~~~g-----------~-~~~--s~~e~~~~aDvI 128 (341)
|||+|||+|+||++++..|.++|+ +|++|+| ++++++.+.+. + + ... ++.+++.++|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~----~V~~~~r~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~v 75 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGN----EVRIWGTEFDTEILKSISAG-REHPRLGVKLNGVEIFWPEQLEKCLENAEVV 75 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC----EEEEECCGGGHHHHHHHHTT-CCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----eEEEEEccCCHHHHHHHHHh-CcCcccCccccceEEecHHhHHHHHhcCCEE
Confidence 589999999999999999999984 9999999 99888877663 3 1 233 566778899999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCC------CHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCce-
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGV------DLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI- 201 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi------~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~- 201 (341)
|+|||++.+.+++.++ .+ + +++++||++++|+ +.+.+.+.++..++. .... .++.+|+.+...+.|.
T Consensus 76 i~~v~~~~~~~v~~~i-~~-l--~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~-~~~~-~~~~~p~~~~~~~~g~~ 149 (335)
T 1txg_A 76 LLGVSTDGVLPVMSRI-LP-Y--LKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDL-RERT-VAITGPAIAREVAKRMP 149 (335)
T ss_dssp EECSCGGGHHHHHHHH-TT-T--CCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTC-GGGE-EEEESSCCHHHHHTTCC
T ss_pred EEcCChHHHHHHHHHH-hc-C--CCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCC-CCcE-EEEECCCcHHHHHccCC
Confidence 9999999999999999 88 8 8899999999898 346677776631110 0012 5688899887776554
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
+.++.+. .++ +..+.++++|+..|..+++.++
T Consensus 150 ~~~~~~~-~~~--~~~~~~~~ll~~~g~~~~~~~d 181 (335)
T 1txg_A 150 TTVVFSS-PSE--SSANKMKEIFETEYFGVEVTTD 181 (335)
T ss_dssp EEEEEEC-SCH--HHHHHHHHHHCBTTEEEEEESC
T ss_pred cEEEEEe-CCH--HHHHHHHHHhCCCcEEEEecCc
Confidence 3333332 235 7788999999999987666444
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-16 Score=153.36 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=122.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------c-cccChHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------F-ALNDNHR 120 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~-~~~s~~e 120 (341)
+||+|||+|+||.+||..|+++|+ +|++|||++++++.+.+. .| + .+.+. +
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~----~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 80 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGH----QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-H 80 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC----CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-G
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-H
Confidence 589999999999999999999995 999999999987764321 12 1 23444 4
Q ss_pred HhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhc
Q psy316 121 IIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYG 198 (341)
Q Consensus 121 ~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~ 198 (341)
.+++||+||+|||++ ..++++.++ .+.+ +++++|+|.+++++++.+.+.+. ...+ ++..+|..|..+.
T Consensus 81 ~~~~aDlVIeAVpe~~~vk~~v~~~l-~~~~--~~~~IlasntSti~i~~ia~~~~------~p~~-~ig~hf~~Pa~v~ 150 (483)
T 3mog_A 81 ALAAADLVIEAASERLEVKKALFAQL-AEVC--PPQTLLTTNTSSISITAIAAEIK------NPER-VAGLHFFNPAPVM 150 (483)
T ss_dssp GGGGCSEEEECCCCCHHHHHHHHHHH-HHHS--CTTCEEEECCSSSCHHHHTTTSS------SGGG-EEEEEECSSTTTC
T ss_pred HhcCCCEEEEcCCCcHHHHHHHHHHH-HHhh--ccCcEEEecCCCCCHHHHHHHcc------Cccc-eEEeeecChhhhC
Confidence 688999999999975 446788888 8888 88999999999999998887776 3457 8999998887765
Q ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcC
Q psy316 199 KGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIP 234 (341)
Q Consensus 199 ~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~ 234 (341)
. .+.++.+...++ +..+.+.++++.+|+.. ++.
T Consensus 151 ~-Lvevv~g~~Ts~--e~~~~~~~l~~~lGk~~v~v~ 184 (483)
T 3mog_A 151 K-LVEVVSGLATAA--EVVEQLCELTLSWGKQPVRCH 184 (483)
T ss_dssp C-EEEEEECSSCCH--HHHHHHHHHHHHTTCEEEEEE
T ss_pred C-eEEEecCCCCCH--HHHHHHHHHHHHhCCEEEEEe
Confidence 4 556777776777 89999999999999864 454
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=140.02 Aligned_cols=188 Identities=12% Similarity=0.115 Sum_probs=133.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------Cc-cccChHHHhhcCCEEEEeeChH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------DF-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------g~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
--+||+|||+|.||..||..|+ +|+ +|++|||++++++++.+.+ ++ .+.++.+ +++||+||.|+|.+
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~----~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~ 84 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKH----EVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFED 84 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTS----EEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSC
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCC----EEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCC
Confidence 3579999999999999999999 995 9999999999888765521 45 4566665 88999999999964
Q ss_pred -HHHH-HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCcc
Q psy316 136 -YLDS-AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKE 213 (341)
Q Consensus 136 -~v~~-vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~ 213 (341)
+++. ++.++ .+. +++++++.+++++++.+.+.+. ...+ ++..++-.|...+. ...++.+...++
T Consensus 85 ~~vk~~l~~~l-~~~----~~~IlasntSti~~~~~a~~~~------~~~r-~~G~Hf~~Pv~~~~-lveiv~g~~t~~- 150 (293)
T 1zej_A 85 LNTKVEVLREV-ERL----TNAPLCSNTSVISVDDIAERLD------SPSR-FLGVHWMNPPHVMP-LVEIVISRFTDS- 150 (293)
T ss_dssp HHHHHHHHHHH-HTT----CCSCEEECCSSSCHHHHHTTSS------CGGG-EEEEEECSSTTTCC-EEEEEECTTCCH-
T ss_pred HHHHHHHHHHH-hcC----CCCEEEEECCCcCHHHHHHHhh------cccc-eEeEEecCccccCC-EEEEECCCCCCH-
Confidence 4554 44556 432 6778888888899998887665 2345 66666544654433 455667766677
Q ss_pred HHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy316 214 SEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLL 281 (341)
Q Consensus 214 ~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~ 281 (341)
+.++.+.++++.+|+.+ ++++. -.+. ..++..+.|++.- +.+ |+++++..+++..++
T Consensus 151 -~~~~~~~~l~~~lGk~~v~v~d~--fi~N------rll~~~~~EA~~l-~~~-Gv~~e~id~~~~~g~ 208 (293)
T 1zej_A 151 -KTVAFVEGFLRELGKEVVVCKGQ--SLVN------RFNAAVLSEASRM-IEE-GVRAEDVDRVWKHHL 208 (293)
T ss_dssp -HHHHHHHHHHHHTTCEEEEEESS--CHHH------HHHHHHHHHHHHH-HHH-TCCHHHHHHHHHTTH
T ss_pred -HHHHHHHHHHHHcCCeEEEeccc--ccHH------HHHHHHHHHHHHH-HHh-CCCHHHHHHHHHhcC
Confidence 99999999999999864 55543 1111 1223345556553 234 889998888876543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=143.04 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=137.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh--------hcCcCCC-------------c-cccChHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL--------HWPEPMD-------------F-ALNDNHRI 121 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~--------~l~~~~g-------------~-~~~s~~e~ 121 (341)
.+||+|||+|.||..||..|+++|+ +|++||+++++.. .+.++ | + .+.+. +.
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~----~V~l~D~~~e~a~~~i~~~l~~~~~~-G~l~~~~~~~~~~~i~~t~dl-~a 127 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGI----ETFLVVRNEQRCKQELEVMYAREKSF-KRLNDKRIEKINANLKITSDF-HK 127 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHHHHHHHHT-TSCCHHHHHHHHTTEEEESCG-GG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----eEEEEECcHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHhcceEEeCCH-HH
Confidence 3689999999999999999999995 9999999988432 22221 2 2 24455 46
Q ss_pred hhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
+++||+||+|||. ...++++.++ .+.+ +++++|+|.++++++..+.+.+. ...+ ++..+|..|.....
T Consensus 128 l~~aDlVIeAVpe~~~vk~~v~~~l-~~~~--~~~aIlasnTSsl~i~~ia~~~~------~p~r-~iG~HffnPv~~m~ 197 (460)
T 3k6j_A 128 LSNCDLIVESVIEDMKLKKELFANL-ENIC--KSTCIFGTNTSSLDLNEISSVLR------DPSN-LVGIHFFNPANVIR 197 (460)
T ss_dssp CTTCSEEEECCCSCHHHHHHHHHHH-HTTS--CTTCEEEECCSSSCHHHHHTTSS------SGGG-EEEEECCSSTTTCC
T ss_pred HccCCEEEEcCCCCHHHHHHHHHHH-HhhC--CCCCEEEecCCChhHHHHHHhcc------CCcc-eEEEEecchhhhCC
Confidence 8899999999985 3456788888 8888 89999999999999999988776 3457 88999887877654
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~ 278 (341)
. ..++.+...++ +.++.+.++++.+|+.. ++.+. -..+. . ..++.++.|++.. +.+.|+++++..+++.
T Consensus 198 L-vEIv~g~~Ts~--e~~~~~~~l~~~lGk~~v~v~d~-pGfi~--N---ril~~~~~EA~~l-~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 198 L-VEIIYGSHTSS--QAIATAFQACESIKKLPVLVGNC-KSFVF--N---RLLHVYFDQSQKL-MYEYGYLPHQIDKIIT 267 (460)
T ss_dssp E-EEEECCSSCCH--HHHHHHHHHHHHTTCEEEEESSC-CHHHH--H---HHHHHHHHHHHHH-HHTSCCCHHHHHHHHH
T ss_pred E-EEEEeCCCCCH--HHHHHHHHHHHHhCCEEEEEecc-cHHHH--H---HHHHHHHHHHHHH-HHHcCCCHHHHHHHHH
Confidence 3 44566666677 99999999999999975 45532 11110 0 1122234444432 3478999988877765
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-16 Score=145.19 Aligned_cols=169 Identities=19% Similarity=0.220 Sum_probs=122.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--------------cccChHHHhhcCCEE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--------------ALNDNHRIIKEAEYV 128 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--------------~~~s~~e~~~~aDvI 128 (341)
.+|||+|||+|+||++++..|.++|+ +|++| +++++++.++++ |. .+.+. +.+..+|+|
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~----~V~l~-~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 90 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGH----EVILI-ARPQHVQAIEAT-GLRLETQSFDEQVKVSASSDP-SAVQGADLV 90 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTC----EEEEE-CCHHHHHHHHHH-CEEEECSSCEEEECCEEESCG-GGGTTCSEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCC----eEEEE-EcHhHHHHHHhC-CeEEEcCCCcEEEeeeeeCCH-HHcCCCCEE
Confidence 46899999999999999999999994 99999 888888877652 32 23344 346889999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH-HHHHHhcc-ccCCCCCCCCeEEEEcCCchhhhcCceEEEEe
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL-ETLKKKLS-VLVPNPNDAPTIIRVMPNTAMKYGKGITGMCH 206 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~-~~l~~~l~-~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~ 206 (341)
|+|||+++++++++++ ++.+ .++++||++.+|+.. +.+.+.++ ..++...... ..+..|+....++.|...+
T Consensus 91 ilavk~~~~~~~l~~l-~~~l--~~~~~iv~~~nGi~~~~~l~~~~~~~vl~g~~~~~-a~~~gP~~~~~~~~g~~~i-- 164 (318)
T 3hwr_A 91 LFCVKSTDTQSAALAM-KPAL--AKSALVLSLQNGVENADTLRSLLEQEVAAAVVYVA-TEMAGPGHVRHHGRGELVI-- 164 (318)
T ss_dssp EECCCGGGHHHHHHHH-TTTS--CTTCEEEEECSSSSHHHHHHHHCCSEEEEEEEEEE-EEEEETTEEEEEEEEEEEE--
T ss_pred EEEcccccHHHHHHHH-HHhc--CCCCEEEEeCCCCCcHHHHHHHcCCcEEEEEEEEe-EEEcCCeEEEEcCCceEEE--
Confidence 9999999999999999 9999 889999999999997 66777774 1110000001 2345577766666665443
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcchH
Q psy316 207 DVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSGC 249 (341)
Q Consensus 207 ~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~gp 249 (341)
+. . +..+.+.++|+..|..++++++ .++.++++.++..
T Consensus 165 g~---~--~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~ 215 (318)
T 3hwr_A 165 EP---T--SHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPY 215 (318)
T ss_dssp CC---C--TTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred cC---C--HHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCH
Confidence 32 2 4456789999999988777654 2456677776644
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=142.53 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=117.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC--------CC------c-cccChHHHhhcCCE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP--------MD------F-ALNDNHRIIKEAEY 127 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~--------~g------~-~~~s~~e~~~~aDv 127 (341)
|+|||+|||+|+||++++..|.++|+ +|++|+|++. +.+++. +| + .+.+++++.+.+|+
T Consensus 1 M~mkI~IiGaGaiG~~~a~~L~~~g~----~V~~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~Dl 74 (320)
T 3i83_A 1 MSLNILVIGTGAIGSFYGALLAKTGH----CVSVVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDC 74 (320)
T ss_dssp --CEEEEESCCHHHHHHHHHHHHTTC----EEEEECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC----eEEEEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCE
Confidence 67899999999999999999999984 9999999862 433321 12 2 23455555558999
Q ss_pred EEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC-HHHHHHhccccCCCCCCCCeEEEEcCCc------hhhh---
Q psy316 128 VFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPNDAPTIIRVMPNT------AMKY--- 197 (341)
Q Consensus 128 IilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-~~~l~~~l~~~~~~~~~~~~vvr~mpn~------p~~v--- 197 (341)
||+|||++++.++++++ ++.+ .++++||++.+|+. .+.+++.++ . .+ ++...... |..+
T Consensus 75 VilavK~~~~~~~l~~l-~~~l--~~~t~Iv~~~nGi~~~~~l~~~~~------~-~~-vl~g~~~~~a~~~~pg~v~~~ 143 (320)
T 3i83_A 75 TLLCIKVVEGADRVGLL-RDAV--APDTGIVLISNGIDIEPEVAAAFP------D-NE-VISGLAFIGVTRTAPGEIWHQ 143 (320)
T ss_dssp EEECCCCCTTCCHHHHH-TTSC--CTTCEEEEECSSSSCSHHHHHHST------T-SC-EEEEEEEEEEEEEETTEEEEE
T ss_pred EEEecCCCChHHHHHHH-Hhhc--CCCCEEEEeCCCCChHHHHHHHCC------C-Cc-EEEEEEEeceEEcCCCEEEEC
Confidence 99999999999999999 9999 88899999999998 578888887 2 34 44432211 1222
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcc
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGS 247 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~ 247 (341)
+.|.+.+..-+.... +..+.+.++|+..|..++++++ .++.++++.++
T Consensus 144 ~~~~~~ig~~~~~~~--~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~ 204 (320)
T 3i83_A 144 AYGRLMLGNYPGGVS--ERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGG 204 (320)
T ss_dssp EEEEEEEEESSSCCC--HHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEecCCCCcc--HHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCC
Confidence 223333332222234 7788899999999988777654 13456777765
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-15 Score=139.54 Aligned_cols=165 Identities=16% Similarity=0.244 Sum_probs=118.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-------------ccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-------------LNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-------------~~s~~e~~~~aDvIi 129 (341)
.|||+|||+|+||++++..|.++|+ +|++|+|+ ++.+.+++ .|+ . ..+.++ +..+|+||
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~----~V~~~~r~-~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vi 75 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGE----AINVLARG-ATLQALQT-AGLRLTEDGATHTLPVRATHDAAA-LGEQDVVI 75 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTC----CEEEECCH-HHHHHHHH-TCEEEEETTEEEEECCEEESCHHH-HCCCSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC----EEEEEECh-HHHHHHHH-CCCEEecCCCeEEEeeeEECCHHH-cCCCCEEE
Confidence 3789999999999999999999994 99999996 56666654 343 1 234444 68899999
Q ss_pred EeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC--------------------HHHHHHhccccCCCCCCCCeEE--
Q psy316 130 LAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD--------------------LETLKKKLSVLVPNPNDAPTII-- 187 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~--------------------~~~l~~~l~~~~~~~~~~~~vv-- 187 (341)
+|||++++.++++++ .+.+ .++++||++.+|++ .+.+.+.++. .+ ++
T Consensus 76 lavk~~~~~~~~~~l-~~~l--~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~-------~~-v~~g 144 (335)
T 3ghy_A 76 VAVKAPALESVAAGI-APLI--GPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPT-------RH-VLGC 144 (335)
T ss_dssp ECCCHHHHHHHHGGG-SSSC--CTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCG-------GG-EEEE
T ss_pred EeCCchhHHHHHHHH-HhhC--CCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCc-------cc-EEEE
Confidence 999999999999999 9999 88999999999963 2366777762 23 33
Q ss_pred -------EEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcc
Q psy316 188 -------RVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGS 247 (341)
Q Consensus 188 -------r~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~ 247 (341)
+..|+.....+.|.+.+..-+.... +..+.+.++|+..|..++++++ .++.++++.++
T Consensus 145 v~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~--~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~ 222 (335)
T 3ghy_A 145 VVHLTCATVSPGHIRHGNGRRLILGEPAGGAS--PRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGA 222 (335)
T ss_dssp EECCCEEESSTTEEEECSCCEEEEECTTCSCC--HHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCC
T ss_pred EEEEEEEEcCCcEEEECCCCeEEEecCCCCcC--HHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCC
Confidence 2234443344455444432222234 6778899999999988776544 24566677665
Q ss_pred h
Q psy316 248 G 248 (341)
Q Consensus 248 g 248 (341)
.
T Consensus 223 ~ 223 (335)
T 3ghy_A 223 T 223 (335)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=131.92 Aligned_cols=150 Identities=14% Similarity=0.212 Sum_probs=110.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+.|||+|||+|+||+++++.|.+.|+ +|++++|++++++.+.+. |+ .. +..++++++|+||+|+|++.+.+++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~----~V~~~~r~~~~~~~~~~~-g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~ 100 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGF----KVVVGSRNPKRTARLFPS-AAQVT-FQEEAVSSPEVIFVAVFREHYSSLC 100 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTC----CEEEEESSHHHHHHHSBT-TSEEE-EHHHHTTSCSEEEECSCGGGSGGGG
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHc-CCcee-cHHHHHhCCCEEEECCChHHHHHHH
Confidence 34789999999999999999999984 899999999998888774 77 44 7778889999999999998877776
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHH----------HhccccCCCCCCCCeEEEEcCCchhhh-cC----ce-EEEE
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLK----------KKLSVLVPNPNDAPTIIRVMPNTAMKY-GK----GI-TGMC 205 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~----------~~l~~~~~~~~~~~~vvr~mpn~p~~v-~~----g~-~~l~ 205 (341)
. + .+.+ ++++||++++|++.+.++ +.++ +.+ +++.|....... .. |. ..+.
T Consensus 101 ~-l-~~~~---~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-------~~~-vv~~~n~~~~~~~~~~~~~g~~~~~~ 167 (215)
T 2vns_A 101 S-L-SDQL---AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-------TCT-VVKAFNVISAWTLQAGPRDGNRQVPI 167 (215)
T ss_dssp G-G-HHHH---TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-------TSE-EEEECTTBCHHHHHTCSCSSCCEEEE
T ss_pred H-H-HHhc---CCCEEEEeCCCcccccccccccHHHHHHHHCC-------CCe-EEeccccccHhHhcccccCCceeEEE
Confidence 5 6 6655 688999999999876553 4444 356 888873221110 11 21 2233
Q ss_pred eCCCCCccHHHHHHHHHHHHhcCCeE-EcCC
Q psy316 206 HDVHLDKESEHLNMAIKIMEQGGIVE-IIPE 235 (341)
Q Consensus 206 ~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e 235 (341)
.+. ++ +..+.++++|+.+|..+ ++++
T Consensus 168 ~g~--~~--~~~~~v~~ll~~~G~~~~~~g~ 194 (215)
T 2vns_A 168 CGD--QP--EAKRAVSEMALAMGFMPVDMGS 194 (215)
T ss_dssp EES--CH--HHHHHHHHHHHHTTCEEEECCS
T ss_pred ecC--CH--HHHHHHHHHHHHcCCceEeecc
Confidence 332 34 88899999999999865 4554
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=143.39 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=130.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------------------CCc-cccChHHHh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------------------MDF-ALNDNHRII 122 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------------------~g~-~~~s~~e~~ 122 (341)
|+|||+|||+|.||.++|..|.++|+ +|++|||++++++.+++. .++ .+++..+++
T Consensus 1 M~mkI~VIG~G~vG~~lA~~La~~G~----~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~ 76 (450)
T 3gg2_A 1 MSLDIAVVGIGYVGLVSATCFAELGA----NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAV 76 (450)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhcCC----EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHH
Confidence 56899999999999999999999995 999999999988877541 123 456778889
Q ss_pred hcCCEEEEeeChH----------HHHHHHHHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccC-CCCCCCCeEEE
Q psy316 123 KEAEYVFLAMKPQ----------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLV-PNPNDAPTIIR 188 (341)
Q Consensus 123 ~~aDvIilaV~~~----------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~-~~~~~~~~vvr 188 (341)
++||+||+|||.. .++++++++ .+++ +++++||+.+ ++++. .+.+.+.... ..+....+.+.
T Consensus 77 ~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i-~~~l--~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~ 152 (450)
T 3gg2_A 77 PEADIIFIAVGTPAGEDGSADMSYVLDAARSI-GRAM--SRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIA 152 (450)
T ss_dssp GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHH-HHHC--CSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred hcCCEEEEEcCCCcccCCCcChHHHHHHHHHH-HhhC--CCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEE
Confidence 9999999999865 899999999 8888 8898988775 45543 3333221100 00001121233
Q ss_pred EcCCchhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHhcCC---eEEcCCCchhHHHHHhcchHHHHHHHH
Q psy316 189 VMPNTAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQGGI---VEIIPESMMNSFGAIAGSGCAYLFLVM 256 (341)
Q Consensus 189 ~mpn~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~lG~---~~~v~e~~~d~~~al~g~gpa~~~~~~ 256 (341)
..|.. ...|. .++..+. ++ +..+.++++|+.++. .+.++...-..++.+.. +.+.+..+
T Consensus 153 ~~Pe~---a~eG~~~~~~~~p~~ivvG~~--~~--~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~--N~~~a~~i 223 (450)
T 3gg2_A 153 SNPEF---LKEGNAIDDFMKPDRVVVGVD--SD--RARELITSLYKPMLLNNFRVLFMDIASAEMTKYAA--NAMLATRI 223 (450)
T ss_dssp ECCCC---CCTTSHHHHHHSCSCEEEEES--SH--HHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHH--HHHHHHHH
T ss_pred echhh---hcccchhhhccCCCEEEEEcC--CH--HHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHH--HHHHHHHH
Confidence 33432 22221 3444442 24 788999999999986 45444322233344432 44555554
Q ss_pred HHHHH---HHHHcCCCHHHHHHHHH
Q psy316 257 DAMAD---GAVKQGIPRDMALRIGA 278 (341)
Q Consensus 257 eal~e---a~~~~Gl~~~~a~~lv~ 278 (341)
..+.| -+.+.|++.++..+++.
T Consensus 224 a~~nE~~~l~~~~Gid~~~v~~~~~ 248 (450)
T 3gg2_A 224 SFMNDVANLCERVGADVSMVRLGIG 248 (450)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHc
Confidence 44444 46789999998887765
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-15 Score=133.56 Aligned_cols=151 Identities=12% Similarity=0.091 Sum_probs=113.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
..|||+|||+|+||++|++.|.++|+ +|++|+|. + + +.++| |+|||++.+.+++.
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~----~V~~~~~~--------~----------~-~~~aD--ilavP~~ai~~vl~ 59 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGH----YVTVLHAP--------E----------D-IRDFE--LVVIDAHGVEGYVE 59 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTC----EEEECSSG--------G----------G-GGGCS--EEEECSSCHHHHHH
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCC----EEEEecCH--------H----------H-hccCC--EEEEcHHHHHHHHH
Confidence 35799999999999999999999995 99999983 1 1 45789 99999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIK 222 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ 222 (341)
++ .+.+ +++++|+++++.++.+.++...+ .+.. ++..+|.. ....++... ++ +..+.+++
T Consensus 60 ~l-~~~l--~~g~ivvd~sgs~~~~vl~~~~~------~g~~-fvg~HPm~-----g~~~~i~a~---d~--~a~~~l~~ 119 (232)
T 3dfu_A 60 KL-SAFA--RRGQMFLHTSLTHGITVMDPLET------SGGI-VMSAHPIG-----QDRWVASAL---DE--LGETIVGL 119 (232)
T ss_dssp HH-HTTC--CTTCEEEECCSSCCGGGGHHHHH------TTCE-EEEEEEEE-----TTEEEEEES---SH--HHHHHHHH
T ss_pred HH-HHhc--CCCCEEEEECCcCHHHHHHHHHh------CCCc-EEEeeeCC-----CCceeeeCC---CH--HHHHHHHH
Confidence 99 8888 89999999987777766665544 3445 66666652 123344443 24 68899999
Q ss_pred HHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHH
Q psy316 223 IMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDA 258 (341)
Q Consensus 223 ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~ea 258 (341)
|++.+|..+ +++++.++.+.|...+.|..+....++
T Consensus 120 L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A 156 (232)
T 3dfu_A 120 LVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDA 156 (232)
T ss_dssp HHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999865 468888887766655656555444333
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=130.02 Aligned_cols=135 Identities=13% Similarity=0.205 Sum_probs=103.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
..|||+|||+|+||++++..|.++|+ +|++|+|+++ .++++|+||+|||++.++++++
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~----~V~~~~~~~~------------------~~~~aD~vi~av~~~~~~~v~~ 75 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGH----EVTYYGSKDQ------------------ATTLGEIVIMAVPYPALAALAK 75 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC----EEEEECTTCC------------------CSSCCSEEEECSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEcCCHH------------------HhccCCEEEEcCCcHHHHHHHH
Confidence 35799999999999999999999984 9999999865 2457999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCC---------------HHHHHHhccccCCCCCCCCeEEEE-----cCCchhhhcCc--
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVD---------------LETLKKKLSVLVPNPNDAPTIIRV-----MPNTAMKYGKG-- 200 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~---------------~~~l~~~l~~~~~~~~~~~~vvr~-----mpn~p~~v~~g-- 200 (341)
++ .+.+ + +++||++++|++ .+.+++.++ +.+ +++. +|+.+.....+
T Consensus 76 ~l-~~~~--~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-------~~~-vv~~~~~~~~p~~~~~~~~g~~ 143 (209)
T 2raf_A 76 QY-ATQL--K-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-------DSQ-VLKAFNTTFAATLQSGQVNGKE 143 (209)
T ss_dssp HT-HHHH--T-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-------TSE-EEECSTTSCHHHHHHSEETTTE
T ss_pred HH-HHhc--C-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-------CCc-EEEeeecccHhhccccccCCCC
Confidence 99 8888 6 899999999886 466777776 356 7774 56655544333
Q ss_pred e-EEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCC
Q psy316 201 I-TGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPE 235 (341)
Q Consensus 201 ~-~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e 235 (341)
. .+++.++ ++ +..+.++++|+.+|.. +++++
T Consensus 144 ~~~~~~~g~--~~--~~~~~v~~ll~~~G~~~~~~~~ 176 (209)
T 2raf_A 144 PTTVLVAGN--DD--SAKQRFTRALADSPLEVKDAGK 176 (209)
T ss_dssp ECEEEEEES--CH--HHHHHHHHHTTTSSCEEEEEES
T ss_pred CceeEEcCC--CH--HHHHHHHHHHHHcCCceEeCCC
Confidence 2 3334432 34 7889999999999965 44554
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=136.41 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=112.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccC----------hHHHhhcCCEEEEe
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALND----------NHRIIKEAEYVFLA 131 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s----------~~e~~~~aDvIila 131 (341)
|+|||+|||+|+||++++..|. +| ++|++|+|++++++.+++ .|+ ...+ ..+....+|+||+|
T Consensus 1 M~mkI~IiGaGa~G~~~a~~L~-~g----~~V~~~~r~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 1 MSLKIGIIGGGSVGLLCAYYLS-LY----HDVTVVTRRQEQAAAIQS-EGIRLYKGGEEFRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TT----SEEEEECSCHHHHHHHHH-HCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHh-cC----CceEEEECCHHHHHHHHh-CCceEecCCCeecccccccccccCCCCEEEEE
Confidence 6789999999999999999999 88 499999999988888766 365 2211 12346789999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH-HHHHhccccCCCCCCCCeEEEEcCC---------chhhhcCce
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE-TLKKKLSVLVPNPNDAPTIIRVMPN---------TAMKYGKGI 201 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~-~l~~~l~~~~~~~~~~~~vvr~mpn---------~p~~v~~g~ 201 (341)
||++++.++++++ ++ + .+++ ||++.+|+..+ .++++++ ..+ ++..+.. .-...+.|.
T Consensus 75 vK~~~~~~~l~~l-~~-~--~~~~-ivs~~nGi~~~e~l~~~~~-------~~~-vl~g~~~~~a~~~~pg~v~~~~~g~ 141 (307)
T 3ego_A 75 VKQHQLQSVFSSL-ER-I--GKTN-ILFLQNGMGHIHDLKDWHV-------GHS-IYVGIVEHGAVRKSDTAVDHTGLGA 141 (307)
T ss_dssp CCGGGHHHHHHHT-TS-S--CCCE-EEECCSSSHHHHHHHTCCC-------SCE-EEEEEECCEEEECSSSEEEEEECCC
T ss_pred eCHHHHHHHHHHh-hc-C--CCCe-EEEecCCccHHHHHHHhCC-------CCc-EEEEEEeeceEECCCCEEEEeeeee
Confidence 9999999999998 76 4 4566 99999999974 6777766 234 4443322 212223444
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCC-------------chhHHHHHhcch
Q psy316 202 TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPES-------------MMNSFGAIAGSG 248 (341)
Q Consensus 202 ~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~-------------~~d~~~al~g~g 248 (341)
+.+..-+.. . +....+..+|+..|..+.++++ .++.++++.++.
T Consensus 142 ~~iG~~~~~-~--~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~ 198 (307)
T 3ego_A 142 IKWSAFDDA-E--PDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVK 198 (307)
T ss_dssp EEEEECTTC-C--GGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEeCCCC-c--HHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCC
Confidence 444332221 2 4445566667777777777654 256677777653
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-14 Score=145.99 Aligned_cols=187 Identities=10% Similarity=0.038 Sum_probs=134.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc-----------CcCCC-------------c-cccCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW-----------PEPMD-------------F-ALNDN 118 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l-----------~~~~g-------------~-~~~s~ 118 (341)
.+||+|||+|.||..||..|.++|+ +|++||+++++++.. .+ .| + .+.+.
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~----~V~l~D~~~~~~~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~d~ 388 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGT----PILMKDINEHGIEQGLAEAAKLLVGRVD-KGRMTPAKMAEVLNGIRPTLSY 388 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTC----CEEEECSSHHHHHHHHHHHHHHHHHHHT-TTSSCHHHHHHHHHHEEEESSS
T ss_pred CCEEEEECCChhhHHHHHHHHhCCC----EEEEEECCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHhcCeEEECCH
Confidence 4689999999999999999999995 999999999887652 12 12 2 33455
Q ss_pred HHHhhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh
Q psy316 119 HRIIKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK 196 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~ 196 (341)
+.+++||+||+|||.+ ..++++.++ .+++ +++++|+|.++++++..+.+.+. ...+ ++..++..|..
T Consensus 389 -~~~~~aDlVIeaV~e~~~vk~~v~~~l-~~~~--~~~~IlasntStl~i~~la~~~~------~~~~-~ig~hf~~P~~ 457 (715)
T 1wdk_A 389 -GDFGNVDLVVEAVVENPKVKQAVLAEV-ENHV--REDAILASNTSTISISLLAKALK------RPEN-FVGMHFFNPVH 457 (715)
T ss_dssp -TTGGGCSEEEECCCSCHHHHHHHHHHH-HTTS--CTTCEEEECCSSSCHHHHGGGCS------CGGG-EEEEECCSSTT
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHH-HhhC--CCCeEEEeCCCCCCHHHHHHHhc------Cccc-eEEEEccCCcc
Confidence 6788999999999954 356788888 8888 88899999999999998887765 3456 78888877776
Q ss_pred hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q psy316 197 YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALR 275 (341)
Q Consensus 197 v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~ 275 (341)
....+ .++.++..++ +.++.+.++++.+|+.. ++.+. -.. ..+ ..+..++.|++.- ...|++.++..+
T Consensus 458 ~~~lv-evv~g~~t~~--e~~~~~~~l~~~lGk~~v~v~d~-~Gf----i~N-ril~~~~~Ea~~l--~~~G~~~~~id~ 526 (715)
T 1wdk_A 458 MMPLV-EVIRGEKSSD--LAVATTVAYAKKMGKNPIVVNDC-PGF----LVN-RVLFPYFGGFAKL--VSAGVDFVRIDK 526 (715)
T ss_dssp TCCEE-EEEECSSCCH--HHHHHHHHHHHHTTCEEEEEESC-TTT----THH-HHHHHHHHHHHHH--HHTTCCHHHHHH
T ss_pred cCceE-EEEECCCCCH--HHHHHHHHHHHHhCCEeEEEcCC-CCh----hhh-HHHHHHHHHHHHH--HHCCCCHHHHHH
Confidence 55433 4456666667 89999999999999864 45432 111 110 1122334444322 245899887776
Q ss_pred HH
Q psy316 276 IG 277 (341)
Q Consensus 276 lv 277 (341)
++
T Consensus 527 ~~ 528 (715)
T 1wdk_A 527 VM 528 (715)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=135.16 Aligned_cols=150 Identities=11% Similarity=0.055 Sum_probs=105.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc----cccChHHHh-hcCCEEEEeeChHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF----ALNDNHRII-KEAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~----~~~s~~e~~-~~aDvIilaV~~~~v 137 (341)
|+|||+|||+|+||++++..|.++|+ +|++|+|+++.++.... .|. ...++.+.+ ..+|+||+|||++++
T Consensus 1 M~mkI~iiGaGa~G~~~a~~L~~~g~----~V~~~~r~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~ 75 (294)
T 3g17_A 1 MSLSVAIIGPGAVGTTIAYELQQSLP----HTTLIGRHAKTITYYTV-PHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQL 75 (294)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHHCT----TCEEEESSCEEEEEESS-TTSCCEEEEEEEGGGCCSCEEEEEECSCGGGH
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC----eEEEEEeccCcEEEEec-CCeeccceecCchHhcCCCCCEEEEeCCccCH
Confidence 67899999999999999999999984 89999999776654332 342 223444544 789999999999999
Q ss_pred HHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCC------chhhhcCceEEEEeCCCCC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPN------TAMKYGKGITGMCHDVHLD 211 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn------~p~~v~~g~~~l~~~~~~~ 211 (341)
.++++++ ++.+ .++++||++.+|+..++. ++ ..+ ++..... .|..+..+...+..+.
T Consensus 76 ~~~l~~l-~~~l--~~~~~iv~~~nGi~~~~~---~~-------~~~-v~~g~~~~~a~~~~pg~v~~~~~~~~~~~--- 138 (294)
T 3g17_A 76 DAVIPHL-TYLA--HEDTLIILAQNGYGQLEH---IP-------FKN-VCQAVVYISGQKKGDVVTHFRDYQLRIQD--- 138 (294)
T ss_dssp HHHGGGH-HHHE--EEEEEEEECCSSCCCGGG---CC-------CSC-EEECEEEEEEEEETTEEEEEEEEEEEEEC---
T ss_pred HHHHHHH-HHhh--CCCCEEEEeccCcccHhh---CC-------CCc-EEEEEEEEEEEEcCCCEEEECCCEEecCc---
Confidence 9999999 9988 788899999999997654 55 123 3322111 1111111111222222
Q ss_pred ccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 212 KESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
. +..+.+.++|+..|..++++++
T Consensus 139 ~--~~~~~l~~~l~~~~~~~~~~~d 161 (294)
T 3g17_A 139 N--ALTRQFRDLVQDSQIDIVLEAN 161 (294)
T ss_dssp S--HHHHHHHHHTTTSSCEEEEESS
T ss_pred c--HHHHHHHHHHHhCCCceEEChH
Confidence 3 6678889999998988777654
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=134.39 Aligned_cols=154 Identities=10% Similarity=0.159 Sum_probs=116.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc---------------------CCCc-cccChHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE---------------------PMDF-ALNDNHRI 121 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~---------------------~~g~-~~~s~~e~ 121 (341)
.+||+|||+|.||..||..|.++|+ +|++|||++++++.+.+ .... .+.+. +.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~----~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~ 111 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGI----SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KE 111 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC----EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HH
Confidence 3689999999999999999999995 99999999987665322 0011 33454 56
Q ss_pred hhcCCEEEEeeChH--HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMKPQ--YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~~~--~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
+.+||+||+|||.+ ...+++.++ .+.+ +++++|+|.++++++..+.+.+. ...+ ++..++..|.....
T Consensus 112 ~~~aDlVIeaVpe~~~~k~~v~~~l-~~~~--~~~~ii~snTs~~~~~~la~~~~------~~~~-~ig~hf~~P~~~~~ 181 (463)
T 1zcj_A 112 LSTVDLVVEAVFEDMNLKKKVFAEL-SALC--KPGAFLCTNTSALNVDDIASSTD------RPQL-VIGTHFFSPAHVMR 181 (463)
T ss_dssp GTTCSEEEECCCSCHHHHHHHHHHH-HHHS--CTTCEEEECCSSSCHHHHHTTSS------CGGG-EEEEEECSSTTTCC
T ss_pred HCCCCEEEEcCCCCHHHHHHHHHHH-HhhC--CCCeEEEeCCCCcCHHHHHHHhc------CCcc-eEEeecCCCcccce
Confidence 88999999999864 346788888 8888 88999999888888888887665 3456 77777655654433
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCC
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPE 235 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e 235 (341)
...++.++..++ +.++.+.++++.+|+.. ++.+
T Consensus 182 -lvevv~g~~t~~--e~~~~~~~l~~~lGk~~v~v~~ 215 (463)
T 1zcj_A 182 -LLEVIPSRYSSP--TTIATVMSLSKKIGKIGVVVGN 215 (463)
T ss_dssp -EEEEEECSSCCH--HHHHHHHHHHHHTTCEEEEBCC
T ss_pred -eEEEeCCCCCCH--HHHHHHHHHHHHhCCEEEEECC
Confidence 344566666677 89999999999999864 4543
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-13 Score=131.17 Aligned_cols=197 Identities=14% Similarity=0.171 Sum_probs=131.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------------------C-c-cccChHHHh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------------------D-F-ALNDNHRII 122 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------------------g-~-~~~s~~e~~ 122 (341)
-..+|+|||+|.||.++|..|.++|+ +|++|||++++.+.+++.. + + .+++..+++
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~G~----~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~ 82 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDFGH----EVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGV 82 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred CceEEEEEcCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHH
Confidence 46789999999999999999999995 9999999999999887631 2 3 457788899
Q ss_pred hcCCEEEEeeChH-----------HHHHHHHHhhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEE
Q psy316 123 KEAEYVFLAMKPQ-----------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIR 188 (341)
Q Consensus 123 ~~aDvIilaV~~~-----------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr 188 (341)
++||+||+|||.. .++++++++ .+++ +++++||..+ ++++.+ +.+.+....+. .+. .+.
T Consensus 83 ~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i-~~~l--~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~-~d~--~v~ 155 (446)
T 4a7p_A 83 KDADAVFIAVGTPSRRGDGHADLSYVFAAAREI-AENL--TKPSVIVTKS-TVPVGTGDEVERIIAEVAPN-SGA--KVV 155 (446)
T ss_dssp TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHH-HHSC--CSCCEEEECS-CCCTTHHHHHHHHHHHHSTT-SCC--EEE
T ss_pred hcCCEEEEEcCCCCccccCCccHHHHHHHHHHH-HHhc--CCCCEEEEeC-CCCchHHHHHHHHHHHhCCC-CCc--eEE
Confidence 9999999998632 599999999 8888 8899999864 666533 33322210000 112 333
Q ss_pred EcCCchhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHhcCCe----EEcCCCchhHHHHHhcchHHHHHHH
Q psy316 189 VMPNTAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQGGIV----EIIPESMMNSFGAIAGSGCAYLFLV 255 (341)
Q Consensus 189 ~mpn~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~lG~~----~~v~e~~~d~~~al~g~gpa~~~~~ 255 (341)
..|.. ...|. .++..++ ++ +..+.++++|+.++.. +.++.-.-..++.+.. ++|.+..
T Consensus 156 ~~Pe~---a~eG~a~~d~~~p~~ivvG~~--~~--~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~--N~~~a~~ 226 (446)
T 4a7p_A 156 SNPEF---LREGAAIEDFKRPDRVVVGTE--DE--FARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAA--NAFLAVK 226 (446)
T ss_dssp ECCCC---CCTTSHHHHHHSCSCEEEECS--CH--HHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHH--HHHHHHH
T ss_pred eCccc---ccccchhhhccCCCEEEEeCC--cH--HHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHH--HHHHHHH
Confidence 44432 22222 3455543 24 7788999999998863 4444322233334332 4555555
Q ss_pred HHHHHHH---HHHcCCCHHHHHHHHHH
Q psy316 256 MDAMADG---AVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 256 ~eal~ea---~~~~Gl~~~~a~~lv~~ 279 (341)
+..+.|. +.+.|++.++..+++..
T Consensus 227 ia~~nE~~~l~~~~GiD~~~v~~~~~~ 253 (446)
T 4a7p_A 227 ITFINEIADLCEQVGADVQEVSRGIGM 253 (446)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 5555443 57999999988877653
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-13 Score=129.28 Aligned_cols=186 Identities=14% Similarity=0.206 Sum_probs=126.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-----------------CCc-cccChHHHhhcC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-----------------MDF-ALNDNHRIIKEA 125 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-----------------~g~-~~~s~~e~~~~a 125 (341)
.|||+|||+|.||.++|..|.+ |+ +|++|||++++++.+++. .++ .++++.+++++|
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G~----~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~a 110 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-NH----EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNA 110 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-TS----EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHc-CC----eEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCC
Confidence 4699999999999999999887 84 999999999998877652 134 567778899999
Q ss_pred CEEEEeeChH-----------HHHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEEEcC
Q psy316 126 EYVFLAMKPQ-----------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIRVMP 191 (341)
Q Consensus 126 DvIilaV~~~-----------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr~mp 191 (341)
|+||+|||.. .++++++++ .+ + +++++||.. +++++ +.+.+.+. . .. + ..-|
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i-~~-l--~~g~iVV~~-STv~pgtt~~l~~~l~------~-~~-v-~~sP 176 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDV-TE-I--NPNAVMIIK-STIPVGFTRDIKERLG------I-DN-V-IFSP 176 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHH-HH-H--CTTSEEEEC-SCCCTTHHHHHHHHHT------C-CC-E-EECC
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHH-Hh-c--CCCcEEEEe-CCCChHHHHHHHHHHh------h-cc-E-eecC
Confidence 9999999854 688899998 88 8 889988865 55664 44555554 1 23 3 2233
Q ss_pred CchhhhcCc---------eEEEEeCCCCCccHHHHHHHHHHHHh--cCC--eEEcCCCchhHHHHHhcchHHHHHHHHHH
Q psy316 192 NTAMKYGKG---------ITGMCHDVHLDKESEHLNMAIKIMEQ--GGI--VEIIPESMMNSFGAIAGSGCAYLFLVMDA 258 (341)
Q Consensus 192 n~p~~v~~g---------~~~l~~~~~~~~~~~~~~~v~~ll~~--lG~--~~~v~e~~~d~~~al~g~gpa~~~~~~ea 258 (341)
...+.| ..++..++ + +..+.+.++|.. ++. .+.+....-...+.+.. +.|.+.-+..
T Consensus 177 ---e~~~~G~A~~~~l~p~rIvvG~~---~--~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~--N~~~a~~Ia~ 246 (432)
T 3pid_A 177 ---EFLREGRALYDNLHPSRIVIGER---S--ARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFA--NTYLALRVAY 246 (432)
T ss_dssp ---CCCCTTSHHHHHHSCSCEEESSC---S--HHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHH--HHHHHHHHHH
T ss_pred ---ccCCcchhhhcccCCceEEecCC---H--HHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHH--HHHHHHHHHH
Confidence 222222 13455543 3 777888999976 442 34444322233344432 4555554444
Q ss_pred HHH---HHHHcCCCHHHHHHHHH
Q psy316 259 MAD---GAVKQGIPRDMALRIGA 278 (341)
Q Consensus 259 l~e---a~~~~Gl~~~~a~~lv~ 278 (341)
+.| .+.+.|++.++..+.+.
T Consensus 247 ~nEl~~lae~~GiD~~~v~~~~~ 269 (432)
T 3pid_A 247 FNELDSYAESQGLNSKQIIEGVC 269 (432)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHc
Confidence 444 36799999998877664
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-13 Score=138.13 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=129.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc-----------CcCCC-------------c-cccChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW-----------PEPMD-------------F-ALNDNH 119 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l-----------~~~~g-------------~-~~~s~~ 119 (341)
+||+|||+|.||..||..|.++|+ +|++|||++++++.. .+ .| + .+.+.
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~----~V~l~D~~~~~~~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~d~- 386 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVKANLQSRVR-KGSMSQEKFEKTMSLLKGSLDY- 386 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTC----CEEEECSSHHHHHHHHHHHHHHHHHTTC-----CTTHHHHTTTSEEEESSS-
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCC----EEEEEECCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHhcceEEeCCH-
Confidence 689999999999999999999995 999999999877643 11 12 2 23455
Q ss_pred HHhhcCCEEEEeeChHH--HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 120 RIIKEAEYVFLAMKPQY--LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 120 e~~~~aDvIilaV~~~~--v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+.+++||+||+|||.+. .+.++.++ .+++ +++++|++.+++++++.+.+.+. ...+ ++..++-.|...
T Consensus 387 ~~~~~aDlVIeaVpe~~~vk~~v~~~l-~~~~--~~~~IlasntStl~i~~la~~~~------~p~~-~iG~hf~~P~~~ 456 (725)
T 2wtb_A 387 ESFRDVDMVIEAVIENISLKQQIFADL-EKYC--PQHCILASNTSTIDLNKIGERTK------SQDR-IVGAHFFSPAHI 456 (725)
T ss_dssp GGGTTCSEEEECCCSCHHHHHHHHHHH-HHHS--CTTCEEEECCSSSCHHHHTTTCS------CTTT-EEEEEECSSTTT
T ss_pred HHHCCCCEEEEcCcCCHHHHHHHHHHH-HhhC--CCCcEEEeCCCCCCHHHHHHHhc------CCCC-EEEecCCCCccc
Confidence 57889999999999653 45677888 8888 88889989889999988877665 3346 666665445543
Q ss_pred cCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-EcCCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q psy316 198 GKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-IIPESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRI 276 (341)
Q Consensus 198 ~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~l 276 (341)
.. ...++.++..++ +.++.+.++++.+|+.. ++.+. ...+ .+ ..+..++.|++.- .+.|++.++..++
T Consensus 457 ~~-lvevv~g~~t~~--e~~~~~~~l~~~lGk~~v~v~d~-~Gfi----~N-ril~~~~~Ea~~l--~~~G~~~e~id~~ 525 (725)
T 2wtb_A 457 MP-LLEIVRTNHTSA--QVIVDLLDVGKKIKKTPVVVGNC-TGFA----VN-RMFFPYTQAAMFL--VECGADPYLIDRA 525 (725)
T ss_dssp CC-EEEEEECSSCCH--HHHHHHHHHHHHTTCEEEEEESS-TTTT----HH-HHHHHHHHHHHHH--HHTTCCHHHHHHH
T ss_pred Cc-eEEEEECCCCCH--HHHHHHHHHHHHhCCEEEEECCC-ccHH----HH-HHHHHHHHHHHHH--HHCCCCHHHHHHH
Confidence 33 345566766677 89999999999999864 45432 1111 00 1122234444322 2458998887776
Q ss_pred H
Q psy316 277 G 277 (341)
Q Consensus 277 v 277 (341)
+
T Consensus 526 ~ 526 (725)
T 2wtb_A 526 I 526 (725)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.5e-14 Score=136.77 Aligned_cols=197 Identities=9% Similarity=0.077 Sum_probs=125.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------------------CC-c-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------------------MD-F-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------------------~g-~-~~~s~~e~~~~ 124 (341)
|||+|||+|.||..++..|.++|+ +|++|+|++++++.+++. .| + .+.+..+++++
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~----~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~ 76 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGH----EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD 76 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhcc
Confidence 589999999999999999999995 999999999998887652 23 4 45677778899
Q ss_pred CCEEEEeeChH-H---------HHHHHHHhhhcccccCC---CcEEEEecCCCCH----HHHHHhccccCCCCCCCCeEE
Q psy316 125 AEYVFLAMKPQ-Y---------LDSAIQGLVNDKVTLNS---SRCIISMLVGVDL----ETLKKKLSVLVPNPNDAPTII 187 (341)
Q Consensus 125 aDvIilaV~~~-~---------v~~vl~~i~~~~l~~~~---~~iIVs~~agi~~----~~l~~~l~~~~~~~~~~~~vv 187 (341)
+|+||+|||.. . ++++++++ .+.+ ++ +++||..+ ++.+ +.+.+.+....+...+..+.+
T Consensus 77 aDvviiaVptp~~~~~~~dl~~v~~v~~~i-~~~l--~~~~~~~iVV~~S-tv~~g~t~~~l~~~l~~~~g~~~~~~~~v 152 (436)
T 1mv8_A 77 SDVSFICVGTPSKKNGDLDLGYIETVCREI-GFAI--REKSERHTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVDFGV 152 (436)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHH-HHHH--TTCCSCCEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTTBEE
T ss_pred CCEEEEEcCCCcccCCCcchHHHHHHHHHH-HHHh--cccCCCcEEEEeC-CcCCCchHHHHHHHHHHhcCcccCCcEEE
Confidence 99999999854 3 89999999 8888 77 88888653 3332 334444431000000011022
Q ss_pred EEcCCchhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchhHHHHHhcchHHHHHH---H
Q psy316 188 RVMPNTAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLFL---V 255 (341)
Q Consensus 188 r~mpn~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~~---~ 255 (341)
...|. ....|. .++..+. ++ +..+.++++++.+|..+++++-.......+. .++|.+. +
T Consensus 153 ~~~Pe---~~~~G~~~~~~~~~~~iv~G~~--~~--~~~~~~~~l~~~~~~~v~~~~~~~ae~~Kl~--~N~~~a~~ia~ 223 (436)
T 1mv8_A 153 GTNPE---FLRESTAIKDYDFPPMTVIGEL--DK--QTGDLLEEIYRELDAPIIRKTVEVAEMIKYT--CNVWHAAKVTF 223 (436)
T ss_dssp EECCC---CCCTTSHHHHHHSCSCEEEEES--SH--HHHHHHHHHHTTSSSCEEEEEHHHHHHHHHH--HHHHHHHHHHH
T ss_pred EECcc---cccccccchhccCCCEEEEEcC--CH--HHHHHHHHHHhccCCCEEcCCHHHHHHHHHH--HHHHHHHHHHH
Confidence 22332 222222 2333332 34 7788899999999986655332222333333 2344433 3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Q psy316 256 MDAMADGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 256 ~eal~ea~~~~Gl~~~~a~~lv~ 278 (341)
+..+...+.+.|++.++..+++.
T Consensus 224 ~nE~~~l~~~~Gid~~~v~~~~~ 246 (436)
T 1mv8_A 224 ANEIGNIAKAVGVDGREVMDVIC 246 (436)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHhc
Confidence 44445556789999887766554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=130.46 Aligned_cols=201 Identities=12% Similarity=0.166 Sum_probs=124.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------------------CCc-cccChHHHhhc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------------------MDF-ALNDNHRIIKE 124 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------------------~g~-~~~s~~e~~~~ 124 (341)
+|||+|||+|.||..++..|.++|. .++|++|||++++++.+++. .++ .+.+..+++++
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~--G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~ 82 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCP--EIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE 82 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCT--TSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCC--CCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhc
Confidence 3799999999999999999999831 25999999999998886531 134 45677788899
Q ss_pred CCEEEEeeCh-HH--------------HHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhccccCCCCCCCCeE
Q psy316 125 AEYVFLAMKP-QY--------------LDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLSVLVPNPNDAPTI 186 (341)
Q Consensus 125 aDvIilaV~~-~~--------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~~~~~~~~~~~~v 186 (341)
+|+||+|||. .. +.++++++ .+.+ +++++||..+ +++ .+.+.+.+...-. ... -
T Consensus 83 aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i-~~~l--~~g~iVV~~S-Tv~~g~~~~l~~~l~~~~~--~~~--d 154 (467)
T 2q3e_A 83 ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRI-VQNS--NGYKIVTEKS-TVPVRAAESIRRIFDANTK--PNL--N 154 (467)
T ss_dssp CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHH-HHTC--CSEEEEEECS-CCCTTHHHHHHHHHHHTCC--TTC--E
T ss_pred CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHH-HhhC--CCCCEEEECC-cCCchHHHHHHHHHHHhCC--CCC--C
Confidence 9999999973 32 57788888 8888 7888888663 333 2345554442000 001 1
Q ss_pred EEEcCCchhhhcCceE---------EEEeCCC--CCccHHHHHHHHHHHHhc-CC-eEEcCCCchhHHHHHhcchHHHHH
Q psy316 187 IRVMPNTAMKYGKGIT---------GMCHDVH--LDKESEHLNMAIKIMEQG-GI-VEIIPESMMNSFGAIAGSGCAYLF 253 (341)
Q Consensus 187 vr~mpn~p~~v~~g~~---------~l~~~~~--~~~~~~~~~~v~~ll~~l-G~-~~~v~e~~~d~~~al~g~gpa~~~ 253 (341)
+.++ ..|.....|.. ++..++. .++ +..+.++++++.+ |. .+++++........+.. +.+.+
T Consensus 155 ~~V~-~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~--~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~--N~~~a 229 (467)
T 2q3e_A 155 LQVL-SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQ--RAVQALCAVYEHWVPREKILTTNTWSSELSKLAA--NAFLA 229 (467)
T ss_dssp EEEE-ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHH--HHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHH--HHHHH
T ss_pred eEEE-eCHHHhhcccchhhccCCCEEEECCCCCCCCH--HHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHH--HHHHH
Confidence 1222 12333333432 4444421 134 7788999999998 64 45554322223333332 33433
Q ss_pred HHHHHH---HHHHHHcCCCHHHHHHHHHH
Q psy316 254 LVMDAM---ADGAVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 254 ~~~eal---~ea~~~~Gl~~~~a~~lv~~ 279 (341)
..+..+ ...+.+.|++.++..+++..
T Consensus 230 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 258 (467)
T 2q3e_A 230 QRISSINSISALCEATGADVEEVATAIGM 258 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHcC
Confidence 333333 33467899999988776653
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=128.75 Aligned_cols=206 Identities=12% Similarity=0.145 Sum_probs=125.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------------------Cc-cccChHHHhh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------------------DF-ALNDNHRIIK 123 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------------------g~-~~~s~~e~~~ 123 (341)
|+|||+|||+|.||..+|..|.++|. .++|++|||++++++.+++.. ++ .+++..+++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~--g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~ 85 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCP--HITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIA 85 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCT--TSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhh
Confidence 35799999999999999999999831 259999999999998887520 13 3456667889
Q ss_pred cCCEEEEeeChH---------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCe
Q psy316 124 EAEYVFLAMKPQ---------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPT 185 (341)
Q Consensus 124 ~aDvIilaV~~~---------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~ 185 (341)
++|+||+|||.. .+.++++++ .+++ +++++||..+ +++. +.+.+.+....+......+
T Consensus 86 ~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i-~~~l--~~g~iVV~~S-Tv~~gt~~~l~~~l~~~~~~~~~~d~ 161 (481)
T 2o3j_A 86 EADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTI-AQYA--GGPKIVVEKS-TVPVKAAESIGCILREAQKNNENLKF 161 (481)
T ss_dssp HCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHH-HHHC--CSCEEEEECS-CCCTTHHHHHHHHHHHHTC----CCE
T ss_pred cCCEEEEecCCccccccccccCCCcHHHHHHHHHHH-HHhC--CCCCEEEECC-CCCCCHHHHHHHHHHHhhCcCcCCce
Confidence 999999998742 388899998 8888 8888888653 4443 3444444310000001110
Q ss_pred EEEEcCCchhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHhcCC--eEEcCCCchhHHHHHhcchHHHHHH
Q psy316 186 IIRVMPNTAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQGGI--VEIIPESMMNSFGAIAGSGCAYLFL 254 (341)
Q Consensus 186 vvr~mpn~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~lG~--~~~v~e~~~d~~~al~g~gpa~~~~ 254 (341)
.+...|. ....|. .++..+.......+..+.++++|+.++. .+.++.-.-..+..+.. +.+.+.
T Consensus 162 ~v~~~Pe---~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~--N~~~a~ 236 (481)
T 2o3j_A 162 QVLSNPE---FLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVA--NAFLAQ 236 (481)
T ss_dssp EEEECCC---CCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHH--HHHHHH
T ss_pred EEEeCcc---cccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHH--HHHHHH
Confidence 1333342 112221 3444443211001456788999999985 44444322233344332 233333
Q ss_pred HH---HHHHHHHHHcCCCHHHHHHHHHH
Q psy316 255 VM---DAMADGAVKQGIPRDMALRIGAQ 279 (341)
Q Consensus 255 ~~---eal~ea~~~~Gl~~~~a~~lv~~ 279 (341)
.+ ..+...+.+.|++.++..+.+..
T Consensus 237 ~ia~~nE~~~la~~~Gid~~~v~~~~~~ 264 (481)
T 2o3j_A 237 RISSINSISAVCEATGAEISEVAHAVGY 264 (481)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHcc
Confidence 33 33344467899999988776653
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-12 Score=125.90 Aligned_cols=200 Identities=13% Similarity=0.081 Sum_probs=125.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------C-------------c-cccChHHHh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------D-------------F-ALNDNHRII 122 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------g-------------~-~~~s~~e~~ 122 (341)
-.|||+|||+|.||..+|..|.++|+ +|++|||++++++.+++.. | + .+++..+++
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~----~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~ 82 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGH----DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAV 82 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHh
Confidence 56899999999999999999999995 9999999999988876531 2 2 345666788
Q ss_pred hcCCEEEEeeCh----------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCC---CCeE
Q psy316 123 KEAEYVFLAMKP----------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPND---APTI 186 (341)
Q Consensus 123 ~~aDvIilaV~~----------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~---~~~v 186 (341)
.+||+||+|||. +.++++++++ .+++ +++++||..+ ++++ +.+.+.+....+ .+ ..+.
T Consensus 83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i-~~~l--~~~~iVV~~S-Tv~~gt~~~l~~~l~~~~~--~g~~~~~~~ 156 (478)
T 2y0c_A 83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNI-GRYM--TGFKVIVDKS-TVPVGTAERVRAAVAEELA--KRGGDQMFS 156 (478)
T ss_dssp HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHH-HHHC--CSCEEEEECS-CCCTTHHHHHHHHHHHHHH--HTTCCCCEE
T ss_pred hcCCEEEEEeCCCcccCCCccHHHHHHHHHHH-HHhc--CCCCEEEEeC-CcCCCchHHHHHHHHHHhc--CCCCCccEE
Confidence 999999999986 8999999999 8888 8888888764 6654 333333321000 01 2212
Q ss_pred EEEcCCchhhhcCce---------EEEEeCCCCCccHHHHHHHHHHHHhcCC---eEEcCCCchhHHHHHhcchHHHHHH
Q psy316 187 IRVMPNTAMKYGKGI---------TGMCHDVHLDKESEHLNMAIKIMEQGGI---VEIIPESMMNSFGAIAGSGCAYLFL 254 (341)
Q Consensus 187 vr~mpn~p~~v~~g~---------~~l~~~~~~~~~~~~~~~v~~ll~~lG~---~~~v~e~~~d~~~al~g~gpa~~~~ 254 (341)
+-..|. ....|. .++..+.+.....+..+.+.++|+.++. .+.++.-.-..+..+.. +++.+.
T Consensus 157 v~~~Pe---~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~--N~~~a~ 231 (478)
T 2y0c_A 157 VVSNPE---FLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAA--NAMLAT 231 (478)
T ss_dssp EEECCC---CCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHH--HHHHHH
T ss_pred EEEChh---hhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHH--HHHHHH
Confidence 233332 222222 3444432110000456788999998774 44444322223333332 334433
Q ss_pred ---HHHHHHHHHHHcCCCHHHHHHHH
Q psy316 255 ---VMDAMADGAVKQGIPRDMALRIG 277 (341)
Q Consensus 255 ---~~eal~ea~~~~Gl~~~~a~~lv 277 (341)
++..+...+.+.|++.++..+.+
T Consensus 232 ~ia~~nE~~~la~~~Gid~~~v~~~i 257 (478)
T 2y0c_A 232 RISFMNELANLADRFGADIEAVRRGI 257 (478)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33334445679999998766544
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-11 Score=116.95 Aligned_cols=153 Identities=10% Similarity=0.058 Sum_probs=120.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC-----------c------CC------C-c-cccCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP-----------E------PM------D-F-ALNDN 118 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~-----------~------~~------g-~-~~~s~ 118 (341)
..||+|||+|.||+.||..++.+|+ +|+++|++++.+++.. + .. + + .+++.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~----~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l 81 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGF----RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNL 81 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC----CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccch
Confidence 4689999999999999999999995 9999999987654321 1 00 0 1 34566
Q ss_pred HHHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhh
Q psy316 119 HRIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMK 196 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~ 196 (341)
.+++++||+|+-||+- ..-++++.++ ..++ +++.||.|.++++++..|.+.+. ...+ ++..||-.|..
T Consensus 82 ~~a~~~ad~ViEav~E~l~iK~~lf~~l-~~~~--~~~aIlaSNTSsl~is~ia~~~~------~p~r-~ig~HffNP~~ 151 (319)
T 3ado_A 82 AEAVEGVVHIQECVPENLDLKRKIFAQL-DSIV--DDRVVLSSSSSCLLPSKLFTGLA------HVKQ-CIVAHPVNPPY 151 (319)
T ss_dssp HHHTTTEEEEEECCCSCHHHHHHHHHHH-HTTC--CSSSEEEECCSSCCHHHHHTTCT------TGGG-EEEEEECSSTT
T ss_pred HhHhccCcEEeeccccHHHHHHHHHHHH-HHHh--hhcceeehhhhhccchhhhhhcc------CCCc-EEEecCCCCcc
Confidence 7889999999999984 4456788999 8888 89999999999999999998776 3567 88888766665
Q ss_pred hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeE-Ec
Q psy316 197 YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVE-II 233 (341)
Q Consensus 197 v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~-~v 233 (341)
.-. ..=++.++..++ +..+.+..+++.+|+.. .+
T Consensus 152 ~m~-LVEiv~g~~Ts~--~~~~~~~~~~~~~gk~pv~v 186 (319)
T 3ado_A 152 YIP-LVELVPHPETSP--ATVDRTHALMRKIGQSPVRV 186 (319)
T ss_dssp TCC-EEEEEECTTCCH--HHHHHHHHHHHHTTCEEEEC
T ss_pred ccc-hHHhcCCCCCcH--HHHHHHHHHHHHhCCccCCc
Confidence 543 333567777777 99999999999999764 45
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-12 Score=121.37 Aligned_cols=194 Identities=16% Similarity=0.138 Sum_probs=119.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-----------------Cc-cccChHHHhhcCC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-----------------DF-ALNDNHRIIKEAE 126 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-----------------g~-~~~s~~e~~~~aD 126 (341)
|||+|||+|.||..++..|.+ |+ +|++|+|++++++.+++.. .+ .+.+..+.+.++|
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~----~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aD 75 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QN----EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAE 75 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS----EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCS
T ss_pred CEEEEECCCHHHHHHHHHHhC-CC----EEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCC
Confidence 589999999999999999998 84 9999999999988876531 12 2345667888999
Q ss_pred EEEEeeChH-----------HHHHHHHHhhhcccccCCCcEEEE-ecCCCC-HHHHHHhccccCCCCCCCCeEEEEcCCc
Q psy316 127 YVFLAMKPQ-----------YLDSAIQGLVNDKVTLNSSRCIIS-MLVGVD-LETLKKKLSVLVPNPNDAPTIIRVMPNT 193 (341)
Q Consensus 127 vIilaV~~~-----------~v~~vl~~i~~~~l~~~~~~iIVs-~~agi~-~~~l~~~l~~~~~~~~~~~~vvr~mpn~ 193 (341)
+||+|||+. .+.++++++ .+ + +++++||. .+.+.. .+.+.+.++ .. . ++ ..|..
T Consensus 76 vviiavpt~~~~~~~~~dl~~v~~v~~~i-~~-l--~~~~iVV~~ST~~~g~~~~l~~~~~------~~-~-v~-~~Pe~ 142 (402)
T 1dlj_A 76 LVIIATPTNYNSRINYFDTQHVETVIKEV-LS-V--NSHATLIIKSTIPIGFITEMRQKFQ------TD-R-II-FSPEF 142 (402)
T ss_dssp EEEECCCCCEETTTTEECCHHHHHHHHHH-HH-H--CSSCEEEECSCCCTTHHHHHHHHTT------CS-C-EE-ECCCC
T ss_pred EEEEecCCCcccCCCCccHHHHHHHHHHH-Hh-h--CCCCEEEEeCCCCccHHHHHHHHhC------CC-e-EE-ECCcc
Confidence 999999976 599999999 88 8 88888885 334443 456666666 22 4 43 22321
Q ss_pred --hhhh----cCceEEEEeCCCCC--ccHHHHHHHHHHHHhcC-C---eEEcCCCchhHHHHHhcchHHHHHH---HHHH
Q psy316 194 --AMKY----GKGITGMCHDVHLD--KESEHLNMAIKIMEQGG-I---VEIIPESMMNSFGAIAGSGCAYLFL---VMDA 258 (341)
Q Consensus 194 --p~~v----~~g~~~l~~~~~~~--~~~~~~~~v~~ll~~lG-~---~~~v~e~~~d~~~al~g~gpa~~~~---~~ea 258 (341)
+... ...-.++..+.... +..+..+.+.++|...+ . .++.+.-.-..+..+.. +++.+. ++..
T Consensus 143 ~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~--N~~~a~~ia~~nE 220 (402)
T 1dlj_A 143 LRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFA--NTYLALRVAYFNE 220 (402)
T ss_dssp CCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred ccCcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 1100 01112344443211 00134566788886532 2 34443322222333322 233332 2333
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q psy316 259 MADGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 259 l~ea~~~~Gl~~~~a~~lv~ 278 (341)
+...+.+.|++.++..+.+.
T Consensus 221 ~~~l~~~~Gid~~~v~~~~~ 240 (402)
T 1dlj_A 221 LDTYAESRKLNSHMIIQGIS 240 (402)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHhc
Confidence 44456799999998877664
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-12 Score=123.87 Aligned_cols=195 Identities=11% Similarity=0.057 Sum_probs=123.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc-CCCCCC-eEEEEcCChh----hhhhcCcC--------------------CC-c-cc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRT-GLCIPA-QIIASAPSER----FKLHWPEP--------------------MD-F-AL 115 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~-G~~~~~-~V~v~~r~~e----~~~~l~~~--------------------~g-~-~~ 115 (341)
.|||+|||+|.||..+|..|.++ | + +|++|||+++ +++.+++. .| + .+
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G----~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~t 93 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPC----FEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECT 93 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTT----CCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC----CCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEe
Confidence 47999999999999999999999 8 6 9999999999 88777641 12 2 33
Q ss_pred cChHHHhhcCCEEEEeeChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCHH---HHH-----Hhccc
Q psy316 116 NDNHRIIKEAEYVFLAMKPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE---TLK-----KKLSV 175 (341)
Q Consensus 116 ~s~~e~~~~aDvIilaV~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~---~l~-----~~l~~ 175 (341)
++ .+++++||+||+|||.. .+..+++++ .+++ +++++||.. +++++. .+. +..+.
T Consensus 94 td-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i-~~~l--~~g~iVV~~-STv~pgtt~~v~~~ile~~~g~ 168 (478)
T 3g79_A 94 PD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNV-GKYL--KPGMLVVLE-STITPGTTEGMAKQILEEESGL 168 (478)
T ss_dssp SC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHH-HHHC--CTTCEEEEC-SCCCTTTTTTHHHHHHHHHHCC
T ss_pred Cc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHH-Hhhc--CCCcEEEEe-CCCChHHHHHHHHHHHHHhcCC
Confidence 44 67889999999999743 367777888 8888 889888865 455542 222 22220
Q ss_pred cCCCCCCCCeEEEEcCCc--hhhh----cCceEEEEeCCCCCccHHHHHHHHHHHHhc-CC-eEEcCCCchhHHHHHhcc
Q psy316 176 LVPNPNDAPTIIRVMPNT--AMKY----GKGITGMCHDVHLDKESEHLNMAIKIMEQG-GI-VEIIPESMMNSFGAIAGS 247 (341)
Q Consensus 176 ~~~~~~~~~~vvr~mpn~--p~~v----~~g~~~l~~~~~~~~~~~~~~~v~~ll~~l-G~-~~~v~e~~~d~~~al~g~ 247 (341)
..+..+.+-.-|.. +... ..-..++..++ + +..+.++++|+.+ +. .+.+++..-..++.++.
T Consensus 169 ----~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~---~--~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~- 238 (478)
T 3g79_A 169 ----KAGEDFALAHAPERVMVGRLLKNIREHDRIVGGID---E--ASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAE- 238 (478)
T ss_dssp ----CBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEESS---H--HHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHH-
T ss_pred ----CcCCceeEEeCCccCCccchhhhhcCCcEEEEeCC---H--HHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHH-
Confidence 00112012223321 1111 01114444442 4 7779999999999 65 44454333333444432
Q ss_pred hHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHH
Q psy316 248 GCAYLFLVMDAMAD---GAVKQGIPRDMALRIGA 278 (341)
Q Consensus 248 gpa~~~~~~eal~e---a~~~~Gl~~~~a~~lv~ 278 (341)
+.|.+.-+..+.| .+.+.|++.++..+.+.
T Consensus 239 -N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~ 271 (478)
T 3g79_A 239 -NTFRDLQIAAINQLALYCEAMGINVYDVRTGVD 271 (478)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4555554444444 35699999998887665
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-11 Score=117.03 Aligned_cols=160 Identities=15% Similarity=0.106 Sum_probs=110.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC----CCCCeEEEEcCChhh-----hhhcCcC-----C--------Cc-cccChHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGL----CIPAQIIASAPSERF-----KLHWPEP-----M--------DF-ALNDNHR 120 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~----~~~~~V~v~~r~~e~-----~~~l~~~-----~--------g~-~~~s~~e 120 (341)
+.||+|||+|.||++||..|.++|+ ...++|++|.|+++. .+.+.+. | ++ .+.|..+
T Consensus 34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~ 113 (391)
T 4fgw_A 34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLID 113 (391)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHH
Confidence 4599999999999999999998863 011359999998653 2222221 1 23 5678889
Q ss_pred HhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCH---------HHHHHhccccCCCCCCCCeEEEEcC
Q psy316 121 IIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL---------ETLKKKLSVLVPNPNDAPTIIRVMP 191 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~---------~~l~~~l~~~~~~~~~~~~vvr~mp 191 (341)
+++++|+||++||.+.++++++++ ++++ .+++++|+++.|+.. +.+.+.++ .++.+-..|
T Consensus 114 al~~ad~ii~avPs~~~r~~l~~l-~~~~--~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~--------~~~~vLsGP 182 (391)
T 4fgw_A 114 SVKDVDIIVFNIPHQFLPRICSQL-KGHV--DSHVRAISCLKGFEVGAKGVQLLSSYITEELG--------IQCGALSGA 182 (391)
T ss_dssp HHTTCSEEEECSCGGGHHHHHHHH-TTTS--CTTCEEEECCCSCEEETTEEECHHHHHHHHHC--------CEEEEEECS
T ss_pred HHhcCCEEEEECChhhhHHHHHHh-cccc--CCCceeEEeccccccccccchhHHHHHHHHhC--------ccceeccCC
Confidence 999999999999999999999999 9999 888999999999752 33444444 231455679
Q ss_pred CchhhhcCce-EEEE-eCCCC-------CccHHHHHHHHHHHHhcCCeEEcCCC
Q psy316 192 NTAMKYGKGI-TGMC-HDVHL-------DKESEHLNMAIKIMEQGGIVEIIPES 236 (341)
Q Consensus 192 n~p~~v~~g~-~~l~-~~~~~-------~~~~~~~~~v~~ll~~lG~~~~v~e~ 236 (341)
+.+.++..|. +.++ ..... .+ ...+.++.+|..=-..++.+.+
T Consensus 183 s~A~EVa~~~pta~~iA~~~~~~~~~~~~~--~~a~~~~~lf~~~~frvy~s~D 234 (391)
T 4fgw_A 183 NIATEVAQEHWSETTVAYHIPKDFRGEGKD--VDHKVLKALFHRPYFHVSVIED 234 (391)
T ss_dssp CCHHHHHTTCCEEEEEECCCCTTCCCSSSS--CCHHHHHHHHCBTTEEEEEESC
T ss_pred chHHHhhcCCCceEEEEecChhhhhhhhHH--HHHHHHHHHhCCCCEEEEEeCC
Confidence 9998887763 3222 22111 11 2345678888765555666555
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.1e-11 Score=115.83 Aligned_cols=197 Identities=8% Similarity=0.042 Sum_probs=122.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc-cChHHH---------------hhcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL-NDNHRI---------------IKEA 125 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~-~s~~e~---------------~~~a 125 (341)
-..|+.|||+|.||..+|..|.++|+ +|++|||++++.+.|++. .. .. ...+++ +++|
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G~----~V~~~D~~~~kv~~L~~g-~~pi~epgl~~ll~~~~~~g~l~~ttd~~~a 84 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHGV----DVLGVDINQQTIDKLQNG-QISIEEPGLQEVYEEVLSSGKLKVSTTPEAS 84 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTC----EEEEECSCHHHHHHHHTT-CCSSCCTTHHHHHHHHHHTTCEEEESSCCCC
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHCC-CCCcCCCCHHHHHHhhcccCceEEeCchhhC
Confidence 34689999999999999999999995 999999999999988762 11 10 011111 3579
Q ss_pred CEEEEeeChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHh---ccccCCCCCCCCeEEEEc
Q psy316 126 EYVFLAMKPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKK---LSVLVPNPNDAPTIIRVM 190 (341)
Q Consensus 126 DvIilaV~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~---l~~~~~~~~~~~~vvr~m 190 (341)
|+||+|||.. .+..+.+++ .+++ +++++||.. +++++.+.++. +....+...+..+.+-.-
T Consensus 85 Dvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i-~~~l--~~g~iVV~~-STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~ 160 (431)
T 3ojo_A 85 DVFIIAVPTPNNDDQYRSCDISLVMRALDSI-LPFL--KKGNTIIVE-STIAPKTMDDFVKPVIENLGFTIGEDIYLVHC 160 (431)
T ss_dssp SEEEECCCCCBCSSSSCBBCCHHHHHHHHHH-GGGC--CTTEEEEEC-SCCCTTHHHHTHHHHHHTTTCCBTTTEEEEEC
T ss_pred CEEEEEeCCCccccccCCccHHHHHHHHHHH-HHhC--CCCCEEEEe-cCCChhHHHHHHHHHHHHcCCCcCCCeEEEEC
Confidence 9999999843 377888888 8888 889888865 57775443322 110000000122112222
Q ss_pred CCchhhhcCc---------eEEEEeCCCCCccHHHHHHHHHHHHhcCC-eEEcCCCchhHHHHHhcchHHHHHHHHHHHH
Q psy316 191 PNTAMKYGKG---------ITGMCHDVHLDKESEHLNMAIKIMEQGGI-VEIIPESMMNSFGAIAGSGCAYLFLVMDAMA 260 (341)
Q Consensus 191 pn~p~~v~~g---------~~~l~~~~~~~~~~~~~~~v~~ll~~lG~-~~~v~e~~~d~~~al~g~gpa~~~~~~eal~ 260 (341)
| .....| ..++..+ ++ +..+.++++|+.++. .+++++..-..++.++. +.|.+.-+..+.
T Consensus 161 P---e~~~~G~A~~~~~~p~~Iv~G~---~~--~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~--N~~~a~~Ia~~n 230 (431)
T 3ojo_A 161 P---ERVLPGKILEELVHNNRIIGGV---TK--ACIEAGKRVYRTFVQGEMIETDARTAEMSKLME--NTYRDVNIALAN 230 (431)
T ss_dssp C---CCCCTTSHHHHHHHSCEEEEES---SH--HHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred C---CcCCCcchhhcccCCCEEEEeC---CH--HHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3 112222 1444443 35 788999999999986 44554333333444432 455555444444
Q ss_pred H---HHHHcCCCHHHHHHHHH
Q psy316 261 D---GAVKQGIPRDMALRIGA 278 (341)
Q Consensus 261 e---a~~~~Gl~~~~a~~lv~ 278 (341)
| .+.+.|+|.++..+.+.
T Consensus 231 E~~~l~e~~GiD~~~v~~~~~ 251 (431)
T 3ojo_A 231 ELTKICNNLNINVLDVIEMAN 251 (431)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHc
Confidence 4 46799999998877654
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=119.77 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=78.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEc---CChhhhhh-cCcC--------C-C--------c--cccCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASA---PSERFKLH-WPEP--------M-D--------F--ALNDN 118 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~---r~~e~~~~-l~~~--------~-g--------~--~~~s~ 118 (341)
|+|||+|||+|+||++++..|.+ +| ++|++|+ |++++++. +++. . + + .+.++
T Consensus 1 ~~mkI~ViGaG~~G~~~a~~La~~~G----~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (404)
T 3c7a_A 1 MTVKVCVCGGGNGAHTLSGLAASRDG----VEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP 76 (404)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSTT----EEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCC----CEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence 45799999999999999999987 47 4999999 88777776 3321 0 1 1 23456
Q ss_pred HHHhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 119 HRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 119 ~e~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
.+++..+|+||+|||++.+.++++++ .+++ .++++|+++.++..++
T Consensus 77 ~~a~~~aD~Vilav~~~~~~~v~~~l-~~~l--~~~~ivv~~~~~~G~~ 122 (404)
T 3c7a_A 77 EIAISGADVVILTVPAFAHEGYFQAM-APYV--QDSALIVGLPSQAGFE 122 (404)
T ss_dssp HHHHTTCSEEEECSCGGGHHHHHHHH-TTTC--CTTCEEEETTCCTTHH
T ss_pred HHHhCCCCEEEEeCchHHHHHHHHHH-HhhC--CCCcEEEEcCCCccHH
Confidence 77888999999999999999999999 9998 8889999976666543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=115.89 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=81.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---------------cccChHHHhhcCCEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---------------ALNDNHRIIKEAEYV 128 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---------------~~~s~~e~~~~aDvI 128 (341)
+|||+|||+|.||+.++..|.++|+ +|++|+|++++++.+.+..++ ...+..+++.++|+|
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 79 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQ----SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI 79 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCC----EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEE
Confidence 3699999999999999999999984 899999999888877553221 234667778899999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecC-CCCHHHHHHhc
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLV-GVDLETLKKKL 173 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a-gi~~~~l~~~l 173 (341)
|+|||+....++++++ .+.+ +++++||++.+ +.....+.+.+
T Consensus 80 i~~v~~~~~~~~~~~l-~~~l--~~~~~vv~~~~~~~~~~~~~~~l 122 (359)
T 1bg6_A 80 LIVVPAIHHASIAANI-ASYI--SEGQLIILNPGATGGALEFRKIL 122 (359)
T ss_dssp EECSCGGGHHHHHHHH-GGGC--CTTCEEEESSCCSSHHHHHHHHH
T ss_pred EEeCCchHHHHHHHHH-HHhC--CCCCEEEEcCCCchHHHHHHHHH
Confidence 9999999999999999 8888 88888998844 33333333433
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-09 Score=111.92 Aligned_cols=153 Identities=10% Similarity=0.158 Sum_probs=117.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-----------------C---CC-ccccChHHHh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-----------------P---MD-FALNDNHRII 122 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-----------------~---~g-~~~~s~~e~~ 122 (341)
..||+|||+|.||+.||..+..+|+ +|+++|++++.+++..+ + .. +...+..+.+
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~----~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 391 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGI----SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKEL 391 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC----EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGG
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCC----chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHH
Confidence 4689999999999999999999995 99999999876553211 0 01 1222334558
Q ss_pred hcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCc
Q psy316 123 KEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKG 200 (341)
Q Consensus 123 ~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g 200 (341)
++||+||-||+- ..-++++.++ ..++ +++.|+.|.++++++..|.+.+. ...+ ++..|+-.|.....-
T Consensus 392 ~~aDlVIEAV~E~l~iK~~vf~~l-e~~~--~~~aIlASNTSsl~i~~ia~~~~------~p~r-~ig~HFfnP~~~m~L 461 (742)
T 3zwc_A 392 STVDLVVEAVFEDMNLKKKVFAEL-SALC--KPGAFLCTNTSALNVDDIASSTD------RPQL-VIGTHFFSPAHVMRL 461 (742)
T ss_dssp GSCSEEEECCCSCHHHHHHHHHHH-HHHS--CTTCEEEECCSSSCHHHHHTTSS------CGGG-EEEEECCSSTTTCCE
T ss_pred hhCCEEEEeccccHHHHHHHHHHH-hhcC--CCCceEEecCCcCChHHHHhhcC------Cccc-cccccccCCCCCCce
Confidence 899999999984 4456788998 8888 89999999999999999988776 3567 888887666655442
Q ss_pred eEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEc
Q psy316 201 ITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233 (341)
Q Consensus 201 ~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v 233 (341)
.=+..++..++ +..+.+..+.+.+|+..++
T Consensus 462 -VEvi~g~~Ts~--e~~~~~~~~~~~lgK~pV~ 491 (742)
T 3zwc_A 462 -LEVIPSRYSSP--TTIATVMSLSKKIGKIGVV 491 (742)
T ss_dssp -EEEEECSSCCH--HHHHHHHHHHHHTTCEEEE
T ss_pred -EEEecCCCCCH--HHHHHHHHHHHHhCCCCcc
Confidence 33556677777 9999999999999997543
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.5e-11 Score=108.70 Aligned_cols=121 Identities=14% Similarity=0.251 Sum_probs=89.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.++|+|||+|.||.+++..|.+.|. +|++++|++++++.+.+++|+ ...+..+.+.++|+||.|+|+....++..
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~----~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~ 204 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGA----KVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPE 204 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTC----EEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCC
T ss_pred CCEEEEECchHHHHHHHHHHHHcCC----EEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCC
Confidence 4789999999999999999999984 899999999999988877777 55577788899999999999875322111
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCce
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGI 201 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~ 201 (341)
.+..+.+ +++++|+++.. .....++.... . . ++++|+.+..++++.
T Consensus 205 ~i~~~~l--~~g~~viDv~~-~~t~ll~~a~~------~--g--~~~v~g~~mlv~q~~ 250 (275)
T 2hk9_A 205 IFNYDLI--KKDHVVVDIIY-KETKLLKKAKE------K--G--AKLLDGLPMLLWQGI 250 (275)
T ss_dssp SSCGGGC--CTTSEEEESSS-SCCHHHHHHHH------T--T--CEEECSHHHHHHHHH
T ss_pred CCCHHHc--CCCCEEEEcCC-ChHHHHHHHHH------C--c--CEEECCHHHHHHHHH
Confidence 1201346 78889999877 44444444333 1 2 367788887776653
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-08 Score=96.92 Aligned_cols=232 Identities=14% Similarity=0.086 Sum_probs=145.0
Q ss_pred CCCCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh------hhhhhcCcCCCccccChHHHhhcCCEEEEeeC
Q psy316 60 HVPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE------RFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 60 ~~~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~------e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~ 133 (341)
++.-.+||+|||+|.-|.+-|.+|.++|+ +|.+--|.. .+.++..+ .|..+.+..|+++.+|+|++-+|
T Consensus 33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv----~V~Vglr~~s~~e~~~S~~~A~~-~Gf~v~~~~eA~~~ADvV~~L~P 107 (491)
T 3ulk_A 33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGL----DISYALRKEAIAEKRASWRKATE-NGFKVGTYEELIPQADLVINLTP 107 (491)
T ss_dssp GGGTTSEEEEESCSHHHHHHHHHHHHTTC----EEEEEECHHHHHTTCHHHHHHHH-TTCEEEEHHHHGGGCSEEEECSC
T ss_pred HHHcCCEEEEeCCChHhHHHHhHHHhcCC----cEEEEeCCCCcccccchHHHHHH-CCCEecCHHHHHHhCCEEEEeCC
Confidence 34456899999999999999999999996 888877722 22333444 47755578999999999999999
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh-------cCceEEEEe
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY-------GKGITGMCH 206 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v-------~~g~~~l~~ 206 (341)
+..-.++.+++ .|++ ++++++. .+-|..+- ...+.+ +.+.. |+-+-|-.|... |.|+..+..
T Consensus 108 D~~q~~vy~~I-~p~l--k~G~~L~-faHGFnI~-----~~~i~p-p~dvd-VimVAPKgpG~~VR~~y~~G~GvP~liA 176 (491)
T 3ulk_A 108 DKQHSDVVRTV-QPLM--KDGAALG-YSHGFNIV-----EVGEQI-RKDIT-VVMVAPKCPGTEVREEYKRGFGVPTLIA 176 (491)
T ss_dssp GGGHHHHHHHH-GGGS--CTTCEEE-ESSCHHHH-----TTCCCC-CTTSE-EEEEEESSCHHHHHHHHHTTCCCCEEEE
T ss_pred hhhHHHHHHHH-HhhC--CCCCEEE-ecCccccc-----cccccc-CCCcc-eEEeCCCCCcHHHHHHHHcCCCCceEEE
Confidence 99888999999 9999 8898876 45565432 111111 14556 777778777543 667655544
Q ss_pred C---CCCCccHHHHHHHHHHHHhcCCe----EEcC---CCchhHH---HHHhcchHHHHHHHHHHHHHHHHHcCCCHHHH
Q psy316 207 D---VHLDKESEHLNMAIKIMEQGGIV----EIIP---ESMMNSF---GAIAGSGCAYLFLVMDAMADGAVKQGIPRDMA 273 (341)
Q Consensus 207 ~---~~~~~~~~~~~~v~~ll~~lG~~----~~v~---e~~~d~~---~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a 273 (341)
- .+.+- ...+........+|.. +.-+ |...|.+ +.|+| .+..++.+.-+..++.|.+++.|
T Consensus 177 VhqeqD~sG--~a~~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcG----gl~~li~agFetLveaGy~P~~a 250 (491)
T 3ulk_A 177 VHPENDPKG--EGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCG----MLQAGSLLCFDKLVEEGTDPAYA 250 (491)
T ss_dssp ECGGGCTTS--CHHHHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTH----HHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEeCCCCch--hHHHHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHcCCCHHHH
Confidence 3 22333 4566777777788742 3222 3233332 22322 33444555566678899999877
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhccccCCCChHHHHHhcCCCc
Q psy316 274 LRIGAQLLKGSGQLVHK-DLLRMDHAAQAHPAVIKDQICSPG 314 (341)
Q Consensus 274 ~~lv~~~~~gs~~l~~~-~~~~~~~~~~~~p~~l~~~v~tpg 314 (341)
..+....+.-...++.+ ++..|-. +-+++.++.+-+.+|.
T Consensus 251 ~~~~~~e~klIvdli~egGi~~M~~-siS~TAe~G~~~~~~~ 291 (491)
T 3ulk_A 251 EKLIQFGWETITEALKQGGITLMMD-RLSNPAKLRAYALSEQ 291 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHhCCHHHHHH-hcCchhhccchhhhhh
Confidence 65554433333333333 1111111 4445666655555443
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-10 Score=105.10 Aligned_cols=123 Identities=16% Similarity=0.225 Sum_probs=92.5
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHHh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~i 144 (341)
+++|||+|.||.+++..|.+.|. .+|++++|++++++.+.++++. ...+..+.+.++|+||.|+|.....+. ..+
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~---~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~-~~i 185 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGV---KDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEE-LPV 185 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC---CCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCC-CSC
T ss_pred eEEEECcHHHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCC-CCC
Confidence 89999999999999999999984 5899999999999999887765 556677888999999999974211000 011
Q ss_pred hhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEE
Q psy316 145 VNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGM 204 (341)
Q Consensus 145 ~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l 204 (341)
....+ +++++|+++..+ +...+++... .+.+ |++|+.++.+++|...+
T Consensus 186 ~~~~l--~~~~~V~Divy~-~T~ll~~A~~------~G~~---~~~~Gl~MLv~Qa~~af 233 (253)
T 3u62_A 186 SDDSL--KNLSLVYDVIYF-DTPLVVKARK------LGVK---HIIKGNLMFYYQAMENL 233 (253)
T ss_dssp CHHHH--TTCSEEEECSSS-CCHHHHHHHH------HTCS---EEECTHHHHHHHHHHHH
T ss_pred CHHHh--CcCCEEEEeeCC-CcHHHHHHHH------CCCc---EEECCHHHHHHHHHHHH
Confidence 01235 678899999888 7666665544 2222 48999999998886443
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-10 Score=107.46 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=78.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
.++|||||+|+||+.+++.|...|+ +|++|+|++++.+.+.+ +|+ .. +..+++++||+|++++|+. ..+.++
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~-~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i 228 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPFGV----QRFLYTGRQPRPEEAAE-FQAEFV-STPELAAQSDFIVVACSLTPATEGLC 228 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTC----CEEEEESSSCCHHHHHT-TTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCCCcchhHHHh-cCceeC-CHHHHHhhCCEEEEeCCCChHHHHhh
Confidence 4789999999999999999998885 89999998766555444 576 44 7888999999999999964 444444
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.++ .+.+ +++.++|+++.| ++.+.+.+.+.
T Consensus 229 ~~~~-~~~m--k~gailIn~srg~~v~~~aL~~aL~ 261 (330)
T 2gcg_A 229 NKDF-FQKM--KETAVFINISRGDVVNQDDLYQALA 261 (330)
T ss_dssp SHHH-HHHS--CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred CHHH-HhcC--CCCcEEEECCCCcccCHHHHHHHHH
Confidence 334 4456 788999998877 55677766665
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.95 E-value=4.8e-10 Score=107.16 Aligned_cols=103 Identities=11% Similarity=0.185 Sum_probs=79.8
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLI-RTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~v 140 (341)
.++|||||+|+||+++++.|. ..|. +|++|+|++++.+...+ +|+ ...+..+++++||+|++++|+. ..+.+
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~~G~----~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDvVil~vp~~~~t~~l 237 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHGLGM----KLVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHL 237 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCC----EEEEECSSCCCHHHHHH-HTCEECSSHHHHHHHCSEEEECCCCSGGGTTC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhcCC----EEEEECCCCcchhhHhh-cCcEEeCCHHHHhccCCEEEEeCCCChHHHHH
Confidence 478999999999999999998 8884 99999998765554333 466 4457888999999999999974 45555
Q ss_pred H-HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+ .++ .+.+ +++.+||+++.| ++.+.+.+.+.
T Consensus 238 i~~~~-l~~m--k~gailin~srg~~vd~~aL~~aL~ 271 (348)
T 2w2k_A 238 IDEAF-FAAM--KPGSRIVNTARGPVISQDALIAALK 271 (348)
T ss_dssp BCHHH-HHHS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hhHHH-HhcC--CCCCEEEECCCCchhCHHHHHHHHH
Confidence 4 234 4456 788999998877 56677877776
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.4e-10 Score=105.28 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=77.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~~vl- 141 (341)
.++|||||+|+||+.+++.|...|+ +|++|+|++++ +...+ +|+...+..+++++||+|++++|... .+.++
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~----~V~~~d~~~~~-~~~~~-~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~ 223 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNM----RILYYSRTRKE-EVERE-LNAEFKPLEDLLRESDFVVLAVPLTRETYHLIN 223 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCH-HHHHH-HCCEECCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCC----EEEEECCCcch-hhHhh-cCcccCCHHHHHhhCCEEEECCCCChHHHHhhC
Confidence 4789999999999999999999885 99999998766 43323 46623478888999999999999754 55555
Q ss_pred HHhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
.++ .+.+ +++.++|+++.|.. .+.+.+.+.
T Consensus 224 ~~~-~~~m--k~~ailIn~srg~~v~~~aL~~aL~ 255 (334)
T 2dbq_A 224 EER-LKLM--KKTAILINIARGKVVDTNALVKALK 255 (334)
T ss_dssp HHH-HHHS--CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHH-HhcC--CCCcEEEECCCCcccCHHHHHHHHH
Confidence 344 4556 78899999877643 346666665
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-09 Score=101.56 Aligned_cols=95 Identities=22% Similarity=0.246 Sum_probs=72.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------Cc-c-ccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------DF-A-LNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g~-~-~~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+|+||++++..|.++|+ .++|+++||++++++.+..++ .+ . ..+. +.++++|+||+++|
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~--~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~ 78 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGV--ADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLG 78 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecC
Confidence 689999999999999999999984 359999999998876554321 13 2 3455 77889999999998
Q ss_pred hHH--------------------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 134 PQY--------------------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 134 ~~~--------------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+.. +.++++.+ .++. ++.+|+..++++..
T Consensus 79 ~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i-~~~~---~~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNL-KESG---FHGVLVVISNPVDV 127 (309)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHH-HHTT---CCSEEEECSSSHHH
T ss_pred CcccCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCcEEEEEcCcHHH
Confidence 644 56777777 6654 56677767777664
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=103.63 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=75.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
.++|||||+|+||+++++.|...|. +|++|+|+++..+ |. ...+..+++++||+|++++|+. ..+.++
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~~G~----~V~~~dr~~~~~~------g~~~~~~l~ell~~aDvVil~vP~~~~t~~li 233 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEAFDC----PISYFSRSKKPNT------NYTYYGSVVELASNSDILVVACPLTPETTHII 233 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTC----CEEEECSSCCTTC------CSEEESCHHHHHHTCSEEEECSCCCGGGTTCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEECCCchhcc------CceecCCHHHHHhcCCEEEEecCCChHHHHHh
Confidence 4689999999999999999998885 8999999876432 44 4567889999999999999974 455555
Q ss_pred -HHhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
++. .+.+ +++.+||+++.|.. .+.+.+.+.
T Consensus 234 ~~~~-l~~m--k~gailIn~srG~~vd~~aL~~aL~ 266 (333)
T 3ba1_A 234 NREV-IDAL--GPKGVLINIGRGPHVDEPELVSALV 266 (333)
T ss_dssp CHHH-HHHH--CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred hHHH-HhcC--CCCCEEEECCCCchhCHHHHHHHHH
Confidence 234 4456 78899999887744 356666554
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=102.41 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=77.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~ 139 (341)
-.++|||||+|+||+++++.|...|. +|++|+| ++++. ...+ +|+ ...+..+++++||+|++++|.. ....
T Consensus 145 ~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~d~~~~~~~-~~~~-~g~~~~~~l~ell~~aDvVil~~p~~~~t~~ 218 (320)
T 1gdh_A 145 DNKTLGIYGFGSIGQALAKRAQGFDM----DIDYFDTHRASSS-DEAS-YQATFHDSLDSLLSVSQFFSLNAPSTPETRY 218 (320)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC----EEEEECSSCCCHH-HHHH-HTCEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCCCcChh-hhhh-cCcEEcCCHHHHHhhCCEEEEeccCchHHHh
Confidence 35789999999999999999998884 9999999 87652 2222 466 5557889999999999999953 3444
Q ss_pred HH-HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 140 AI-QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 140 vl-~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
++ ++. .+.+ +++.++|++..| ++.+.+.+.+.
T Consensus 219 ~i~~~~-l~~m--k~gailIn~arg~~vd~~aL~~aL~ 253 (320)
T 1gdh_A 219 FFNKAT-IKSL--PQGAIVVNTARGDLVDNELVVAALE 253 (320)
T ss_dssp CBSHHH-HTTS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hcCHHH-HhhC--CCCcEEEECCCCcccCHHHHHHHHH
Confidence 44 233 4456 789999999877 55667776665
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-09 Score=107.48 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=78.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
.++|||||+|+||+++|+.|...|. +|++|||++.. +...+ .|+ .. ++.+++++||+|++|+|+. ....++
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~a~~-~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i 214 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAFGA----YVVAYDPYVSP-ARAAQ-LGIELL-SLDDLLARADFISVHLPKTPETAGLI 214 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC----EEEEECTTSCH-HHHHH-HTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC----EEEEECCCCCh-hHHHh-cCcEEc-CHHHHHhcCCEEEECCCCchHHHHHh
Confidence 4789999999999999999999885 99999997632 33223 466 43 7889999999999999986 777776
Q ss_pred HH-hhhcccccCCCcEEEEecCCCCH--HHHHHhcc
Q psy316 142 QG-LVNDKVTLNSSRCIISMLVGVDL--ETLKKKLS 174 (341)
Q Consensus 142 ~~-i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~ 174 (341)
.+ + .+.+ +++.+||++..|-.. ..+.+.+.
T Consensus 215 ~~~~-~~~~--k~g~ilin~arg~iv~~~aL~~al~ 247 (529)
T 1ygy_A 215 DKEA-LAKT--KPGVIIVNAARGGLVDEAALADAIT 247 (529)
T ss_dssp CHHH-HTTS--CTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CHHH-HhCC--CCCCEEEECCCCchhhHHHHHHHHH
Confidence 54 5 5567 889999999876443 44556665
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.2e-09 Score=99.57 Aligned_cols=99 Identities=13% Similarity=0.242 Sum_probs=65.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
-.++|||||+|+||+++|+.+...|. +|++|+|++++. .+. ...++.+++++||+|++++|. ...+.+
T Consensus 170 ~gktiGIIGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~------~~~~~~~sl~ell~~aDvVil~vP~t~~t~~l 239 (340)
T 4dgs_A 170 KGKRIGVLGLGQIGRALASRAEAFGM----SVRYWNRSTLSG------VDWIAHQSPVDLARDSDVLAVCVAASAATQNI 239 (340)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC----EEEEECSSCCTT------SCCEECSSHHHHHHTCSEEEECC---------
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEcCCcccc------cCceecCCHHHHHhcCCEEEEeCCCCHHHHHH
Confidence 35799999999999999999998885 999999987542 234 456889999999999999994 455666
Q ss_pred H-HHhhhcccccCCCcEEEEecCCCCH--HHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGVDL--ETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~~l~ 174 (341)
+ ++. ...+ +++.++|+++.|-.. +.+.+.+.
T Consensus 240 i~~~~-l~~m--k~gailIN~aRG~vvde~aL~~aL~ 273 (340)
T 4dgs_A 240 VDASL-LQAL--GPEGIVVNVARGNVVDEDALIEALK 273 (340)
T ss_dssp -CHHH-HHHT--TTTCEEEECSCC-------------
T ss_pred hhHHH-HhcC--CCCCEEEECCCCcccCHHHHHHHHH
Confidence 5 344 4456 789999999766433 34444443
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-07 Score=93.59 Aligned_cols=199 Identities=9% Similarity=0.110 Sum_probs=117.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------------------C-c-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------------------D-F-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------------------g-~-~~~s~~e~~~~ 124 (341)
.+|+|||+|-+|..+|..|.+.|+ +|+++|.++++.+.|++.. | + .+++..+++..
T Consensus 22 ~~IaViGlGYVGLp~A~~~A~~G~----~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ 97 (444)
T 3vtf_A 22 ASLSVLGLGYVGVVHAVGFALLGH----RVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAA 97 (444)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC----EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHT
T ss_pred CEEEEEccCHHHHHHHHHHHhCCC----cEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhc
Confidence 589999999999999999999995 9999999999988875410 1 2 35567788999
Q ss_pred CCEEEEeeCh----------HHHHHHHHHhhhcccc-cCCCcEEEEecCCCCH----HHHHHhccccCCCCCCCCeEEEE
Q psy316 125 AEYVFLAMKP----------QYLDSAIQGLVNDKVT-LNSSRCIISMLVGVDL----ETLKKKLSVLVPNPNDAPTIIRV 189 (341)
Q Consensus 125 aDvIilaV~~----------~~v~~vl~~i~~~~l~-~~~~~iIVs~~agi~~----~~l~~~l~~~~~~~~~~~~vvr~ 189 (341)
+|++|+|||. ..+.++.+.+ .+++. ..++++||-- +++++ +.....+.+.. .+..+.+..
T Consensus 98 ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I-~~~l~~~~~g~lVV~e-STVppGtte~~~~~~l~~~~---~~~~f~v~~ 172 (444)
T 3vtf_A 98 TDATFIAVGTPPAPDGSADLRYVEAAARAV-GRGIRAKGRWHLVVVK-STVPPGTTEGLVARAVAEEA---GGVKFSVAS 172 (444)
T ss_dssp SSEEEECCCCCBCTTSSBCCHHHHHHHHHH-HHHHHHHCSCCEEEEC-SCCCTTTTTTHHHHHHHTTT---TTCCCEEEE
T ss_pred CCceEEEecCCCCCCCCCCcHHHHHHHHHH-HHHHhhcCCCeEEEEe-CCCCCchHHHHHHHHHHHhC---CCCCceeec
Confidence 9999999962 2477777777 76661 0245676632 33332 22223322100 112212222
Q ss_pred cC-----Cchhh-hcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEEcCCCchhHHHHHhcchHHHHH---HHHHHHH
Q psy316 190 MP-----NTAMK-YGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPESMMNSFGAIAGSGCAYLF---LVMDAMA 260 (341)
Q Consensus 190 mp-----n~p~~-v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~v~e~~~d~~~al~g~gpa~~~---~~~eal~ 260 (341)
-| ..... ...--.++..+. ++ ...+.+..+++.+...+.+....-..++.+.. ++|.+ .++..|.
T Consensus 173 ~PErl~eG~a~~d~~~~~riViG~~--~~--~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~e--N~~ravnIa~~NEla 246 (444)
T 3vtf_A 173 NPEFLREGSALEDFFKPDRIVIGAG--DE--RAASFLLDVYKAVDAPKLVMKPREAELVKYAS--NVFLALKISFANEVG 246 (444)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEEEES--SH--HHHHHHHHHTTTSCSCEEEECHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred CcccccCCccccccccCCcEEEcCC--CH--HHHHHHHHHHhccCCCEEEechhHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 23 21111 011112333322 23 56677888988887765442211122333332 23333 3566667
Q ss_pred HHHHHcCCCHHHHHHHHH
Q psy316 261 DGAVKQGIPRDMALRIGA 278 (341)
Q Consensus 261 ea~~~~Gl~~~~a~~lv~ 278 (341)
..+.+.|++..+..+.+.
T Consensus 247 ~ice~~GiDv~eV~~a~~ 264 (444)
T 3vtf_A 247 LLAKRLGVDTYRVFEAVG 264 (444)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhc
Confidence 778899999887766553
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-09 Score=100.23 Aligned_cols=88 Identities=8% Similarity=0.093 Sum_probs=70.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcCCC--c-cccChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEPMD--F-ALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~~g--~-~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.++|+|||+|+||.+++++|.+. |+ ++|++|+|++++++.+.++++ + .+.+.+++++++|+||+|+|.. .+
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~---~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~--~~ 209 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSF---KEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT--EP 209 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCC---SEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS--SC
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCC---cEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC--Cc
Confidence 36899999999999999999886 63 589999999999998877666 6 6778889999999999999852 23
Q ss_pred HHHHhhhcccccCCCcEEEEec
Q psy316 140 AIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
++. .+.+ +++++|+++.
T Consensus 210 v~~---~~~l--~~g~~vi~~g 226 (312)
T 2i99_A 210 ILF---GEWV--KPGAHINAVG 226 (312)
T ss_dssp CBC---GGGS--CTTCEEEECC
T ss_pred ccC---HHHc--CCCcEEEeCC
Confidence 332 1356 7888888763
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-09 Score=101.77 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=76.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
.++|||||+|+||+.+++.|...|. +|++|+|++++.. ..++|+ ...++++++++||+|++++|.. ..+.++
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~~~--~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li 241 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKAFGF----NVLFYDPYLSDGV--ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLI 241 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC----EEEEECTTSCTTH--HHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSB
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCC----EEEEECCCcchhh--HhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHh
Confidence 5789999999999999999998885 8999999765321 122466 5567889999999999999963 444444
Q ss_pred -HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
++. ...+ +++.++|+++.|- ..+.+.+.+.
T Consensus 242 ~~~~-l~~m--k~gailIN~arg~~vd~~aL~~aL~ 274 (347)
T 1mx3_A 242 NDFT-VKQM--RQGAFLVNTARGGLVDEKALAQALK 274 (347)
T ss_dssp SHHH-HTTS--CTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHHH-HhcC--CCCCEEEECCCChHHhHHHHHHHHH
Confidence 333 3456 7889999988763 3456666665
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-08 Score=82.54 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=66.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cChHH----HhhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---NDNHR----IIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s~~e----~~~~aDvIilaV~~~ 135 (341)
|+|.|||+|.+|..+++.|.+.|+ +|++++|++++++.+.+++++ .. .+... .+.++|+||+++|+.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~----~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 80 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGH----DIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE 80 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence 689999999999999999999884 899999999988877643454 11 12221 146899999999977
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
.....+..+ .+.+ +++++|+.. ++...
T Consensus 81 ~~~~~~~~~-~~~~--~~~~ii~~~-~~~~~ 107 (140)
T 1lss_A 81 EVNLMSSLL-AKSY--GINKTIARI-SEIEY 107 (140)
T ss_dssp HHHHHHHHH-HHHT--TCCCEEEEC-SSTTH
T ss_pred hHHHHHHHH-HHHc--CCCEEEEEe-cCHhH
Confidence 655555444 4445 566666644 44443
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.2e-09 Score=98.10 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=74.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
-.++|||||+|+||+++|+.|...|+ +|++|+|+++..+. . ...+.++++++||+|++++|. ...+.+
T Consensus 121 ~g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~------~~~~~~l~ell~~aDiV~l~~P~t~~t~~l 190 (290)
T 3gvx_A 121 YGKALGILGYGGIGRRVAHLAKAFGM----RVIAYTRSSVDQNV------DVISESPADLFRQSDFVLIAIPLTDKTRGM 190 (290)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC----EEEEECSSCCCTTC------SEECSSHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred ecchheeeccCchhHHHHHHHHhhCc----EEEEEecccccccc------ccccCChHHHhhccCeEEEEeeccccchhh
Confidence 35799999999999999999999985 99999998765432 3 445889999999999999994 444444
Q ss_pred H-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+ .+. ...+ +++.+||++..|- ..+.+.+.+.
T Consensus 191 i~~~~-l~~m--k~gailIN~aRG~~vd~~aL~~aL~ 224 (290)
T 3gvx_A 191 VNSRL-LANA--RKNLTIVNVARADVVSKPDMIGFLK 224 (290)
T ss_dssp BSHHH-HTTC--CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred hhHHH-Hhhh--hcCceEEEeehhcccCCcchhhhhh
Confidence 4 334 4556 7899999987553 3455655554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-09 Score=101.31 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=77.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~v 140 (341)
.++|||||+|+||+++++.|...|. + |++|+|++.+.+...+ .|+ ...+.++++++||+|++++|.. ..+.+
T Consensus 164 g~tvgIIG~G~IG~~vA~~l~~~G~----~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~l 238 (364)
T 2j6i_A 164 GKTIATIGAGRIGYRVLERLVPFNP----KELLYYDYQALPKDAEEK-VGARRVENIEELVAQADIVTVNAPLHAGTKGL 238 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGCC----SEEEEECSSCCCHHHHHH-TTEEECSSHHHHHHTCSEEEECCCCSTTTTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC----cEEEEECCCccchhHHHh-cCcEecCCHHHHHhcCCEEEECCCCChHHHHH
Confidence 4789999999999999999998884 6 9999998755544433 577 5568899999999999999974 44444
Q ss_pred H-HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+ ++. ...+ +++.+||++..| +..+.|.+.+.
T Consensus 239 i~~~~-l~~m--k~ga~lIn~arG~~vd~~aL~~aL~ 272 (364)
T 2j6i_A 239 INKEL-LSKF--KKGAWLVNTARGAICVAEDVAAALE 272 (364)
T ss_dssp BCHHH-HTTS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hCHHH-HhhC--CCCCEEEECCCCchhCHHHHHHHHH
Confidence 4 223 3456 788999998766 34566666665
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.5e-09 Score=97.62 Aligned_cols=103 Identities=21% Similarity=0.219 Sum_probs=75.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
..++|||||+|+||+.+++.|...|. +|++|+|++++ +...+ .|+...+.++++++||+|++++|.. ..+.++
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~d~~~~~-~~~~~-~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li 214 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANALGM----NILLYDPYPNE-ERAKE-VNGKFVDLETLLKESDVVTIHVPLVESTYHLI 214 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCH-HHHHH-TTCEECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCC----EEEEECCCCCh-hhHhh-cCccccCHHHHHhhCCEEEEecCCChHHhhhc
Confidence 34789999999999999999999885 99999998766 33333 5662237889999999999999953 234433
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++..| +..+.+.+.+.
T Consensus 215 ~~~~-l~~m--k~ga~lin~arg~~vd~~aL~~aL~ 247 (307)
T 1wwk_A 215 NEER-LKLM--KKTAILINTSRGPVVDTNALVKALK 247 (307)
T ss_dssp CHHH-HHHS--CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred CHHH-HhcC--CCCeEEEECCCCcccCHHHHHHHHH
Confidence 223 3345 788999998766 33455655554
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-09 Score=98.65 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=81.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHH---HHHH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLD---SAIQ 142 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~---~vl~ 142 (341)
+|+|||+|.||.++++.|.+.|. +|++++|++++++.+.++++....+..++ .++|+||+|+|+.... .++.
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~----~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~ 192 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGL----EVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASPLP 192 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC----CEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCSSC
T ss_pred eEEEECCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCCCC
Confidence 89999999999999999999884 89999999998887766545423456677 8999999999987432 2221
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCc
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKG 200 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g 200 (341)
.+.+ +++++|+++..+.....+.+... ... ++++++.+..++++
T Consensus 193 ---~~~l--~~g~~viD~~~~p~~t~l~~~a~-------~~g--~~~v~g~~mlv~q~ 236 (263)
T 2d5c_A 193 ---AELF--PEEGAAVDLVYRPLWTRFLREAK-------AKG--LKVQTGLPMLAWQG 236 (263)
T ss_dssp ---GGGS--CSSSEEEESCCSSSSCHHHHHHH-------HTT--CEEECSHHHHHHHH
T ss_pred ---HHHc--CCCCEEEEeecCCcccHHHHHHH-------HCc--CEEECcHHHHHHHH
Confidence 2345 67889998765422122444443 122 36778877766654
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.5e-09 Score=101.17 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=76.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
.++|||||+|+||+.+++.|...|. +|++|+|++...+...+ .|+ ...+.++++++||+|++++|. .....++
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li 238 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKPFGC----NLLYHDRLQMAPELEKE-TGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMF 238 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGCC----EEEEECSSCCCHHHHHH-HCCEECSCHHHHGGGCSEEEECSCCCTTTTTCB
T ss_pred CCEEeEEEeCHHHHHHHHHHHHCCC----EEEEeCCCccCHHHHHh-CCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhh
Confidence 5799999999999999999998885 89999998655444433 466 566899999999999999994 3333333
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.+||+++-| +..+.+.+.+.
T Consensus 239 ~~~~-l~~m--k~gailIN~aRG~~vde~aL~~aL~ 271 (351)
T 3jtm_A 239 NKEL-IGKL--KKGVLIVNNARGAIMERQAVVDAVE 271 (351)
T ss_dssp SHHH-HHHS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cHHH-HhcC--CCCCEEEECcCchhhCHHHHHHHHH
Confidence 223 3345 789999998755 34566666554
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-09 Score=101.60 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=75.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl~ 142 (341)
.++|||||+|+||+++++.|...|+ +|++|+|++++ +...+ +|+...+..+++++||+|++++|.. ..+.++.
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~G~----~V~~~d~~~~~-~~~~~-~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~ 219 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPFGV----KLYYWSRHRKV-NVEKE-LKARYMDIDELLEKSDIVILALPLTRDTYHIIN 219 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTC----EEEEECSSCCH-HHHHH-HTEEECCHHHHHHHCSEEEECCCCCTTTTTSBC
T ss_pred cCEEEEEccCHHHHHHHHHHHHCCC----EEEEECCCcch-hhhhh-cCceecCHHHHHhhCCEEEEcCCCChHHHHHhC
Confidence 4789999999999999999998885 99999998765 33222 4662237888899999999999976 5555553
Q ss_pred -HhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 143 -GLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 143 -~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
++ .+.+ +++ ++|+++.|.. .+.+.+.+.
T Consensus 220 ~~~-~~~m--k~g-ilin~srg~~vd~~aL~~aL~ 250 (333)
T 2d0i_A 220 EER-VKKL--EGK-YLVNIGRGALVDEKAVTEAIK 250 (333)
T ss_dssp HHH-HHHT--BTC-EEEECSCGGGBCHHHHHHHHH
T ss_pred HHH-HhhC--CCC-EEEECCCCcccCHHHHHHHHH
Confidence 33 3456 788 9998876644 344555554
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-09 Score=98.89 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=75.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
..++|||||+|+||+++++.|...|. +|++|+|++++.. ..+ .|+...+..+++++||+|++++|.. ....++
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~d~~~~~~~-~~~-~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li 214 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAMGM----KVLAYDILDIREK-AEK-INAKAVSLEELLKNSDVISLHVTVSKDAKPII 214 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTC----EEEEECSSCCHHH-HHH-TTCEECCHHHHHHHCSEEEECCCCCTTSCCSB
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC----EEEEECCCcchhH-HHh-cCceecCHHHHHhhCCEEEEeccCChHHHHhh
Confidence 35789999999999999999999885 9999999876642 223 5662247889999999999999953 243333
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
++. .+.+ +++.++|++..| ++.+.+.+.+.
T Consensus 215 ~~~~-l~~m--k~ga~lIn~arg~~vd~~aL~~aL~ 247 (313)
T 2ekl_A 215 DYPQ-FELM--KDNVIIVNTSRAVAVNGKALLDYIK 247 (313)
T ss_dssp CHHH-HHHS--CTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred CHHH-HhcC--CCCCEEEECCCCcccCHHHHHHHHH
Confidence 223 3345 788999998765 33456666665
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-08 Score=94.70 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=64.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeChHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
|++||||||+|+||..++..|.+.. ..++ .+++|++++++.+.+++|+ .+.+.++++. ++|+|++|+|+...
T Consensus 1 M~~rvgiIG~G~~g~~~~~~l~~~~---~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 77 (344)
T 3ezy_A 1 MSLRIGVIGLGRIGTIHAENLKMID---DAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTH 77 (344)
T ss_dssp -CEEEEEECCSHHHHHHHHHGGGST---TEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhCC---CcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcch
Confidence 6789999999999999999998753 2355 4899999999888776776 5788899887 79999999999876
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.+++...
T Consensus 78 ~~~~~~a 84 (344)
T 3ezy_A 78 SELVIAC 84 (344)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-09 Score=101.25 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=76.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
.++|||||+|+||+++++.|...|. +|++|+|++.+.+...+ +|+ ...+.++++++||+|++++|.. ..+.++
T Consensus 191 gktvGIIGlG~IG~~vA~~l~a~G~----~V~~~d~~~~~~~~~~~-~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li 265 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLAPFDV----HLHYTDRHRLPESVEKE-LNLTWHATREDMYPVCDVVTLNCPLHPETEHMI 265 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTC----EEEEECSSCCCHHHHHH-HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCC----EEEEEcCCccchhhHhh-cCceecCCHHHHHhcCCEEEEecCCchHHHHHh
Confidence 4789999999999999999998885 89999998654443333 466 4467889999999999999942 344444
Q ss_pred -HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++..|- ..+.+.+.+.
T Consensus 266 ~~~~-l~~m--k~gailIN~aRG~~vde~aL~~aL~ 298 (393)
T 2nac_A 266 NDET-LKLF--KRGAYIVNTARGKLCDRDAVARALE 298 (393)
T ss_dssp SHHH-HTTS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hHHH-HhhC--CCCCEEEECCCchHhhHHHHHHHHH
Confidence 233 4456 7899999987663 3456766665
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.9e-09 Score=87.01 Aligned_cols=88 Identities=14% Similarity=0.224 Sum_probs=68.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.++|+|||+|.||..+++.|...|+ +|++++|++++++.+.++++. ...+..+.+.++|+||.|+|.... +
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~----~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~--~ 94 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQY----KVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP--I 94 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTC----EEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC--S
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc--E
Confidence 5799999999999999999988874 699999999998887766665 456778888999999999986521 1
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
+ - ...+ +++.+++++..
T Consensus 95 ~--~-~~~l--~~g~~vid~~~ 111 (144)
T 3oj0_A 95 V--E-ERSL--MPGKLFIDLGN 111 (144)
T ss_dssp B--C-GGGC--CTTCEEEECCS
T ss_pred e--e-HHHc--CCCCEEEEccC
Confidence 1 1 2345 67788887643
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=79.53 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=67.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc---ChH---HH-hhcCCEEEEeeC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN---DNH---RI-IKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~---s~~---e~-~~~aDvIilaV~ 133 (341)
..++|.|||+|.+|..+++.|.+.|+ +|++++|++++++.+.++.|. ... +.. +. +..+|+||+|++
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~----~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGH----SVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN 93 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence 35789999999999999999999984 999999999999888733564 212 222 12 567999999999
Q ss_pred hHHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 PQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+......+..+ ...+ .+...++...++..
T Consensus 94 ~~~~~~~~~~~-~~~~--~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 94 DDSTNFFISMN-ARYM--FNVENVIARVYDPE 122 (155)
T ss_dssp CHHHHHHHHHH-HHHT--SCCSEEEEECSSGG
T ss_pred CcHHHHHHHHH-HHHH--CCCCeEEEEECCHH
Confidence 76655544444 3333 34455555555543
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.4e-08 Score=92.25 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=65.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~ 139 (341)
++||||||+|+||..++..|.+.. ..+|. +++|++++++.+.+++|+ .+.+.++++. +.|+|++|+|+....+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~---~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~ 80 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANP---DLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVD 80 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCT---TEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHH
T ss_pred ceEEEEECCcHHHHHHHHHHHhCC---CcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHH
Confidence 468999999999999999998863 23554 899999999988887888 7889999988 8999999999987777
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
++...
T Consensus 81 ~~~~a 85 (344)
T 3euw_A 81 LITRA 85 (344)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-08 Score=98.11 Aligned_cols=102 Identities=12% Similarity=0.150 Sum_probs=75.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
.++|||||+|+||+++|+.+...|. +|++|+|++.. +...+ .|+ ...+.++++++||+|++++|. ...+.++
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~~~~-~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li 233 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGM----NVLVWGRENSK-ERARA-DGFAVAESKDALFEQSDVLSVHLRLNDETRSII 233 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSHHHH-HHHHH-TTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCC----EEEEECCCCCH-HHHHh-cCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh
Confidence 5799999999999999999999885 99999998633 33333 477 566899999999999999984 3344333
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++..| +..+.|.+.+.
T Consensus 234 ~~~~-l~~m--k~gailIN~aRg~~vd~~aL~~aL~ 266 (352)
T 3gg9_A 234 TVAD-LTRM--KPTALFVNTSRAELVEENGMVTALN 266 (352)
T ss_dssp CHHH-HTTS--CTTCEEEECSCGGGBCTTHHHHHHH
T ss_pred CHHH-HhhC--CCCcEEEECCCchhhcHHHHHHHHH
Confidence 233 3456 789999998754 33455555554
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-08 Score=97.11 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=74.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
-.++|||||+|+||+.+|+.|...|. +|++|+|++...+... |+ ...+.++++++||+|++++|. .....+
T Consensus 172 ~gktvGIIGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~---g~~~~~~l~ell~~sDvV~l~~Plt~~T~~l 244 (345)
T 4g2n_A 172 TGRRLGIFGMGRIGRAIATRARGFGL----AIHYHNRTRLSHALEE---GAIYHDTLDSLLGASDIFLIAAPGRPELKGF 244 (345)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHTTTC----EEEEECSSCCCHHHHT---TCEECSSHHHHHHTCSEEEECSCCCGGGTTC
T ss_pred CCCEEEEEEeChhHHHHHHHHHHCCC----EEEEECCCCcchhhhc---CCeEeCCHHHHHhhCCEEEEecCCCHHHHHH
Confidence 35799999999999999999998885 9999999864433221 55 556899999999999999994 333333
Q ss_pred H-HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+ .+. ...+ +++.++|+++-| ++.+.|.+.+.
T Consensus 245 i~~~~-l~~m--k~gailIN~aRG~~vde~aL~~aL~ 278 (345)
T 4g2n_A 245 LDHDR-IAKI--PEGAVVINISRGDLINDDALIEALR 278 (345)
T ss_dssp BCHHH-HHHS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hCHHH-HhhC--CCCcEEEECCCCchhCHHHHHHHHH
Confidence 3 223 3345 789999998755 34566666665
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-08 Score=92.58 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=64.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCccccChHHHhh--cCCEEEEeeChHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDFALNDNHRIIK--EAEYVFLAMKPQYLDS 139 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~~~~s~~e~~~--~aDvIilaV~~~~v~~ 139 (341)
|++||||||+|+||..++..|.+.. ..++. +++|++++++.+.+++|+...+.++++. +.|+|++|+|+....+
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~---~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~ 78 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNA---DARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPTDTHAD 78 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCT---TEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred CceEEEEECCCHHHHHHHHHHhhCC---CcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCchhHHH
Confidence 6789999999999999999998853 23654 8999999998887767765567888887 7999999999987766
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
++...
T Consensus 79 ~~~~a 83 (331)
T 4hkt_A 79 LIERF 83 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=9.9e-09 Score=96.21 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=74.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~v 140 (341)
-.++|||||+|+||+++|+.|...|+ +|++|+|+++ +. +. ...+.++++++||+|++++|.. ..+.+
T Consensus 123 ~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~dr~~~--~~-----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~ 191 (303)
T 1qp8_A 123 QGEKVAVLGLGEIGTRVGKILAALGA----QVRGFSRTPK--EG-----PWRFTNSLEEALREARAAVCALPLNKHTRGL 191 (303)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTC----EEEEECSSCC--CS-----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTC
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC----EEEEECCCcc--cc-----CcccCCCHHHHHhhCCEEEEeCcCchHHHHH
Confidence 35789999999999999999999885 8999999875 21 33 4457889999999999999964 45555
Q ss_pred HH-HhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 IQ-GLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l~-~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+. +. ...+ +++.++|++..|- ..+.+.+.+.
T Consensus 192 i~~~~-l~~m--k~gailin~srg~~vd~~aL~~aL~ 225 (303)
T 1qp8_A 192 VKYQH-LALM--AEDAVFVNVGRAEVLDRDGVLRILK 225 (303)
T ss_dssp BCHHH-HTTS--CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred hCHHH-HhhC--CCCCEEEECCCCcccCHHHHHHHHH
Confidence 53 34 4556 7899999987653 3445666554
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.1e-09 Score=99.31 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=75.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl- 141 (341)
.++|||||+|+||+++++.|...|. +|++|+|++.+.+...+ +|+...+..+++++||+|++++|. .....++
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~~~~~~~-~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 219 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGWGA----TLQYHEAKALDTQTEQR-LGLRQVACSELFASSDFILLALPLNADTLHLVN 219 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTSCC----EEEEECSSCCCHHHHHH-HTEEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----EEEEECCCCCcHhHHHh-cCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhC
Confidence 5799999999999999999988885 99999998744433333 466334789999999999999994 2333333
Q ss_pred HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++..| +..+.+.+.+.
T Consensus 220 ~~~-l~~m--k~gailIN~arg~~vd~~aL~~aL~ 251 (330)
T 4e5n_A 220 AEL-LALV--RPGALLVNPCRGSVVDEAAVLAALE 251 (330)
T ss_dssp HHH-HTTS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHH-HhhC--CCCcEEEECCCCchhCHHHHHHHHH
Confidence 233 4456 789999998755 33556666665
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-08 Score=96.92 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=75.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..++|||||+|+||+.+|+.|...|. +|++|+|+++..+.+.. .....++++++++||+|++++|. ...+.++
T Consensus 136 ~gktvGIiGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li 209 (324)
T 3evt_A 136 TGQQLLIYGTGQIGQSLAAKASALGM----HVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLF 209 (324)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCB
T ss_pred cCCeEEEECcCHHHHHHHHHHHhCCC----EEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhc
Confidence 35799999999999999999999885 99999998765544322 12345788999999999999984 3444444
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++.-| +..+.|.+.+.
T Consensus 210 ~~~~-l~~m--k~gailIN~aRG~~vd~~aL~~aL~ 242 (324)
T 3evt_A 210 STEL-FQQT--KQQPMLINIGRGPAVDTTALMTALD 242 (324)
T ss_dssp SHHH-HHTC--CSCCEEEECSCGGGBCHHHHHHHHH
T ss_pred CHHH-HhcC--CCCCEEEEcCCChhhhHHHHHHHHH
Confidence 233 3446 788999998754 34566666664
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-08 Score=96.10 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=73.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
..++|||||+|+||+.+++.|...|. +|++|+|++++.+ +...+..+++++||+|++++|.. ....++
T Consensus 143 ~g~~vgIIG~G~IG~~~A~~l~~~G~----~V~~~d~~~~~~~-------~~~~~l~ell~~aDvV~l~~p~~~~t~~li 211 (311)
T 2cuk_A 143 QGLTLGLVGMGRIGQAVAKRALAFGM----RVVYHARTPKPLP-------YPFLSLEELLKEADVVSLHTPLTPETHRLL 211 (311)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCSSS-------SCBCCHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCC----EEEEECCCCcccc-------cccCCHHHHHhhCCEEEEeCCCChHHHhhc
Confidence 34789999999999999999999885 8999999876543 12346788999999999999975 455555
Q ss_pred H-HhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
. +. ...+ +++.++|++..|-. .+.+.+.+.
T Consensus 212 ~~~~-l~~m--k~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 212 NRER-LFAM--KRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp CHHH-HTTS--CTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred CHHH-HhhC--CCCcEEEECCCCCccCHHHHHHHHh
Confidence 3 33 3456 78999999876532 344555443
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.5e-09 Score=97.14 Aligned_cols=102 Identities=12% Similarity=0.206 Sum_probs=74.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl- 141 (341)
.++|||||+|+||+++|+.|...|+ +|++|+|+++..+.+.. .....+.++++++||+|++++|. ...+.++
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~ 213 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHFGM----KVLGVSRSGRERAGFDQ--VYQLPALNKMLAQADVIVSVLPATRETHHLFT 213 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCCCTTCSE--EECGGGHHHHHHTCSEEEECCCCCSSSTTSBC
T ss_pred cceEEEEEECHHHHHHHHHHHhCCC----EEEEEcCChHHhhhhhc--ccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH
Confidence 5799999999999999999999885 99999998744332211 11456788999999999999994 3444444
Q ss_pred HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++.-|- ..+.|.+.+.
T Consensus 214 ~~~-l~~m--k~gailIN~aRG~~vde~aL~~aL~ 245 (324)
T 3hg7_A 214 ASR-FEHC--KPGAILFNVGRGNAINEGDLLTALR 245 (324)
T ss_dssp TTT-TTCS--CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHH-HhcC--CCCcEEEECCCchhhCHHHHHHHHH
Confidence 233 3456 7899999987553 3455666554
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.69 E-value=7.1e-09 Score=97.68 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=74.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl- 141 (341)
.++|||||+|+||+++|+.|...|+ +|++|+|+++..+.+... ....+.++++++||+|++++|. ...+.++
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li~ 212 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAWGF----PLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGIIN 212 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTC----CEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCBS
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----EEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhcc
Confidence 5789999999999999999998885 999999987654332221 0224678899999999999994 4445544
Q ss_pred HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++.-| +..+.|.+.+.
T Consensus 213 ~~~-l~~m--k~gailIN~aRG~~vd~~aL~~aL~ 244 (315)
T 3pp8_A 213 SEL-LDQL--PDGAYVLNLARGVHVQEADLLAALD 244 (315)
T ss_dssp HHH-HTTS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHH-HhhC--CCCCEEEECCCChhhhHHHHHHHHH
Confidence 333 4456 789999998755 33556665554
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-08 Score=96.18 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl- 141 (341)
.++|||||+|+||+.+|+.|...|. +|++|+|++... ...+ .|+...+.++++++||+|++++|.. ..+.++
T Consensus 165 g~tvgIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~~-~~~~-~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 238 (335)
T 2g76_A 165 GKTLGILGLGRIGREVATRMQSFGM----KTIGYDPIISPE-VSAS-FGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLN 238 (335)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC----EEEEECSSSCHH-HHHH-TTCEECCHHHHGGGCSEEEECCCCCTTTTTSBC
T ss_pred cCEEEEEeECHHHHHHHHHHHHCCC----EEEEECCCcchh-hhhh-cCceeCCHHHHHhcCCEEEEecCCCHHHHHhhC
Confidence 4789999999999999999998884 999999986552 2223 5662247889999999999999964 344444
Q ss_pred HHhhhcccccCCCcEEEEecCCCC--HHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++..|-. .+.+.+.+.
T Consensus 239 ~~~-l~~m--k~gailIN~arg~vvd~~aL~~aL~ 270 (335)
T 2g76_A 239 DNT-FAQC--KKGVRVVNCARGGIVDEGALLRALQ 270 (335)
T ss_dssp HHH-HTTS--CTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHH-HhhC--CCCcEEEECCCccccCHHHHHHHHH
Confidence 234 4456 78999999876633 345666555
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-08 Score=95.88 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=69.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--------C--ccccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--------D--FALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--------g--~~~~s~~e~~~~aDvIilaV~~ 134 (341)
|||+|||+|+||++++..|..+|+ ..+|+++|+++++++.+..++ . +...+ .+.++++|+||++++.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~--~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGF--AREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCC
Confidence 589999999999999999999884 248999999988776543211 1 22234 4668899999999984
Q ss_pred H----------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 135 Q----------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 135 ~----------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
. .++++++.+ .++. ++.+||..++++..
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~---~~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 78 PQKPGETRLQLLGRNARVMKEIARNV-SKYA---PDSIVIVVTNPVDV 121 (319)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHH-HHHC---TTCEEEECSSSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH-HhhC---CCeEEEEeCCcHHH
Confidence 2 256777777 6654 56677767777664
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.9e-08 Score=92.44 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=61.7
Q ss_pred CCCeEEEEcccHHHH-HHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-ccChHHHh-hcCCEEEEeeChHHHH
Q psy316 63 MWTKVGFIGAGNMAQ-AVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-LNDNHRII-KEAEYVFLAMKPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~G~mG~-aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-~~s~~e~~-~~aDvIilaV~~~~v~ 138 (341)
|++||||||+|+||. .+++.|.+.. ..+|.+++|++++++.+++++|+ . ..+..+.+ .++|+|++|+|+....
T Consensus 1 m~~~igiIG~G~ig~~~~~~~l~~~~---~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~ 77 (323)
T 1xea_A 1 MSLKIAMIGLGDIAQKAYLPVLAQWP---DIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHS 77 (323)
T ss_dssp -CEEEEEECCCHHHHHTHHHHHTTST---TEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHH
Confidence 568999999999998 5999887642 24667999999999888777777 3 55555666 6899999999998777
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+++...
T Consensus 78 ~~~~~a 83 (323)
T 1xea_A 78 TLAAFF 83 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766544
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-10 Score=106.66 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=64.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHH-HHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQY-LDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~-v~~vl 141 (341)
++||+|||+|+||+.+++.|.+.+. ..-+.++++++++ .+. +|+ .+.+.++++.++|+||+|+|++. ...+.
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~--~elvav~d~~~~~--~~~--~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~ 76 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPD--MDLVGIFSRRATL--DTK--TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA 76 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSS--EEEEEEEESSSCC--SSS--SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCC--CEEEEEEcCCHHH--hhc--CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH
Confidence 4689999999999999999987641 1235689998655 333 566 66677777778999999999874 44444
Q ss_pred HHhhhcccccCCCc-EEEEecCCCCHHHH
Q psy316 142 QGLVNDKVTLNSSR-CIISMLVGVDLETL 169 (341)
Q Consensus 142 ~~i~~~~l~~~~~~-iIVs~~agi~~~~l 169 (341)
..+ ..++ +|++...+.+.+++
T Consensus 77 ~al-------~aG~~Vv~ekp~~~~~~~~ 98 (320)
T 1f06_A 77 PKF-------AQFACTVDTYDNHRDIPRH 98 (320)
T ss_dssp HHH-------TTTSEEECCCCCGGGHHHH
T ss_pred HHH-------HCCCEEEECCCCcCCHHHH
Confidence 434 3344 55555445565555
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-08 Score=92.43 Aligned_cols=111 Identities=13% Similarity=0.218 Sum_probs=79.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHHHH-H
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQYLD-S 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~v~-~ 139 (341)
.++|+|||+|+||..+++.|...|. +|++++|++++.+.+.+ +|+ . ..+..++++++|+|++++|...+. +
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~----~V~~~dr~~~~~~~~~~-~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~ 229 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGA----KVKVGARESDLLARIAE-MGMEPFHISKAAQELRDVDVCINTIPALVVTAN 229 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHH-TTSEEEEGGGHHHHTTTCSEEEECCSSCCBCHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHH-CCCeecChhhHHHHhcCCCEEEECCChHHhCHH
Confidence 4789999999999999999999884 89999999887665554 565 3 346778889999999999975432 2
Q ss_pred HHHHhhhcccccCCCcEEEEecCC---CCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVG---VDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ag---i~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
.+. .+ +++.++|++..+ ++.+. .+..+ . .+..+|+.|..+
T Consensus 230 ~l~-----~m--k~~~~lin~ar~~~~~~~~~-a~~~G--------v--~~~~~~~l~~~v 272 (293)
T 3d4o_A 230 VLA-----EM--PSHTFVIDLASKPGGTDFRY-AEKRG--------I--KALLVPGLPGIV 272 (293)
T ss_dssp HHH-----HS--CTTCEEEECSSTTCSBCHHH-HHHHT--------C--EEEECCCHHHHH
T ss_pred HHH-----hc--CCCCEEEEecCCCCCCCHHH-HHHCC--------C--EEEECCCCCccc
Confidence 222 34 678899998742 32311 11112 2 355678887755
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-08 Score=91.99 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=64.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHH-hcCCCCCCeE-EEEcCChhhhhhcCcCCC--c-cccChHHHhhc--CCEEEEeeChH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLI-RTGLCIPAQI-IASAPSERFKLHWPEPMD--F-ALNDNHRIIKE--AEYVFLAMKPQ 135 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V-~v~~r~~e~~~~l~~~~g--~-~~~s~~e~~~~--aDvIilaV~~~ 135 (341)
|++||||||+|+||..++..|. +.. ..++ .+++|++++++.+.+++| . .+.+.++++++ .|+|++|+|+.
T Consensus 1 M~~rigiIG~G~~g~~~~~~l~~~~~---~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 77 (344)
T 3mz0_A 1 MSLRIGVIGTGAIGKEHINRITNKLS---GAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGP 77 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCS---SEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred CeEEEEEECccHHHHHHHHHHHhhCC---CcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCch
Confidence 6789999999999999999998 432 2355 489999999998887788 5 67889998875 99999999998
Q ss_pred HHHHHHHHh
Q psy316 136 YLDSAIQGL 144 (341)
Q Consensus 136 ~v~~vl~~i 144 (341)
...+++...
T Consensus 78 ~h~~~~~~a 86 (344)
T 3mz0_A 78 AHESSVLKA 86 (344)
T ss_dssp GHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 776666554
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.2e-08 Score=90.93 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=64.3
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQA-VATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
++||||||+|+||.. ++..|.+.. ..++. +++|++++++.+++++|+ ...+.++++.+.|+|++|+|+....++
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~---~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~ 82 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSE---RFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEI 82 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCS---SSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHH
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCC---CeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHH
Confidence 479999999999996 888887642 23555 899999999988877788 778889999899999999999877776
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
+...
T Consensus 83 ~~~a 86 (308)
T 3uuw_A 83 IKIL 86 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-08 Score=90.37 Aligned_cols=89 Identities=13% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.++|+|||+|+||.++++.|...|. +|++++|++++.+.+.+ +|+ . ..+..++++++|+|++++|+..+.+
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~- 230 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGA----NVKVGARSSAHLARITE-MGLVPFHTDELKEHVKDIDICINTIPSMILNQ- 230 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHH-TTCEEEEGGGHHHHSTTCSEEEECCSSCCBCH-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-CCCeEEchhhHHHHhhCCCEEEECCChhhhCH-
Confidence 4789999999999999999999884 99999999987766544 465 2 3567788899999999999854322
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
+. ...+ +++.++|++..|
T Consensus 231 --~~-~~~m--k~g~~lin~a~g 248 (300)
T 2rir_A 231 --TV-LSSM--TPKTLILDLASR 248 (300)
T ss_dssp --HH-HTTS--CTTCEEEECSST
T ss_pred --HH-HHhC--CCCCEEEEEeCC
Confidence 12 2335 788899998754
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-08 Score=93.05 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=72.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHh--hcCCEEEEeeChHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRII--KEAEYVFLAMKPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~--~~aDvIilaV~~~~v~ 138 (341)
|++||||||+|+||..++..|.+.. ..++ .+++|++++++.+.+++|+ .+.+.++++ .+.|+|++|+|+....
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~---~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~ 80 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSE---KLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHA 80 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCS---SEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHH
T ss_pred CcceEEEEccCHHHHHHHHHHHhCC---CcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHH
Confidence 4579999999999999999998752 2364 5899999999988776788 778899998 4699999999987666
Q ss_pred HHHHHhhhcccccCCC-cEEEEecCCCCHHHHHH
Q psy316 139 SAIQGLVNDKVTLNSS-RCIISMLVGVDLETLKK 171 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~-~iIVs~~agi~~~~l~~ 171 (341)
+++... + ..+ ++++.---+.+.++.++
T Consensus 81 ~~~~~a----l--~~gk~vl~EKP~~~~~~~~~~ 108 (354)
T 3db2_A 81 EVIEQC----A--RSGKHIYVEKPISVSLDHAQR 108 (354)
T ss_dssp HHHHHH----H--HTTCEEEEESSSCSSHHHHHH
T ss_pred HHHHHH----H--HcCCEEEEccCCCCCHHHHHH
Confidence 655443 2 233 35554323445554433
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-08 Score=93.83 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=70.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh--hc--CcCC----Cc--cccChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL--HW--PEPM----DF--ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~--~l--~~~~----g~--~~~s~~e~~~~aDvIilaV 132 (341)
++|||+|||+|.||+.++..|..+|++ .+|++++|++++++ .+ .... .. ...+..+.+.++|+||+++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v 83 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIA--REIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITA 83 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCC--SEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--CEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECC
Confidence 347999999999999999999998842 38999999987665 22 1101 12 1222245678999999999
Q ss_pred C----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 133 K----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 133 ~----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
+ + +.++++++++ .++ .++.+|+++++|+...
T Consensus 84 ~~~~~~g~~r~~~~~~n~~~~~~~~~~i-~~~---~~~~~vi~~~Np~~~~ 130 (319)
T 1lld_A 84 GPRQKPGQSRLELVGATVNILKAIMPNL-VKV---APNAIYMLITNPVDIA 130 (319)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHH---CTTSEEEECCSSHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCceEEEecCchHHH
Confidence 4 2 2344777777 663 4778899999998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=77.62 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=65.7
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC--hHHH-----hhcCCEEEEe
Q psy316 61 VPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND--NHRI-----IKEAEYVFLA 131 (341)
Q Consensus 61 ~~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s--~~e~-----~~~aDvIila 131 (341)
..|+.+|.|||+|.+|..+++.|.+.|+ +|+++++++++.+.+.+ .|+ ...+ ..+. +.++|+||++
T Consensus 4 ~~~~~~viIiG~G~~G~~la~~L~~~g~----~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 4 VDICNHALLVGYGRVGSLLGEKLLASDI----PLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp CCCCSCEEEECCSHHHHHHHHHHHHTTC----CEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 3578899999999999999999999984 99999999999988876 465 2222 1222 4689999999
Q ss_pred eChHHHH-HHHHHhhhcccccCCCcEEEEecC
Q psy316 132 MKPQYLD-SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 132 V~~~~v~-~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+... .++..+ +. + .++..+|.-..
T Consensus 79 ~~~~~~n~~~~~~a-~~-~--~~~~~iiar~~ 106 (140)
T 3fwz_A 79 IPNGYEAGEIVASA-RA-K--NPDIEIIARAH 106 (140)
T ss_dssp CSCHHHHHHHHHHH-HH-H--CSSSEEEEEES
T ss_pred CCChHHHHHHHHHH-HH-H--CCCCeEEEEEC
Confidence 9975433 344333 33 3 34444554433
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.1e-08 Score=75.74 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=66.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c---cc---ChHHHhhcCCEEEEeeCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A---LN---DNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~---s~~e~~~~aDvIilaV~~ 134 (341)
|+++|+|+|+|.||..+++.|.+.|. ++|++++|++++++.+.. .++ . .. +..+.+..+|+||.++|+
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~---~~v~~~~r~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~ 79 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSN---YSVTVADHDLAALAVLNR-MGVATKQVDAKDEAGLAKALGGFDAVISAAPF 79 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSS---EEEEEEESCHHHHHHHHT-TTCEEEECCTTCHHHHHHHTTTCSEEEECSCG
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHh-CCCcEEEecCCCHHHHHHHHcCCCEEEECCCc
Confidence 56799999999999999999999982 489999999998887764 343 1 12 234456789999999998
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.....++... . ..+.-++.+++
T Consensus 80 ~~~~~~~~~~-~-----~~g~~~~~~~~ 101 (118)
T 3ic5_A 80 FLTPIIAKAA-K-----AAGAHYFDLTE 101 (118)
T ss_dssp GGHHHHHHHH-H-----HTTCEEECCCS
T ss_pred hhhHHHHHHH-H-----HhCCCEEEecC
Confidence 7766666554 2 23445555543
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=9.5e-08 Score=79.20 Aligned_cols=95 Identities=11% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHH
Q psy316 63 MWTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
-.++|+|||+ |+||..++++|.+.|+ +|+.++++. +.+ .|. ...+..++....|++++++|+..+
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~----~V~~vnp~~---~~i---~G~~~~~s~~el~~~vDlvii~vp~~~v 82 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGF----EVLPVNPNY---DEI---EGLKCYRSVRELPKDVDVIVFVVPPKVG 82 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEECTTC---SEE---TTEECBSSGGGSCTTCCEEEECSCHHHH
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCC----EEEEeCCCC---CeE---CCeeecCCHHHhCCCCCEEEEEeCHHHH
Confidence 4678999999 9999999999999995 777776653 222 477 777888888899999999999999
Q ss_pred HHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhc
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKL 173 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l 173 (341)
.++++++ .. . ..+.+++. .++. .+++.+..
T Consensus 83 ~~v~~~~-~~-~--g~~~i~~~-~~~~-~~~l~~~a 112 (138)
T 1y81_A 83 LQVAKEA-VE-A--GFKKLWFQ-PGAE-SEEIRRFL 112 (138)
T ss_dssp HHHHHHH-HH-T--TCCEEEEC-TTSC-CHHHHHHH
T ss_pred HHHHHHH-HH-c--CCCEEEEc-CccH-HHHHHHHH
Confidence 9999887 54 3 34445554 3444 34444443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7.7e-08 Score=90.47 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=71.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-----------CCCc-cccChHHHhhcCCEEEEe
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-----------PMDF-ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-----------~~g~-~~~s~~e~~~~aDvIila 131 (341)
.+||+|||+|.||++++..|..+|+ .+|++||+++++++.... ...+ .+.+. +.+++||+||++
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~---~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNL---ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIIT 79 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---ceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 4799999999999999999999984 279999999877664210 0122 33555 778999999999
Q ss_pred e--------------Ch--HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 132 M--------------KP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 132 V--------------~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+ +. ..++++++++ .++. ++.+++..+++...
T Consensus 80 vg~p~~~g~~r~d~~~~~~~i~~~i~~~i-~~~~---~~~iii~~sNp~~~ 126 (317)
T 2ewd_A 80 ASIPGRPKDDRSELLFGNARILDSVAEGV-KKYC---PNAFVICITNPLDV 126 (317)
T ss_dssp CCCSSCCSSCGGGGHHHHHHHHHHHHHHH-HHHC---TTSEEEECCSSHHH
T ss_pred CCCCCCCCCcHHHHHHhhHHHHHHHHHHH-HHHC---CCcEEEEeCChHHH
Confidence 9 31 3467888888 7765 57888888776553
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-08 Score=94.76 Aligned_cols=103 Identities=14% Similarity=0.206 Sum_probs=74.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
-.++|||||+|+||+.+|+.+...|. +|++|+|++. .+...+ .|+...+.++++++||+|++++|.. ..+.++
T Consensus 175 ~gktvGIIGlG~IG~~vA~~l~~fG~----~V~~~d~~~~-~~~~~~-~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 248 (365)
T 4hy3_A 175 AGSEIGIVGFGDLGKALRRVLSGFRA----RIRVFDPWLP-RSMLEE-NGVEPASLEDVLTKSDFIFVVAAVTSENKRFL 248 (365)
T ss_dssp SSSEEEEECCSHHHHHHHHHHTTSCC----EEEEECSSSC-HHHHHH-TTCEECCHHHHHHSCSEEEECSCSSCC---CC
T ss_pred CCCEEEEecCCcccHHHHHhhhhCCC----EEEEECCCCC-HHHHhh-cCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhc
Confidence 35799999999999999999988774 9999999853 233333 4663457899999999999999853 444444
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|+++-| ++.+.|.+.+.
T Consensus 249 ~~~~-l~~m--k~gailIN~aRG~~vde~aL~~aL~ 281 (365)
T 4hy3_A 249 GAEA-FSSM--RRGAAFILLSRADVVDFDALMAAVS 281 (365)
T ss_dssp CHHH-HHTS--CTTCEEEECSCGGGSCHHHHHHHHH
T ss_pred CHHH-HhcC--CCCcEEEECcCCchhCHHHHHHHHH
Confidence 233 3446 789999998754 34566666665
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.9e-08 Score=93.36 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=73.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~vl 141 (341)
.++|||||+|+||+++++.+...|. +|++|+|++++. +.+ . + ...+..+++++||+|++++|.. ..+.++
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~d~~~~~~--~~~-~-~~~~~~l~ell~~aDvV~l~~p~~~~t~~li 217 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGFGA----KVITYDIFRNPE--LEK-K-GYYVDSLDDLYKQADVISLHVPDVPANVHMI 217 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCHH--HHH-T-TCBCSCHHHHHHHCSEEEECSCCCGGGTTCB
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCC----EEEEECCCcchh--HHh-h-CeecCCHHHHHhhCCEEEEcCCCcHHHHHHH
Confidence 4789999999999999999999885 999999987653 111 2 3 3347889999999999999953 344444
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
++. ...+ +++.++|++..| +..+.+.+.+.
T Consensus 218 ~~~~-l~~m--k~ga~lIn~arg~~vd~~aL~~aL~ 250 (333)
T 1j4a_A 218 NDES-IAKM--KQDVVIVNVSRGPLVDTDAVIRGLD 250 (333)
T ss_dssp SHHH-HHHS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hHHH-HhhC--CCCcEEEECCCCcccCHHHHHHHHH
Confidence 223 3345 788999998765 34566666665
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=89.71 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeChHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
|++||||||+|+||..+++.|.+.... ..+ +.+++|++++++.+++++|+ ...|.++++. +.|+|++|+|+...
T Consensus 1 M~~rigiiG~G~ig~~~~~~l~~~~~~-~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 79 (334)
T 3ohs_X 1 MALRWGIVSVGLISSDFTAVLQTLPRS-EHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH 79 (334)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSCTT-TEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred CccEEEEECchHHHHHHHHHHHhCCCC-CeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence 678999999999999999988765310 123 56899999999988877787 5788899887 69999999998766
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.+++...
T Consensus 80 ~~~~~~a 86 (334)
T 3ohs_X 80 KAAVMLC 86 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665444
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=85.32 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=61.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCccccChHHHh-hcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDFALNDNHRII-KEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~~~~s~~e~~-~~aDvIilaV~~~~v~~vl~ 142 (341)
|||||||+|+||..+++.|.+.|+ ++ .+|||++ +.+. .+.+.++++ .++|+||+|+|++...+++.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~----~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~ 68 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGF----EIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKDYAE 68 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCC----EEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHHHHH
Confidence 589999999999999999998774 76 7999984 3222 345778888 68999999999987777765
Q ss_pred HhhhcccccCCCcEEEEecC
Q psy316 143 GLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~a 162 (341)
.. + ..++.|++...
T Consensus 69 ~~----l--~~G~~vv~~~~ 82 (236)
T 2dc1_A 69 KI----L--KAGIDLIVLST 82 (236)
T ss_dssp HH----H--HTTCEEEESCG
T ss_pred HH----H--HCCCcEEEECc
Confidence 44 3 45666666543
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=90.71 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=65.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~ 139 (341)
++||||||+|+||..++..|.+.. +..++ .+++|++++++.+.+++|+ .+.+.+++++ +.|+|++|+|+....+
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~--~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 90 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHA--DRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPT 90 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTT--TTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHH
T ss_pred cceEEEEcCcHHHHHHHHHHHhCC--CCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 468999999999999999998871 12354 5899999999988877788 7889999887 7999999999987666
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
++...
T Consensus 91 ~~~~a 95 (354)
T 3q2i_A 91 QSIEC 95 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=89.45 Aligned_cols=78 Identities=10% Similarity=0.124 Sum_probs=64.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
++||||||+|+||..+++.|.+.. ..+|. +++|++++++.+.+++|+ .+.+.++++. +.|+|++|+|+....
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~---~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 81 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESA---QAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHY 81 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSS---SEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHH
T ss_pred eEEEEEECchHHHHHHHHHHHhCC---CcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHH
Confidence 368999999999999999998853 23554 899999999888877787 5788889887 799999999998766
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+++...
T Consensus 82 ~~~~~a 87 (330)
T 3e9m_A 82 SAAKLA 87 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=79.55 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=70.7
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++|+|||+ |+||..++++|.+.|+ +|+.+|++.. .+.+ .|+ ...+..++....|++++++|+..+.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~----~v~~vnp~~~-g~~i---~G~~~~~sl~el~~~~Dlvii~vp~~~v~ 84 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGY----HVIPVSPKVA-GKTL---LGQQGYATLADVPEKVDMVDVFRNSEAAW 84 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTC----CEEEECSSST-TSEE---TTEECCSSTTTCSSCCSEEECCSCSTHHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCC----EEEEeCCccc-cccc---CCeeccCCHHHcCCCCCEEEEEeCHHHHH
Confidence 578999999 8999999999999995 6777766531 0122 477 6677788778899999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
++++++ .. . ..+.+++. .++. .+++.+...
T Consensus 85 ~v~~~~-~~-~--g~~~i~i~-~~~~-~~~l~~~a~ 114 (145)
T 2duw_A 85 GVAQEA-IA-I--GAKTLWLQ-LGVI-NEQAAVLAR 114 (145)
T ss_dssp HHHHHH-HH-H--TCCEEECC-TTCC-CHHHHHHHH
T ss_pred HHHHHH-HH-c--CCCEEEEc-CChH-HHHHHHHHH
Confidence 999887 54 3 44556664 3333 455555554
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=7.4e-08 Score=91.69 Aligned_cols=100 Identities=27% Similarity=0.318 Sum_probs=72.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl- 141 (341)
.++|||||+|+||+.+|+.+...|. +|++|+|+++. .+ + .++...+.++++++||+|++++|. .....++
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~--~~-~-~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~ 219 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSAMGA----KVIAYDVAYNP--EF-E-PFLTYTDFDTVLKEADIVSLHTPLFPSTENMIG 219 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCG--GG-T-TTCEECCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred CCeEEEEecCHHHHHHHHHHhhCCC----EEEEECCChhh--hh-h-ccccccCHHHHHhcCCEEEEcCCCCHHHHHHhh
Confidence 4799999999999999999999885 99999998754 11 1 134233889999999999999994 2333333
Q ss_pred HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++.-| +..+.|.+.+.
T Consensus 220 ~~~-l~~m--k~gailIN~aRg~~vd~~aL~~aL~ 251 (343)
T 2yq5_A 220 EKQ-LKEM--KKSAYLINCARGELVDTGALIKALQ 251 (343)
T ss_dssp HHH-HHHS--CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred HHH-HhhC--CCCcEEEECCCChhhhHHHHHHHHH
Confidence 222 3345 789999998755 33556666554
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.6e-08 Score=93.26 Aligned_cols=100 Identities=13% Similarity=0.176 Sum_probs=74.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~v 140 (341)
-.++|||||+|+||+.+|+.+...|. +|++|||+++.. . .++ ...++++++++||+|++++|.. ..+.+
T Consensus 144 ~gktlGiIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~~----~-~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~l 214 (404)
T 1sc6_A 144 RGKKLGIIGYGHIGTQLGILAESLGM----YVYFYDIENKLP----L-GNATQVQHLSDLLNMSDVVSLHVPENPSTKNM 214 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCCC----C-TTCEECSCHHHHHHHCSEEEECCCSSTTTTTC
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC----EEEEEcCCchhc----c-CCceecCCHHHHHhcCCEEEEccCCChHHHHH
Confidence 35789999999999999999999885 999999975421 1 134 5568899999999999999964 44444
Q ss_pred H-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+ .+. ...+ +++.++|+++.|- ..+.+.+.+.
T Consensus 215 i~~~~-l~~m--k~ga~lIN~aRg~~vd~~aL~~aL~ 248 (404)
T 1sc6_A 215 MGAKE-ISLM--KPGSLLINASRGTVVDIPALADALA 248 (404)
T ss_dssp BCHHH-HHHS--CTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred hhHHH-Hhhc--CCCeEEEECCCChHHhHHHHHHHHH
Confidence 4 223 3345 7899999987664 3456666665
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=91.03 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=71.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-H----HH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-Y----LD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~----v~ 138 (341)
.++|||||+|+||+.+|+.|...|. +|.+|||+.+... .+....+.++++++||+|++++|.. . ..
T Consensus 119 gktvGIIGlG~IG~~vA~~l~a~G~----~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~ 189 (381)
T 3oet_A 119 DRTIGIVGVGNVGSRLQTRLEALGI----RTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTL 189 (381)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTC----EEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCT
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCC----EEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCccccccch
Confidence 4789999999999999999999985 9999998654322 1224568899999999999999843 2 22
Q ss_pred HHH-HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 139 SAI-QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 139 ~vl-~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.++ .+. ...+ +++.++|+++-| ++.+.|.+.+.
T Consensus 190 ~li~~~~-l~~m--k~gailIN~aRG~vvde~aL~~aL~ 225 (381)
T 3oet_A 190 HLADETL-IRRL--KPGAILINACRGPVVDNAALLARLN 225 (381)
T ss_dssp TSBCHHH-HHHS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hhcCHHH-HhcC--CCCcEEEECCCCcccCHHHHHHHHH
Confidence 233 222 2335 789999998755 33556666554
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-07 Score=86.73 Aligned_cols=77 Identities=9% Similarity=0.163 Sum_probs=61.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeChHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v~~ 139 (341)
+||||||+|+||..++..|.+.+. .+ +.+++|++++++.+.+++|+ .+.+.++++. +.|+|++|+|+....+
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~---~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 82 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGN---GEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYK 82 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCS---EEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred eEEEEEechHHHHHHHHHHHhCCC---cEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 689999999999999999987642 34 45899999999998887887 5788899987 7999999999987666
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
++...
T Consensus 83 ~~~~a 87 (329)
T 3evn_A 83 VAKAA 87 (329)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.1e-07 Score=86.33 Aligned_cols=76 Identities=12% Similarity=0.216 Sum_probs=61.6
Q ss_pred CeEEEEcccHHHHHH-HHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQAV-ATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~ai-a~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
+||||||+|+||..+ +..|.+.+. ++ .+++|++++++.+.+++|+ ...+.++++. ++|+|++|+|+....
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~----~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~ 76 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGG----EVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHR 76 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTC----EEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCC----eEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhH
Confidence 589999999999998 888887543 54 5899999998888776776 5678888886 599999999998776
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+++...
T Consensus 77 ~~~~~a 82 (332)
T 2glx_A 77 EQTLAA 82 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-07 Score=90.84 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-----HH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-----LD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-----v~ 138 (341)
.++|||||+|+||+.+++.|...|. +|++|+|+++.. . .+....+.++++++||+|++++|... ..
T Consensus 116 g~tvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~~----~-~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~ 186 (380)
T 2o4c_A 116 ERTYGVVGAGQVGGRLVEVLRGLGW----KVLVCDPPRQAR----E-PDGEFVSLERLLAEADVISLHTPLNRDGEHPTR 186 (380)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTC----EEEEECHHHHHH----S-TTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCC----EEEEEcCChhhh----c-cCcccCCHHHHHHhCCEEEEeccCccccccchh
Confidence 4789999999999999999999885 999999876543 1 24334578899999999999998533 33
Q ss_pred HHH-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 139 SAI-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 139 ~vl-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
.++ .+. ...+ +++.++|+++.|- ..+.+.+.+.
T Consensus 187 ~li~~~~-l~~m--k~gailIN~sRG~vvd~~aL~~aL~ 222 (380)
T 2o4c_A 187 HLLDEPR-LAAL--RPGTWLVNASRGAVVDNQALRRLLE 222 (380)
T ss_dssp TSBCHHH-HHTS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred hhcCHHH-HhhC--CCCcEEEECCCCcccCHHHHHHHHH
Confidence 333 233 3445 7889999887653 3456666665
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=88.45 Aligned_cols=77 Identities=12% Similarity=0.181 Sum_probs=63.3
Q ss_pred CeEEEEcccHHHH-HHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHH
Q psy316 65 TKVGFIGAGNMAQ-AVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~G~mG~-aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~ 139 (341)
+||||||+|.||. .++..|.+.. ..+| .+++|++++++.+.+++|+ ...+.++++. +.|+|++|+|+....+
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~~---~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 104 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAEP---LTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAE 104 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCT---TEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHH
T ss_pred eEEEEEcCcHHHHHHHHHHHHhCC---CeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 6899999999998 7899998863 2355 4899999999988877888 6688899886 5899999999987666
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
++...
T Consensus 105 ~~~~a 109 (350)
T 3rc1_A 105 WIDRA 109 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-07 Score=89.45 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl- 141 (341)
.++|||||+|+||+.+++.+...|. +|++|+|++++. + ++ .+...+.++++++||+|++++|.. ..+.++
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~d~~~~~~--~-~~-~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~ 216 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGFGA----KVIAYDPYPMKG--D-HP-DFDYVSLEDLFKQSDVIDLHVPGIEQNTHIIN 216 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCSS--C-CT-TCEECCHHHHHHHCSEEEECCCCCGGGTTSBC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCCcchh--h-Hh-ccccCCHHHHHhcCCEEEEcCCCchhHHHHhC
Confidence 4789999999999999999999885 999999987543 2 22 232337889999999999999953 343333
Q ss_pred HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|.+..|- +.+.+.+.+.
T Consensus 217 ~~~-l~~m--k~ga~lIn~srg~~vd~~aL~~aL~ 248 (333)
T 1dxy_A 217 EAA-FNLM--KPGAIVINTARPNLIDTQAMLSNLK 248 (333)
T ss_dssp HHH-HHHS--CTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred HHH-HhhC--CCCcEEEECCCCcccCHHHHHHHHH
Confidence 223 3345 7888999887653 3566766665
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.2e-07 Score=74.60 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=64.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cChHHH----hhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---NDNHRI----IKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s~~e~----~~~aDvIilaV~~ 134 (341)
+++|.|+|+|.+|..+++.|.+.|+ +|+++++++++++.+.+. +. .. .+...+ +.++|+||+++++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~----~V~~id~~~~~~~~~~~~-~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~ 80 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK----KVLAVDKSKEKIELLEDE-GFDAVIADPTDESFYRSLDLEGVSAVLITGSD 80 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC----CEEEEESCHHHHHHHHHT-TCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----eEEEEECCHHHHHHHHHC-CCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence 4689999999999999999999984 999999999998887663 54 21 222211 3579999999996
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHH
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETL 169 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l 169 (341)
....-.+... ...+ ....+++........+.+
T Consensus 81 ~~~n~~~~~~-a~~~--~~~~iia~~~~~~~~~~l 112 (141)
T 3llv_A 81 DEFNLKILKA-LRSV--SDVYAIVRVSSPKKKEEF 112 (141)
T ss_dssp HHHHHHHHHH-HHHH--CCCCEEEEESCGGGHHHH
T ss_pred HHHHHHHHHH-HHHh--CCceEEEEEcChhHHHHH
Confidence 5443333333 2334 433455544333223444
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.9e-07 Score=85.28 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
+++||||||+|+||..+++.|.+.+ ..+ +.+++|++++++.+.++ + ...+.+++++ ++|+|++|+|+....
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~---~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~tp~~~h~ 83 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLP---GAALVRLASSNPDNLALVPPG--CVIESDWRSVVSAPEVEAVIIATPPATHA 83 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCT---TEEEEEEEESCHHHHTTCCTT--CEEESSTHHHHTCTTCCEEEEESCGGGHH
T ss_pred CcceEEEECCcHHHHHHHHHHHhCC---CcEEEEEEeCCHHHHHHHHhh--CcccCCHHHHhhCCCCCEEEEeCChHHHH
Confidence 4579999999999999999998853 135 56999999999888774 5 6678888885 799999999998777
Q ss_pred HHHHHhhhcccccCCCc-EEEEecCCCCHHHHHH
Q psy316 139 SAIQGLVNDKVTLNSSR-CIISMLVGVDLETLKK 171 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~-iIVs~~agi~~~~l~~ 171 (341)
+++... + ..++ +++.---..+.++.++
T Consensus 84 ~~~~~a----l--~~Gk~v~~eKP~~~~~~~~~~ 111 (315)
T 3c1a_A 84 EITLAA----I--ASGKAVLVEKPLTLDLAEAEA 111 (315)
T ss_dssp HHHHHH----H--HTTCEEEEESSSCSCHHHHHH
T ss_pred HHHHHH----H--HCCCcEEEcCCCcCCHHHHHH
Confidence 776554 2 3444 5543222345554443
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-07 Score=90.63 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=72.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
.++|||||+|+||+.+|+.+...|. +|++|||++.. .. .+. ...++++++++||+|++++|. ...+.++
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~G~----~V~~yd~~~~~----~~-~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li 226 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESLGM----TVRYYDTSDKL----QY-GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLI 226 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECTTCCC----CB-TTBEECSSHHHHHHHCSEEEECCCC-----CCB
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----EEEEECCcchh----cc-cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhc
Confidence 5799999999999999999999885 99999997432 11 134 556899999999999999995 3344444
Q ss_pred -HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|+++-|- ..+.+.+.+.
T Consensus 227 ~~~~-l~~m--k~gailIN~aRG~vvd~~aL~~aL~ 259 (416)
T 3k5p_A 227 TEAK-LRKM--KKGAFLINNARGSDVDLEALAKVLQ 259 (416)
T ss_dssp CHHH-HHHS--CTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CHHH-HhhC--CCCcEEEECCCChhhhHHHHHHHHH
Confidence 223 3345 7899999987653 3566666665
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-07 Score=86.88 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=63.0
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hcCCCCCCeE-EEEcCChhhhhhcCcCCC--c-cccChHHHhh--cCCEEEEeeChHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLI-RTGLCIPAQI-IASAPSERFKLHWPEPMD--F-ALNDNHRIIK--EAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~V-~v~~r~~e~~~~l~~~~g--~-~~~s~~e~~~--~aDvIilaV~~~~ 136 (341)
++||||||+|+||..++..|. +.. ..++ .+++|++++++.+.+++| . ...+.++++. +.|+|++|+|+..
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~---~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 99 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVS---GVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEA 99 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCT---TEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCC---CcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 469999999999999999998 432 2355 489999999988877777 5 6788899887 5899999999987
Q ss_pred HHHHHHHh
Q psy316 137 LDSAIQGL 144 (341)
Q Consensus 137 v~~vl~~i 144 (341)
..+++...
T Consensus 100 h~~~~~~a 107 (357)
T 3ec7_A 100 HADVAVAA 107 (357)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=89.51 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=73.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~vl- 141 (341)
.++|||||+|+||+.+++.+...|. +|++|+|++++. + ++ .+...+..+++++||+|++++|.. ..+.++
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~d~~~~~~--~-~~-~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~ 217 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGMGA----TVIGEDVFEIKG--I-ED-YCTQVSLDEVLEKSDIITIHAPYIKENGAVVT 217 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCCS--C-TT-TCEECCHHHHHHHCSEEEECCCCCTTTCCSBC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC----EEEEECCCccHH--H-Hh-ccccCCHHHHHhhCCEEEEecCCchHHHHHhC
Confidence 4789999999999999999999885 899999987543 2 22 232347889999999999999853 333333
Q ss_pred HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|++..| ++.+.+.+.+.
T Consensus 218 ~~~-l~~m--k~ga~lin~srg~~vd~~aL~~aL~ 249 (331)
T 1xdw_A 218 RDF-LKKM--KDGAILVNCARGQLVDTEAVIEAVE 249 (331)
T ss_dssp HHH-HHTS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHH-HhhC--CCCcEEEECCCcccccHHHHHHHHH
Confidence 223 3345 788999988755 34566666665
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-08 Score=93.20 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=67.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----C--c-cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----D--F-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g--~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
++|+|||+|.||.+++.+|.... +..+|++|+|++++++.+.+++ | + .+.+.++++.++|+||+|+|....
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~--~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~~ 207 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHL--GIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAY 207 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHS--CCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSSE
T ss_pred CeEEEECCcHHHHHHHHHHHHhC--CCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCCC
Confidence 68999999999999999986532 1368999999999988876543 5 3 467888999999999999997532
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
..++. ...+ ++++.|+.+
T Consensus 208 ~pvl~---~~~l--~~G~~V~~v 225 (350)
T 1x7d_A 208 ATIIT---PDML--EPGMHLNAV 225 (350)
T ss_dssp EEEEC---GGGC--CTTCEEEEC
T ss_pred Cceec---HHHc--CCCCEEEEC
Confidence 22321 2345 678777765
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.6e-07 Score=85.04 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=62.2
Q ss_pred CCeEEEEcccHHHHHHHHHHH-hcCCCCCCe-EEEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLI-RTGLCIPAQ-IIASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~-~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
++||||||+|+||..++..|. +.. ..+ +.++++++++++.+.+++|+ ...+..+++. ++|+|++|+|+...
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~---~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h 84 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQ---GVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH 84 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCS---SEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCC---CcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH
Confidence 468999999999999999988 432 235 46899999999888777777 5678888886 69999999998876
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.+++...
T Consensus 85 ~~~~~~a 91 (346)
T 3cea_A 85 PEMTIYA 91 (346)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665444
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-07 Score=87.14 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=68.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC----c-------CCCc-cccChHHHhhcCCEEE
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP----E-------PMDF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~----~-------~~g~-~~~s~~e~~~~aDvIi 129 (341)
+|++||+|||+|.||.+++..|...|+ .+|.+||+++++++... . ...+ .+.+. +.+++||+||
T Consensus 12 ~~~~kI~ViGaG~vG~~iA~~la~~g~---~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI 87 (328)
T 2hjr_A 12 IMRKKISIIGAGQIGSTIALLLGQKDL---GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVI 87 (328)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEE
Confidence 366899999999999999999999885 26999999987766321 1 0013 33565 7789999999
Q ss_pred Eee--Ch--------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 130 LAM--KP--------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 130 laV--~~--------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+++ |. ..++++++++ .++. ++.+++-.++.++
T Consensus 88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i-~~~~---p~a~viv~tNP~~ 135 (328)
T 2hjr_A 88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENV-GKYC---PNAFVICITNPLD 135 (328)
T ss_dssp ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHH-HHHC---TTCEEEECCSSHH
T ss_pred EcCCCCCCCCCchhhHHhhhHHHHHHHHHHH-HHHC---CCeEEEEecCchH
Confidence 998 32 2356677777 6654 5666665556444
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.5e-07 Score=80.25 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=64.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cCh---HHH-hhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---NDN---HRI-IKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s~---~e~-~~~aDvIilaV~~~ 135 (341)
|||.|||+|.+|..+++.|.+.|+ +|+++++++++++.+.++.+. .. .+. .++ +.++|+||++++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~----~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 76 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKY----GVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD 76 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTC----CEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----eEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc
Confidence 689999999999999999999984 999999999998877653443 21 222 222 56899999999987
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.....+..+ ...+ .+..-+|..+.
T Consensus 77 ~~n~~~~~~-a~~~--~~~~~iia~~~ 100 (218)
T 3l4b_C 77 EVNLFIAQL-VMKD--FGVKRVVSLVN 100 (218)
T ss_dssp HHHHHHHHH-HHHT--SCCCEEEECCC
T ss_pred HHHHHHHHH-HHHH--cCCCeEEEEEe
Confidence 665555444 3332 34444444433
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-07 Score=85.07 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=68.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------C--C--c-cccChHHHhhcCCEEEE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------M--D--F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~--g--~-~~~s~~e~~~~aDvIil 130 (341)
++|||+|||+|.||++++..|...|+ .+|.+||+++++++....+ + . + .+.+.++.+++||+||+
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g~---~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~ 84 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALREL---ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV 84 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC---CeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEE
Confidence 34799999999999999999999884 2699999998766642110 1 1 2 34677778999999999
Q ss_pred ee--C--hHH-----------------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 131 AM--K--PQY-----------------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 131 aV--~--~~~-----------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
++ | +.. ++++++++ .++. ++.+++..++.++
T Consensus 85 a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i-~~~~---p~a~vi~~tNP~~ 136 (331)
T 1pzg_A 85 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI-KKYC---PKTFIIVVTNPLD 136 (331)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHH-HHHC---TTCEEEECCSSHH
T ss_pred ccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH-HHHC---CCcEEEEEcCchH
Confidence 98 4 211 56677777 6654 6667665555544
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=83.76 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=62.1
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc--cccChHHHhhc--CCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF--ALNDNHRIIKE--AEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~--aDvIilaV~~~~v~ 138 (341)
+||||||+|+||.. +++.|.+.. ..++. +++|++++++.++++++. .+.+.++++++ .|+|++|+|+....
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~~---~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 82 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQMQ---DIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF 82 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTCT---TEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCC---CcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 68999999999985 888887752 23554 899999999999887754 67889999875 59999999998766
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+++...
T Consensus 83 ~~~~~a 88 (359)
T 3m2t_A 83 EMGLLA 88 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.41 E-value=6.4e-07 Score=83.88 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=68.3
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+||||||+|+||.. ++..|.+.. ..++. +++|++++++.+.+++|+ ...+.+++..++|+|++|+|+....+++
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~---~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~ 82 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAAS---DWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVV 82 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCS---SEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCC---CeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHH
Confidence 68999999999996 888887642 23654 999999998887776677 6667766656899999999987766666
Q ss_pred HHhhhcccccCCCc-EEEEecCCCCHHHHH
Q psy316 142 QGLVNDKVTLNSSR-CIISMLVGVDLETLK 170 (341)
Q Consensus 142 ~~i~~~~l~~~~~~-iIVs~~agi~~~~l~ 170 (341)
... + ..++ +++.---+.+.++.+
T Consensus 83 ~~a----l--~~G~~v~~eKP~~~~~~~~~ 106 (319)
T 1tlt_A 83 STL----L--NAGVHVCVDKPLAENLRDAE 106 (319)
T ss_dssp HHH----H--HTTCEEEEESSSCSSHHHHH
T ss_pred HHH----H--HcCCeEEEeCCCCCCHHHHH
Confidence 544 2 3444 554322344555433
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.7e-07 Score=76.06 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cCh---HHH--hhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEPMDF--AL---NDN---HRI--IKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s~---~e~--~~~aDvIilaV 132 (341)
.++|.|||+|.||..+++.|.+. |+ +|+++++++++.+.+.+ .|+ .. .+. .++ +.++|+||+++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~----~V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK----ISLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS----CEEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC----eEEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence 56899999999999999999998 84 89999999999888765 465 22 222 222 56799999999
Q ss_pred ChHH-HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 133 KPQY-LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 133 ~~~~-v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.. ...++..+ +. + .++..|+....
T Consensus 114 ~~~~~~~~~~~~~-~~-~--~~~~~ii~~~~ 140 (183)
T 3c85_A 114 PHHQGNQTALEQL-QR-R--NYKGQIAAIAE 140 (183)
T ss_dssp SSHHHHHHHHHHH-HH-T--TCCSEEEEEES
T ss_pred CChHHHHHHHHHH-HH-H--CCCCEEEEEEC
Confidence 8643 34444443 33 3 43444444433
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=82.47 Aligned_cols=76 Identities=8% Similarity=0.018 Sum_probs=61.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~v 140 (341)
+||||||+|.||...+..|.+.. ..+| .++++++++++.. +++|+ .+.|.++++. +.|+|++|+|+....++
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~---~~~l~av~d~~~~~~~~a-~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 81 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAAD---NLEVHGVFDILAEKREAA-AQKGLKIYESYEAVLADEKVDAVLIATPNDSHKEL 81 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTST---TEEEEEEECSSHHHHHHH-HTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHhCC---CcEEEEEEcCCHHHHHHH-HhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 68999999999999999888763 2355 4889999988754 44788 7889999987 78999999998776666
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
+...
T Consensus 82 ~~~a 85 (359)
T 3e18_A 82 AISA 85 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.2e-07 Score=83.44 Aligned_cols=96 Identities=18% Similarity=0.292 Sum_probs=66.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc----CcCC----Cc-cccChHHHhhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW----PEPM----DF-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l----~~~~----g~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
|||+|||+|.||.+++..|...|++ .+|.++|+++++++.. .... .. ...+..+.+++||+||++++..
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~--~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSC--SELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGAN 78 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC---
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 5899999999999999999998842 3899999998765532 1111 12 1112346788999999999422
Q ss_pred ----------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 136 ----------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 136 ----------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
.++++++++ .++ .++.+|+..++++..
T Consensus 79 ~~~g~~r~dl~~~n~~i~~~i~~~i-~~~---~p~~~vi~~tNP~~~ 121 (304)
T 2v6b_A 79 QKPGESRLDLLEKNADIFRELVPQI-TRA---APDAVLLVTSNPVDL 121 (304)
T ss_dssp ---------CHHHHHHHHHHHHHHH-HHH---CSSSEEEECSSSHHH
T ss_pred CCCCCcHHHHHHhHHHHHHHHHHHH-HHh---CCCeEEEEecCchHH
Confidence 246666777 665 366677667776654
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.7e-07 Score=85.81 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=64.6
Q ss_pred CCCeEEEEccc-HHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHH
Q psy316 63 MWTKVGFIGAG-NMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v 137 (341)
|++||||||+| .||..++..|.+... .++ .++++++++++.+++++|+ .+.|.++++++ .|+|++|+|+...
T Consensus 1 ~~~rigiiG~G~~~~~~~~~~l~~~~~---~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H 77 (387)
T 3moi_A 1 MKIRFGICGLGFAGSVLMAPAMRHHPD---AQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFH 77 (387)
T ss_dssp CCEEEEEECCSHHHHTTHHHHHHHCTT---EEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGH
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCC---eEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHH
Confidence 56899999999 999999999987531 344 5899999999888877888 78899999874 9999999999766
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.+++...
T Consensus 78 ~~~~~~a 84 (387)
T 3moi_A 78 CEHVVQA 84 (387)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655444
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=82.38 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=65.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC----cC-----CC--c-cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP----EP-----MD--F-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~----~~-----~g--~-~~~s~~e~~~~aDvIilaV 132 (341)
|||+|||+|.||.+++..|...+. .++|+++|+++++++.+. .. .. + .+.+.++ +++||+||+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~--g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav 77 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQL--ARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITA 77 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--CSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeC
Confidence 589999999999999999988642 369999999987766432 10 01 2 3355555 89999999999
Q ss_pred Ch----------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 KP----------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ~~----------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+. ..++++.+.+ .++. ++.+|+..++++.
T Consensus 78 ~~p~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~---~~~~viv~tNP~~ 122 (310)
T 1guz_A 78 GLPRKPGMTREDLLMKNAGIVKEVTDNI-MKHS---KNPIIIVVSNPLD 122 (310)
T ss_dssp SCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHC---SSCEEEECCSSHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhC---CCcEEEEEcCchH
Confidence 52 1234555666 5554 5556666666544
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=70.78 Aligned_cols=66 Identities=20% Similarity=0.381 Sum_probs=51.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cChHH---H-hhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---NDNHR---I-IKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s~~e---~-~~~aDvIilaV~~~ 135 (341)
++|.|+|+|.+|..+++.|.+.|+ +|++++|++++.+.+.+. +. .. .+.+. + +..+|+||.+++..
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~----~v~~~d~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGH----EVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC----CCEEEESCHHHHHTTTTT-CSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHh-CCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 579999999999999999999984 899999999988877653 43 11 22221 1 46799999999863
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=83.58 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=62.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCC----c-cccChHHHhh--cCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMD----F-ALNDNHRIIK--EAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g----~-~~~s~~e~~~--~aDvIilaV~~~ 135 (341)
++||||||+|+||..+++.|.+.. ..++ .+++|++++++.+.+++| . ...+.+++++ +.|+|++|+|+.
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~---~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 82 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAP---NATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS 82 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCT---TEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred ceEEEEECchHHHHHHHHHHhhCC---CcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH
Confidence 478999999999999999998753 1344 689999999888777666 3 5678888886 599999999998
Q ss_pred HHHHHHHHh
Q psy316 136 YLDSAIQGL 144 (341)
Q Consensus 136 ~v~~vl~~i 144 (341)
...+++...
T Consensus 83 ~h~~~~~~a 91 (362)
T 1ydw_A 83 LHVEWAIKA 91 (362)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766554
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-06 Score=78.53 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=64.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+|||+|+|+|+||+.+++.+.+.+ +++ .+++|+++. ..|+ .+.+.++++ ++|+||-++.|..+.+.+
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~----~eLva~~d~~~~~------~~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~~ 71 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKG----HEIVGVIENTPKA------TTPYQQYQHIADVK-GADVAIDFSNPNLLFPLL 71 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT----CEEEEEECSSCC--------CCSCBCSCTTTCT-TCSEEEECSCHHHHHHHH
T ss_pred ceEEEEECcCHHHHHHHHHHHhCC----CEEEEEEecCccc------cCCCceeCCHHHHh-CCCEEEEeCChHHHHHHH
Confidence 379999999999999999998876 254 468887652 2577 677777777 999999888887766655
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
. + ..+.-+|..+.|.+.+++++
T Consensus 72 ~-l-------~~g~~vVigTTG~s~e~~~~ 93 (243)
T 3qy9_A 72 D-E-------DFHLPLVVATTGEKEKLLNK 93 (243)
T ss_dssp T-S-------CCCCCEEECCCSSHHHHHHH
T ss_pred H-H-------hcCCceEeCCCCCCHHHHHH
Confidence 4 4 34444455557887655443
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=6.8e-07 Score=82.61 Aligned_cols=94 Identities=10% Similarity=0.134 Sum_probs=67.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||+|.||.+++..|.+.|. .+|++++|++++++.+.++... ...+..+.+.++|+||-++|......+-.
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G~---~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~ 193 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIVR---PTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS 193 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTCC---SCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence 4689999999999999999999984 4899999999999988875433 34456666789999999998643222100
Q ss_pred HhhhcccccCCCcEEEEecC
Q psy316 143 GLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~a 162 (341)
.+....+ +++.+|+++.-
T Consensus 194 ~l~~~~l--~~~~~V~D~vY 211 (277)
T 3don_A 194 VISLNRL--ASHTLVSDIVY 211 (277)
T ss_dssp SSCCTTC--CSSCEEEESCC
T ss_pred CCCHHHc--CCCCEEEEecC
Confidence 0102245 67888888753
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=83.45 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=57.1
Q ss_pred CCCeEEEEcccHHHHHH-HHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHH
Q psy316 63 MWTKVGFIGAGNMAQAV-ATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~G~mG~ai-a~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v 137 (341)
|++||||||+|.||..+ +..++... +..+|. +++|++++++...+..++ .+.|.++++.+ .|+|++|+|+...
T Consensus 1 m~~rvgiiG~G~~g~~~~~~~~~~~~--~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 78 (345)
T 3f4l_A 1 MVINCAFIGFGKSTTRYHLPYVLNRK--DSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 78 (345)
T ss_dssp -CEEEEEECCSHHHHHHTHHHHTTCT--TTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGH
T ss_pred CceEEEEEecCHHHHHHHHHHHHhcC--CCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHH
Confidence 67899999999999864 44243321 234665 899998887655553356 77889998875 8999999998766
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.+++...
T Consensus 79 ~~~~~~a 85 (345)
T 3f4l_A 79 FEYAKRA 85 (345)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=86.41 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=72.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
.++|+|||+|.||+.+|+.+...|. +|++++|++.+...... .|+...+.++++++||+|++++....+-. .+
T Consensus 257 GktVgIIG~G~IG~~vA~~l~~~G~----~Viv~d~~~~~~~~a~~-~g~~~~~l~ell~~aDiVi~~~~t~~lI~--~~ 329 (479)
T 1v8b_A 257 GKIVVICGYGDVGKGCASSMKGLGA----RVYITEIDPICAIQAVM-EGFNVVTLDEIVDKGDFFITCTGNVDVIK--LE 329 (479)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTC----EEEEECSCHHHHHHHHT-TTCEECCHHHHTTTCSEEEECCSSSSSBC--HH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCcC----EEEEEeCChhhHHHHHH-cCCEecCHHHHHhcCCEEEECCChhhhcC--HH
Confidence 5789999999999999999999885 99999999887533333 36634578899999999999974332210 12
Q ss_pred hhhcccccCCCcEEEEecCC---CCHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVG---VDLETLKK 171 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~ag---i~~~~l~~ 171 (341)
. ...+ +++.+||++..| +..+.+.+
T Consensus 330 ~-l~~M--K~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 330 H-LLKM--KNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp H-HTTC--CTTCEEEECSSTTTSBCHHHHHT
T ss_pred H-Hhhc--CCCcEEEEeCCCCccccchhhhc
Confidence 2 2335 788999998766 45566666
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=82.69 Aligned_cols=77 Identities=6% Similarity=0.114 Sum_probs=60.7
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
++||||||+|.||.. ++..+.+.. ..+| .+++|++++++.+++++|+ .++|.+++++ +.|+|++|+|+..-
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~---~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H 99 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAE---NCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQH 99 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCS---SEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGH
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCC---CeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchh
Confidence 479999999999975 566676653 2355 4899999999999888887 5789999886 48999999998765
Q ss_pred HHHHHH
Q psy316 138 DSAIQG 143 (341)
Q Consensus 138 ~~vl~~ 143 (341)
.++...
T Consensus 100 ~~~~~~ 105 (350)
T 4had_A 100 IEWSIK 105 (350)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=84.07 Aligned_cols=78 Identities=9% Similarity=0.081 Sum_probs=61.1
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc------cccChHHHhh--cCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQ-AVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF------ALNDNHRIIK--EAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~-aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~------~~~s~~e~~~--~aDvIilaV~ 133 (341)
++||||||+|+||. .++..|.+.. ..++ .++++++++++.+.+++|+ .+.+.++++. +.|+|++|+|
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~---~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp 159 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQ---HSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILP 159 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCS---SEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSC
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCC---CcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCC
Confidence 36999999999997 8999887653 1354 6899999998887766665 2577888886 7999999999
Q ss_pred hHHHHHHHHHh
Q psy316 134 PQYLDSAIQGL 144 (341)
Q Consensus 134 ~~~v~~vl~~i 144 (341)
+....+++...
T Consensus 160 ~~~h~~~~~~a 170 (433)
T 1h6d_A 160 NSLHAEFAIRA 170 (433)
T ss_dssp GGGHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 98776666544
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.2e-06 Score=79.25 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=64.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc----CcC-----CC--c-cccChHHHhhcCCEEEE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW----PEP-----MD--F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l----~~~-----~g--~-~~~s~~e~~~~aDvIil 130 (341)
|+|||+|||+|.||..++..|...|+ .+|.++|+++++++.. ... .. + .+.+. +.+++||+||+
T Consensus 1 M~~kI~VIGaG~vG~~~a~~la~~g~---~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~ 76 (309)
T 1ur5_A 1 MRKKISIIGAGFVGSTTAHWLAAKEL---GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVV 76 (309)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC---SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---CeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEE
Confidence 56899999999999999999999885 2699999988766532 110 01 2 23555 77899999999
Q ss_pred eeC-h---------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 131 AMK-P---------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 131 aV~-~---------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
++. | ..++++.+.+ ..+ .++.+|+-.++.++
T Consensus 77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i-~~~---~p~a~vi~~tNPv~ 123 (309)
T 1ur5_A 77 TSGAPRKPGMSREDLIKVNADITRACISQA-APL---SPNAVIIMVNNPLD 123 (309)
T ss_dssp CCCC--------CHHHHHHHHHHHHHHHHH-GGG---CTTCEEEECCSSHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-Hhh---CCCeEEEEcCCchH
Confidence 982 1 1234555555 544 35666665556544
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-06 Score=70.73 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHH
Q psy316 64 WTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.++|+|||+ |++|..++++|.+.|+ + +|++|+.+ .+.+ .|. ...+..++....|++++++|+..+
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~----~--v~~vnp~~~~~~i---~G~~~~~sl~el~~~vDlavi~vp~~~~ 83 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY----R--VLPVNPRFQGEEL---FGEEAVASLLDLKEPVDILDVFRPPSAL 83 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC----E--EEEECGGGTTSEE---TTEECBSSGGGCCSCCSEEEECSCHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCC----E--EEEeCCCcccCcC---CCEEecCCHHHCCCCCCEEEEEeCHHHH
Confidence 568999999 8999999999999995 5 66677764 2222 367 677888877789999999999999
Q ss_pred HHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
.++++++ ... ....+++. .|...+++.+...
T Consensus 84 ~~v~~~~-~~~---gi~~i~~~--~g~~~~~~~~~a~ 114 (140)
T 1iuk_A 84 MDHLPEV-LAL---RPGLVWLQ--SGIRHPEFEKALK 114 (140)
T ss_dssp TTTHHHH-HHH---CCSCEEEC--TTCCCHHHHHHHH
T ss_pred HHHHHHH-HHc---CCCEEEEc--CCcCHHHHHHHHH
Confidence 9999877 442 23345543 4555555555544
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-06 Score=84.85 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=71.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-H-HHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-L-DSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v-~~vl 141 (341)
.++|+|||+|+||+.+|+.+...|. +|++|+|++.+...... .|+...+.+++++++|+|++++.... + .+.+
T Consensus 277 GktVgIIG~G~IG~~vA~~l~~~G~----~V~v~d~~~~~~~~a~~-~G~~~~~l~ell~~aDiVi~~~~t~~lI~~~~l 351 (494)
T 3d64_A 277 GKIAVVAGYGDVGKGCAQSLRGLGA----TVWVTEIDPICALQAAM-EGYRVVTMEYAADKADIFVTATGNYHVINHDHM 351 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC----EEEEECSCHHHHHHHHT-TTCEECCHHHHTTTCSEEEECSSSSCSBCHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCC----EEEEEeCChHhHHHHHH-cCCEeCCHHHHHhcCCEEEECCCcccccCHHHH
Confidence 4789999999999999999998885 99999999876533223 36633478899999999999985332 2 2333
Q ss_pred HHhhhcccccCCCcEEEEecCC---CCHHHHHHhc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG---VDLETLKKKL 173 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag---i~~~~l~~~l 173 (341)
. .+ +++.+||++..| ++.+.| +.+
T Consensus 352 ~-----~M--K~gAilINvgrg~veID~~aL-~AL 378 (494)
T 3d64_A 352 K-----AM--RHNAIVCNIGHFDSEIDVAST-RQY 378 (494)
T ss_dssp H-----HC--CTTEEEEECSSSSCSBCCGGG-TTS
T ss_pred h-----hC--CCCcEEEEcCCCcchhchHHH-Hhh
Confidence 3 34 788899998765 244555 444
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.2e-06 Score=78.85 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=60.7
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCC-c-cccChHHHhh--cCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQ-AVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMD-F-ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~-aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g-~-~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
++||||||+|++|. .++..|...++ +| .+++|++++++.++++++ . .+.|.+++++ +.|+|++|+|+...
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~----~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 79 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGA----ELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDR 79 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTC----EEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGH
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCc----EEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhH
Confidence 36999999999996 67777765553 64 699999999988877774 4 6788889886 68999999998766
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.++....
T Consensus 80 ~~~~~~a 86 (336)
T 2p2s_A 80 AELALRT 86 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.19 E-value=8.7e-07 Score=83.59 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=65.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC---c--cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD---F--ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g---~--~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++|+|||+|.||..+++.|.+.. +..+|++|+|++++++.+.++++ + .+.+.++++ ++|+|+.|+|...
T Consensus 125 ~~~v~iIGaG~~a~~~~~al~~~~--~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~-- 199 (322)
T 1omo_A 125 SSVFGFIGCGTQAYFQLEALRRVF--DIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRK-- 199 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHS--CCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSS--
T ss_pred CCEEEEEcCcHHHHHHHHHHHHhC--CccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCC--
Confidence 368999999999999999998742 13689999999999988876432 2 356778888 9999999999642
Q ss_pred HHHHHhhhcccccCCCcEEEEe
Q psy316 139 SAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. ...+ ++++.|+.+
T Consensus 200 pv~~---~~~l--~~G~~V~~i 216 (322)
T 1omo_A 200 PVVK---AEWV--EEGTHINAI 216 (322)
T ss_dssp CCBC---GGGC--CTTCEEEEC
T ss_pred ceec---HHHc--CCCeEEEEC
Confidence 2221 2346 678777765
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.4e-06 Score=83.51 Aligned_cols=105 Identities=9% Similarity=0.120 Sum_probs=73.2
Q ss_pred CeEEEEcccHH-HHHHHHHHHhc--CCCCCCeEEEEcCChhhhhhcCc---C------CC--c-cccChHHHhhcCCEEE
Q psy316 65 TKVGFIGAGNM-AQAVATSLIRT--GLCIPAQIIASAPSERFKLHWPE---P------MD--F-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~m-G~aia~~L~~~--G~~~~~~V~v~~r~~e~~~~l~~---~------~g--~-~~~s~~e~~~~aDvIi 129 (341)
+||+|||+|.. |.+++..|++. + ++.++|.+||+++++++...+ . .. + .++|..+++++||+||
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~-l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEE-FPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTT-SCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCC-CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 59999999998 77788888887 4 234689999999987664221 0 12 2 3457678899999999
Q ss_pred EeeChH------------------------------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHHHH
Q psy316 130 LAMKPQ------------------------------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKK 171 (341)
Q Consensus 130 laV~~~------------------------------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~ 171 (341)
++++.. .+.++++.+ ..+ .|+.+++..++.+++ +.+.+
T Consensus 108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i-~~~---~P~A~ii~~TNPvdi~T~~~~k 183 (472)
T 1u8x_X 108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYM-EKY---SPDAWMLNYSNPAAIVAEATRR 183 (472)
T ss_dssp ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHH-HHH---CTTCEEEECCSCHHHHHHHHHH
T ss_pred EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHH-HHH---CCCeEEEEeCCcHHHHHHHHHH
Confidence 999762 244555555 554 478888888887764 34444
Q ss_pred hcc
Q psy316 172 KLS 174 (341)
Q Consensus 172 ~l~ 174 (341)
..+
T Consensus 184 ~~p 186 (472)
T 1u8x_X 184 LRP 186 (472)
T ss_dssp HST
T ss_pred hCC
Confidence 444
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.6e-06 Score=83.70 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCeEEEEcccHH--HHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC---cC---C--Cc-cccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNM--AQAVATSLIRTGLCIPAQIIASAPSERFKLHWP---EP---M--DF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~m--G~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~---~~---~--g~-~~~s~~e~~~~aDvIilaV 132 (341)
.+||+|||+|.| |..|+..|+....+.. +|.+||+++++++.+. +. . .+ .++|.++++++||+||+++
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~ai 83 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISI 83 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEecc
Confidence 369999999996 6899999887432233 9999999987765332 11 1 23 5678889999999999999
Q ss_pred Ch
Q psy316 133 KP 134 (341)
Q Consensus 133 ~~ 134 (341)
++
T Consensus 84 rv 85 (450)
T 3fef_A 84 LP 85 (450)
T ss_dssp CS
T ss_pred cc
Confidence 75
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.18 E-value=5e-06 Score=77.62 Aligned_cols=82 Identities=9% Similarity=0.137 Sum_probs=54.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++||+|||+|+||..+++.|.+.. ..++. +++|++++++. +|+ ...+..+. .++|+||+|+|+....+
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~---~~elvav~d~~~~~~~~----~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~ 80 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAP---DFEIAGIVRRNPAEVPF----ELQPFRVVSDIEQL-ESVDVALVCSPSREVER 80 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCT---TEEEEEEECC-----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHH
T ss_pred CCEEEEECChHHHHHHHHHHhcCC---CCEEEEEEcCCHHHHHH----cCCCcCCHHHHHhC-CCCCEEEECCCchhhHH
Confidence 469999999999999999998743 24665 79999887654 454 23444443 68999999999987766
Q ss_pred HHHHhhhcccccCCCcEEEE
Q psy316 140 AIQGLVNDKVTLNSSRCIIS 159 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs 159 (341)
++... + ..++-|+.
T Consensus 81 ~~~~a----l--~aG~~Vi~ 94 (304)
T 3bio_A 81 TALEI----L--KKGICTAD 94 (304)
T ss_dssp HHHHH----H--TTTCEEEE
T ss_pred HHHHH----H--HcCCeEEE
Confidence 66554 3 44555553
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-06 Score=70.09 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=69.2
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
..+|+|||+ |++|..++++|.+.|+ + +|++|+.. +.+ .|+ ...+..++....|+++++||+..+.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~----~--v~~Vnp~~-~~i---~G~~~y~sl~~l~~~vDlvvi~vp~~~~~ 91 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGY----D--VYPVNPKY-EEV---LGRKCYPSVLDIPDKIEVVDLFVKPKLTM 91 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC----E--EEEECTTC-SEE---TTEECBSSGGGCSSCCSEEEECSCHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCC----E--EEEECCCC-CeE---CCeeccCCHHHcCCCCCEEEEEeCHHHHH
Confidence 578999999 7999999999999985 5 55555543 222 477 6778888777899999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
++++++ ... ....++ +..|...+.+.+...
T Consensus 92 ~vv~~~-~~~---gi~~i~--~~~g~~~~~l~~~a~ 121 (144)
T 2d59_A 92 EYVEQA-IKK---GAKVVW--FQYNTYNREASKKAD 121 (144)
T ss_dssp HHHHHH-HHH---TCSEEE--ECTTCCCHHHHHHHH
T ss_pred HHHHHH-HHc---CCCEEE--ECCCchHHHHHHHHH
Confidence 999887 442 233344 345555555655554
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.2e-06 Score=80.89 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=65.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---------CC--c-cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---------MD--F-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---------~g--~-~~~s~~e~~~~aDvIilaV 132 (341)
+||+|||+|.||..++..|...|++ +|.++|+++++++..... .. + .+.+. +.+++||+||+++
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~---~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~ 80 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLG---DVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA 80 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence 6899999999999999999998852 599999998766532110 11 2 33565 7799999999998
Q ss_pred --Ch-------------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 --KP-------------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 --~~-------------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
|. ..++++++++ .++. ++.+++-.++.++
T Consensus 81 g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i-~~~~---p~a~iiv~tNP~~ 130 (322)
T 1t2d_A 81 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KKNC---PNAFIIVVTNPVD 130 (322)
T ss_dssp SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHH-HHHC---TTSEEEECSSSHH
T ss_pred CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEecCChH
Confidence 31 1356666777 6654 5666665556444
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-06 Score=83.80 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=72.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
.++|+|||+|++|..+++.|...|. +|+++++++.+...... .|....+.+++++.+|+|+++.....+-. .+
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka~Ga----~Viv~D~~p~~a~~A~~-~G~~~~sL~eal~~ADVVilt~gt~~iI~--~e 283 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRGFGA----RVVVTEVDPINALQAAM-EGYQVLLVEDVVEEAHIFVTTTGNDDIIT--SE 283 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTCEECCHHHHTTTCSEEEECSSCSCSBC--TT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----EEEEECCChhhhHHHHH-hCCeecCHHHHHhhCCEEEECCCCcCccC--HH
Confidence 4789999999999999999999985 89999999877655444 46634588999999999998775433211 12
Q ss_pred hhhcccccCCCcEEEEecCC---CCHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVG---VDLETLKK 171 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~ag---i~~~~l~~ 171 (341)
. ...+ +++.+||++..| +..+.+.+
T Consensus 284 ~-l~~M--K~gAIVINvgRg~vEID~~~L~~ 311 (436)
T 3h9u_A 284 H-FPRM--RDDAIVCNIGHFDTEIQVAWLKA 311 (436)
T ss_dssp T-GGGC--CTTEEEEECSSSGGGBCHHHHHH
T ss_pred H-Hhhc--CCCcEEEEeCCCCCccCHHHHHh
Confidence 2 3345 788899988755 34555654
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-06 Score=82.82 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=63.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----CCc---cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----MDF---ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----~g~---~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
++++|||+|.||..+++.|.... +..+|++|||+ +++.+.++ +|+ .. +.++++.++|+||.|+|...
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~--~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~- 195 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARF--ALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTT- 195 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS--CCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS-
T ss_pred cEEEEECccHHHHHHHHHHHHhC--CCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC-
Confidence 68999999999999999998742 23689999999 55555442 354 34 88999999999999998742
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.++. .+.+ ++++.|+++
T Consensus 196 -pvl~---~~~l--~~G~~V~~v 212 (313)
T 3hdj_A 196 -PLFA---GQAL--RAGAFVGAI 212 (313)
T ss_dssp -CSSC---GGGC--CTTCEEEEC
T ss_pred -cccC---HHHc--CCCcEEEEC
Confidence 2332 2346 788887766
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=79.66 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=50.8
Q ss_pred CCeEEEEcccHH--HHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-------CC--C--c-cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNM--AQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-------PM--D--F-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~m--G~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-------~~--g--~-~~~s~~e~~~~aDvIi 129 (341)
++||+|||+|.| |.+++..|+...-++.++|.+||+++++++.... .. . + .++|..+++++||+||
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 479999999997 5777888875411223699999999987664221 01 1 2 3456678899999999
Q ss_pred EeeCh
Q psy316 130 LAMKP 134 (341)
Q Consensus 130 laV~~ 134 (341)
++++.
T Consensus 83 iaagv 87 (480)
T 1obb_A 83 NTAMV 87 (480)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 99964
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.11 E-value=7e-06 Score=79.93 Aligned_cols=78 Identities=10% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCeEEEEcccH---HHHHHHHHHHhcCCCCCCeEE--EEcCChhhhhhcCcCCCc----cccChHHHhhc-------CCE
Q psy316 64 WTKVGFIGAGN---MAQAVATSLIRTGLCIPAQII--ASAPSERFKLHWPEPMDF----ALNDNHRIIKE-------AEY 127 (341)
Q Consensus 64 ~~kIgiIG~G~---mG~aia~~L~~~G~~~~~~V~--v~~r~~e~~~~l~~~~g~----~~~s~~e~~~~-------aDv 127 (341)
++||||||+|. ||...+..+...+. .++. +++|++++++.+++++|+ .+.+.++++.+ .|+
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~---~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~ 113 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDH---YELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEA 113 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSC---EEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSE
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCC---cEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcE
Confidence 36999999999 99999888877652 3553 789999999988776765 45788888876 899
Q ss_pred EEEeeChHHHHHHHHHh
Q psy316 128 VFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 128 IilaV~~~~v~~vl~~i 144 (341)
|++|+|+....+++...
T Consensus 114 V~I~tp~~~H~~~~~~a 130 (417)
T 3v5n_A 114 VAIVTPNHVHYAAAKEF 130 (417)
T ss_dssp EEECSCTTSHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHH
Confidence 99999987666665443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-06 Score=83.12 Aligned_cols=85 Identities=11% Similarity=0.111 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc-------------------------cCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL-------------------------NDN 118 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~-------------------------~s~ 118 (341)
.||+|||+|.+|..+++.+...|. +|+++||++++++.+.+ +|. .. .+.
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa----~V~v~D~~~~~l~~~~~-lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l 259 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGA----KTTGYDVRPEVAEQVRS-VGAQWLDLGIDAAGEGGYARELSEAERAQQQQAL 259 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTC----EEEEECSSGGGHHHHHH-TTCEECCCC-------------CHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence 589999999999999999999995 89999999998887765 554 21 134
Q ss_pred HHHhhcCCEEEEee--ChH-----HHHHHHHHhhhcccccCCCcEEEEec
Q psy316 119 HRIIKEAEYVFLAM--KPQ-----YLDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 119 ~e~~~~aDvIilaV--~~~-----~v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
.+.++++|+||.++ |.. ..++.++. + +++.+||+++
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~-----M--kpGsVIVDvA 302 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRPAPRLVTAAAATG-----M--QPGSVVVDLA 302 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCBCHHHHHT-----S--CTTCEEEETT
T ss_pred HHHHhcCCEEEECCCCCCcccceeecHHHHhc-----C--CCCcEEEEEe
Confidence 56788999999986 321 12344443 4 7888999875
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.7e-06 Score=76.14 Aligned_cols=95 Identities=16% Similarity=0.251 Sum_probs=65.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCc---CC--C--c-cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPE---PM--D--F-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~---~~--g--~-~~~s~~e~~~~aDvIilaV 132 (341)
|||+|||+|.||.+++..|...|++ .+|.+||+++++++. +.. .+ . + .+.+ .+++++||+||++.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~--~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaa 77 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC--CeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECC
Confidence 6899999999999999999998852 489999999987641 111 01 2 2 2345 78899999999997
Q ss_pred C----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 K----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ~----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
. | ..++++.+.+ ..+ .++.+++-.++.+..
T Consensus 78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i-~~~---~p~a~iivvsNPvd~ 123 (294)
T 1oju_A 78 GLARKPGMTRLDLAHKNAGIIKDIAKKI-VEN---APESKILVVTNPMDV 123 (294)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHH-HTT---STTCEEEECSSSHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHH-Hhh---CCCeEEEEeCCcchH
Confidence 2 2 1133444445 443 467777777776553
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.3e-06 Score=79.38 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------C--Cc-cccChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------M--DF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~--g~-~~~s~~e~~~~aDvIilaV 132 (341)
+.+||+|||+|.||.+++..|...|. ..+|.++|+++++++....+ . .. ...+..+.+++||+||+++
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~--~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~ 82 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGI--ADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICA 82 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC--CCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcC
Confidence 45799999999999999999988874 35899999998765532111 1 12 2234467789999999996
Q ss_pred Ch----------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 KP----------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ~~----------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+. ..+.++++.+ .++. ++.+++-.++.+.
T Consensus 83 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~---p~a~~iv~tNPv~ 127 (316)
T 1ldn_A 83 GANQKPGETRLDLVDKNIAIFRSIVESV-MASG---FQGLFLVATNPVD 127 (316)
T ss_dssp SCCCCTTTCSGGGHHHHHHHHHHHHHHH-HHHT---CCSEEEECSSSHH
T ss_pred CCCCCCCCCHHHHHHcChHHHHHHHHHH-HHHC---CCCEEEEeCCchH
Confidence 42 2345555666 5554 5555555666544
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.1e-06 Score=77.93 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=67.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC-----CCc-cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP-----MDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~-----~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
.+||+|||+|.||.+++..|+..|++ .+|.++|+++++++. |... .++ ...+..+.+++||+||++..
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~--~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag 82 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGIT--DELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAG 82 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecc
Confidence 46899999999999999999998853 489999999887654 3321 123 23344577899999999972
Q ss_pred ----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 134 ----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 134 ----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|. .++++.+.+ ..+ .++.+|+..++.+.+
T Consensus 83 ~p~kpG~~R~dL~~~N~~Iv~~i~~~I-~~~---~p~a~vlvvtNPvd~ 127 (326)
T 3pqe_A 83 ANQKPGETRLELVEKNLKIFKGIVSEV-MAS---GFDGIFLVATNPVDI 127 (326)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHH-HHT---TCCSEEEECSSSHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHH-HHh---cCCeEEEEcCChHHH
Confidence 21 133444445 443 366777777776553
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.5e-06 Score=80.30 Aligned_cols=81 Identities=10% Similarity=0.049 Sum_probs=61.7
Q ss_pred CC-CeEEEEcccHHHHHHHHHHHhcCCC---C-CCe-EEEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEee
Q psy316 63 MW-TKVGFIGAGNMAQAVATSLIRTGLC---I-PAQ-IIASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAM 132 (341)
Q Consensus 63 m~-~kIgiIG~G~mG~aia~~L~~~G~~---~-~~~-V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV 132 (341)
|+ .||||||+|.||...+..|.+...+ . ..+ +.++++++++++.+++++|+ ...|.+++++ +.|+|++|+
T Consensus 4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~t 83 (390)
T 4h3v_A 4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCT 83 (390)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECS
T ss_pred CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeC
Confidence 65 4899999999999988887654210 0 013 45899999999998888887 6788899886 589999999
Q ss_pred ChHHHHHHHHH
Q psy316 133 KPQYLDSAIQG 143 (341)
Q Consensus 133 ~~~~v~~vl~~ 143 (341)
|+....++...
T Consensus 84 P~~~H~~~~~~ 94 (390)
T 4h3v_A 84 PGDSHAEIAIA 94 (390)
T ss_dssp CGGGHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 98765555544
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.5e-06 Score=79.79 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=62.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC-----CCCCe-EEEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGL-----CIPAQ-IIASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~-----~~~~~-V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~ 133 (341)
++||||||+|.||...+..|.+.+. ....+ +.++|+++++++++++++|+ .+.|.+++++ +.|+|++|+|
T Consensus 26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp 105 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSP 105 (412)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSC
T ss_pred cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCC
Confidence 3689999999999999988876431 01123 45899999999999888887 6788899886 5899999999
Q ss_pred hHHHHHHHHH
Q psy316 134 PQYLDSAIQG 143 (341)
Q Consensus 134 ~~~v~~vl~~ 143 (341)
+..-.++...
T Consensus 106 ~~~H~~~~~~ 115 (412)
T 4gqa_A 106 NHLHYTMAMA 115 (412)
T ss_dssp GGGHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 8766665544
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.7e-06 Score=79.09 Aligned_cols=75 Identities=21% Similarity=0.144 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC---cccc---ChHHHhhcCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD---FALN---DNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g---~~~~---s~~e~~~~aDvIilaV~~~~v 137 (341)
+|||.|||+|.+|+.+++.|.+. ++|++++|+.++++++.+... +-.. +..++++++|+||.|+||..-
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~ 90 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKDE-----FDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLG 90 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTT-----SEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGH
T ss_pred ccEEEEECCCHHHHHHHHHHhcC-----CCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCccc
Confidence 57999999999999999988653 489999999999888766321 1122 234567899999999999765
Q ss_pred HHHHHH
Q psy316 138 DSAIQG 143 (341)
Q Consensus 138 ~~vl~~ 143 (341)
..+++.
T Consensus 91 ~~v~~~ 96 (365)
T 3abi_A 91 FKSIKA 96 (365)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 555544
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.07 E-value=9.3e-06 Score=76.79 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=62.9
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAG-NMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G-~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
++||||||+| .+|...+..|.+.+ +..++ .++++++++++.+++++|+ .+.|.+++++ +.|+|++|+|+...
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~--~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 95 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLS--HLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN 95 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTT--TTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCC--CceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 4689999999 89999999998752 12354 6899999999988877776 6788888886 58999999998766
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.+++...
T Consensus 96 ~~~~~~a 102 (340)
T 1zh8_A 96 LPFIEKA 102 (340)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=78.13 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCeEEEEcccHH-HHHHHHHHHh--cCCCCCCeEEEEcCCh--hhhhhcC---c----CC--C--c-cccChHHHhhcCC
Q psy316 64 WTKVGFIGAGNM-AQAVATSLIR--TGLCIPAQIIASAPSE--RFKLHWP---E----PM--D--F-ALNDNHRIIKEAE 126 (341)
Q Consensus 64 ~~kIgiIG~G~m-G~aia~~L~~--~G~~~~~~V~v~~r~~--e~~~~l~---~----~~--g--~-~~~s~~e~~~~aD 126 (341)
++||+|||+|.+ |.+++..|++ .+ ++.++|.+||+++ ++++... . .. . + .+.|..+++++||
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~-l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD 85 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHE-LPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGAD 85 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTT-CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCC-CCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCC
Confidence 479999999999 8888888887 33 3346899999998 7655411 1 11 2 2 3456678899999
Q ss_pred EEEEeeChH------------------------------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH--HH
Q psy316 127 YVFLAMKPQ------------------------------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ET 168 (341)
Q Consensus 127 vIilaV~~~------------------------------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~ 168 (341)
+||++++.. .+.++++.+ ..+ .|+.+++..++.+++ +.
T Consensus 86 ~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i-~~~---~P~a~ii~~tNPvdivT~a 161 (450)
T 1s6y_A 86 FVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDM-EEL---CPDAWLINFTNPAGMVTEA 161 (450)
T ss_dssp EEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHH-HHH---CTTCEEEECSSSHHHHHHH
T ss_pred EEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHH-HHH---CCCeEEEEeCCcHHHHHHH
Confidence 999999842 244555555 554 478888888887764 34
Q ss_pred HHHhcc
Q psy316 169 LKKKLS 174 (341)
Q Consensus 169 l~~~l~ 174 (341)
+.+..+
T Consensus 162 ~~k~~p 167 (450)
T 1s6y_A 162 VLRYTK 167 (450)
T ss_dssp HHHHCC
T ss_pred HHHhCC
Confidence 445444
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-05 Score=76.13 Aligned_cols=77 Identities=8% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc--cccChHHHhhc--CCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQ-AVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF--ALNDNHRIIKE--AEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~-aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~--aDvIilaV~~~~v 137 (341)
++||||||+|.+|. .++..+...+. + +.++++++++++.+++++|. .+.+.++++.+ .|+|++|+|+...
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~----~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H 101 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGA----RLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSER 101 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTC----EEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCc----EEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHH
Confidence 36899999999994 56676666553 5 46899999999988887874 67889998875 8999999998766
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.+++...
T Consensus 102 ~~~~~~a 108 (361)
T 3u3x_A 102 AELAIRA 108 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.2e-06 Score=79.18 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=58.3
Q ss_pred CC-CeEEEEcccHHHHHHHHHHHhcC----CCCCCe-EEEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEee
Q psy316 63 MW-TKVGFIGAGNMAQAVATSLIRTG----LCIPAQ-IIASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAM 132 (341)
Q Consensus 63 m~-~kIgiIG~G~mG~aia~~L~~~G----~~~~~~-V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV 132 (341)
|+ .||||||+|.||..-+..+.... ..+..+ +.++|+++++++.+++++|+ .+.|.+++++ +.|+|++|+
T Consensus 23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat 102 (393)
T 4fb5_A 23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT 102 (393)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence 43 48999999999998777664321 012234 45899999999999888887 6788899886 579999999
Q ss_pred ChHHHHHHHHH
Q psy316 133 KPQYLDSAIQG 143 (341)
Q Consensus 133 ~~~~v~~vl~~ 143 (341)
|+..-.++...
T Consensus 103 P~~~H~~~a~~ 113 (393)
T 4fb5_A 103 PNQFHAEMAIA 113 (393)
T ss_dssp CGGGHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 98765555543
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.02 E-value=3e-05 Score=73.56 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=56.5
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEeeChHHHH
Q psy316 64 WTKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV~~~~v~ 138 (341)
++||||||+|.||.. .+..|.+.. ..+| .++++++++++. ...+. .+.|.++++.+ .|+|++|+|+....
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~---~~~l~av~d~~~~~~~~--~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 81 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTP---GLELAGVSSSDASKVHA--DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHF 81 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTST---TEEEEEEECSCHHHHHT--TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHH
T ss_pred CceEEEECCCHHHHHHHHHHHhhCC---CcEEEEEECCCHHHHHh--hCCCCceECCHHHHhcCCCCCEEEEeCChHHHH
Confidence 478999999999997 777776652 2355 589999988762 21245 67889998875 89999999987655
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+++...
T Consensus 82 ~~~~~a 87 (352)
T 3kux_A 82 PLAQSA 87 (352)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=9.4e-06 Score=80.67 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=71.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH-HH-HH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY-LD-SA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~-v~-~v 140 (341)
..++|+|||+|.||..+++.+...|. +|+++++++++++...+ .|+...+..+++..+|+||++++... +. +.
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga----~Viv~d~~~~~~~~A~~-~Ga~~~~l~e~l~~aDvVi~atgt~~~i~~~~ 347 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGA----RVSVTEIDPINALQAMM-EGFDVVTVEEAIGDADIVVTATGNKDIIMLEH 347 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTCEECCHHHHGGGCSEEEECSSSSCSBCHHH
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCEEecHHHHHhCCCEEEECCCCHHHHHHHH
Confidence 35789999999999999999998884 89999999988766555 57623466788899999999997544 32 33
Q ss_pred HHHhhhcccccCCCcEEEEecCC---CCHHHHHH
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG---VDLETLKK 171 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag---i~~~~l~~ 171 (341)
++ .+ +++.+|+.+..+ ++...+..
T Consensus 348 l~-----~m--k~ggilvnvG~~~~eId~~aL~~ 374 (494)
T 3ce6_A 348 IK-----AM--KDHAILGNIGHFDNEIDMAGLER 374 (494)
T ss_dssp HH-----HS--CTTCEEEECSSSGGGBCHHHHHH
T ss_pred HH-----hc--CCCcEEEEeCCCCCccCHHHHHH
Confidence 33 34 677788876543 33444443
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=78.13 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=66.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHH--HHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYL--DSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v--~~vl 141 (341)
.++++|||+|++|..+|+.+...|. +|+++++++.+...... .|+...+.+++++.+|+|++++....+ .+.+
T Consensus 247 GKTVgVIG~G~IGr~vA~~lrafGa----~Viv~d~dp~~a~~A~~-~G~~vv~LeElL~~ADIVv~atgt~~lI~~e~l 321 (464)
T 3n58_A 247 GKVAVVCGYGDVGKGSAQSLAGAGA----RVKVTEVDPICALQAAM-DGFEVVTLDDAASTADIVVTTTGNKDVITIDHM 321 (464)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSHHHHHHHHH-TTCEECCHHHHGGGCSEEEECCSSSSSBCHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC----EEEEEeCCcchhhHHHh-cCceeccHHHHHhhCCEEEECCCCccccCHHHH
Confidence 4789999999999999999998885 99999999876544333 366334788999999999998754332 3444
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
.. + +++.+||.+.-+
T Consensus 322 ~~-----M--K~GAILINvGRg 336 (464)
T 3n58_A 322 RK-----M--KDMCIVGNIGHF 336 (464)
T ss_dssp HH-----S--CTTEEEEECSSS
T ss_pred hc-----C--CCCeEEEEcCCC
Confidence 44 4 678899887544
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-05 Score=72.01 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=67.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
..+||+|+|+ |+||..+++.|.+.|+ + |+..++ .+.. .+.+|+ .+.+.+++.. ..|++++++|+...
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~----~~V~~V~p--~~~g--~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~ 77 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGT----KMVGGVTP--GKGG--TTHLGLPVFNTVREAVAATGATASVIYVPAPFC 77 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEECT--TCTT--CEETTEEEESSHHHHHHHHCCCEEEECCCGGGH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----eEEEEeCC--Cccc--ceeCCeeccCCHHHHhhcCCCCEEEEecCHHHH
Confidence 3578999999 9999999999998884 4 334544 3221 112577 7788888887 89999999999999
Q ss_pred HHHHHHhhhcccccCCCcEEEEecCCCCHHH
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLVGVDLET 168 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~ 168 (341)
.+++.+. ... .-+.+|-++.|++.++
T Consensus 78 ~~~~~ea-~~~----Gi~~iVi~t~G~~~~~ 103 (288)
T 2nu8_A 78 KDSILEA-IDA----GIKLIITITEGIPTLD 103 (288)
T ss_dssp HHHHHHH-HHT----TCSEEEECCCCCCHHH
T ss_pred HHHHHHH-HHC----CCCEEEEECCCCCHHH
Confidence 8888776 321 1245555777888754
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=7.7e-06 Score=72.69 Aligned_cols=78 Identities=19% Similarity=0.121 Sum_probs=55.5
Q ss_pred CCeEEEEcccHHHHHHHHH--HHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATS--LIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~--L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.++|+|||+|++|.++++. +...|+ .-+.++|+++++........++ ...+..+.+++.|++++|+|.....++
T Consensus 85 ~~rV~IIGAG~~G~~La~~~~~~~~g~---~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~~~ei 161 (215)
T 2vt3_A 85 MTDVILIGVGNLGTAFLHYNFTKNNNT---KISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVAAQSI 161 (215)
T ss_dssp --CEEEECCSHHHHHHHHCC------C---CEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHhcccCCc---EEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchhHHHH
Confidence 4689999999999999994 223343 3456899999887765443444 456777877666999999999877777
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
+..+
T Consensus 162 ~~~l 165 (215)
T 2vt3_A 162 TDRL 165 (215)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.9e-06 Score=77.53 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=54.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc------cccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF------ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~------~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.+++.|||+|.||.+++..|.+.|. .+|++++|++++++.+.++++. ...+..+.+.++|+||.|+|..
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~---~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~ 215 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAA---ERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVG 215 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC---SEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTT
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCC
Confidence 4689999999999999999999984 4899999999998877654432 1123445667899999998854
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.4e-06 Score=79.29 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c------ccChHHHhhcCCEEEEeeC-hH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A------LNDNHRIIKEAEYVFLAMK-PQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~------~~s~~e~~~~aDvIilaV~-~~ 135 (341)
.++|+|||+|.+|..+++.+...|. +|++++|++++++.+.+.+|. . ..+..+.+..+|+||.|+. |.
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga----~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~ 243 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGA----TVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG 243 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence 4789999999999999999999884 899999999887766553443 1 2234567789999999885 22
Q ss_pred H------HHHHHHHhhhcccccCCCcEEEEec
Q psy316 136 Y------LDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 136 ~------v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
. .++.++ .+ +++.+||++.
T Consensus 244 ~~t~~li~~~~l~-----~m--k~g~~iV~va 268 (377)
T 2vhw_A 244 AKAPKLVSNSLVA-----HM--KPGAVLVDIA 268 (377)
T ss_dssp SCCCCCBCHHHHT-----TS--CTTCEEEEGG
T ss_pred CCCcceecHHHHh-----cC--CCCcEEEEEe
Confidence 1 233333 34 6778888875
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.00 E-value=8.3e-06 Score=78.97 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=64.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc----------------------------
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL---------------------------- 115 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~---------------------------- 115 (341)
.||+|||+|.+|..+++.+...|. +|+++|+++++++.+.+ +|. ..
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa----~V~v~D~~~~~l~~~~~-~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~ 265 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGA----VVSATDVRPAAKEQVAS-LGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQ 265 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSTTHHHHHHH-TTCEECCCCC-----------------CHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHH-cCCceeecccccccccccccchhhhcchhhhhhh
Confidence 589999999999999999999995 89999999988776655 443 11
Q ss_pred -cChHHHhhcCCEEEEee--ChH-----HHHHHHHHhhhcccccCCCcEEEEec
Q psy316 116 -NDNHRIIKEAEYVFLAM--KPQ-----YLDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 116 -~s~~e~~~~aDvIilaV--~~~-----~v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
.+..+.++++|+||.++ |.. .-++.++ .+ +++.+||+++
T Consensus 266 ~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~-----~M--k~GsVIVDvA 312 (405)
T 4dio_A 266 AALVAEHIAKQDIVITTALIPGRPAPRLVTREMLD-----SM--KPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHT-----TS--CTTCEEEETT
T ss_pred HhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHh-----cC--CCCCEEEEEe
Confidence 13466788999999986 321 1233333 34 7899999886
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-05 Score=78.86 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=71.4
Q ss_pred ccCCCCCcCCCCCCCCcccCCCCC-CCeEEEEcc----cHHHHHHHHHHHhc-CCCCCCeE-EEEcCChhhhhhcCcCCC
Q psy316 40 HTGARPVRKSDMGMEDSVEHHVPM-WTKVGFIGA----GNMAQAVATSLIRT-GLCIPAQI-IASAPSERFKLHWPEPMD 112 (341)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~m-~~kIgiIG~----G~mG~aia~~L~~~-G~~~~~~V-~v~~r~~e~~~~l~~~~g 112 (341)
|+...-.+.|.+.-.++ | ++||||||+ |.||...+..|.+. . ..+| .++++++++++.+++++|
T Consensus 20 ~~~~~~~~~~~~~~~~~------m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~---~~~lvav~d~~~~~a~~~a~~~g 90 (479)
T 2nvw_A 20 HMLANNNKRSKLSTVPS------SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSS---QFQIVALYNPTLKSSLQTIEQLQ 90 (479)
T ss_dssp CCCCCCCTTSGGGSSGG------GCCEEEEEECCCSTTSHHHHTHHHHHHHTTT---TEEEEEEECSCHHHHHHHHHHTT
T ss_pred HHHhhccccccCCCCCC------CCcCEEEEEcccCCCCHHHHHHHHHHHhcCC---CeEEEEEEeCCHHHHHHHHHHcC
Confidence 67776666666633331 3 368999999 99999999999875 2 1354 589999999988877676
Q ss_pred c----cccChHHHhh--cCCEEEEeeChHHHHHHHHH
Q psy316 113 F----ALNDNHRIIK--EAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 113 ~----~~~s~~e~~~--~aDvIilaV~~~~v~~vl~~ 143 (341)
+ .+.+.+++++ +.|+|++|+|+....+++..
T Consensus 91 ~~~~~~~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~ 127 (479)
T 2nvw_A 91 LKHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKN 127 (479)
T ss_dssp CTTCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHH
T ss_pred CCcceeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 4 4678888886 68999999998766555544
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.7e-05 Score=72.07 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=67.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhh-----hhhcC--cCCCc-cccChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQI-IASAPSERF-----KLHWP--EPMDF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~-----~~~l~--~~~g~-~~~s~~e~~~~aDvIilaV 132 (341)
+++||+|+| +|+||+.+++.+.+.. ..++ .+++|++.. +..+. ...|+ ++.+.++++.++|+||-++
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~---~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT 96 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRK---DVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFS 96 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCS---SEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECS
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCC---CCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcC
Confidence 457999999 8999999999887652 2344 467886422 11221 12467 7788999899999999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHH
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLK 170 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~ 170 (341)
+|....+.+... + ..+.-+|..+.|.+.++++
T Consensus 97 ~p~a~~~~~~~~----l--~~Gv~vViGTTG~~~e~~~ 128 (288)
T 3ijp_A 97 QPQASVLYANYA----A--QKSLIHIIGTTGFSKTEEA 128 (288)
T ss_dssp CHHHHHHHHHHH----H--HHTCEEEECCCCCCHHHHH
T ss_pred CHHHHHHHHHHH----H--HcCCCEEEECCCCCHHHHH
Confidence 998877666554 2 2344455555788865543
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=76.37 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=55.1
Q ss_pred CCCeEEEEcccHHHH-HHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcC---CCc-cccChHHHhhc--CCEEEEeeCh
Q psy316 63 MWTKVGFIGAGNMAQ-AVATSLIRTGLCIPAQI-IASAPSERFKLHWPEP---MDF-ALNDNHRIIKE--AEYVFLAMKP 134 (341)
Q Consensus 63 m~~kIgiIG~G~mG~-aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~---~g~-~~~s~~e~~~~--aDvIilaV~~ 134 (341)
|++||||||+|.||. ..+..|.+. +..+| .+++|+ +.+.+.++ .++ .+.+.++++.+ .|+|++|+|+
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~---~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 75 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIR---ETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPA 75 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTC---TTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCG
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhC---CCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCc
Confidence 678999999999998 455555543 22455 488987 44444443 355 67888998875 8999999998
Q ss_pred HHHHHHHHHh
Q psy316 135 QYLDSAIQGL 144 (341)
Q Consensus 135 ~~v~~vl~~i 144 (341)
....+++...
T Consensus 76 ~~h~~~~~~a 85 (349)
T 3i23_A 76 HTHYDLAKQA 85 (349)
T ss_dssp GGHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666655443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-05 Score=75.30 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=67.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------C--Cc-cccChHHHhhcCCEEEEeeC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------M--DF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------~--g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
..+||+|||+|.+|.+++..|+..+++ .+|.++|+++++++....+ + .+ ...+..+++++||+||++..
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~--~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag 81 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIA--EEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAG 81 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCC--CEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCC
Confidence 357999999999999999999988853 5899999998776632111 1 22 22345677999999999984
Q ss_pred ----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 134 ----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 134 ----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
| ..++++.+.+ ..+ .++.+|+..++.+..
T Consensus 82 ~~~~~g~~R~dl~~~n~~i~~~i~~~i-~~~---~p~a~iiv~tNPv~~ 126 (318)
T 1ez4_A 82 APQKPGESRLDLVNKNLNILSSIVKPV-VDS---GFDGIFLVAANPVDI 126 (318)
T ss_dssp C----------CHHHHHHHHHHHHHHH-HHT---TCCSEEEECSSSHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEEeCCcHHH
Confidence 2 2244455555 444 356666667666553
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.4e-05 Score=76.65 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCc---CCC---c-ccc----ChHHHhh--cCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPE---PMD---F-ALN----DNHRIIK--EAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~---~~g---~-~~~----s~~e~~~--~aDvIi 129 (341)
++||||||+|.||...+..|.+.. ..+| .++++++++++.+++ ++| . ... +.+++++ +.|+|+
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~---~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~ 96 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRD---DVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVF 96 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCT---TEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEE
T ss_pred CceEEEEecCHHHHHHHHHHHhCC---CcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEE
Confidence 369999999999999999887642 2354 589999998887654 234 4 456 8888887 589999
Q ss_pred EeeChHHHHHHHHH
Q psy316 130 LAMKPQYLDSAIQG 143 (341)
Q Consensus 130 laV~~~~v~~vl~~ 143 (341)
+|+|+....+++..
T Consensus 97 i~tp~~~h~~~~~~ 110 (444)
T 2ixa_A 97 VSSPWEWHHEHGVA 110 (444)
T ss_dssp ECCCGGGHHHHHHH
T ss_pred EcCCcHHHHHHHHH
Confidence 99998766555544
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.94 E-value=3.6e-05 Score=63.95 Aligned_cols=95 Identities=9% Similarity=0.003 Sum_probs=60.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC-hhhhhhcCc--CCCc--cc---cCh---HHH-hhcCCEEEEe
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPE--PMDF--AL---NDN---HRI-IKEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~-~e~~~~l~~--~~g~--~~---~s~---~e~-~~~aDvIila 131 (341)
.++|.|+|+|.+|+.+++.|.+.|+ +|++.+++ +++.+.+.+ ..|+ .. .+. .++ +.++|+||++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~----~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQ----NVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC----CEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC----CEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEe
Confidence 3679999999999999999999984 89999997 454444432 1233 11 222 233 6789999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
++++.....+... ...+ .+...|+.......
T Consensus 79 ~~~d~~n~~~~~~-a~~~--~~~~~ii~~~~~~~ 109 (153)
T 1id1_A 79 SDNDADNAFVVLS-AKDM--SSDVKTVLAVSDSK 109 (153)
T ss_dssp SSCHHHHHHHHHH-HHHH--TSSSCEEEECSSGG
T ss_pred cCChHHHHHHHHH-HHHH--CCCCEEEEEECCHH
Confidence 9876655444333 3333 34433444434433
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-05 Score=75.77 Aligned_cols=95 Identities=17% Similarity=0.279 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCc-----CCCc-cc-cChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPE-----PMDF-AL-NDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~-----~~g~-~~-~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+|.||.+++..|+..|+ ..+|.++|+++++++. +.. .... .. .+..+.+++||+||++..
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~--~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDV--AKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAG 78 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--SSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCC
Confidence 689999999999999999999885 3589999999877552 211 0122 22 355678999999999973
Q ss_pred ----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
|. .++++.+.+ ..+ .++.+++..++.+.
T Consensus 79 ~~~kpG~~R~dl~~~N~~i~~~i~~~i-~~~---~p~a~vivvtNPvd 122 (314)
T 3nep_X 79 LPRSPGMSRDDLLAKNTEIVGGVTEQF-VEG---SPDSTIIVVANPLD 122 (314)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHH-HTT---CTTCEEEECCSSHH
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHH-HHh---CCCcEEEecCCchh
Confidence 21 123333444 443 46777777777655
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-05 Score=77.41 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=61.1
Q ss_pred CCeEEEEc-ccHHHHH-HH----HHHHhcCCCC---CCeE----EEEcCChhhhhhcCcCCCc--cccChHHHhhc--CC
Q psy316 64 WTKVGFIG-AGNMAQA-VA----TSLIRTGLCI---PAQI----IASAPSERFKLHWPEPMDF--ALNDNHRIIKE--AE 126 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~a-ia----~~L~~~G~~~---~~~V----~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~--aD 126 (341)
++|||||| +|.||.. .+ ..+.+.+.+. ...+ .+++|++++++.+++++|+ .+.|.++++++ .|
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD 85 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDT 85 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCC
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCC
Confidence 46899999 9999998 77 7777665211 1112 4999999999998887887 56889998875 89
Q ss_pred EEEEeeChHHHHHHHHHh
Q psy316 127 YVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 127 vIilaV~~~~v~~vl~~i 144 (341)
+|++|+|+....+++...
T Consensus 86 ~V~i~tp~~~h~~~~~~a 103 (383)
T 3oqb_A 86 MFFDAATTQARPGLLTQA 103 (383)
T ss_dssp EEEECSCSSSSHHHHHHH
T ss_pred EEEECCCchHHHHHHHHH
Confidence 999999986555555443
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.8e-05 Score=70.64 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=67.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhh-----hhcCc-CCCc-cccChHHHhhcCCEEEEeeChH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQII-ASAPSERFK-----LHWPE-PMDF-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~-----~~l~~-~~g~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
+||+|+| +|+||+.+++.+.+.. ..++. +++|++... ..+.. ..|+ ...+.++++.++|+||-+++|.
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~~---~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p~ 84 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAAP---DATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPE 84 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHCT---TEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCC---CCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCHH
Confidence 7999999 8999999999998753 23554 578864321 11111 1155 6778888889999999999999
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
...+.+... . ..+.-+|..+.|.+.+++++
T Consensus 85 a~~~~~~~a-l-----~~G~~vVigTTG~s~~~~~~ 114 (272)
T 4f3y_A 85 GTLVHLDAA-L-----RHDVKLVIGTTGFSEPQKAQ 114 (272)
T ss_dssp HHHHHHHHH-H-----HHTCEEEECCCCCCHHHHHH
T ss_pred HHHHHHHHH-H-----HcCCCEEEECCCCCHHHHHH
Confidence 887777654 2 23444454557888765543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.3e-05 Score=75.69 Aligned_cols=78 Identities=12% Similarity=0.088 Sum_probs=61.8
Q ss_pred CCeEEEEcccH---HHHHHHHHHHhcCCCCCCeEE--EEcCChhhhhhcCcCCCc----cccChHHHhhc-------CCE
Q psy316 64 WTKVGFIGAGN---MAQAVATSLIRTGLCIPAQII--ASAPSERFKLHWPEPMDF----ALNDNHRIIKE-------AEY 127 (341)
Q Consensus 64 ~~kIgiIG~G~---mG~aia~~L~~~G~~~~~~V~--v~~r~~e~~~~l~~~~g~----~~~s~~e~~~~-------aDv 127 (341)
++||||||+|. ||...+..+...+. .++. ++++++++++.+.+++|+ .+.|.++++.+ .|+
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~---~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~ 88 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNT---FVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQA 88 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGS---EEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCC---eEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCE
Confidence 36899999999 99999988877652 3554 689999999988877776 46788888865 899
Q ss_pred EEEeeChHHHHHHHHHh
Q psy316 128 VFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 128 IilaV~~~~v~~vl~~i 144 (341)
|++|+|+....+++...
T Consensus 89 V~i~tp~~~H~~~~~~a 105 (398)
T 3dty_A 89 VSIATPNGTHYSITKAA 105 (398)
T ss_dssp EEEESCGGGHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHH
Confidence 99999987666655443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=8.6e-06 Score=79.06 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=56.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c--ccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A--LNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~~~aDvIilaV~~ 134 (341)
.++|+|||+|.||..+++.|...|. .+|++++|++++++.+.+++|. . ..+..+.+..+|+||.|++.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~---~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGV---RAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCC---SEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence 4689999999999999999998884 4899999999888666655665 2 34566778899999999974
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-05 Score=77.21 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=66.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHH-HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLD-SAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~-~vl 141 (341)
.++++|||+|.+|..+++.|...|. +|+++++++.+...... .|....+..+++..+|+|++|.-. ..+. +.+
T Consensus 220 GktV~ViG~G~IGk~vA~~Lra~Ga----~Viv~D~dp~ra~~A~~-~G~~v~~Leeal~~ADIVi~atgt~~lI~~e~l 294 (435)
T 3gvp_A 220 GKQVVVCGYGEVGKGCCAALKAMGS----IVYVTEIDPICALQACM-DGFRLVKLNEVIRQVDIVITCTGNKNVVTREHL 294 (435)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTCEECCHHHHTTTCSEEEECSSCSCSBCHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCC----EEEEEeCChhhhHHHHH-cCCEeccHHHHHhcCCEEEECCCCcccCCHHHH
Confidence 4789999999999999999999885 89999999876554433 365345788999999999997432 2222 444
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
..+ +++.+||.+..|
T Consensus 295 ~~M-------K~gailINvgrg 309 (435)
T 3gvp_A 295 DRM-------KNSCIVCNMGHS 309 (435)
T ss_dssp HHS-------CTTEEEEECSST
T ss_pred Hhc-------CCCcEEEEecCC
Confidence 444 678899988655
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.5e-05 Score=74.57 Aligned_cols=75 Identities=11% Similarity=0.153 Sum_probs=56.0
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC-Cc-cccChHHHhh--cCCEEEEeeChHHH
Q psy316 64 WTKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM-DF-ALNDNHRIIK--EAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~--~aDvIilaV~~~~v 137 (341)
++||||||+|.||.. .+..|.+.. ..+| .++++++++++. . + +. .+.+.++++. +.|+|++|+|+...
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~---~~~l~av~d~~~~~~~~--~-~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H 80 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVP---GLNLAFVASRDEEKVKR--D-LPDVTVIASPEAAVQHPDVDLVVIASPNATH 80 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTST---TEEEEEEECSCHHHHHH--H-CTTSEEESCHHHHHTCTTCSEEEECSCGGGH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCC---CeEEEEEEcCCHHHHHh--h-CCCCcEECCHHHHhcCCCCCEEEEeCChHHH
Confidence 468999999999996 666666542 2355 589999987652 2 3 45 6788899887 78999999998766
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.+++...
T Consensus 81 ~~~~~~a 87 (364)
T 3e82_A 81 APLARLA 87 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.91 E-value=9e-06 Score=77.02 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=71.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI- 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl- 141 (341)
.+++||||+|++|+.+++.+..-|. +|..|+|.+.. ...+ .++...+.++++++||+|.+.+|- ...+.++
T Consensus 141 g~tvGIiG~G~IG~~va~~~~~fg~----~v~~~d~~~~~--~~~~-~~~~~~~l~ell~~sDivslh~Plt~~T~~li~ 213 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMYGLAFGM----KVLCYDVVKRE--DLKE-KGCVYTSLDELLKESDVISLHVPYTKETHHMIN 213 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCH--HHHH-TTCEECCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred CcEEEEECcchHHHHHHHhhcccCc----eeeecCCccch--hhhh-cCceecCHHHHHhhCCEEEEcCCCChhhccCcC
Confidence 4789999999999999999988885 99999986432 1222 344445789999999999999984 2222233
Q ss_pred HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
++. ...+ +++.++|.++=| +..+.|.+.+.
T Consensus 214 ~~~-l~~m--k~~a~lIN~aRG~iVde~aL~~aL~ 245 (334)
T 3kb6_A 214 EER-ISLM--KDGVYLINTARGKVVDTDALYRAYQ 245 (334)
T ss_dssp HHH-HHHS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHH-Hhhc--CCCeEEEecCccccccHHHHHHHHH
Confidence 111 2234 788899988755 34566766665
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.3e-05 Score=75.32 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC--C--Cc-cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP--M--DF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~--~--g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
++||+|||+|.+|.+++..|...++ ..+|.++|+++++++. +... + .+ ...+..+++++||+||++++.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~--~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~ 84 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQT--ANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGA 84 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC--SSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--CCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCC
Confidence 4799999999999999999999885 2489999999876542 2221 1 22 222346678999999999852
Q ss_pred HH----------------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 QY----------------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 ~~----------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
.. +.++.+.+ .++ .++.+|+-.++.+.
T Consensus 85 p~k~g~~r~dl~~~n~~i~~~i~~~i-~~~---~p~a~viv~tNPv~ 127 (318)
T 1y6j_A 85 NRKPGETRLDLAKKNVMIAKEVTQNI-MKY---YNHGVILVVSNPVD 127 (318)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHH-HHH---CCSCEEEECSSSHH
T ss_pred CCCCCcCHHHHHHhhHHHHHHHHHHH-HHh---CCCcEEEEecCcHH
Confidence 11 45666666 554 35666665656544
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.5e-05 Score=73.41 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=65.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc----Cc---CC--Cc-cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW----PE---PM--DF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l----~~---~~--g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
++||+|||+|.+|.+++..|...|+ ..+|.++|+++++++.. .. .. .+ ...+..+++++||+||++++
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~--~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag 83 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSI--VDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAG 83 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCS--CSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--CCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCC
Confidence 4699999999999999999998875 25899999998665521 11 01 22 22245677999999999983
Q ss_pred ----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+ ..++++.+.+ .++ .++.+|+..++.+.
T Consensus 84 ~~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~---~p~a~viv~tNPv~ 127 (317)
T 3d0o_A 84 AAQKPGETRLDLVSKNLKIFKSIVGEV-MAS---KFDGIFLVATNPVD 127 (317)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHH-HHT---TCCSEEEECSSSHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHH-HHh---CCCcEEEEecCcHH
Confidence 2 2244555555 554 35666665666544
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-05 Score=74.91 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=64.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC-----CC--c-cccChHHHhhcCCEEEEe
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP-----MD--F-ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~-----~g--~-~~~s~~e~~~~aDvIila 131 (341)
.+||+|||+|.||.+++..|...|+ . +|.++|+++++++. +... .. + .+.+ .+++++||+||++
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~--~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d-~~a~~~aDiVIia 82 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKEL--G-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND-YAAIEGADVVIVT 82 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--C-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS-GGGGTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--C-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC-HHHHCCCCEEEEc
Confidence 3699999999999999999999885 2 89999999876642 2110 12 2 2344 4789999999999
Q ss_pred eC----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 MK----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V~----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
.. |. .++++.+.+ ..+ .++.+++..++.+.
T Consensus 83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i-~~~---~p~a~iivvtNPvd 128 (324)
T 3gvi_A 83 AGVPRKPGMSRDDLLGINLKVMEQVGAGI-KKY---APEAFVICITNPLD 128 (324)
T ss_dssp CSCCCC-----CHHHHHHHHHHHHHHHHH-HHH---CTTCEEEECCSSHH
T ss_pred cCcCCCCCCCHHHHHHhhHHHHHHHHHHH-HHH---CCCeEEEecCCCcH
Confidence 62 21 133444455 444 46777777777655
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.6e-05 Score=72.93 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=63.9
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---------CC--c-cccChHHHhhcCCEEEEeeC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---------MD--F-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---------~g--~-~~~s~~e~~~~aDvIilaV~ 133 (341)
||+|||+|.||.+++..|+..++ .+|.++|+++++++....+ .. + .+.+. +.+++||+||++..
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l---~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGY---DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC---SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhCCC---CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCC
Confidence 79999999999999999988874 4799999998766532111 12 2 22454 67899999999963
Q ss_pred hH----------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 PQ----------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ~~----------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
.. .++++++++ ..+. ++.+++..++.+.
T Consensus 77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i-~~~~---p~a~iiv~tNPv~ 120 (308)
T 2d4a_B 77 IGRKPGMTREQLLEANANTMADLAEKI-KAYA---KDAIVVITTNPVD 120 (308)
T ss_dssp CCCCSSCCTHHHHHHHHHHHHHHHHHH-HHHC---TTCEEEECCSSHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHC---CCeEEEEeCCchH
Confidence 21 256666666 5543 5656665666544
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.7e-05 Score=72.46 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=55.5
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC-Cc-cccChHHHhhc--CCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM-DF-ALNDNHRIIKE--AEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~~--aDvIilaV~~~~v~ 138 (341)
+||||||+|.||.. .+..|.+.. ..+| .+++++++++ ++++ ++ .+.|.++++.+ .|+|++|+|+....
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~---~~~l~av~d~~~~~~---~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 79 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNP---HFELYKIVERSKELS---KERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHY 79 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHCT---TEEEEEEECSSCCGG---GTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHH
T ss_pred eEEEEECCCHHHHHHHHHHHhhCC---CeEEEEEEcCCHHHH---HHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHH
Confidence 68999999999997 677776652 2355 5899998763 3446 45 77888999876 89999999987666
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+++...
T Consensus 80 ~~~~~a 85 (362)
T 3fhl_A 80 EYAGMA 85 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.2e-05 Score=73.34 Aligned_cols=93 Identities=12% Similarity=0.199 Sum_probs=63.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh----hcCcC--CCc-cccChHHHhhcCCEEEEee-----
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL----HWPEP--MDF-ALNDNHRIIKEAEYVFLAM----- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~----~l~~~--~g~-~~~s~~e~~~~aDvIilaV----- 132 (341)
+||+|||+|+||..++..|+..|+ ..+|.++|++++ +. .+..- -.+ .+.+. +.+++||+||++.
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~g~--~~ev~L~Di~~~-~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~p 90 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAKGI--ADRLVLLDLSEG-TKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGS 90 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECCC------CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC--CCEEEEEcCCcc-hHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCC
Confidence 689999999999999999999885 358999999875 22 11110 123 34565 7789999999997
Q ss_pred --------Ch--HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 --------KP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 --------~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
.- ..+.++++++ ..+. ++.+++..++.++
T Consensus 91 G~tR~dl~~~n~~i~~~i~~~i-~~~~---p~a~iiv~sNP~~ 129 (303)
T 2i6t_A 91 SQSYLDVVQSNVDMFRALVPAL-GHYS---QHSVLLVASQPVE 129 (303)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH-HHHT---TTCEEEECSSSHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHhC---CCeEEEEcCChHH
Confidence 11 2356666776 6554 6667766777554
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=2e-05 Score=74.56 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCC------------------c-cccChHHHh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMD------------------F-ALNDNHRII 122 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g------------------~-~~~s~~e~~ 122 (341)
|++||||||+|.||..+++.|.+... .+| .+++++++++..+.+.+| + ...+..+++
T Consensus 1 M~irVgIiG~G~iG~~~~r~l~~~~~---~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~ 77 (334)
T 2czc_A 1 MKVKVGVNGYGTIGKRVAYAVTKQDD---MELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (334)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTT---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred CCcEEEEEeEhHHHHHHHHHHhcCCC---CEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence 55799999999999999999987532 344 567887776654443232 1 234677777
Q ss_pred hcCCEEEEeeChHHHHHHH
Q psy316 123 KEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 123 ~~aDvIilaV~~~~v~~vl 141 (341)
.+.|+||+|+|+....+..
T Consensus 78 ~~vDvV~~aTp~~~h~~~a 96 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNK 96 (334)
T ss_dssp TTCSEEEECCSTTHHHHHH
T ss_pred cCCCEEEECCCccccHHHH
Confidence 8999999999986544433
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=4.7e-05 Score=71.83 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC----CCc-cccChHHHhhcCCEEEEeeC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP----MDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~----~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
..+||+|||+|.+|.+++..|+..+++ .+|.++|+++++++. +... ..+ ...+..+++++||+||++..
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~--~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag 85 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIA--QEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAG 85 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCC--CEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCC
Confidence 347999999999999999999888753 589999999877653 2211 122 22345677999999999973
Q ss_pred ----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 134 ----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 134 ----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
| ..++++.+.+ ..+ .++.+|+..++.+..
T Consensus 86 ~~~k~g~~R~dl~~~n~~i~~~i~~~i-~~~---~p~a~iiv~tNPv~~ 130 (326)
T 2zqz_A 86 APQKPGETRLDLVNKNLKILKSIVDPI-VDS---GFNGIFLVAANPVDI 130 (326)
T ss_dssp CC-----CHHHHHHHHHHHHHHHHHHH-HHH---TCCSEEEECSSSHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEeCCcHHH
Confidence 2 1234444555 444 356666667666553
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.9e-05 Score=74.30 Aligned_cols=94 Identities=15% Similarity=0.306 Sum_probs=64.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC-----CCc--cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP-----MDF--ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~-----~g~--~~~s~~e~~~~aDvIilaV~ 133 (341)
+||+|||+|.||.+++..|...|+ . +|.++|+++++++. +... ... ..++..+++++||+||++..
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~~~--~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIKQL--G-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAG 82 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--C-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--c-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCC
Confidence 699999999999999999999885 2 89999999877542 2221 122 22233578999999999962
Q ss_pred ----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
| ..++++.+.+ ..+ .++.+++..++.+.
T Consensus 83 ~p~k~G~~R~dl~~~N~~i~~~i~~~i-~~~---~p~a~vivvtNPvd 126 (321)
T 3p7m_A 83 VPRKPGMSRDDLLGINIKVMQTVGEGI-KHN---CPNAFVICITNPLD 126 (321)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHH-HHH---CTTCEEEECCSSHH
T ss_pred cCCCCCCCHHHHHHHhHHHHHHHHHHH-HHH---CCCcEEEEecCchH
Confidence 2 1234444555 444 36667776666544
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=9.3e-06 Score=78.06 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=56.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~ 136 (341)
+.||+|||+| +|...+..+.+.. ...++ .+++|++++++++++++|+ .++|.++++++.|++++++|...
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~--~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPP--EGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCC--TTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--C
T ss_pred CCEEEEEehH-HHHHHHHHHHhCC--CCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcc
Confidence 5799999999 8988777765532 11354 4899999999999988999 78899999999999999998754
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.5e-05 Score=73.70 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=65.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC--C--Cc-cccChHHHhhcCCEEEEeeC-
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP--M--DF-ALNDNHRIIKEAEYVFLAMK- 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~--~--g~-~~~s~~e~~~~aDvIilaV~- 133 (341)
.+||+|||+|.+|++++..|+..|++ .+|.++|+++++++. |..- + ++ ...+..+.+++||+||++..
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~--~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIA--QEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC--SEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC--CeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 36999999999999999999998863 489999999887662 2210 1 23 33445677999999999862
Q ss_pred ---hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ---PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ---~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
|. .++++.+.+ ..+ .++.+++..++.+.
T Consensus 87 ~~kpG~tR~dL~~~N~~I~~~i~~~i-~~~---~p~a~ilvvtNPvd 129 (326)
T 3vku_A 87 PQKPGETRLDLVNKNLKILKSIVDPI-VDS---GFNGIFLVAANPVD 129 (326)
T ss_dssp C----------------CHHHHHHHH-HTT---TCCSEEEECSSSHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHH-Hhc---CCceEEEEccCchH
Confidence 21 123444445 443 35667776766554
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.5e-05 Score=74.79 Aligned_cols=91 Identities=10% Similarity=0.082 Sum_probs=62.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c------ccChHHHhhcCCEEEEeeChHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A------LNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~------~~s~~e~~~~aDvIilaV~~~~ 136 (341)
.++|+|+|+|.+|..+++.+...|. +|++++|++++++.+.+.+|. . ..+..+.+..+|+||.+++...
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga----~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~ 241 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGA----QVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG 241 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence 3789999999999999999999984 899999999887766543443 1 1234566788999999997432
Q ss_pred --HHHH-HHHhhhcccccCCCcEEEEec
Q psy316 137 --LDSA-IQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 137 --v~~v-l~~i~~~~l~~~~~~iIVs~~ 161 (341)
...+ .++. .+.+ +++.+||.+.
T Consensus 242 ~~~~~li~~~~-l~~m--k~gg~iV~v~ 266 (369)
T 2eez_A 242 AKAPKLVTRDM-LSLM--KEGAVIVDVA 266 (369)
T ss_dssp ----CCSCHHH-HTTS--CTTCEEEECC
T ss_pred cccchhHHHHH-HHhh--cCCCEEEEEe
Confidence 1111 1222 3344 6677888764
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.1e-05 Score=73.80 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=61.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhh-hhhcCcCCCc-c-ccChHHHhh-----cCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERF-KLHWPEPMDF-A-LNDNHRIIK-----EAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~-~~~l~~~~g~-~-~~s~~e~~~-----~aDvIilaV~~ 134 (341)
++||+|||+|++|..+++.|.+.. +..+ +.++++++++ ...+.+++|+ . ..+.+++++ +.|+||+|+|+
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~~--~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~ 81 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRNA--KYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA 81 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHC--SSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred CCEEEEEcCcHHHHHHHHHHHhhC--cCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence 468999999999999999986621 1123 4578999887 5566555776 3 344555543 57999999998
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
....+..... ... .+++.|++.
T Consensus 82 ~~h~~~a~~a-l~a---~~Gk~Vi~e 103 (312)
T 1nvm_B 82 SAHVQNEALL-RQA---KPGIRLIDL 103 (312)
T ss_dssp HHHHHHHHHH-HHH---CTTCEEEEC
T ss_pred HHHHHHHHHH-HHh---CCCCEEEEc
Confidence 7666665544 221 126666653
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5.5e-05 Score=69.59 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=64.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhh--hhcCc-----CCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFK--LHWPE-----PMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~--~~l~~-----~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
|||+|+|+ |+||+.+++.+.+.. ..++. ++++++++. ..+.+ ..++ ...+.++++..+|+||-++.|
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~---~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~p 82 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALE---GVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRP 82 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHST---TEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCC---CCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCCh
Confidence 79999999 999999999887542 24655 788876431 11111 1244 456677777889999977788
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHh
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKK 172 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~ 172 (341)
....+.+... . ..+.-+|.-..|.+.++.++.
T Consensus 83 ~~~~~~~~~a-~-----~~G~~vVigTtG~~~e~~~~L 114 (273)
T 1dih_A 83 EGTLNHLAFC-R-----QHGKGMVIGTTGFDEAGKQAI 114 (273)
T ss_dssp HHHHHHHHHH-H-----HTTCEEEECCCCCCHHHHHHH
T ss_pred HHHHHHHHHH-H-----hCCCCEEEECCCCCHHHHHHH
Confidence 7777766554 2 234334443457887655443
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.7e-05 Score=73.08 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=62.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC--hhhhhhcCcC---------CC--ccccChHHHhhcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS--ERFKLHWPEP---------MD--FALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~--~e~~~~l~~~---------~g--~~~~s~~e~~~~aDvIila 131 (341)
+||+|||+|.||.+++..|...|+ .+|.++|++ +++++....+ .. +...+..+.+++||+||++
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~g~---~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIia 85 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQKEL---ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVIT 85 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC---CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEe
Confidence 589999999999999999999884 389999998 4444321110 11 2222335778999999999
Q ss_pred e----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 M----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. +|. .++++.+.+ ..+ .++.+++..++.+.
T Consensus 86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i-~~~---~p~a~vlvvsNPvd 131 (315)
T 3tl2_A 86 AGIARKPGMSRDDLVATNSKIMKSITRDI-AKH---SPNAIIVVLTNPVD 131 (315)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHH---CTTCEEEECCSSHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHh---CCCeEEEECCChHH
Confidence 7 221 234444555 444 46777777767654
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=73.99 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=62.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHH-HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLD-SAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~-~vl 141 (341)
.+++.|||+|.+|.+++..|.+.|. +|++++|++++++.+. ++++ .. +.++ +.++|+||-|+|..... ..+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~----~v~V~nRt~~ka~~la-~~~~~~~-~~~~-l~~~DiVInaTp~Gm~~~~~l 190 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGL----QVSVLNRSSRGLDFFQ-RLGCDCF-MEPP-KSAFDLIINATSASLHNELPL 190 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCTTHHHHH-HHTCEEE-SSCC-SSCCSEEEECCTTCCCCSCSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHH-HCCCeEe-cHHH-hccCCEEEEcccCCCCCCCCC
Confidence 5789999999999999999999983 9999999999998887 5665 22 2222 23899999999843100 001
Q ss_pred --HHhhhcccccCCCcEEEEecC
Q psy316 142 --QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 --~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+ ...+ +++.+++++.-
T Consensus 191 ~~~~l-~~~l--~~~~~v~D~vY 210 (269)
T 3phh_A 191 NKEVL-KGYF--KEGKLAYDLAY 210 (269)
T ss_dssp CHHHH-HHHH--HHCSEEEESCC
T ss_pred ChHHH-HhhC--CCCCEEEEeCC
Confidence 011 1124 45678888753
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=2.2e-05 Score=74.14 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=66.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------C----Cc-cccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------M----DF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------~----g~-~~~s~~e~~~~aDvIilaV 132 (341)
.+||+|||+|.||..++..|+..|++ ++|.++|+++++++....+ + .+ ...+.++ +++||+||++.
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~--~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIita 97 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLA--DEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITA 97 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCC--SEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeC
Confidence 47999999999999999999998853 4899999998766532110 1 12 2345544 89999999985
Q ss_pred C----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 K----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ~----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
. | ..++++.+++ ..+ .++.+++..++.+.+
T Consensus 98 G~p~kpG~tR~dll~~N~~I~k~i~~~I-~k~---~P~a~ilvvtNPvdi 143 (330)
T 3ldh_A 98 GARQQEGESRLNLVQRNVNIFKFIIPNI-VKH---SPDCLKELHPELGTD 143 (330)
T ss_dssp SCCCCSSCCTTGGGHHHHHHHHHHHHHH-HHH---CTTCEEEECSSSHHH
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHH-Hhh---CCCceEEeCCCccHH
Confidence 2 1 2245566666 554 467777777776553
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.78 E-value=2.5e-05 Score=76.57 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=60.8
Q ss_pred CeEEEEcc----cHHHHHHHHHHHhc-CCCCCCeE-EEEcCChhhhhhcCcCCCc----cccChHHHhh--cCCEEEEee
Q psy316 65 TKVGFIGA----GNMAQAVATSLIRT-GLCIPAQI-IASAPSERFKLHWPEPMDF----ALNDNHRIIK--EAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~----G~mG~aia~~L~~~-G~~~~~~V-~v~~r~~e~~~~l~~~~g~----~~~s~~e~~~--~aDvIilaV 132 (341)
+||||||+ |.||..++..|.+. . ..+| .++++++++++.+++++|+ .+.+.++++. +.|+|++|+
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~---~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~t 97 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSS---QFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAI 97 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTT---TEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECS
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCC---CeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeC
Confidence 68999999 99999999999886 2 1354 6899999998888776664 4678888886 689999999
Q ss_pred ChHHHHHHHHH
Q psy316 133 KPQYLDSAIQG 143 (341)
Q Consensus 133 ~~~~v~~vl~~ 143 (341)
|+....+++..
T Consensus 98 p~~~H~~~~~~ 108 (438)
T 3btv_A 98 QVASHYEVVMP 108 (438)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 98765555543
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.6e-05 Score=72.54 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=54.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCCh-hhhhhcC---cCCCc---cccChHHHhh--cCCEEEEee
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSE-RFKLHWP---EPMDF---ALNDNHRIIK--EAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~-e~~~~l~---~~~g~---~~~s~~e~~~--~aDvIilaV 132 (341)
|++||||||+|.+|...++.| ..+ .+| .++++++ ++++.++ +++|+ .+.|.+++++ +.|+|++|+
T Consensus 1 M~~rvgiiG~G~~~~~~~~~l-~~~----~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~t 75 (337)
T 3ip3_A 1 MSLKICVIGSSGHFRYALEGL-DEE----CSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINT 75 (337)
T ss_dssp -CEEEEEECSSSCHHHHHTTC-CTT----EEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECS
T ss_pred CceEEEEEccchhHHHHHHhc-CCC----cEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeC
Confidence 678999999999998777776 333 355 4799887 3444332 23453 6788899887 489999999
Q ss_pred ChHHHHHHHHHh
Q psy316 133 KPQYLDSAIQGL 144 (341)
Q Consensus 133 ~~~~v~~vl~~i 144 (341)
|+....+++...
T Consensus 76 p~~~H~~~~~~a 87 (337)
T 3ip3_A 76 VFSLNGKILLEA 87 (337)
T ss_dssp SHHHHHHHHHHH
T ss_pred CcchHHHHHHHH
Confidence 987666655443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=4.1e-05 Score=74.26 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=63.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-ccc--------------------------
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALN-------------------------- 116 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~-------------------------- 116 (341)
..+|+|||+|.+|..+++.+...|. +|+++||++++++.+.+ +|. ...
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga----~V~v~D~~~~~~~~~~~-lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 246 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGA----IVRAFDTRPEVKEQVQS-MGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEM 246 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCGGGHHHHHH-TTCEECCC--------CCHHHHHHSHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHH-cCCEEEEecccccccccccchhhccHHHHHHHH
Confidence 4689999999999999999998884 89999999988777644 565 221
Q ss_pred -ChHHHhhcCCEEEEe--eCh----HHH-HHHHHHhhhcccccCCCcEEEEec
Q psy316 117 -DNHRIIKEAEYVFLA--MKP----QYL-DSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 117 -s~~e~~~~aDvIila--V~~----~~v-~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+..+.+..+|+||.+ +|. ..+ ++.++. + +++.+||++.
T Consensus 247 ~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~-----m--k~g~vIVdva 292 (401)
T 1x13_A 247 ELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDS-----M--KAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHT-----S--CTTCEEEETT
T ss_pred HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhc-----C--CCCcEEEEEc
Confidence 245667789999999 441 212 344443 4 6788888875
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00013 Score=68.15 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=57.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c-cccChHHHh----------hcCCEEEEe
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F-ALNDNHRII----------KEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~-~~~s~~e~~----------~~aDvIila 131 (341)
+||||||+ |.+|...+..|.+.+. .-+.++++++++. .+.+.++ . ...+.++++ .+.|+|++|
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~---~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~ 79 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGG---VLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIA 79 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTC---EEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred eEEEEECCChHHHHHHHHHHHhCCC---EEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEEC
Confidence 69999999 7899999999988763 3456899998774 3444443 4 667777776 478999999
Q ss_pred eChHHHHHHHHHh
Q psy316 132 MKPQYLDSAIQGL 144 (341)
Q Consensus 132 V~~~~v~~vl~~i 144 (341)
+|+....++....
T Consensus 80 tP~~~H~~~~~~a 92 (312)
T 3o9z_A 80 SPNHLHYPQIRMA 92 (312)
T ss_dssp SCGGGHHHHHHHH
T ss_pred CCchhhHHHHHHH
Confidence 9998766665543
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=68.16 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=57.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c-cccChHHHh-----------hcCCEEE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F-ALNDNHRII-----------KEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~-~~~s~~e~~-----------~~aDvIi 129 (341)
++||||||+ |.||...+..|.+.+. .-+.++++++++. .+.++++ . ...+.++++ .+.|+|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~---~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~ 78 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGN---CLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVS 78 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTC---EEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCC---EEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEE
Confidence 379999999 7899999999988763 3456899998764 3444453 4 667877776 4689999
Q ss_pred EeeChHHHHHHHHHh
Q psy316 130 LAMKPQYLDSAIQGL 144 (341)
Q Consensus 130 laV~~~~v~~vl~~i 144 (341)
+|+|+....++....
T Consensus 79 I~tP~~~H~~~~~~a 93 (318)
T 3oa2_A 79 ICSPNYLHYPHIAAG 93 (318)
T ss_dssp ECSCGGGHHHHHHHH
T ss_pred ECCCcHHHHHHHHHH
Confidence 999997666665443
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=2.4e-05 Score=74.93 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=54.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh-cCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK-EAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~-~aDvIilaV~~~ 135 (341)
.++|+|+|+|+||..+++.|.+.|. +|+++|+++++++.+.++++. .. +..+++. +||+++.|....
T Consensus 173 GktV~V~G~G~VG~~~A~~L~~~Ga----kVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~~ 241 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLNTEGA----KLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGA 241 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSC
T ss_pred cCEEEEECchHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchHH
Confidence 4789999999999999999999995 899999999988877765666 33 4445555 899999886443
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0001 Score=70.00 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=54.5
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC-Cc-cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM-DF-ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
+||||||+|.||.. .+..|.+. +..+| .+++|+++++. +++ ++ .+.+.++++. +.|+|++|+|+....
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~---~~~~l~av~d~~~~~~~---~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 79 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL---DEYQISKIMTSRTEEVK---RDFPDAEVVHELEEITNDPAIELVIVTTPSGLHY 79 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC---TTEEEEEEECSCHHHHH---HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHH
T ss_pred ceEEEEccCHHHHHHHHHHHhhC---CCeEEEEEEcCCHHHHH---hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 68999999999997 66666554 22355 58999987743 224 45 6788899887 689999999987666
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+++...
T Consensus 80 ~~~~~a 85 (358)
T 3gdo_A 80 EHTMAC 85 (358)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.73 E-value=4.1e-05 Score=71.73 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=65.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc----CcC----CCc-cccChHHHhhcCCEEEEeeCh-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW----PEP----MDF-ALNDNHRIIKEAEYVFLAMKP- 134 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l----~~~----~g~-~~~s~~e~~~~aDvIilaV~~- 134 (341)
|||+|||+|.+|.+++..|+..+. ..+|.++|+++++++.. ... ..+ ...+..+++++||+||++...
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~--~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~ 78 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGV--AREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVA 78 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--CSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--CCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 689999999999999999998875 35899999998776632 111 022 222346779999999998731
Q ss_pred ---------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 135 ---------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 135 ---------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
..++++.+.+ ..+ .++.+|+..++.+.
T Consensus 79 ~~~g~~r~dl~~~n~~i~~~i~~~i-~~~---~p~a~iiv~tNPv~ 120 (310)
T 2xxj_A 79 QRPGETRLQLLDRNAQVFAQVVPRV-LEA---APEAVLLVATNPVD 120 (310)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH-HHH---CTTCEEEECSSSHH
T ss_pred CCCCcCHHHHHHhhHHHHHHHHHHH-HHH---CCCcEEEEecCchH
Confidence 1244455555 444 35666666766655
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.73 E-value=5.1e-05 Score=67.53 Aligned_cols=89 Identities=11% Similarity=0.006 Sum_probs=59.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cChH---HH-hhcCCEEEEee
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---NDNH---RI-IKEAEYVFLAM 132 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s~~---e~-~~~aDvIilaV 132 (341)
.+.++|.|+|+|.+|..+++.|.+.| + |+++++++++++.+. .++ .. .+.+ ++ +.++|.||+++
T Consensus 7 ~~~~~viI~G~G~~G~~la~~L~~~g----~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (234)
T 2aef_A 7 AKSRHVVICGWSESTLECLRELRGSE----V-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDL 79 (234)
T ss_dssp ---CEEEEESCCHHHHHHHHHSTTSE----E-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred CCCCEEEEECCChHHHHHHHHHHhCC----e-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence 35678999999999999999998877 6 999999998887665 243 21 2222 22 56899999999
Q ss_pred ChHHHHHHHHHhhhcccccCCC-cEEEEe
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSS-RCIISM 160 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~-~iIVs~ 160 (341)
+++...-.+... ...+ +++ ++|+-+
T Consensus 80 ~~d~~n~~~~~~-a~~~--~~~~~iia~~ 105 (234)
T 2aef_A 80 ESDSETIHCILG-IRKI--DESVRIIAEA 105 (234)
T ss_dssp SCHHHHHHHHHH-HHHH--CSSSEEEEEC
T ss_pred CCcHHHHHHHHH-HHHH--CCCCeEEEEE
Confidence 876544333333 2334 455 555544
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=7.6e-05 Score=72.66 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccCh--HHH-----hhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDN--HRI-----IKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~--~e~-----~~~aDvIilaV~~ 134 (341)
.++|.|||+|++|..+++.|.+.|+ +|+++++++++++.+++ .|+ ...|. .+. +.++|+||++++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~----~vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~ 78 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV----KMVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 78 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC----CEEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECCSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECCCC
Confidence 3579999999999999999999985 99999999999988876 465 22221 222 4689999999986
Q ss_pred HHHH
Q psy316 135 QYLD 138 (341)
Q Consensus 135 ~~v~ 138 (341)
....
T Consensus 79 ~~~n 82 (413)
T 3l9w_A 79 PQTN 82 (413)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5433
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.9e-05 Score=70.38 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=53.2
Q ss_pred CCCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC-C---Cc-cccChHHHhhcCCEEEE
Q psy316 61 VPMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP-M---DF-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 61 ~~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~-~---g~-~~~s~~e~~~~aDvIil 130 (341)
+...+||+|||+ |.+|+.++..++..|. ..+|.++|+++++++. |..- + .+ ...+..+++++||+||+
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~--~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvi 82 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRL--TPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVS 82 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTC--CSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCC--CCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEE
Confidence 444679999998 9999999999998885 2489999999876553 2210 1 23 34567788999999999
Q ss_pred ee
Q psy316 131 AM 132 (341)
Q Consensus 131 aV 132 (341)
+.
T Consensus 83 ta 84 (343)
T 3fi9_A 83 SG 84 (343)
T ss_dssp CC
T ss_pred cc
Confidence 86
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=4e-05 Score=71.25 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=64.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCc---CCC----ccccChHHHhhcCCEEEEee-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPE---PMD----FALNDNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~---~~g----~~~~s~~e~~~~aDvIilaV- 132 (341)
|||+|||+|++|++++..|+.++.+ .++.++|.++++++- |.. -++ +...+..+.+++||+||++-
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~--~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG 78 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAG 78 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC--CEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecC
Confidence 7999999999999999999988863 589999998865442 211 011 12223346789999999985
Q ss_pred ---ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 ---KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ---~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+|. .++++.+++ ..+ .++.+++-+++.++.
T Consensus 79 ~prkpGmtR~dLl~~Na~I~~~i~~~i-~~~---~p~aivlvvsNPvd~ 123 (294)
T 2x0j_A 79 LARKPGMTRLDLAHKNAGIIKDIAKKI-VEN---APESKILVVTNPMDV 123 (294)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHH-HTT---STTCEEEECSSSHHH
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHH-Hhc---CCceEEEEecCcchh
Confidence 231 123444455 444 367777777777653
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0002 Score=66.27 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=67.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
.+||+|+|+ |+||..+++.+.+.|+ + |+..++. +.. .+.+|+ ...+..++.. .+|++++++||....
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~----~~v~~VnP~--~~g--~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~ 78 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGT----KIVAGVTPG--KGG--MEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAA 78 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC----EEEEEECTT--CTT--CEETTEEEESSHHHHHHHSCCSEEEECCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCC----eEEEEECCC--CCC--ceECCEEeeCCHHHHhhcCCCCEEEEecCHHHHH
Confidence 478999998 9999999999999885 5 3345543 211 112577 7788888888 899999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHH
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLET 168 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~ 168 (341)
+++++. ... .- +.+|-++.|++.+.
T Consensus 79 ~~~~ea-~~~---Gi-~~vVi~t~G~~~~~ 103 (288)
T 1oi7_A 79 DAALEA-AHA---GI-PLIVLITEGIPTLD 103 (288)
T ss_dssp HHHHHH-HHT---TC-SEEEECCSCCCHHH
T ss_pred HHHHHH-HHC---CC-CEEEEECCCCCHHH
Confidence 999876 331 11 33444667888653
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.2e-05 Score=72.16 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=53.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.+++.|||+|.+|.+++..|.+.|. .+|++++|++++++.+.++++. ...+.. +.++|+||-|+|..
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~---~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g 186 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGF---EKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG 186 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTC---CCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence 4689999999999999999999984 5899999999999888765554 221221 46799999999864
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00033 Score=65.39 Aligned_cols=93 Identities=11% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCeEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 64 WTKVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
+++++|| |+ |++|..++++|.+.|+ + .++..||.+.. .+-.|+ ...+..++.+ ..|++++++|+....
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~G~----~-~v~~VnP~~~g--~~i~G~~vy~sl~el~~~~~vD~avI~vP~~~~~ 85 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEYGT----N-LVGGTTPGKGG--KTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAA 85 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTC----E-EEEEECTTCTT--CEETTEEEESSHHHHHHHHCCCEEEECCCHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHCCC----c-EEEEeCCCcCc--ceECCeeeechHHHhhhcCCCCEEEEecCHHHHH
Confidence 4678999 99 9999999999999995 5 33444444321 112477 7778888887 899999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHH
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLET 168 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~ 168 (341)
+++++. ... .- +.+|.++.|++.+.
T Consensus 86 ~~~~e~-i~~---Gi-~~iv~~t~G~~~~~ 110 (305)
T 2fp4_A 86 AAINEA-IDA---EV-PLVVCITEGIPQQD 110 (305)
T ss_dssp HHHHHH-HHT---TC-SEEEECCCCCCHHH
T ss_pred HHHHHH-HHC---CC-CEEEEECCCCChHH
Confidence 999886 321 12 35555778988653
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.67 E-value=2.5e-05 Score=71.89 Aligned_cols=92 Identities=12% Similarity=0.186 Sum_probs=63.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC---ccccChHHHh-hcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD---FALNDNHRII-KEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g---~~~~s~~e~~-~~aDvIilaV~~~~v~~ 139 (341)
.+++.|+|+|.+|.+++..|.+.|. .+|++++|++++++.++++++ +...+..++. .++|+||-|+|.....+
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~G~---~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~ 196 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQAGP---SELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTAD 196 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTCC---SEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTC
T ss_pred CCEEEEECccHHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCC
Confidence 4689999999999999999999984 589999999999888765433 2111222322 68999999998643211
Q ss_pred HHHHhhhcccccCCCcEEEEec
Q psy316 140 AIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
. ..+....+ +++.+|+++.
T Consensus 197 ~-~~i~~~~l--~~~~~V~Dlv 215 (272)
T 3pwz_A 197 L-PPLPADVL--GEAALAYELA 215 (272)
T ss_dssp C-CCCCGGGG--TTCSEEEESS
T ss_pred C-CCCCHHHh--CcCCEEEEee
Confidence 0 01102245 6777888875
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00018 Score=67.65 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=54.3
Q ss_pred CeEEEEcccHHHH-HHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhhc---CCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQ-AVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIKE---AEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~-aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~---aDvIilaV~~~~v~ 138 (341)
+||||||+|.||. ..+..|.+.. ..+| .+++|++++ +|+ ...+.++++.+ .|+|++|+|+....
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~~---~~~lvav~d~~~~~-------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~ 95 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKNA---NFKLVATASRHGTV-------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRY 95 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHCT---TEEEEEEECSSCCC-------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHH
T ss_pred ceEEEEecCHHHHHHHHHHHHhCC---CeEEEEEEeCChhh-------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHH
Confidence 6999999999998 7888888753 2354 578988542 577 77888898765 89999999988766
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+++...
T Consensus 96 ~~~~~a 101 (330)
T 4ew6_A 96 EAAYKA 101 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=68.82 Aligned_cols=95 Identities=14% Similarity=0.179 Sum_probs=65.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC--C----Cc-cccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP--M----DF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~--~----g~-~~~s~~e~~~~aDvIilaV 132 (341)
.+||+|||+|.||.+++..|+..|+ ..+|.++|+++++++. |..- + .+ ...+. +.+++||+||++.
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~~~--~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~a 95 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMKDL--ADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIITA 95 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTC--CSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--CceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEcc
Confidence 4689999999999999999999885 3589999999876653 2210 1 12 23344 4689999999986
Q ss_pred --C--h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 --K--P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 --~--~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
| | ..++++.+.+ ..+ .++.+++..++.+.
T Consensus 96 G~~~kpG~tR~dL~~~N~~I~~~i~~~i-~~~---~p~a~vlvvtNPvd 140 (331)
T 4aj2_A 96 GARQQEGESRLNLVQRNVNIFKFIIPNV-VKY---SPQCKLLIVSNPVD 140 (331)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHH-HHH---CTTCEEEECSSSHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHH-HHH---CCCeEEEEecChHH
Confidence 2 2 1234444555 544 46777777777655
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.1e-05 Score=72.75 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=62.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC----ccccChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD----FALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g----~~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.+++.|+|+|.+|.+++..|.+.|. .+|++++|++++++.+.++++ +...+..++..++|+||-|+|.....+
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~---~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~ 202 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQP---ASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE 202 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCC---SEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred CCEEEEECchHHHHHHHHHHHhcCC---CeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence 4689999999999999999999984 589999999999887765432 212233344467899999998643221
Q ss_pred HHHHhhhcccccCCCcEEEEec
Q psy316 140 AIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
. ..+....+ +++.+|+++.
T Consensus 203 ~-~~l~~~~l--~~~~~V~Dlv 221 (281)
T 3o8q_A 203 L-PAIDPVIF--SSRSVCYDMM 221 (281)
T ss_dssp --CSCCGGGE--EEEEEEEESC
T ss_pred C-CCCCHHHh--CcCCEEEEec
Confidence 1 01101235 5667777764
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.63 E-value=4e-05 Score=70.84 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=53.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
.+++.|+|+|.+|.+++..|.+.|. .+|++++|++++++.++++++. ...+..+ + ++|+||-|+|.
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~~G~---~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~ 188 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKDNFA---KDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPK 188 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHHTTC---SEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCcc
Confidence 5789999999999999999999984 5899999999999998876543 2333333 4 79999999975
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00091 Score=61.09 Aligned_cols=164 Identities=14% Similarity=0.153 Sum_probs=110.7
Q ss_pred Cc-cccChHHHhhcCCEEEEeeChHH-HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEE
Q psy316 112 DF-ALNDNHRIIKEAEYVFLAMKPQY-LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRV 189 (341)
Q Consensus 112 g~-~~~s~~e~~~~aDvIilaV~~~~-v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~ 189 (341)
|+ +++|..|+++++|++|+-+|-.. -.++++.+ .+++ +.|.+|.+. ..++.-.+...|.. . .+++.. |..+
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakki-i~~l--pEgAII~nT-CTipp~~ly~~le~-l-~R~Dvg-IsS~ 200 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKF-ADAI--PEGAIVTHA-CTIPTTKFAKIFKD-L-GREDLN-ITSY 200 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHH-GGGS--CTTCEEEEC-SSSCHHHHHHHHHH-T-TCTTSE-EEEC
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHH-HhhC--cCCCEEecc-cCCCHHHHHHHHHH-h-CcccCC-eecc
Confidence 66 67788899999999999999643 56788888 8888 788777765 45776555444432 0 013445 6666
Q ss_pred cCC-chhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCe-EEcCCCchhHHHHHhcchHHHHHHHHHHHHHH---H-
Q psy316 190 MPN-TAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIV-EIIPESMMNSFGAIAGSGCAYLFLVMDAMADG---A- 263 (341)
Q Consensus 190 mpn-~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~-~~v~e~~~d~~~al~g~gpa~~~~~~eal~ea---~- 263 (341)
+|. .|.. +|.+...-+ -.++ ++.+++.+|.++.|.. +.++.+....+.-+ +.+..+....++.+. +
T Consensus 201 HPaaVPgt--~Gq~~~g~~-yAtE--EqIeklveLaksa~k~ay~vPAdl~SpV~DM---gs~vTAv~~AGiL~Y~~~vt 272 (358)
T 2b0j_A 201 HPGCVPEM--KGQVYIAEG-YASE--EAVNKLYEIGKIARGKAFKMPANLIGPVCDM---CSAVTATVYAGLLAYRDAVT 272 (358)
T ss_dssp BCSSCTTT--CCCEEEEES-SSCH--HHHHHHHHHHHHHHSCEEEEEHHHHHHHHST---THHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC--CCccccccc-cCCH--HHHHHHHHHHHHhCCCeEecchhhccchhhh---HHHHHHHHHHHHHHHHHHHH
Confidence 664 3333 344443333 3566 9999999999999876 45677655544433 334444444455553 2
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHh
Q psy316 264 VKQGIPRDMALRIGAQLLKGSGQLVHK 290 (341)
Q Consensus 264 ~~~Gl~~~~a~~lv~~~~~gs~~l~~~ 290 (341)
.-.|-|.+-+...+..++.-.+.+++.
T Consensus 273 kIlgAP~~mie~q~~esL~tiasLve~ 299 (358)
T 2b0j_A 273 KILGAPADFAQMMADEALTQIHNLMKE 299 (358)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 247999999999999999888888876
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00041 Score=64.34 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=66.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~ 139 (341)
..++.|+|+ |+||+.+++.|.+.|+ + .++..+|.+... +-+|+ .+.+..++.. .+|++++++||..+.+
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g~----~-~V~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~ 85 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECGT----K-IVGGVTPGKGGQ--NVHGVPVFDTVKEAVKETDANASVIFVPAPFAKD 85 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTTC----C-EEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCC----e-EEEEeCCCCCCc--eECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHH
Confidence 457888899 9999999999999885 4 344444543211 11577 7788888887 8999999999999999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHHH
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLET 168 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~~ 168 (341)
++++. ... .-+.+|-++.|++.+.
T Consensus 86 ~v~ea-~~~----Gi~~vVi~t~G~~~~~ 109 (294)
T 2yv1_A 86 AVFEA-IDA----GIELIVVITEHIPVHD 109 (294)
T ss_dssp HHHHH-HHT----TCSEEEECCSCCCHHH
T ss_pred HHHHH-HHC----CCCEEEEECCCCCHHH
Confidence 88876 331 1234555677888653
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0001 Score=71.00 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=62.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cc--cC-----------------------
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-AL--ND----------------------- 117 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~--~s----------------------- 117 (341)
..+|+|||+|.+|...++.+...|. +|+++||++++++.+.+ +|. .. ..
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga----~V~~~d~~~~~~~~~~~-~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~ 246 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGA----VVMATDVRAATKEQVES-LGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK 246 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCSTTHHHHHH-TTCEECCC-----------------------CC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH-cCCeEEeecccccccccccccchhhcCHHHHhh
Confidence 4689999999999999999998884 79999999888776655 665 22 11
Q ss_pred ----hHHHhhcCCEEEEee--Ch----HHH-HHHHHHhhhcccccCCCcEEEEec
Q psy316 118 ----NHRIIKEAEYVFLAM--KP----QYL-DSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 118 ----~~e~~~~aDvIilaV--~~----~~v-~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
..+.+..+|+||.++ |. ..+ .+.++. + +++.+||++.
T Consensus 247 ~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~-----m--k~g~vivdva 294 (384)
T 1l7d_A 247 QAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTK-----M--KPGSVIIDLA 294 (384)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTT-----S--CTTCEEEETT
T ss_pred hHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhc-----C--CCCCEEEEEe
Confidence 455677899999988 42 112 333333 4 6778888775
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=2.8e-05 Score=71.37 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC----ccccChHHHhh-cCCEEEEeeChHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD----FALNDNHRIIK-EAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g----~~~~s~~e~~~-~aDvIilaV~~~~ 136 (341)
.+++.|+|+|.||.+++..|.+.|. +|++++|++++++.+.++++ +...+.+++.. .+|+||-++|...
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~----~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~ 192 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQ----NIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL 192 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTC----EEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC
Confidence 4689999999999999999999983 99999999998887765332 21122233223 7899999988653
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.54 E-value=8.5e-05 Score=68.01 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=51.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC----ccccChHHHh-hcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD----FALNDNHRII-KEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g----~~~~s~~e~~-~~aDvIilaV~~~ 135 (341)
.+++.|+|+|.||.+++..|.+.|. +|++++|++++++.+.++++ +...+..++. ..+|+||.+++..
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~----~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~ 191 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDC----AVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG 191 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCG
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC----EEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCC
Confidence 4689999999999999999999984 99999999998877765443 1112222322 4788888888754
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00021 Score=66.94 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=65.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh--hhcCcC-CC--c-c---ccChHHHhhcCCEEEEeeC-
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFK--LHWPEP-MD--F-A---LNDNHRIIKEAEYVFLAMK- 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~--~~l~~~-~g--~-~---~~s~~e~~~~aDvIilaV~- 133 (341)
|||+|||+ |.+|..++..|+..|+ .++|.++|+++... ..+... .. + . +++.+++++++|+||++..
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~--~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPL--VSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTT--CSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 58999998 9999999999998874 46899999986221 123221 11 2 2 1356778999999999972
Q ss_pred ---h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 134 ---P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 134 ---~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+ ..++++++.+ ..+. ++..||..++.+..
T Consensus 79 ~~~~g~~r~dl~~~n~~i~~~i~~~i-~~~~---p~a~viv~sNPv~~ 122 (314)
T 1mld_A 79 PRKPGMTRDDLFNTNATIVATLTAAC-AQHC---PDAMICIISNPVNS 122 (314)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHH-HHHC---TTSEEEECSSCHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHH-HhhC---CCeEEEEECCCcch
Confidence 2 2355666666 5543 55566656676553
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.53 E-value=8.1e-05 Score=68.79 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=53.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-------c-cc--cChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-------F-AL--NDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-------~-~~--~s~~e~~~~aDvIilaV~ 133 (341)
.+++.|+|+|.+|.+++..|.+.|. .+|++++|++++++.++++++ + .. .+..+.+.++|+||-|+|
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~G~---~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp 203 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTHGV---QKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC---SEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence 4689999999999999999999984 479999999999887765331 1 11 255666778888888887
Q ss_pred h
Q psy316 134 P 134 (341)
Q Consensus 134 ~ 134 (341)
.
T Consensus 204 ~ 204 (283)
T 3jyo_A 204 M 204 (283)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=72.75 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----ccc---ChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALN---DNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~---s~~e~~~~aDvIilaV~~~ 135 (341)
.++|.|||+|.+|.+++..|.+.+- .+|++++|++++++.+.++.++ ... +..++++.+|+||.|+|+.
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g---~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~ 99 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDD---INVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT 99 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTT---EEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred CCEEEEECChHHHHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence 3689999999999999999998831 4899999999988877543232 111 3345677899999999976
Q ss_pred HHHHHH
Q psy316 136 YLDSAI 141 (341)
Q Consensus 136 ~v~~vl 141 (341)
....+.
T Consensus 100 ~~~~v~ 105 (467)
T 2axq_A 100 FHPNVV 105 (467)
T ss_dssp GHHHHH
T ss_pred hhHHHH
Confidence 433443
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0002 Score=64.98 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
--|||++||+|+||+.+++. . ++ .-+.+|+ ++... +|+ .+.|.++++.++|+|+.|-.++++.+.+
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~l---eLv~v~~---~k~ge----lgv~a~~d~d~lla~pD~VVe~A~~~av~e~~ 77 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NF---EKIYAYD---RISKD----IPGVVRLDEFQVPSDVSTVVECASPEAVKEYS 77 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CC---SEEEEEC---SSCCC----CSSSEECSSCCCCTTCCEEEECSCHHHHHHHH
T ss_pred ccceEEEECcCHHHHHHHhc--C-Cc---EEEEEEe---ccccc----cCceeeCCHHHHhhCCCEEEECCCHHHHHHHH
Confidence 34799999999999999997 3 54 3456787 34332 366 6777888878999999999999888866
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
..+ | ..|.-+|+++.|
T Consensus 78 ~~i----L--~aG~dvv~~S~g 93 (253)
T 1j5p_A 78 LQI----L--KNPVNYIIISTS 93 (253)
T ss_dssp HHH----T--TSSSEEEECCGG
T ss_pred HHH----H--HCCCCEEEcChh
Confidence 555 5 566655555443
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00015 Score=68.98 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=58.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh----hhhcCcCC-------C---ccc--cChHHHhh-c
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERF----KLHWPEPM-------D---FAL--NDNHRIIK-E 124 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~----~~~l~~~~-------g---~~~--~s~~e~~~-~ 124 (341)
|++||+|+| .|.+|..+++.|.++. ..+|....+++.. +......+ + +.. .+..+..+ .
T Consensus 7 M~~kV~IiGAtG~iG~~llr~L~~~p---~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
T 1ys4_A 7 MKIKVGVLGATGSVGQRFVQLLADHP---MFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFED 83 (354)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCS---SEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTT
T ss_pred ccceEEEECcCCHHHHHHHHHHhcCC---CCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCC
Confidence 667999999 7999999999887654 2467655432211 11110000 0 111 14445446 8
Q ss_pred CCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCC
Q psy316 125 AEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 125 aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
+|+||+|+|.....+....+ + ..+..||+..+.
T Consensus 84 ~DvV~~atp~~~~~~~a~~~----~--~aG~~VId~s~~ 116 (354)
T 1ys4_A 84 VDIVFSALPSDLAKKFEPEF----A--KEGKLIFSNASA 116 (354)
T ss_dssp CCEEEECCCHHHHHHHHHHH----H--HTTCEEEECCST
T ss_pred CCEEEECCCchHHHHHHHHH----H--HCCCEEEECCch
Confidence 99999999998877777665 3 456678887653
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=7.7e-05 Score=65.99 Aligned_cols=78 Identities=10% Similarity=-0.091 Sum_probs=56.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh-cCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK-EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~-~aDvIilaV~~~~v~~v 140 (341)
.++++|||+|++|..+++.+... |+ .-+.++|.++++.......+++ ...+..+.++ +.|+|++|+|.....++
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~g~---~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~~~ei 156 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGESF---ELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKA 156 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSE---EEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHHHHHHH
T ss_pred CCEEEEECccHHHHHHHHhHhhcCCc---EEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCchhHHHH
Confidence 46899999999999999853221 32 2355889998887655443344 4566777765 58999999998877777
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
...+
T Consensus 157 ~~~l 160 (211)
T 2dt5_A 157 ADLL 160 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0002 Score=67.87 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=50.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc------------------cccChHHHhhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF------------------ALNDNHRIIKEA 125 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~------------------~~~s~~e~~~~a 125 (341)
+||||+|+|.||+.+++.|.++.. -+| .+.+++++....+..+.|+ ...+.+++..++
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~---~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~v 78 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPD---MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTS 78 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTT---EEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred eEEEEEecCHHHHHHHHHHHcCCC---CEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCC
Confidence 589999999999999999886542 244 5778876554333222232 122334555689
Q ss_pred CEEEEeeChHHHHHHHHH
Q psy316 126 EYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 126 DvIilaV~~~~v~~vl~~ 143 (341)
|+||.|+|+....+....
T Consensus 79 DvV~~aTp~~~s~~~a~~ 96 (340)
T 1b7g_O 79 DIVVDTTPNGVGAQYKPI 96 (340)
T ss_dssp SEEEECCSTTHHHHHHHH
T ss_pred CEEEECCCCchhHHHHHH
Confidence 999999998765555543
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00021 Score=70.28 Aligned_cols=68 Identities=10% Similarity=0.186 Sum_probs=53.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c-----ccc---ChHHHhhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F-----ALN---DNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~-----~~~---s~~e~~~~aDvIilaV~~~ 135 (341)
++|.|+|+|.+|.+++..|.+.|. +|++++|++++++.+.++++ + ... +..++++++|+||.|+++.
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~G~----~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDSGI----KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTC----EEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CEEEEECCCHHHHHHHHHHHhCcC----EEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 579999999999999999998884 89999999999888876553 2 122 2335677899999999875
Q ss_pred H
Q psy316 136 Y 136 (341)
Q Consensus 136 ~ 136 (341)
.
T Consensus 80 ~ 80 (450)
T 1ff9_A 80 F 80 (450)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00011 Score=72.01 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=55.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCC-C----------------------c-cccCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPM-D----------------------F-ALNDN 118 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~-g----------------------~-~~~s~ 118 (341)
+.||||||+|.||+.++..+.+. +..+ +.+++|++++++.+.+++ | . .++|.
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~---~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ 99 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARM---QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDN 99 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTS---SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCH
T ss_pred ceEEEEECChHHHHHHHHHHhhC---CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCH
Confidence 46899999999999999887653 2234 458999999887654322 3 3 56788
Q ss_pred HHHhh--cCCEEEEeeCh-HH-HHHHHHHh
Q psy316 119 HRIIK--EAEYVFLAMKP-QY-LDSAIQGL 144 (341)
Q Consensus 119 ~e~~~--~aDvIilaV~~-~~-v~~vl~~i 144 (341)
++++. +.|+|++|+|+ .. .+-++..+
T Consensus 100 eeLL~d~dIDaVviaTp~p~~H~e~a~~AL 129 (446)
T 3upl_A 100 DLILSNPLIDVIIDATGIPEVGAETGIAAI 129 (446)
T ss_dssp HHHHTCTTCCEEEECSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcCCChHHHHHHHHHHH
Confidence 88887 58999999974 43 33343444
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.44 E-value=9e-05 Score=73.14 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=54.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC---h---HHH-hhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND---N---HRI-IKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s---~---~e~-~~~aDvIilaV~~ 134 (341)
.|||-|+|+|.+|..+|+.|.+.| ++|++.++++++++.+.+++++ ...+ + .++ +++||+++.++..
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~----~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~ 78 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGEN----NDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT 78 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTT----EEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC----CCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence 378999999999999999998888 5999999999999988776665 2222 2 222 5689998888876
Q ss_pred HHH
Q psy316 135 QYL 137 (341)
Q Consensus 135 ~~v 137 (341)
+..
T Consensus 79 De~ 81 (461)
T 4g65_A 79 DET 81 (461)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00041 Score=64.13 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=51.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCccccChHHHhh--cCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDFALNDNHRIIK--EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~~~~s~~e~~~--~aDvIilaV~~~~v~~v 140 (341)
++||||||+|.||...++.|.+....+..++ .+++|++ +.+++|+...+.+++++ +.|+|++|+|+....++
T Consensus 7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~-----~a~~~g~~~~~~~ell~~~~vD~V~i~tp~~~H~~~ 81 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-----LGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDY 81 (294)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC-----CCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH-----HHHHcCCCCCCHHHHhcCCCCCEEEEeCCcHhHHHH
Confidence 4699999999999999988865200011244 4788763 23335663368888886 68999999998765555
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
....
T Consensus 82 ~~~a 85 (294)
T 1lc0_A 82 IRQF 85 (294)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00018 Score=69.80 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=56.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC------c-----c---ccChHHHhhc--CCEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD------F-----A---LNDNHRIIKE--AEYV 128 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g------~-----~---~~s~~e~~~~--aDvI 128 (341)
+||+|||+|.+|+.+++.|.+.|.+. .+|++++|++++++.+.++++ + - ..+..+++++ +|+|
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~-~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV 80 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVF-SHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV 80 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTC-CEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCc-eEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence 68999999999999999999887210 389999999998877654321 2 1 1233455666 8999
Q ss_pred EEeeChHHHHHHHHH
Q psy316 129 FLAMKPQYLDSAIQG 143 (341)
Q Consensus 129 ilaV~~~~v~~vl~~ 143 (341)
|.++++..-..+++.
T Consensus 81 in~ag~~~~~~v~~a 95 (405)
T 4ina_A 81 LNIALPYQDLTIMEA 95 (405)
T ss_dssp EECSCGGGHHHHHHH
T ss_pred EECCCcccChHHHHH
Confidence 999998655555543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00017 Score=68.73 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=61.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCcc---c----cChHHHhhcCCEEEEeeChHH-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFA---L----NDNHRIIKEAEYVFLAMKPQY- 136 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~---~----~s~~e~~~~aDvIilaV~~~~- 136 (341)
.++.|+|+|.+|.++++.+...|. +|++++|++++++.+.+..+.. . .+..+.+..+|+||-|++...
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga----~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGA----QVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC----EEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 689999999999999999999984 8999999999888775521111 1 123455678999999985322
Q ss_pred ------HHHHHHHhhhcccccCCCcEEEEec
Q psy316 137 ------LDSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 137 ------v~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
.++.+ ..+ +++.+|+++.
T Consensus 244 ~~~~li~~~~~-----~~~--~~g~~ivdv~ 267 (361)
T 1pjc_A 244 RAPILVPASLV-----EQM--RTGSVIVDVA 267 (361)
T ss_dssp SCCCCBCHHHH-----TTS--CTTCEEEETT
T ss_pred CCCeecCHHHH-----hhC--CCCCEEEEEe
Confidence 22333 234 6777888764
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0011 Score=61.54 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=65.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--c-CCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--E-AEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~-aDvIilaV~~~~v~ 138 (341)
+.++.|+|+ |+||+.+++.|.+.|+ + .++..+|.+... +-+|+ .+.+..++.. . +|++++++||..+.
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~----~-~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~ 85 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGT----K-VVAGVTPGKGGS--EVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAP 85 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC----E-EEEEECTTCTTC--EETTEEEESSHHHHHHHCTTCCEEEECCCGGGHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCC----c-EEEEeCCCCCCc--eECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHH
Confidence 456888898 9999999999999885 5 333444443211 11577 7788888876 4 99999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHH
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLE 167 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~ 167 (341)
+++++. ... . =+.+|-++.|++.+
T Consensus 86 ~~v~ea-~~~---G-i~~vVi~t~G~~~~ 109 (297)
T 2yv2_A 86 DAVYEA-VDA---G-IRLVVVITEGIPVH 109 (297)
T ss_dssp HHHHHH-HHT---T-CSEEEECCCCCCHH
T ss_pred HHHHHH-HHC---C-CCEEEEECCCCCHH
Confidence 998876 331 1 23344467788864
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00015 Score=68.00 Aligned_cols=88 Identities=10% Similarity=0.148 Sum_probs=62.5
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc----c-----c--cChHHHhhcCCEEEEe
Q psy316 64 WTKVGFIGAGNM-AQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF----A-----L--NDNHRIIKEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~m-G~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~----~-----~--~s~~e~~~~aDvIila 131 (341)
.+++.|||.|+| |..+++.|...|. +|++++|+..+......+++. . + .+..+.+.++|+||.+
T Consensus 177 gk~vvVIG~G~iVG~~~A~~L~~~gA----tVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsA 252 (320)
T 1edz_A 177 GKKCIVINRSEIVGRPLAALLANDGA----TVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 252 (320)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSC----EEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCEEEEECCCcchHHHHHHHHHHCCC----EEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEEC
Confidence 578999999986 9999999999884 899999985544333332322 1 2 4567889999999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+..... ++. ...+ +++.+||++..
T Consensus 253 tg~p~~--vI~---~e~v--k~GavVIDVgi 276 (320)
T 1edz_A 253 VPSENY--KFP---TEYI--KEGAVCINFAC 276 (320)
T ss_dssp CCCTTC--CBC---TTTS--CTTEEEEECSS
T ss_pred CCCCcc--eeC---HHHc--CCCeEEEEcCC
Confidence 974320 111 2346 77888888844
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00018 Score=63.58 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=53.3
Q ss_pred CCeEEEEcccHHHHHHHHHHH--hcCCCCCCeEEEEcCChh-hhhh-cCcCCCc-cccChHHHhh--cCCEEEEeeChHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLI--RTGLCIPAQIIASAPSER-FKLH-WPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~--~~G~~~~~~V~v~~r~~e-~~~~-l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~ 136 (341)
..+++|||+|++|.++++.+. +.|+ .-+.++|.+++ +... ......+ ...+..+.++ +.|++|+|+|...
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~---~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~~ 160 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKM---QISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTE 160 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSE---EEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGGG
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCe---EEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCchh
Confidence 468999999999999988742 2232 23457899987 6544 2221223 3456677766 5999999999877
Q ss_pred HHHHHHHh
Q psy316 137 LDSAIQGL 144 (341)
Q Consensus 137 v~~vl~~i 144 (341)
..++.+.+
T Consensus 161 aq~v~d~l 168 (212)
T 3keo_A 161 AQEVADIL 168 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777665
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00029 Score=66.28 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=62.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh--hhhcCcC-C--Cc-c---ccChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERF--KLHWPEP-M--DF-A---LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~--~~~l~~~-~--g~-~---~~s~~e~~~~aDvIilaV 132 (341)
++|||+||| +|.+|..++..|+..|. .++|.++|++++. +..+... . .+ . .++..++++++|+||++.
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~--~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~a 84 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPL--VSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 84 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTT--EEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC--CCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcC
Confidence 457999999 79999999999988773 2489999987652 1122221 1 12 2 224567789999999997
Q ss_pred C----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 K----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ~----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
. + ..++++++.+ ..+ .++.+|+-.++++..
T Consensus 85 g~~~~~g~~r~dl~~~N~~~~~~i~~~i-~~~---~p~~~viv~SNPv~~ 130 (326)
T 1smk_A 85 GVPRKPGMTRDDLFKINAGIVKTLCEGI-AKC---CPRAIVNLISNPVNS 130 (326)
T ss_dssp CCCCCSSCCCSHHHHHHHHHHHHHHHHH-HHH---CTTSEEEECCSSHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHH-Hhh---CCCeEEEEECCchHH
Confidence 3 2 2344555555 443 345555545555443
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0018 Score=58.43 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=54.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhc-CCCCCCeEE-EEcCChhhhhhcCcCCCccccChHHHhh-cCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRT-GLCIPAQII-ASAPSERFKLHWPEPMDFALNDNHRIIK-EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~-G~~~~~~V~-v~~r~~e~~~~l~~~~g~~~~s~~e~~~-~aDvIilaV~~~~v~~v 140 (341)
|||+|+|+ |+||+.+++.+.+. + .++. +++++ .+..+++. .+|+||-++.|..+.+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~----~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~a~~~~ 61 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADD----LTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPDVVMGN 61 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTT----CEEEEEECTT---------------CCTHHHHHTTCCEEEECSCTTTHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC----CEEEEEEccC---------------CCHHHHhccCCcEEEEccChHHHHHH
Confidence 58999997 99999999998765 5 3665 66653 12344443 78999988888887777
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHHHH
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLETLK 170 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~l~ 170 (341)
+... . ..+.-+|..+.|.+.++++
T Consensus 62 ~~~a-~-----~~g~~~VigTTG~~~e~~~ 85 (245)
T 1p9l_A 62 LEFL-I-----DNGIHAVVGTTGFTAERFQ 85 (245)
T ss_dssp HHHH-H-----HTTCEEEECCCCCCHHHHH
T ss_pred HHHH-H-----HcCCCEEEcCCCCCHHHHH
Confidence 7554 2 2344344445678876553
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=64.45 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=49.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c---ccChHHHhhcCCEEEEeeC
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A---LNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~s~~e~~~~aDvIilaV~ 133 (341)
+|+|||.|+|+|.+|+.+++.|++.|+ +|++.+|++.+.+.+.. .++ . ..+.. +..+|+||-+..
T Consensus 3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~~~~~-~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 3 AMTGTLLSFGHGYTARVLSRALAPQGW----RIIGTSRNPDQMEAIRA-SGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp --CCEEEEETCCHHHHHHHHHHGGGTC----EEEEEESCGGGHHHHHH-TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred CCcCcEEEECCcHHHHHHHHHHHHCCC----EEEEEEcChhhhhhHhh-CCCeEEEecccccc--cCCCCEEEECCC
Confidence 478999999999999999999999984 99999999887766544 243 1 22222 678999998874
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0011 Score=61.89 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=62.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhc-CCCCCCeEEEEcCChh---hhhhcCcC-CCc-cc----cChHHHhhcCCEEEEee-
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRT-GLCIPAQIIASAPSER---FKLHWPEP-MDF-AL----NDNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e---~~~~l~~~-~g~-~~----~s~~e~~~~aDvIilaV- 132 (341)
|||+||| +|++|.+++..|... ++ ..++.++|+++. .+..+... +.. .. .+..+.+++||+||++.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~--~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag 78 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPS--GSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAG 78 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCT--TEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC--CceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCC
Confidence 6899999 899999999998876 54 368999999861 12222221 122 21 25678899999999987
Q ss_pred ---ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 ---KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 ---~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+|. .++++.+.+ ..+ .++.+++..++.+..
T Consensus 79 ~~rkpG~~R~dll~~N~~I~~~i~~~i-~~~---~p~a~vlvvtNPvd~ 123 (312)
T 3hhp_A 79 VARKPGMDRSDLFNVNAGIVKNLVQQV-AKT---CPKACIGIITNPVNT 123 (312)
T ss_dssp CSCCTTCCHHHHHHHHHHHHHHHHHHH-HHH---CTTSEEEECSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCcEEEEecCcchh
Confidence 231 133444444 443 366677777676553
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00029 Score=66.64 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=50.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC------------------Cc-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM------------------DF-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~------------------g~-~~~s~~e~~~~ 124 (341)
+||||+|+|.+|..+++.|.++.. -++ .+.++++.....+..+. ++ ...+..+++.+
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~---~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 78 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDD---MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE 78 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSS---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred eEEEEEeECHHHHHHHHHHHcCCC---cEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC
Confidence 689999999999999999887531 244 45677654333222111 12 22345666678
Q ss_pred CCEEEEeeChHHHHHHHHHh
Q psy316 125 AEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 125 aDvIilaV~~~~v~~vl~~i 144 (341)
+|+||.|+|.....+.....
T Consensus 79 vDvV~~atp~~~~~~~a~~~ 98 (337)
T 1cf2_P 79 ADIVIDCTPEGIGAKNLKMY 98 (337)
T ss_dssp CSEEEECCSTTHHHHHHHHH
T ss_pred CCEEEECCCchhhHHHHHHH
Confidence 99999999987766655544
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0009 Score=59.19 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=49.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c---ccC---hHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A---LND---NHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~s---~~e~~~~aDvIilaV~~ 134 (341)
+++|.|.| .|.+|.++++.|++.|. ++|++++|++++++.+... ++ . ..+ ..++++.+|+||.+...
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~---~~V~~~~R~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQT---IKQTLFARQPAKIHKPYPT-NSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT---EEEEEEESSGGGSCSSCCT-TEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCC---ceEEEEEcChhhhcccccC-CcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 46788888 59999999999999882 4999999998887765542 33 1 122 34557789999988754
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00062 Score=67.28 Aligned_cols=88 Identities=11% Similarity=0.128 Sum_probs=65.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-HHHH-HH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-YLDS-AI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~v~~-vl 141 (341)
.++++|+|+|.+|.++++.|...|. +|++++|++.+++.... .++...+.++++..+|+++.+.... .+.. .+
T Consensus 265 GKtVvVtGaGgIG~aiA~~Laa~GA----~Viv~D~~~~~a~~Aa~-~g~dv~~lee~~~~aDvVi~atG~~~vl~~e~l 339 (488)
T 3ond_A 265 GKVAVVAGYGDVGKGCAAALKQAGA----RVIVTEIDPICALQATM-EGLQVLTLEDVVSEADIFVTTTGNKDIIMLDHM 339 (488)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTCEECCGGGTTTTCSEEEECSSCSCSBCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHH-hCCccCCHHHHHHhcCEEEeCCCChhhhhHHHH
Confidence 4789999999999999999999995 99999999988766555 3553446678888999999887532 2222 23
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
. .+ +++.+|+....+
T Consensus 340 ~-----~m--k~gaiVvNaG~~ 354 (488)
T 3ond_A 340 K-----KM--KNNAIVCNIGHF 354 (488)
T ss_dssp T-----TS--CTTEEEEESSST
T ss_pred H-----hc--CCCeEEEEcCCC
Confidence 2 34 677788776443
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00063 Score=64.41 Aligned_cols=93 Identities=11% Similarity=0.144 Sum_probs=56.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEE-cCC-hhhhhhcCcCCCcccc--ChHHHhhcCCEEEEeeChHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIAS-APS-ERFKLHWPEPMDFALN--DNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~-~r~-~e~~~~l~~~~g~~~~--s~~e~~~~aDvIilaV~~~~v 137 (341)
|+|||+|+| .|.+|..+.+.|.+.++ +..++... +++ ..+.-.+.. ..+... +. +.+..+|+||+|++...-
T Consensus 5 m~~kV~IiGAtG~iG~~llr~L~~~~~-~~~elv~i~s~~~~g~~~~~~g-~~i~~~~~~~-~~~~~~DvV~~a~g~~~s 81 (340)
T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDERDF-PLHRLHLLASAESAGQRMGFAE-SSLRVGDVDS-FDFSSVGLAFFAAAAEVS 81 (340)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTC-CCSCEEEEECTTTTTCEEEETT-EEEECEEGGG-CCGGGCSEEEECSCHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEEecCCCCCCccccCC-cceEEecCCH-HHhcCCCEEEEcCCcHHH
Confidence 567999999 79999999999986654 33455544 432 211111111 011111 22 235689999999998876
Q ss_pred HHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
.+....+ + ..+..+|++++..
T Consensus 82 ~~~a~~~----~--~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 82 RAHAERA----R--AAGCSVIDLSGAL 102 (340)
T ss_dssp HHHHHHH----H--HTTCEEEETTCTT
T ss_pred HHHHHHH----H--HCCCEEEEeCCCC
Confidence 6766554 3 3455677765543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=62.85 Aligned_cols=101 Identities=6% Similarity=0.056 Sum_probs=64.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC----C---ccccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM----D---FALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~----g---~~~~s~~e~~~~aDvIilaV~~~ 135 (341)
++||+|+| .|.+|..+.+.|.++. ..++....+....-.++.+.+ | +...+..+ +..+|+||+|++..
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p---~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~ 79 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHP---YLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHG 79 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCT---TEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCC---CcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcH
Confidence 47999999 6999999999998764 236665544322222222111 1 11222333 47899999999988
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
...+....+ + ..|..||++++..- .+..++|++
T Consensus 80 ~s~~~a~~~----~--~aG~~VId~Sa~~r~~~~~~y~~~y~ 115 (345)
T 2ozp_A 80 VFAREFDRY----S--ALAPVLVDLSADFRLKDPELYRRYYG 115 (345)
T ss_dssp HHHHTHHHH----H--TTCSEEEECSSTTSCSCHHHHHHHHC
T ss_pred HHHHHHHHH----H--HCCCEEEEcCccccCCChHHHHhhhc
Confidence 776666554 3 46777898876542 455666665
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00082 Score=62.49 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=61.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcC--ChhhhhhcCcC--------CCc-cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAP--SERFKLHWPEP--------MDF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r--~~e~~~~l~~~--------~g~-~~~s~~e~~~~aDvIilaV 132 (341)
|||+||| +|.+|++++..|+..++ ..++.++|+ ++++++....+ ..+ ...+..++++++|+||++.
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~--~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~a 78 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDI--ADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITA 78 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--CSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcC
Confidence 6899999 99999999999988875 247999999 77654321110 112 1113366789999999987
Q ss_pred C----h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 K----P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ~----~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
. + ..++++++.+ ..+ .++.+|+..++.+.
T Consensus 79 g~~~~~g~~r~dl~~~N~~i~~~i~~~i-~~~---~p~~~viv~SNPv~ 123 (303)
T 1o6z_A 79 GIPRQPGQTRIDLAGDNAPIMEDIQSSL-DEH---NDDYISLTTSNPVD 123 (303)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHH-HTT---CSCCEEEECCSSHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHH---CCCcEEEEeCChHH
Confidence 3 2 1244455555 443 35556665556554
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00092 Score=64.08 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC----hhhh----hh----cCcCCCc--cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS----ERFK----LH----WPEPMDF--ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~----~e~~----~~----l~~~~g~--~~~s~~e~~~~aDvIi 129 (341)
..||.|+|+|.+|..+++.|...|. .+|+++||+ .++. .. +.++.+. ...++.++++.+|++|
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~---~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI 268 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGV---KNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 268 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC---CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCC---CeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE
Confidence 3689999999999999999999994 589999998 5552 22 2222221 3457899999999999
Q ss_pred EeeChHH-HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 130 LAMKPQY-LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 130 laV~~~~-v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
=+..|.. -+++++.+ .++.+|+.+++..+
T Consensus 269 G~Sap~l~t~emVk~M-------a~~pIIfalSNPt~ 298 (388)
T 1vl6_A 269 GVSRGNILKPEWIKKM-------SRKPVIFALANPVP 298 (388)
T ss_dssp ECSCSSCSCHHHHTTS-------CSSCEEEECCSSSC
T ss_pred EeCCCCccCHHHHHhc-------CCCCEEEEcCCCCC
Confidence 7775543 34555555 45669999888754
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00049 Score=64.39 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=50.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC---hhhhhhcCcCC----Cc-----cccCh---HHHhhcCCEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS---ERFKLHWPEPM----DF-----ALNDN---HRIIKEAEYV 128 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~---~e~~~~l~~~~----g~-----~~~s~---~e~~~~aDvI 128 (341)
.+++.|+|+|.+|.+++..|.+.|. .+|++++|+ .++++.+.+++ +. ...+. .+.+.++|+|
T Consensus 148 gk~~lVlGAGGaaraia~~L~~~G~---~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI 224 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAIEGI---KEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL 224 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCC---CEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence 4689999999999999999999984 589999999 77777765432 21 11222 3445677777
Q ss_pred EEeeCh
Q psy316 129 FLAMKP 134 (341)
Q Consensus 129 ilaV~~ 134 (341)
|-|+|.
T Consensus 225 INaTp~ 230 (312)
T 3t4e_A 225 TNGTKV 230 (312)
T ss_dssp EECSST
T ss_pred EECCcC
Confidence 777764
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=63.98 Aligned_cols=86 Identities=13% Similarity=0.210 Sum_probs=58.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhc--------CCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT--------GLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~--------G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV 132 (341)
.||||||+|++|+.+++.|.++ |. ..+ +.+++|++++.+.+.. +. .+.+..+++. +.|+|+.|+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~--~i~lvaV~d~~~~~~~~~~~--~~~~~~d~~ell~d~diDvVve~t 86 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGR--EIRVVRAAVRNLDKAEALAG--GLPLTTNPFDVVDDPEIDIVVELI 86 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSS--CEEEEEEECSCHHHHHHHHT--TCCEESCTHHHHTCTTCCEEEECC
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCC--CEEEEEEEECCHHHhhhhcc--cCcccCCHHHHhcCCCCCEEEEcC
Confidence 5899999999999999877642 21 123 4589999988776532 34 6678888886 579999999
Q ss_pred Ch-HHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 133 KP-QYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 133 ~~-~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
|+ ....+.+... + ..|+-|++-
T Consensus 87 p~~~~h~~~~~~A----L--~aGKhVvte 109 (444)
T 3mtj_A 87 GGLEPARELVMQA----I--ANGKHVVTA 109 (444)
T ss_dssp CSSTTHHHHHHHH----H--HTTCEEEEC
T ss_pred CCchHHHHHHHHH----H--HcCCEEEEC
Confidence 85 5444544332 3 345555543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0026 Score=54.90 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=49.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccC----hHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALND----NHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s----~~e~~~~aDvIilaV~ 133 (341)
|||.|+|+ |.+|+.+++.|++.|+ +|++.+|++++++.+.........| ..+.+..+|+||.+..
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~----~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag 70 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH----EVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYG 70 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC----EEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCc
Confidence 58999995 9999999999999994 9999999998877664211111111 1256788999998874
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0013 Score=62.09 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=64.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEE-cCCh--h---hhhh----cCcCCCcccc---ChHHHhhcCCEE
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIAS-APSE--R---FKLH----WPEPMDFALN---DNHRIIKEAEYV 128 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~-~r~~--e---~~~~----l~~~~g~~~~---s~~e~~~~aDvI 128 (341)
| +||+|+|+ |.+|..+.+.|.++- ..++... .++. . ++.. +.......+. +..+.+.++|+|
T Consensus 4 M-~kv~IvGatG~vG~~l~~~L~~~p---~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvv 79 (337)
T 3dr3_A 4 M-LNTLIVGASGYAGAELVTYVNRHP---HMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVV 79 (337)
T ss_dssp C-EEEEEETTTSHHHHHHHHHHHHCT---TEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEE
T ss_pred c-eEEEEECCCChHHHHHHHHHHhCC---CCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEE
Confidence 5 79999995 999999999888753 2466543 3320 1 1111 2221122111 344444899999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCC---CHHHHHHhcc
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGV---DLETLKKKLS 174 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi---~~~~l~~~l~ 174 (341)
|+|+|...-.+....+ + ..+..||++++.. +.+.-.+|.+
T Consensus 80 f~a~p~~~s~~~~~~~----~--~~g~~vIDlSa~fR~~d~~v~~~wy~ 122 (337)
T 3dr3_A 80 FLATAHEVSHDLAPQF----L--EAGCVVFDLSGAFRVNDATFYEKYYG 122 (337)
T ss_dssp EECSCHHHHHHHHHHH----H--HTTCEEEECSSTTSSSCHHHHHHHTS
T ss_pred EECCChHHHHHHHHHH----H--HCCCEEEEcCCccccCCcccchhhcc
Confidence 9999998877777665 3 4677899987764 3445556655
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00077 Score=63.40 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=64.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCC---CCCeEEEEcCC----hhhhhh----cCcC---C--Cc-cccChHHHhhcC
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLC---IPAQIIASAPS----ERFKLH----WPEP---M--DF-ALNDNHRIIKEA 125 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~---~~~~V~v~~r~----~e~~~~----l~~~---~--g~-~~~s~~e~~~~a 125 (341)
+|||+|||+ |.+|+.++..|+..|++ ...+|.++|++ +++++. +... + .+ ...+..++++++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a 84 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence 479999998 99999999999987742 22479999998 544432 2221 1 12 345678889999
Q ss_pred CEEEEeeC----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 126 EYVFLAMK----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 126 DvIilaV~----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
|+||++.. +. .++++++.+ ..+- .++..||..++.+.
T Consensus 85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i-~~~~--~p~a~ii~~SNPv~ 137 (329)
T 1b8p_A 85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAI-DAVA--SRNIKVLVVGNPAN 137 (329)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHS--CTTCEEEECSSSHH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhc--CCCeEEEEccCchH
Confidence 99998852 21 133444555 4432 25657776666543
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0019 Score=63.84 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=47.6
Q ss_pred CeEEEEcccHHHHH--HHHHHHhcCCCC--CCeEEEEcCChhhhhhcC-------cCCC----c-cccChHHHhhcCCEE
Q psy316 65 TKVGFIGAGNMAQA--VATSLIRTGLCI--PAQIIASAPSERFKLHWP-------EPMD----F-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~G~mG~a--ia~~L~~~G~~~--~~~V~v~~r~~e~~~~l~-------~~~g----~-~~~s~~e~~~~aDvI 128 (341)
|||+|||+|..|.. +...++....++ ..+|.++|.++++++... +..| + .++|..+++++||+|
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V 80 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI 80 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence 68999999998744 445555433222 357999999998876421 1112 2 467888999999999
Q ss_pred EEee
Q psy316 129 FLAM 132 (341)
Q Consensus 129 ilaV 132 (341)
|+++
T Consensus 81 i~~~ 84 (477)
T 3u95_A 81 INTA 84 (477)
T ss_dssp EECC
T ss_pred EECc
Confidence 9986
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00055 Score=64.62 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=51.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC-CC----CCeE-EEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChH-H
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGL-CI----PAQI-IASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQ-Y 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~-~~----~~~V-~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~-~ 136 (341)
++||||||+|+||+.+++.|.+... +. ..+| .+++|++++.+.+.. ...++|.++++ +.|+|+.|++.. .
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~--~~~~~d~~~ll-~iDvVve~t~~~~~ 79 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQ--ELLRAEPFDLL-EADLVVEAMGGVEA 79 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCG--GGEESSCCCCT-TCSEEEECCCCSHH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCc--ccccCCHHHHh-CCCEEEECCCCcHH
Confidence 3689999999999999999877530 00 1133 588998765443311 11455667777 899999999865 3
Q ss_pred HHHHHH
Q psy316 137 LDSAIQ 142 (341)
Q Consensus 137 v~~vl~ 142 (341)
..+.+.
T Consensus 80 a~~~~~ 85 (332)
T 2ejw_A 80 PLRLVL 85 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344543
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00055 Score=64.50 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=47.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhc-------CCCCCCe-EEEEcCChhhhhh------cCcCCC-c-ccc--ChHHHhh--c
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT-------GLCIPAQ-IIASAPSERFKLH------WPEPMD-F-ALN--DNHRIIK--E 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~-------G~~~~~~-V~v~~r~~e~~~~------l~~~~g-~-~~~--s~~e~~~--~ 124 (341)
+||+|||+|+||+.+++.|.+. |. ..+ +.+++|++++.+. +...++ . ... |..++++ +
T Consensus 3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~--~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~ 80 (327)
T 3do5_A 3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIG--EFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSAD 80 (327)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTHHHHHHHHC--CEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSC
T ss_pred EEEEEEeccHHHHHHHHHHHhhHHHHHhcCC--CEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCC
Confidence 6999999999999999999875 11 124 4578888665432 111111 1 333 7888876 5
Q ss_pred CCEEEEeeChHH
Q psy316 125 AEYVFLAMKPQY 136 (341)
Q Consensus 125 aDvIilaV~~~~ 136 (341)
.|+|+.|+|+..
T Consensus 81 iDvVv~~tp~~~ 92 (327)
T 3do5_A 81 YDVLIEASVTRV 92 (327)
T ss_dssp CSEEEECCCCC-
T ss_pred CCEEEECCCCcc
Confidence 899999999763
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0018 Score=58.41 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..+|.|||+|.+|+.+++.|...|. .+|+++|++.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv---~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGV---GNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC---SEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCC---CeEEEEcCCC
Confidence 4689999999999999999999995 6899999986
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00077 Score=54.29 Aligned_cols=94 Identities=23% Similarity=0.207 Sum_probs=68.3
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
+++|+|||+ |..|..+.++|.+.|+ +|+-.++..+. + .|. ...+..++-. .|++++++|++.+.
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~----~V~pVnP~~~~---i---~G~~~y~sl~dlp~-vDlavi~~p~~~v~ 72 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGH----EFIPVGRKKGE---V---LGKTIINERPVIEG-VDTVTLYINPQNQL 72 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTC----CEEEESSSCSE---E---TTEECBCSCCCCTT-CCEEEECSCHHHHG
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCC----eEEEECCCCCc---C---CCeeccCChHHCCC-CCEEEEEeCHHHHH
Confidence 357999998 6799999999999995 88888764322 2 355 5566666656 99999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
++++++ ... ....++ +..|...+++.+...
T Consensus 73 ~~v~e~-~~~---g~k~v~--~~~G~~~~e~~~~a~ 102 (122)
T 3ff4_A 73 SEYNYI-LSL---KPKRVI--FNPGTENEELEEILS 102 (122)
T ss_dssp GGHHHH-HHH---CCSEEE--ECTTCCCHHHHHHHH
T ss_pred HHHHHH-Hhc---CCCEEE--ECCCCChHHHHHHHH
Confidence 999887 432 233343 567776666655554
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0007 Score=63.97 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=49.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcC--ChhhhhhcCc------CCC----------------c-cc-
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAP--SERFKLHWPE------PMD----------------F-AL- 115 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r--~~e~~~~l~~------~~g----------------~-~~- 115 (341)
|++||||+|+|++|..+++.|.++.. -+| .+.++ +++.+..+.+ ++. + ..
T Consensus 2 M~ikVgI~G~G~iGr~~~R~l~~~~~---vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~ 78 (335)
T 1u8f_O 2 GKVKVGVNGFGRIGRLVTRAAFNSGK---VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQ 78 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCS---SEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEEC
T ss_pred CceEEEEEccCHHHHHHHHHHHcCCC---cEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEe
Confidence 45699999999999999999887532 354 46664 5665433221 110 0 01
Q ss_pred -cChHHH-h--hcCCEEEEeeChHHHHHHHHHh
Q psy316 116 -NDNHRI-I--KEAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 116 -~s~~e~-~--~~aDvIilaV~~~~v~~vl~~i 144 (341)
.+++++ . ..+|+||+|+|...-.+.....
T Consensus 79 ~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~ 111 (335)
T 1u8f_O 79 ERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAH 111 (335)
T ss_dssp CSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGG
T ss_pred cCCHHHCccccCCCCEEEECCCchhhHHHHHHH
Confidence 244444 2 4789999999987666655443
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.001 Score=62.37 Aligned_cols=68 Identities=21% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC---hhhhhhcCcCC----Cc-----cccC---hHHHhhcCCEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS---ERFKLHWPEPM----DF-----ALND---NHRIIKEAEYV 128 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~---~e~~~~l~~~~----g~-----~~~s---~~e~~~~aDvI 128 (341)
.+++.|+|+|.+|.+++..|.+.|. .+|++++|+ .++++.+.+++ ++ ...+ ..+.+.++|+|
T Consensus 154 gk~~lVlGaGG~g~aia~~L~~~Ga---~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI 230 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAALDGV---KEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF 230 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTC---SEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred CCEEEEECCChHHHHHHHHHHHCCC---CEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence 4689999999999999999999984 589999999 88877765432 21 1112 23445677877
Q ss_pred EEeeCh
Q psy316 129 FLAMKP 134 (341)
Q Consensus 129 ilaV~~ 134 (341)
|-|+|.
T Consensus 231 INaTp~ 236 (315)
T 3tnl_A 231 TNATGV 236 (315)
T ss_dssp EECSST
T ss_pred EECccC
Confidence 777764
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0014 Score=62.59 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=57.5
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEc-C-ChhhhhhcCcCCCccccC-hHHHhhcCCEEEEeeChHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASA-P-SERFKLHWPEPMDFALND-NHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~-r-~~e~~~~l~~~~g~~~~s-~~e~~~~aDvIilaV~~~~v~ 138 (341)
|++||+||| .|..|.-|.+.|.++++ +..++.... + +..+.-.+... ...+.+ ..+.+.++|+||+|+|...-.
T Consensus 1 m~~kVaIvGATG~vG~eLlrlL~~~~~-p~~el~~~as~~saG~~~~~~~~-~~~~~~~~~~~~~~~Dvvf~a~~~~~s~ 78 (366)
T 3pwk_A 1 MGYTVAVVGATGAVGAQMIKMLEESTL-PIDKIRYLASARSAGKSLKFKDQ-DITIEETTETAFEGVDIALFSAGSSTSA 78 (366)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCCC-CEEEEEEEECTTTTTCEEEETTE-EEEEEECCTTTTTTCSEEEECSCHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHhcCCC-CcEEEEEEEccccCCCcceecCC-CceEeeCCHHHhcCCCEEEECCChHhHH
Confidence 678999999 59999999998888763 333444433 2 22211111110 111111 123357899999999988777
Q ss_pred HHHHHhhhcccccCCCcEEEEecCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
+....+ + ..+..||++++.
T Consensus 79 ~~a~~~----~--~~G~~vIDlSa~ 97 (366)
T 3pwk_A 79 KYAPYA----V--KAGVVVVDNTSY 97 (366)
T ss_dssp HHHHHH----H--HTTCEEEECSST
T ss_pred HHHHHH----H--HCCCEEEEcCCc
Confidence 777655 3 457788988664
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0038 Score=60.67 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCeEEEEcccHH-HHHHHHHHHh--cCCCCCCeEEEEcCChhhhhhcC-------cCC-Cc-cccChHHHhhcCCEEEEe
Q psy316 64 WTKVGFIGAGNM-AQAVATSLIR--TGLCIPAQIIASAPSERFKLHWP-------EPM-DF-ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~m-G~aia~~L~~--~G~~~~~~V~v~~r~~e~~~~l~-------~~~-g~-~~~s~~e~~~~aDvIila 131 (341)
++||+|||+|.. +..++..|+. .+ ++..+|.++|.++++++... ... .+ .+.|..+++++||+||++
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~-l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viit 80 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISED-VRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQ 80 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTT-SCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccC-CCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEc
Confidence 369999999984 2333344565 44 23468999999998755311 111 12 345667889999999999
Q ss_pred e
Q psy316 132 M 132 (341)
Q Consensus 132 V 132 (341)
.
T Consensus 81 a 81 (417)
T 1up7_A 81 F 81 (417)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0018 Score=61.37 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=53.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCC--------------------Cc-cccChHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPM--------------------DF-ALNDNHR 120 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~--------------------g~-~~~s~~e 120 (341)
|++||||+|+|++|+.+++.|.++.. -+|. +.+++++....+.+.. ++ +..+..+
T Consensus 1 MmikVgI~G~G~IGr~v~r~l~~~~~---~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~ 77 (343)
T 2yyy_A 1 MPAKVLINGYGSIGKRVADAVSMQDD---MEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILD 77 (343)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHSSS---EEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEECCCHHHHHHHHHHHhCCC---ceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHH
Confidence 55799999999999999999987631 2443 5555544433221100 12 2223444
Q ss_pred HhhcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEE
Q psy316 121 IIKEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIIS 159 (341)
Q Consensus 121 ~~~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs 159 (341)
+..++|+||.|++.....+...+ .++ +.|+.||+
T Consensus 78 ~~~~vDiV~eatg~~~s~~~a~~---~~l--~aG~~VI~ 111 (343)
T 2yyy_A 78 IIEDADIVVDGAPKKIGKQNLEN---IYK--PHKVKAIL 111 (343)
T ss_dssp TGGGCSEEEECCCTTHHHHHHHH---TTT--TTTCEEEE
T ss_pred hccCCCEEEECCCccccHHHHHH---HHH--HCCCEEEE
Confidence 55689999999988764444431 234 45555553
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0036 Score=54.46 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=49.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccC---hHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALND---NHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s---~~e~~~~aDvIilaV~~ 134 (341)
+|||.|.|+ |.+|+.+++.|++.|+ +|++.+|++++.+.+...... -..+ ..++++.+|+||-+..+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGF----EVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTC----EEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC----EEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 478999985 9999999999999984 999999998877655331111 1122 34567789999988743
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0035 Score=54.56 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=49.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHH-hcCCCCCCeEEEEcCChh-hhhhcC-cCCCc--c---ccC---hHHHhhcCCEEEE
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLI-RTGLCIPAQIIASAPSER-FKLHWP-EPMDF--A---LND---NHRIIKEAEYVFL 130 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~-~~G~~~~~~V~v~~r~~e-~~~~l~-~~~g~--~---~~s---~~e~~~~aDvIil 130 (341)
|+++|.|+| .|.+|.++++.|+ +.|+ +|++.+|+++ +++.+. ...++ . ..+ ..++++.+|+||.
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDM----HITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCC----EEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCc----eEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 444599998 4999999999999 8884 9999999998 777652 11122 1 122 3456778999998
Q ss_pred eeCh
Q psy316 131 AMKP 134 (341)
Q Consensus 131 aV~~ 134 (341)
+...
T Consensus 80 ~ag~ 83 (221)
T 3r6d_A 80 GAME 83 (221)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8854
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.002 Score=60.63 Aligned_cols=90 Identities=6% Similarity=0.019 Sum_probs=56.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcC---CCC-CCeE-EEEcCChhhhhh-cC-----c---CCCc--ccc---ChHHHhh-c
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTG---LCI-PAQI-IASAPSERFKLH-WP-----E---PMDF--ALN---DNHRIIK-E 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G---~~~-~~~V-~v~~r~~e~~~~-l~-----~---~~g~--~~~---s~~e~~~-~ 124 (341)
+||||||+|+||+.+++.|.+.. ... ..+| .+++|++++++. +. + ..++ .+. |.++++. +
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 68999999999999999987642 000 1143 588998776554 21 1 1133 233 6777763 5
Q ss_pred CCEEEEeeChH----HHHHHHHHhhhcccccCCCcEEEEe
Q psy316 125 AEYVFLAMKPQ----YLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 125 aDvIilaV~~~----~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.|+|+.|+|+. ...+.+... + ..++-||+.
T Consensus 87 iDvVv~~t~~~~~~~~~~~~~~~A----L--~aGkhVvta 120 (331)
T 3c8m_A 87 FDIVVDATPASADGKKELAFYKET----F--ENGKDVVTA 120 (331)
T ss_dssp CSEEEECSCCCSSSHHHHHHHHHH----H--HTTCEEEEC
T ss_pred CCEEEECCCCCCccchHHHHHHHH----H--HCCCeEEec
Confidence 89999999984 334444332 3 455556643
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0018 Score=61.11 Aligned_cols=92 Identities=9% Similarity=0.052 Sum_probs=57.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEc-C-ChhhhhhcCcCCCccccCh-HHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASA-P-SERFKLHWPEPMDFALNDN-HRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~-r-~~e~~~~l~~~~g~~~~s~-~e~~~~aDvIilaV~~~~v~~ 139 (341)
++||+|+| .|.+|..+.+.|.++++ +..++...+ + +..+.-.+... .+...+. .+.+..+|+||+|++...-.+
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~-p~~elv~i~s~~~~G~~~~~~~~-~i~~~~~~~~~~~~vDvVf~a~g~~~s~~ 80 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREF-PVDELFLLASERSEGKTYRFNGK-TVRVQNVEEFDWSQVHIALFSAGGELSAK 80 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEEEECTTTTTCEEEETTE-EEEEEEGGGCCGGGCSEEEECSCHHHHHH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEEECCCCCCCceeecCc-eeEEecCChHHhcCCCEEEECCCchHHHH
Confidence 47999999 89999999999988752 334565444 2 22111112110 1211111 123468999999999887666
Q ss_pred HHHHhhhcccccCCCcEEEEecCC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
....+ + ..+..+|+..+.
T Consensus 81 ~a~~~----~--~~G~~vId~s~~ 98 (336)
T 2r00_A 81 WAPIA----A--EAGVVVIDNTSH 98 (336)
T ss_dssp HHHHH----H--HTTCEEEECSST
T ss_pred HHHHH----H--HcCCEEEEcCCc
Confidence 66554 3 456788887654
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.002 Score=61.38 Aligned_cols=99 Identities=10% Similarity=0.160 Sum_probs=62.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------CccccChHHHhhcCCEEEEeeCh
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------DFALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g~~~~s~~e~~~~aDvIilaV~~ 134 (341)
+||+|+| .|.+|..+++.|.++. ..++....+....-.++.+.+ .+...+ ++.++.+|+||+|+|.
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p---~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~ 92 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHP---HFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPH 92 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCS---SEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCT
T ss_pred cEEEEECcCCHHHHHHHHHHHcCC---CcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCc
Confidence 6999999 7999999999998764 236665544322211111101 111222 3445689999999998
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
..-.+..... ..+..||+..+..- .+..++|++
T Consensus 93 ~~s~~~a~~~-------~aG~~VId~sa~~R~~~~~~y~~~y~ 128 (359)
T 1xyg_A 93 GTTQEIIKEL-------PTALKIVDLSADFRLRNIAEYEEWYG 128 (359)
T ss_dssp TTHHHHHHTS-------CTTCEEEECSSTTTCSCHHHHHHHHS
T ss_pred hhHHHHHHHH-------hCCCEEEECCccccCCchhhhhhhhc
Confidence 7665554432 35678898876542 456777776
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0019 Score=61.49 Aligned_cols=87 Identities=7% Similarity=0.083 Sum_probs=59.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhh-cCCEEEEeeChHHHH-HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK-EAEYVFLAMKPQYLD-SAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~-~aDvIilaV~~~~v~-~vl 141 (341)
.++++|+|+|++|...++.|...|. +|+++|+++++ ..+.++++....++.+++. +||+++-|--...+. +-+
T Consensus 175 GktV~I~G~GnVG~~~A~~l~~~Ga----kVvvsD~~~~~-~~~a~~~ga~~v~~~ell~~~~DIliP~A~~~~I~~~~~ 249 (355)
T 1c1d_A 175 GLTVLVQGLGAVGGSLASLAAEAGA----QLLVADTDTER-VAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVA 249 (355)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHH-HHHHHHTTCEECCGGGGGGCCCSEEEECSCSCCBCHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC----EEEEEeCCccH-HHHHHhcCCEEeChHHhhcCccceecHhHHHhhcCHHHH
Confidence 4799999999999999999999985 88999999776 3333446662225567777 899998653222221 222
Q ss_pred HHhhhcccccCCCcEEEEecCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag 163 (341)
+ .+ + .++|+..+++
T Consensus 250 ~-----~l--k-~~iVie~AN~ 263 (355)
T 1c1d_A 250 R-----TL--D-CSVVAGAANN 263 (355)
T ss_dssp H-----HC--C-CSEECCSCTT
T ss_pred h-----hC--C-CCEEEECCCC
Confidence 2 23 3 4677777665
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0022 Score=60.91 Aligned_cols=90 Identities=16% Similarity=0.264 Sum_probs=55.0
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEc-CChhhhhhcCc---CC----------Ccccc--ChHHHhhcCC
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASA-PSERFKLHWPE---PM----------DFALN--DNHRIIKEAE 126 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~-r~~e~~~~l~~---~~----------g~~~~--s~~e~~~~aD 126 (341)
++||+|+| .|.+|..+.+.|.++. ..+|.... .+...-+.+.+ .+ .+.+. +..+ +.++|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p---~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vD 79 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHP---YLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVD 79 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCS---SEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCS
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCC---CcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCC
Confidence 47899999 7999999999887653 24665543 22111111110 00 11111 3333 47899
Q ss_pred EEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCC
Q psy316 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 127 vIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
+||+|+|...-.+..... + ..+..||+..+.
T Consensus 80 vVf~atp~~~s~~~a~~~----~--~aG~~VId~s~~ 110 (350)
T 2ep5_A 80 VVLSALPNELAESIELEL----V--KNGKIVVSNASP 110 (350)
T ss_dssp EEEECCCHHHHHHHHHHH----H--HTTCEEEECSST
T ss_pred EEEECCChHHHHHHHHHH----H--HCCCEEEECCcc
Confidence 999999988777766554 3 356668887653
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.67 E-value=0.002 Score=60.86 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=54.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcC--Chhhhhhc---CcCCC---------------------c-c
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAP--SERFKLHW---PEPMD---------------------F-A 114 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r--~~e~~~~l---~~~~g---------------------~-~ 114 (341)
|++||||+|+|.+|..+++.|.++. .-+|. +.++ +++.+..+ ...+| + .
T Consensus 2 m~ikVgI~G~GrIGr~l~R~l~~~p---~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 2 GKIKIGINGFGRIGRLVARVALQSE---DVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV 78 (337)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCS---SEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred CceEEEEECcCHHHHHHHHHHhCCC---CeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence 4469999999999999999988753 23444 5553 44432222 11111 0 1
Q ss_pred c--cChHHH-h--hcCCEEEEeeChHHHHHHHHHhhhcccccCCC--cEEEEec
Q psy316 115 L--NDNHRI-I--KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSS--RCIISML 161 (341)
Q Consensus 115 ~--~s~~e~-~--~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~--~iIVs~~ 161 (341)
. .++.++ . ..+|+||.|++.....+..... + ..| ++||+..
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~----l--~aGak~VVIs~p 126 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAH----L--KGGAKKVVISAP 126 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHH----H--HTTCSEEEESSC
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHH----H--HcCCCEEEEecC
Confidence 1 144443 1 4799999999987666655443 3 233 3888764
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0049 Score=53.42 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=49.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccCh----HHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDN----HRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~----~e~~~~aDvIilaV~ 133 (341)
|||.|+|+ |.+|+.+++.|++.|+ +|++.+|++++.+.+... ++ ...|. .+.+..+|+||-+.-
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~----~V~~~~R~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~d~vi~~ag 71 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH----EVLAVVRDPQKAADRLGA-TVATLVKEPLVLTEADLDSVDAVVDALS 71 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHTCT-TSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC----EEEEEEecccccccccCC-CceEEecccccccHhhcccCCEEEECCc
Confidence 57999987 9999999999999984 999999999888766442 33 11111 256788999998873
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0061 Score=51.80 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=48.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c---ccC---hHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A---LND---NHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~s---~~e~~~~aDvIilaV~ 133 (341)
|+|.|+|+ |.+|+.+++.|++.|+ +|++.+|++++.+.+.. .++ . ..+ ..++++.+|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~----~V~~~~r~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGY----EVTVLVRDSSRLPSEGP-RPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCGGGSCSSSC-CCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC----eEEEEEeChhhcccccC-CceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 68999988 9999999999999984 99999999877654422 122 1 122 3455678999998864
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0048 Score=58.61 Aligned_cols=150 Identities=13% Similarity=0.018 Sum_probs=83.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCC--CCeEEEEc--CChhh-hhh----cCc--CCCccccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCI--PAQIIASA--PSERF-KLH----WPE--PMDFALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~--~~~V~v~~--r~~e~-~~~----l~~--~~g~~~~s~~e~~~~aDvIilaV 132 (341)
+||+|+| .|.+|+.+.+.|.++++++ ..+++... |+..+ +.. +.. +.-+...+ .+.+..+|+||+|+
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~-~~~~~~~DvVf~al 88 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTE-AAVLGGHDAVFLAL 88 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECC-HHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCC-HHHhcCCCEEEECC
Confidence 6999999 8999999999998765000 13565543 23222 222 111 11111113 33456899999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhccccCCCCCCCCeEEEEcCCc---hhhhcCceEEEEe
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLSVLVPNPNDAPTIIRVMPNT---AMKYGKGITGMCH 206 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~~~~~~~~~~~~vvr~mpn~---p~~v~~g~~~l~~ 206 (341)
+.....+++..+ ..+..+|++++..- .+..++|.+.- +..+ ++...|.. +..+.+ .. +..
T Consensus 89 g~~~s~~~~~~~-------~~G~~vIDlSa~~R~~~~~~~~~~y~~~----h~~~-~vyglPEv~~n~~~i~~-~~-iIa 154 (352)
T 2nqt_A 89 PHGHSAVLAQQL-------SPETLIIDCGADFRLTDAAVWERFYGSS----HAGS-WPYGLPELPGARDQLRG-TR-RIA 154 (352)
T ss_dssp TTSCCHHHHHHS-------CTTSEEEECSSTTTCSCHHHHHHHHSSC----CCCC-CCBSCTTSTTHHHHHTT-CS-EEE
T ss_pred CCcchHHHHHHH-------hCCCEEEEECCCccCCcchhhhhhcccc----CCCC-eeEEecccccCHHHHhc-CC-EEE
Confidence 987666655543 24678888876653 35567887721 1111 23444544 222332 22 344
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCe
Q psy316 207 DVHLDKESEHLNMAIKIMEQGGIV 230 (341)
Q Consensus 207 ~~~~~~~~~~~~~v~~ll~~lG~~ 230 (341)
++.|.. ....-.+.+|.+..+..
T Consensus 155 nPgC~t-t~~~lal~PL~~~~~i~ 177 (352)
T 2nqt_A 155 VPGCYP-TAALLALFPALAADLIE 177 (352)
T ss_dssp CCCHHH-HHHHHHHHHHHHTTCSC
T ss_pred cCCHHH-HHHHHHHHHHHHcCCCc
Confidence 555544 12344567787776653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.004 Score=55.33 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=55.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-c-c-cChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-A-L-NDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~-~-~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.++|.|||+|.+|..-++.|+++|. +|++++++.. .++.+.++.++ . . .-..+.+..+|+||.|+....+..
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA----~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~N~ 106 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGA----AITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAVNK 106 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCC----CEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHHHH
Confidence 4789999999999999999999994 8999987542 34555443333 1 1 112345778999999998777666
Q ss_pred HHHHh
Q psy316 140 AIQGL 144 (341)
Q Consensus 140 vl~~i 144 (341)
.+...
T Consensus 107 ~I~~~ 111 (223)
T 3dfz_A 107 FVKQH 111 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0027 Score=55.86 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=50.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-C-Cc----cccChHHHhhcCCEEEEeeC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-M-DF----ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-~-g~----~~~s~~e~~~~aDvIilaV~ 133 (341)
+.|+|.|.|+ |.+|..+++.|++.|+ +|++.+|++++++.+... . .. ...+..+.+..+|+||.+..
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~----~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag 93 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH----EPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG 93 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC----eEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence 4578999997 9999999999999994 999999998887665431 1 11 11445566778999998864
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00083 Score=61.82 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=36.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
.+++.|+|+|.+|.+++..|.+.| +|++++|++++++.+.+
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~G-----~V~v~~r~~~~~~~l~~ 168 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKDN-----NIIIANRTVEKAEALAK 168 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-----EEEEECSSHHHHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHCC-----CEEEEECCHHHHHHHHH
Confidence 468999999999999999998876 89999999988877654
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0097 Score=58.08 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=63.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEc----CC----hh-h---hhhcCcCC----Cc--cccChHHHhhcCC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA----PS----ER-F---KLHWPEPM----DF--ALNDNHRIIKEAE 126 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~----r~----~e-~---~~~l~~~~----g~--~~~s~~e~~~~aD 126 (341)
.||.|+|+|..|.+++..|.+.|. +..+|+++| |+ .. . +..+++++ +. ...+..++++.+|
T Consensus 187 ~rvlvlGAGgAg~aia~~L~~~G~-~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aD 265 (439)
T 2dvm_A 187 ITLALFGAGAAGFATLRILTEAGV-KPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDAD 265 (439)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHcCC-CcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCC
Confidence 589999999999999999999983 225899999 87 22 2 22221111 11 1345678889999
Q ss_pred EEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 127 YVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 127 vIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+||=+++. ..+.+ +. ...+ .++.+|+++.+...
T Consensus 266 VlInaT~~~~G~~~~---e~-v~~m--~~~~iVfDLynP~~ 300 (439)
T 2dvm_A 266 VLISFTRPGPGVIKP---QW-IEKM--NEDAIVFPLANPVP 300 (439)
T ss_dssp EEEECSCCCSSSSCH---HH-HTTS--CTTCEEEECCSSSC
T ss_pred EEEEcCCCccCCCCh---HH-HHhc--CCCCEEEECCCCCC
Confidence 99999986 43322 12 2234 56779999866553
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0039 Score=58.30 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=50.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cChH---HH-hhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---NDNH---RI-IKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s~~---e~-~~~aDvIilaV~~ 134 (341)
.++|.|+|+|..|..+++.|.+.| + |.+.++++++.+ +.+ .+. .. .+.+ ++ ++++|.+++++++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g----~-v~vid~~~~~~~-~~~-~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~ 187 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE----V-FVLAEDENVRKK-VLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLES 187 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC----E-EEEESCGGGHHH-HHH-TTCEEEESCTTSHHHHHHTCSTTEEEEEECCSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC----c-EEEEeCChhhhh-HHh-CCcEEEEeCCCCHHHHHhcChhhccEEEEcCCc
Confidence 357999999999999999998877 6 899999999988 655 354 22 2222 22 5689999999986
Q ss_pred HH
Q psy316 135 QY 136 (341)
Q Consensus 135 ~~ 136 (341)
+.
T Consensus 188 d~ 189 (336)
T 1lnq_A 188 DS 189 (336)
T ss_dssp HH
T ss_pred cH
Confidence 53
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0023 Score=61.51 Aligned_cols=91 Identities=10% Similarity=0.087 Sum_probs=65.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh-------hhhhhcCcCCCc------cccChHHHhhcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE-------RFKLHWPEPMDF------ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~-------e~~~~l~~~~g~------~~~s~~e~~~~aDvIila 131 (341)
.||.|+|+|.-|.++++.+...|. .+|+++|++- +++..+++.+.- ...++.|+++.+|++|=+
T Consensus 189 ~kVVi~GAGaAG~~iA~ll~~~Ga---~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~ 265 (398)
T 2a9f_A 189 VSIVVNGGGSAGLSITRKLLAAGA---TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGV 265 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC---CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEEC
T ss_pred cEEEEECCCHHHHHHHHHHHHcCC---CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEec
Confidence 589999999999999999999994 5999999863 224444332211 234678999999998755
Q ss_pred eChH-HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 MKPQ-YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V~~~-~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
..|. .-+++++.+ .++.+|+.+++..+
T Consensus 266 Sapgl~T~EmVk~M-------a~~pIIfalsNPt~ 293 (398)
T 2a9f_A 266 SAPGVLKAEWISKM-------AARPVIFAMANPIP 293 (398)
T ss_dssp CSTTCCCHHHHHTS-------CSSCEEEECCSSSC
T ss_pred CCCCCCCHHHHHhh-------CCCCEEEECCCCCc
Confidence 4454 345666666 57889999998764
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0041 Score=59.24 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=44.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCC-Cc-cccChHHHhhcC---------------
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPM-DF-ALNDNHRIIKEA--------------- 125 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~~a--------------- 125 (341)
++||||||+|.||+.+++.|.+...-...+| .++++++. .+.+++ |+ .+.+..+++.+.
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~---~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~ 80 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERS---LISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK 80 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBE---EECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChh---hhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhh
Confidence 4689999999999999999987530001244 46776432 344434 55 334555544432
Q ss_pred -----CEEEEeeChHH
Q psy316 126 -----EYVFLAMKPQY 136 (341)
Q Consensus 126 -----DvIilaV~~~~ 136 (341)
|+|+.|++...
T Consensus 81 ~~~~~DvVV~~t~~~~ 96 (358)
T 1ebf_A 81 TSPKPVILVDNTSSAY 96 (358)
T ss_dssp TCSSCEEEEECSCCHH
T ss_pred hccCCcEEEEcCCChH
Confidence 78999998653
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=60.74 Aligned_cols=91 Identities=9% Similarity=0.024 Sum_probs=52.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhc-----CCCCCCe-EEEEcCChhhhh------hc---CcCCC-c-c-ccChHHHhh--c
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT-----GLCIPAQ-IIASAPSERFKL------HW---PEPMD-F-A-LNDNHRIIK--E 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~-----G~~~~~~-V~v~~r~~e~~~------~l---~~~~g-~-~-~~s~~e~~~--~ 124 (341)
.||+|||+|+||+.+++.|.+. |. .-+ +.+++|+++... .+ .++.| + . ..+..+++. +
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~--~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~ 82 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAF--SIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEA 82 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--C--EEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSC
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCC--CEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCC
Confidence 6899999999999999999874 21 123 347888754321 11 11112 1 1 115566664 5
Q ss_pred CCEEEEeeChHH-HHHHHHHhhhcccccCCCcEEEEe
Q psy316 125 AEYVFLAMKPQY-LDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 125 aDvIilaV~~~~-v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
.|+|+.|+|+.. .....+.. ...+ ..++-||+.
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~-~~aL--~aGkhVVta 116 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLY-RMAF--ESGMNVVTA 116 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHH-HHHH--HTTCEEEEC
T ss_pred CCEEEECCCCccccchHHHHH-HHHH--HCCCeEEEc
Confidence 899999998752 22222222 3334 456666654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0062 Score=55.69 Aligned_cols=73 Identities=10% Similarity=0.195 Sum_probs=55.5
Q ss_pred CCCCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 62 PMWTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 62 ~m~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.-.+++.|||.|+ +|..++..|...|. +|++++++. .+..+.+++||+||.+++...+
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA----tVtv~~~~t--------------~~L~~~~~~ADIVI~Avg~p~~--- 206 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNY----TVSVCHSKT--------------KDIGSMTRSSKIVVVAVGRPGF--- 206 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTC----EEEEECTTC--------------SCHHHHHHHSSEEEECSSCTTC---
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCC----eEEEEeCCc--------------ccHHHhhccCCEEEECCCCCcc---
Confidence 3457899999986 89999999999985 899998631 2567889999999999974221
Q ss_pred HHHhhhcccccCCCcEEEEe
Q psy316 141 IQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~ 160 (341)
+. ...+ +++.+||++
T Consensus 207 I~---~~~v--k~GavVIDv 221 (276)
T 3ngx_A 207 LN---REMV--TPGSVVIDV 221 (276)
T ss_dssp BC---GGGC--CTTCEEEEC
T ss_pred cc---Hhhc--cCCcEEEEe
Confidence 11 2346 778888876
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.013 Score=52.91 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..+|.|||+|.+|+.++++|...|. .+++++|++.
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gv---g~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGV---GTLVLADDDD 62 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTC---SEEEEECCCB
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCC---CeEEEEeCCC
Confidence 4689999999999999999999996 6899998764
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0099 Score=56.25 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=62.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCChh--hhh----hcCc-CC----Cc-cccChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSER--FKL----HWPE-PM----DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e--~~~----~l~~-~~----g~-~~~s~~e~~~~aDvI 128 (341)
.||+|||+ |++|++++..|....++. +.++.++|.++. +++ .|.. .+ .+ ...+..+.+++||+|
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~advV 104 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIA 104 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCEE
Confidence 49999996 999999999887765433 237899998653 222 1211 01 12 445677889999999
Q ss_pred EEee----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 129 FLAM----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 129 ilaV----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|++- +|. .++++.+.+ ..+- .++.+|+-+.+.+..
T Consensus 105 vi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i-~~~a--~~~~~vlvvsNPvd~ 155 (345)
T 4h7p_A 105 IMCGAFPRKAGMERKDLLEMNARIFKEQGEAI-AAVA--ASDCRVVVVGNPANT 155 (345)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHS--CTTCEEEECSSSHHH
T ss_pred EECCCCCCCCCCCHHHHHHHhHHHHHHHHHHH-Hhhc--cCceEEEEeCCCcch
Confidence 9974 231 133344444 4443 466666666676553
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=55.42 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=54.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHh-cCCCCCCeEEEEc-CChhh-hhhcCc-CCCc-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIR-TGLCIPAQIIASA-PSERF-KLHWPE-PMDF-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~-~G~~~~~~V~v~~-r~~e~-~~~l~~-~~g~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
+||+|+| .|.+|..+.+.++. +++ +...++... ++..+ ...+.. +.-+ ...+..+ ++.+|+||+|++...-.
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~-~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~s~ 79 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDF-DAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDYTN 79 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGG-GGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCC-CeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchhHH
Confidence 6899999 89999999995554 332 223454443 33211 111111 1111 1223333 57899999999988777
Q ss_pred HHHHHhhhcccccCCC--cEEEEecCC
Q psy316 139 SAIQGLVNDKVTLNSS--RCIISMLVG 163 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~--~iIVs~~ag 163 (341)
+....+ . ..| .+||+..+.
T Consensus 80 ~~a~~~-~-----~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 80 EIYPKL-R-----ESGWQGYWIDAASS 100 (367)
T ss_dssp HHHHHH-H-----HTTCCCEEEECSST
T ss_pred HHHHHH-H-----HCCCCEEEEcCChh
Confidence 777665 3 234 388987653
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.023 Score=51.22 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=49.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcCCCc--c---ccC---hHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEPMDF--A---LND---NHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~s---~~e~~~~aDvIilaV~ 133 (341)
|||.|.|+ |.+|+.+++.|.+. | ++|++..|++++...+.. .++ . ..+ ..++++.+|+||.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g----~~V~~~~R~~~~~~~~~~-~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI----DHFHIGVRNVEKVPDDWR-GKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC----TTEEEEESSGGGSCGGGB-TTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC----CcEEEEECCHHHHHHhhh-CCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 57999985 99999999999887 6 489999999988776654 243 1 122 3456778999998864
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0067 Score=56.73 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=48.4
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeEEEEcCCh--hhhhhcCcCCCc-cc--cChHHHh-hcCCEEEEe--eChH
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQIIASAPSE--RFKLHWPEPMDF-AL--NDNHRII-KEAEYVFLA--MKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~v~~r~~--e~~~~l~~~~g~-~~--~s~~e~~-~~aDvIila--V~~~ 135 (341)
+||.|||.|.+|.+ +|+.|.+.|+ +|+++|+++ ...+.|.+ .|+ .. .+..++. .++|+||++ +|++
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~----~V~~~D~~~~~~~~~~L~~-~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~ 79 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGF----EVSGCDAKMYPPMSTQLEA-LGIDVYEGFDAAQLDEFKADVYVIGNVAKRG 79 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTC----EEEEEESSCCTTHHHHHHH-TTCEEEESCCGGGGGSCCCSEEEECTTCCTT
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCC----EEEEEcCCCCcHHHHHHHh-CCCEEECCCCHHHcCCCCCCEEEECCCcCCC
Confidence 68999999999995 9999999995 999999864 24455665 476 32 3344444 479999986 5653
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0068 Score=56.14 Aligned_cols=71 Identities=13% Similarity=0.261 Sum_probs=54.5
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChH--HHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNH--RIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~--e~~~~aDvIilaV~~~~v~~v 140 (341)
.+++.|||.|+ +|..++..|.+.|. +|++++|... ++. +.+++||+||.+++...+
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~--- 223 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMKENA----TVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY--- 223 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTC----EEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC---
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----eEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC---
Confidence 47899999987 79999999999985 8999987322 234 778999999999974321
Q ss_pred HHHhhhcccccCCCcEEEEe
Q psy316 141 IQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~ 160 (341)
+. ...+ +++.+||++
T Consensus 224 I~---~~~v--k~GavVIDv 238 (300)
T 4a26_A 224 VK---GEWI--KEGAAVVDV 238 (300)
T ss_dssp BC---GGGS--CTTCEEEEC
T ss_pred Cc---HHhc--CCCcEEEEE
Confidence 21 3346 788899987
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0068 Score=55.59 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=54.1
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhc--CCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNM-AQAVATSLIRT--GLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~m-G~aia~~L~~~--G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.+++.|||.|++ |..++..|... | .+|++++|+. .+..+.++++|+||.++....+
T Consensus 158 gk~vvVvG~s~iVG~p~A~lL~~~g~~----atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~--- 216 (281)
T 2c2x_A 158 GAHVVVIGRGVTVGRPLGLLLTRRSEN----ATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL--- 216 (281)
T ss_dssp TCEEEEECCCTTTHHHHHHHHTSTTTC----CEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC---
T ss_pred CCEEEEECCCcHHHHHHHHHHhcCCCC----CEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc---
Confidence 478999999986 99999999887 5 4899997653 2567788999999999974332
Q ss_pred HHHhhhcccccCCCcEEEEe
Q psy316 141 IQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~ 160 (341)
+. ...+ +++.+||++
T Consensus 217 I~---~~~v--k~GavVIDV 231 (281)
T 2c2x_A 217 LT---ADMV--RPGAAVIDV 231 (281)
T ss_dssp BC---GGGS--CTTCEEEEC
T ss_pred cC---HHHc--CCCcEEEEc
Confidence 21 2346 778888876
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0056 Score=53.09 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=47.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccC----hHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALND----NHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s----~~e~~~~aDvIilaV~ 133 (341)
|||.|+| +|.+|..+++.|++.|+ +|++.+|++++.+.+.. ... -..+ ..++++.+|+||.+..
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~----~V~~~~R~~~~~~~~~~-~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY----QIYAGARKVEQVPQYNN-VKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC----EEEEEESSGGGSCCCTT-EEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCccchhhcCC-ceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 5899998 69999999999999984 99999999887655411 111 1223 2344668999998874
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.021 Score=57.33 Aligned_cols=98 Identities=14% Similarity=0.027 Sum_probs=62.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccC---hHH-HhhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALND---NHR-IIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s---~~e-~~~~aDvIilaV~~~~v~~v 140 (341)
++|.|||+|++|..+++.|.+.|+ +|.+.++++++.+.+..-.-.-.++ +.+ -++++|.++.++..+...-+
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~----~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~ni~ 424 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPV----PFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDSTNIF 424 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC----CEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC----CEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCchHHHH
Confidence 689999999999999999999984 9999999998877664100001112 122 25689999999987643222
Q ss_pred HHHhhhcccccCCC-cEEEEecCCCCHHHH
Q psy316 141 IQGLVNDKVTLNSS-RCIISMLVGVDLETL 169 (341)
Q Consensus 141 l~~i~~~~l~~~~~-~iIVs~~agi~~~~l 169 (341)
+-.+ ...+ +++ ++|.-....-..+.+
T Consensus 425 ~~~~-ak~l--~~~~~iiar~~~~~~~~~l 451 (565)
T 4gx0_A 425 LTLA-CRHL--HSHIRIVARANGEENVDQL 451 (565)
T ss_dssp HHHH-HHHH--CSSSEEEEEESSTTSHHHH
T ss_pred HHHH-HHHH--CCCCEEEEEECCHHHHHHH
Confidence 2222 3334 555 454444333333433
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.011 Score=54.41 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=54.4
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||.|+ +|..++..|...|. +|++++|+. .+..+.++++|+||.+++...+ +.
T Consensus 161 Gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~~---I~ 219 (285)
T 3l07_A 161 GAYAVVVGASNVVGKPVSQLLLNAKA----TVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF---IT 219 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTC----EEEEECTTC--------------SSHHHHHTTCSEEEECCCCTTC---BC
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCC----eEEEEeCCc--------------hhHHHhcccCCEEEECCCCCCC---CC
Confidence 47899999988 69999999999985 899998641 2567788999999999974221 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 220 ---~~~v--k~GavVIDv 232 (285)
T 3l07_A 220 ---ADMV--KEGAVVIDV 232 (285)
T ss_dssp ---GGGS--CTTCEEEEC
T ss_pred ---HHHc--CCCcEEEEe
Confidence 3346 788888876
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0057 Score=57.13 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=47.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCC---CCCeEEEEcCCh--hhhh----hcCc---CC--Cc-cccChHHHhhcCC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLC---IPAQIIASAPSE--RFKL----HWPE---PM--DF-ALNDNHRIIKEAE 126 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~---~~~~V~v~~r~~--e~~~----~l~~---~~--g~-~~~s~~e~~~~aD 126 (341)
++|||.|+|+ |.+|+.++..|++.|++ ..++|.++|+++ ++.+ .+.. .+ .+ ...+..++++++|
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D 82 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD 82 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCC
Confidence 4579999997 99999999999988742 224899999864 2221 2211 01 12 2245577788999
Q ss_pred EEEEee
Q psy316 127 YVFLAM 132 (341)
Q Consensus 127 vIilaV 132 (341)
+||.+-
T Consensus 83 ~Vih~A 88 (327)
T 1y7t_A 83 YALLVG 88 (327)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999874
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.021 Score=54.05 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=64.0
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEc-CC-hh-hhhh----cCcCCCccccChHHHhhcCCEEEEeeCh
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASA-PS-ER-FKLH----WPEPMDFALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~-r~-~e-~~~~----l~~~~g~~~~s~~e~~~~aDvIilaV~~ 134 (341)
-+.||+|||+ |..|.-|.+.|.++- ..+|.... ++ .. +... +..++-+...+..+...++|++|+|+|.
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP---~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~ 88 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHP---EAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPA 88 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCT---TEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCST
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCC---CcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCc
Confidence 3468999976 999999999998763 24565443 22 11 1111 2222222222445555789999999999
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEEecCCC--C-HHHHHHhcc
Q psy316 135 QYLDSAIQGLVNDKVTLNSSRCIISMLVGV--D-LETLKKKLS 174 (341)
Q Consensus 135 ~~v~~vl~~i~~~~l~~~~~~iIVs~~agi--~-~~~l~~~l~ 174 (341)
..-.++...+ .+..||+.++.. . .+..++|.+
T Consensus 89 ~~s~~~~~~~--------~g~~VIDlSsdfRl~~~~~y~~~y~ 123 (351)
T 1vkn_A 89 GASYDLVREL--------KGVKIIDLGADFRFDDPGVYREWYG 123 (351)
T ss_dssp THHHHHHTTC--------CSCEEEESSSTTTCSSHHHHHHHHC
T ss_pred HHHHHHHHHh--------CCCEEEECChhhhCCchhhhhhhcC
Confidence 8776665433 467899987654 2 355677766
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.035 Score=49.59 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=54.7
Q ss_pred CeEEEEcc-c-HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 65 TKVGFIGA-G-NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G-~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
+++.|.|+ | .+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....++.++.+ .+..+..
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~-~~~~~~~~~~~Dl~~~~~v~~ 90 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGA----DVVISDYHERRLGETRDQL-------AD-LGLGRVEAVVCDVTSTEAVDA 90 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HT-TCSSCEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCC----EEEEecCCHHHHHHHHHHH-------Hh-cCCCceEEEEeCCCCHHHHHH
Confidence 45667788 8 599999999999994 8999999988776554321 00 11234555544 3567777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|+.++
T Consensus 91 ~~~~~-~~~~--g~id~li~~Ag 110 (266)
T 3o38_A 91 LITQT-VEKA--GRLDVLVNNAG 110 (266)
T ss_dssp HHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHH-HHHh--CCCcEEEECCC
Confidence 77776 5444 33357787644
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.012 Score=54.49 Aligned_cols=71 Identities=6% Similarity=0.157 Sum_probs=55.4
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||.|+ +|..++..|...|. +|++++++. .+..+.+++||+||.++....+ +.
T Consensus 165 gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~~---I~ 223 (301)
T 1a4i_A 165 GRHAVVVGRSKIVGAPMHDLLLWNNA----TVTTCHSKT--------------AHLDEEVNKGDILVVATGQPEM---VK 223 (301)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTC----EEEEECTTC--------------SSHHHHHTTCSEEEECCCCTTC---BC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC----eEEEEECCc--------------ccHHHHhccCCEEEECCCCccc---CC
Confidence 57899999997 69999999999884 899997541 2567888999999999975321 21
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 224 ---~~~v--k~GavVIDV 236 (301)
T 1a4i_A 224 ---GEWI--KPGAIVIDC 236 (301)
T ss_dssp ---GGGS--CTTCEEEEC
T ss_pred ---HHHc--CCCcEEEEc
Confidence 3346 788999987
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0047 Score=58.82 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=56.4
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEE-EEcCCh--hhhhhc---------C---cCCCccccChHHHhhcCC
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQII-ASAPSE--RFKLHW---------P---EPMDFALNDNHRIIKEAE 126 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~--e~~~~l---------~---~~~g~~~~s~~e~~~~aD 126 (341)
|++||+||| .|..|.-|.+.|.++ +..++. +..++. .+.... . .++.+...+. +.+.++|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~h---P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~-~~~~~vD 81 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNH---PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDP-KLMDDVD 81 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTC---SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCG-GGCTTCC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhC---CCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCH-HHhcCCC
Confidence 357899999 599999999966554 223554 333322 122211 0 0111111122 3357899
Q ss_pred EEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 127 vIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
+||+|+|...-.+....+ + ..+..+|++++..
T Consensus 82 vvf~a~p~~~s~~~a~~~----~--~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 82 IIFSPLPQGAAGPVEEQF----A--KEGFPVISNSPDH 113 (359)
T ss_dssp EEEECCCTTTHHHHHHHH----H--HTTCEEEECSSTT
T ss_pred EEEECCChHHHHHHHHHH----H--HCCCEEEEcCCCc
Confidence 999999998877777665 3 4677889886653
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0047 Score=58.82 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=56.3
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEE-EEcCCh--hhhhhc---------C---cCCCccccChHHHhhcCC
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQII-ASAPSE--RFKLHW---------P---EPMDFALNDNHRIIKEAE 126 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~--e~~~~l---------~---~~~g~~~~s~~e~~~~aD 126 (341)
|++||+||| .|..|.-|.+.|.++ +..++. +..++. .+.... . .++.+...+. +.+.++|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~h---P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~-~~~~~vD 81 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNH---PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDP-KLMDDVD 81 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTC---SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCG-GGCTTCC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhC---CCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCH-HHhcCCC
Confidence 357899999 599999999966554 223554 333322 122211 0 0111111122 3357899
Q ss_pred EEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 127 vIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
+||+|+|...-.+....+ + ..+..+|++++..
T Consensus 82 vvf~a~p~~~s~~~a~~~----~--~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 82 IIFSPLPQGAAGPVEEQF----A--KEGFPVISNSPDH 113 (359)
T ss_dssp EEEECCCTTTHHHHHHHH----H--HTTCEEEECSSTT
T ss_pred EEEECCChHHHHHHHHHH----H--HCCCEEEEcCCCc
Confidence 999999998877777665 3 4677888886653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.011 Score=54.47 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=47.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c---ccC---hHHHhhcCCEEEEeeC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A---LND---NHRIIKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~s---~~e~~~~aDvIilaV~ 133 (341)
++|+|.|.|+ |.+|+.+++.|++.|+ +|++.+|++.+.+.+.. .++ . ..+ ..++++.+|+||-+..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~~l~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGH----DLVLIHRPSSQIQRLAY-LEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC----EEEEEECTTSCGGGGGG-GCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEecChHhhhhhcc-CCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 3468999985 9999999999999984 99999998776655543 132 1 122 3455678999998753
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0063 Score=57.35 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=47.7
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCC---CCeEEEEcCCh--hhhh----hcCc-CC----Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCI---PAQIIASAPSE--RFKL----HWPE-PM----DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~---~~~V~v~~r~~--e~~~----~l~~-~~----g~-~~~s~~e~~~~aDv 127 (341)
++||+|+| +|.+|+.++..|...+.+. +..+.++|+++ ++++ .|.. .+ ++ ...+..+.+++||+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 46899999 7999999999999887532 22389999964 2222 2221 01 12 33456778999999
Q ss_pred EEEee
Q psy316 128 VFLAM 132 (341)
Q Consensus 128 IilaV 132 (341)
||++-
T Consensus 83 VvitA 87 (333)
T 5mdh_A 83 AILVG 87 (333)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99875
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0099 Score=54.68 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=54.5
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||.|+ .|..++..|...|. +|++++++. .+..+.+++||+||.+++...+ +.
T Consensus 159 gk~vvVIG~s~iVG~p~A~lL~~~gA----tVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~l---I~ 217 (288)
T 1b0a_A 159 GLNAVVIGASNIVGRPMSMELLLAGC----TTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGF---IP 217 (288)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTTC----EEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTC---BC
T ss_pred CCEEEEECCChHHHHHHHHHHHHCCC----eEEEEeCCc--------------hhHHHHhccCCEEEECCCCcCc---CC
Confidence 47899999997 59999999999884 899997542 2567788999999999974331 21
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 218 ---~~~v--k~GavVIDV 230 (288)
T 1b0a_A 218 ---GDWI--KEGAIVIDV 230 (288)
T ss_dssp ---TTTS--CTTCEEEEC
T ss_pred ---HHHc--CCCcEEEEc
Confidence 2346 788888876
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.015 Score=55.85 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=56.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEE-EE-cC-Chhh-hhh---cC---------cCCCccccChHHHhhcCC
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQII-AS-AP-SERF-KLH---WP---------EPMDFALNDNHRIIKEAE 126 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~-v~-~r-~~e~-~~~---l~---------~~~g~~~~s~~e~~~~aD 126 (341)
++||+||| .|..|.-|.+.|.++- ..+|. ++ .+ +..+ ... +. .++-+...+..+.+.++|
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp---~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~D 95 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHP---EFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECD 95 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCS---SEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCS
T ss_pred ccEEEEECCCChHHHHHHHHHHcCC---CceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCC
Confidence 35899999 5999999999776643 23563 43 23 3221 111 11 111111112221467899
Q ss_pred EEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCC
Q psy316 127 YVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 127 vIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
+||+|+|...-.++...+ + ..+..||++++..
T Consensus 96 vvf~alp~~~s~~~~~~~----~--~~G~~VIDlSa~f 127 (381)
T 3hsk_A 96 VVFSGLDADVAGDIEKSF----V--EAGLAVVSNAKNY 127 (381)
T ss_dssp EEEECCCHHHHHHHHHHH----H--HTTCEEEECCSTT
T ss_pred EEEECCChhHHHHHHHHH----H--hCCCEEEEcCCcc
Confidence 999999998888877665 3 4577889886653
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.014 Score=53.61 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=54.9
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||.|+ +|..++..|...|. +|++++|+. .++.+.+++||+||.+++...+ +.
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~~gA----tVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~---I~ 218 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLNAGA----TVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL---LR 218 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTC----EEEEECTTC--------------SCHHHHHTTCSEEEECSSCTTC---BC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC----eEEEEeCCc--------------hhHHHHhhcCCEEEECCCCCCc---CC
Confidence 47899999988 69999999999985 899998642 2567788999999999974221 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 219 ---~~~v--k~GavVIDV 231 (285)
T 3p2o_A 219 ---SDMV--KEGVIVVDV 231 (285)
T ss_dssp ---GGGS--CTTEEEEEC
T ss_pred ---HHHc--CCCeEEEEe
Confidence 3346 788888876
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0068 Score=59.62 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=33.3
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 61 VPMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 61 ~~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
+..++||.|||+|.||+.++..|.++.-+...+|++.+++...
T Consensus 10 ~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~ 52 (480)
T 2ph5_A 10 ILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK 52 (480)
T ss_dssp BCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS
T ss_pred ecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh
Confidence 3466899999999999999999988753333478888876543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.032 Score=52.62 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..||.|||+|.+|+.+++.|..+|. .+|+++|++.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGV---g~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCE
Confidence 4689999999999999999999996 6899998754
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.01 Score=56.03 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHh---cCCCCCCeEE-EEcC-ChhhhhhcCc---CC-----------------C--c-c
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIR---TGLCIPAQII-ASAP-SERFKLHWPE---PM-----------------D--F-A 114 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~---~G~~~~~~V~-v~~r-~~e~~~~l~~---~~-----------------g--~-~ 114 (341)
|++||||+|+|.+|..+.+.|.+ +. .-+|. +.++ +++.+..+.+ -+ | + .
T Consensus 1 M~ikVgI~G~G~iGr~l~r~l~~~~~~~---~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v 77 (339)
T 2x5j_O 1 MTVRVAINGFGRIGRNVVRALYESGRRA---EITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRV 77 (339)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTSGGG---TEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEE
T ss_pred CCeEEEEECcCHHHHHHHHHHHcCCCCC---CEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEE
Confidence 45799999999999999999987 42 12554 4444 3332222110 00 1 1 1
Q ss_pred --ccChHHH-hh--cCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 115 --LNDNHRI-IK--EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 115 --~~s~~e~-~~--~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..++.++ .. .+|+||.|++...-.+..... ... ...++|||..+
T Consensus 78 ~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~-l~~---GakkVVId~~a 126 (339)
T 2x5j_O 78 LHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAH-IAA---GAKKVLFSHPG 126 (339)
T ss_dssp ECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHH-HHT---TCSEEEESSCC
T ss_pred EecCChHHCcccccCCCEEEECCCccccHHHHHHH-HHc---CCCEEEEeccc
Confidence 1234443 22 799999999876555555443 211 23347887643
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.01 Score=53.61 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=44.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc------cccChHHHhhc-CCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF------ALNDNHRIIKE-AEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~------~~~s~~e~~~~-aDvIilaV~ 133 (341)
|||.|.|+|.+|+.+++.|++.|+ +|++.+|++++.. ..... ...+..++++. +|+||-+..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQGH----EVTGLRRSAQPMP---AGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC----CEEEEECTTSCCC---TTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC----EEEEEeCCccccc---cCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 689999999999999999999984 9999999866532 11111 11222344555 999997763
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.018 Score=52.55 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=44.0
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCcc---c--cChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFA---L--NDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~---~--~s~~e~~~~aDvIilaV 132 (341)
|+|+|.|.| +|.+|+.+++.|++.|+ +|++.+|++...+ +.. .... . .+..++++.+|+||-+.
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~-~~~-~~~~~~Dl~~~~~~~~~~~~d~Vih~a 70 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGN----TPIILTRSIGNKA-IND-YEYRVSDYTLEDLINQLNDVDAVVHLA 70 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCCC------C-CEEEECCCCHHHHHHHTTTCSEEEECC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCC----EEEEEeCCCCccc-CCc-eEEEEccccHHHHHHhhcCCCEEEEcc
Confidence 678999998 59999999999999984 9999999854443 321 2111 1 12344567899999875
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.022 Score=54.42 Aligned_cols=100 Identities=10% Similarity=0.107 Sum_probs=60.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCC-CeEEE--EcCC--hhhhh----hcCcC---C--Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIP-AQIIA--SAPS--ERFKL----HWPEP---M--DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~-~~V~v--~~r~--~e~~~----~l~~~---~--g~-~~~s~~e~~~~aDv 127 (341)
.+||+||| +|.+|.+++..|...+.+.. ..|.+ ++.. +++++ .|..- + ++ ...+..+.+++||+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 46899999 79999999999999886543 12555 4432 22222 12210 1 22 34456788999999
Q ss_pred EEEee--C--hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 128 VFLAM--K--PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 128 IilaV--~--~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
||++- | |. .++++...+ ..+. .++.+|+-+++.++.
T Consensus 112 VVitag~prkpG~tR~DLl~~N~~I~k~i~~~i-~~~a--~p~~ivlVvsNPvD~ 163 (375)
T 7mdh_A 112 ALLIGAKPRGPGMERAALLDINGQIFADQGKAL-NAVA--SKNVKVLVVGNPCNT 163 (375)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHS--CTTCEEEECSSSHHH
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHhc--CCCeEEEEecCchhH
Confidence 99974 2 21 123333344 4443 466677767676553
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.019 Score=53.87 Aligned_cols=65 Identities=9% Similarity=0.122 Sum_probs=47.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcCCCc--c---cc-C---hHHHhhcCCEEEEee
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEPMDF--A---LN-D---NHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~-s---~~e~~~~aDvIilaV 132 (341)
+|+|.|.| +|-+|+.+++.|++. | ++|++.+|++++...+....++ . .. + ..++++.+|+||-+.
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g----~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A 99 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTD----WEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV 99 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSS----CEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCC----CEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence 47899998 599999999999998 7 4999999988777665442233 1 12 2 234567899999753
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.019 Score=53.43 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=46.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC--Chhhhhh----cC---cCCC--c-cc--c-ChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP--SERFKLH----WP---EPMD--F-AL--N-DNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r--~~e~~~~----l~---~~~g--~-~~--~-s~~e~~~~aDvI 128 (341)
|||.|||+ |.+|+.++..|+..|+ ..++.++|+ ++++++. +. ...+ + .. . +..++++++|+|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~--~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~V 78 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPF--MKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVV 78 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTT--CCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCC--CCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEE
Confidence 58999999 9999999999998874 247899998 7654431 11 1111 2 21 1 247789999999
Q ss_pred EEee
Q psy316 129 FLAM 132 (341)
Q Consensus 129 ilaV 132 (341)
|++.
T Consensus 79 i~~A 82 (313)
T 1hye_A 79 IITS 82 (313)
T ss_dssp EECC
T ss_pred EECC
Confidence 9886
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.03 Score=49.00 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=48.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhc--CCCCCCeEEEEcCChhhhhhcCcCCCc---cccC---hHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRT--GLCIPAQIIASAPSERFKLHWPEPMDF---ALND---NHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~--G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s---~~e~~~~aDvIilaV 132 (341)
++++|.|.|+ |.+|+.+++.|++. | ++|++.+|++++.+.+...... -..+ ..++++..|+||-+.
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a 77 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDK----FVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILT 77 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTT----CEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCC----cEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEec
Confidence 3578999985 99999999999998 5 5999999998877665322111 1222 345567899999775
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.031 Score=54.81 Aligned_cols=89 Identities=12% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCeEEEEccc----HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHH
Q psy316 63 MWTKVGFIGAG----NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~G----~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
-.++|+|||++ ++|..+.++|.+.| ...|+..+... +.+ .|+ .+.+..++....|++++++|+..+
T Consensus 7 ~p~siAVvGas~~~~~~g~~v~~~l~~~g---~~~v~pVnP~~---~~i---~G~~~y~sl~~lp~~~Dlavi~vp~~~~ 77 (457)
T 2csu_A 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK---KGKVYPVNIKE---EEV---QGVKAYKSVKDIPDEIDLAIIVVPKRFV 77 (457)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCC---SSEEEEECSSC---SEE---TTEECBSSTTSCSSCCSEEEECSCHHHH
T ss_pred CCCeEEEECcCCCCCchHHHHHHHHHHcC---CCEEEEECCCC---CeE---CCEeccCCHHHcCCCCCEEEEecCHHHH
Confidence 35789999997 89999999998875 25788777652 122 477 677777777789999999999999
Q ss_pred HHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
.+++++. ... .- +.++-+..|++
T Consensus 78 ~~~v~e~-~~~---Gi-~~vv~~s~G~~ 100 (457)
T 2csu_A 78 KDTLIQC-GEK---GV-KGVVIITAGFG 100 (457)
T ss_dssp HHHHHHH-HHH---TC-CEEEECCCSST
T ss_pred HHHHHHH-HHc---CC-CEEEEecCCCC
Confidence 9999887 332 11 34555667764
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.019 Score=52.56 Aligned_cols=77 Identities=12% Similarity=0.183 Sum_probs=52.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hhhh---cCcCCCc--c---ccC---hHHHhhcCCEEE
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSER-FKLH---WPEPMDF--A---LND---NHRIIKEAEYVF 129 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~~~---l~~~~g~--~---~~s---~~e~~~~aDvIi 129 (341)
|+++|.|+|+ |.+|+.+++.|++.|+ +|++.+|++. +.+. +.. .++ . ..+ ..++++.+|+||
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~l~R~~~~~~~~~~~l~~-~~v~~v~~Dl~d~~~l~~a~~~~d~vi 84 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGH----PTYVFTRPNSSKTTLLDEFQS-LGAIIVKGELDEHEKLVELMKKVDVVI 84 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTC----CEEEEECTTCSCHHHHHHHHH-TTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCCC----cEEEEECCCCchhhHHHHhhc-CCCEEEEecCCCHHHHHHHHcCCCEEE
Confidence 6668999996 9999999999999984 8999999864 3222 222 233 1 122 345677899999
Q ss_pred EeeChH---HHHHHHHHh
Q psy316 130 LAMKPQ---YLDSAIQGL 144 (341)
Q Consensus 130 laV~~~---~v~~vl~~i 144 (341)
.+.... ....+++..
T Consensus 85 ~~a~~~~~~~~~~l~~aa 102 (318)
T 2r6j_A 85 SALAFPQILDQFKILEAI 102 (318)
T ss_dssp ECCCGGGSTTHHHHHHHH
T ss_pred ECCchhhhHHHHHHHHHH
Confidence 988643 234455443
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.043 Score=52.48 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=55.9
Q ss_pred CCeEEEEcc-cHHHHHHHH-HHHhcCCCCCCeEE-EEcCChhh-hhhcCcCCCccccC--hHHHhhcCCEEEEeeChHHH
Q psy316 64 WTKVGFIGA-GNMAQAVAT-SLIRTGLCIPAQII-ASAPSERF-KLHWPEPMDFALND--NHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~-~L~~~G~~~~~~V~-v~~r~~e~-~~~l~~~~g~~~~s--~~e~~~~aDvIilaV~~~~v 137 (341)
++||||||+ |..|.-|.+ -|.++.+ +..++. +..++..+ ...+..+ ...+.+ ..+.+.++|+||+|+|...-
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~-~~~~l~~~ss~~aG~~~~~~~~~-~~~v~~~~~~~~~~~vDvvf~a~~~~~s 81 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDF-DLIEPVFFSTSNAGGKAPSFAKN-ETTLKDATSIDDLKKCDVIITCQGGDYT 81 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGG-GGSEEEEEESSCTTSBCCTTCCS-CCBCEETTCHHHHHTCSEEEECSCHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCC-CceEEEEEechhcCCCHHHcCCC-ceEEEeCCChhHhcCCCEEEECCChHHH
Confidence 578999997 999999999 5555432 223554 44443211 1223221 121111 12346789999999999887
Q ss_pred HHHHHHhhhcccccCCC--cEEEEecCC
Q psy316 138 DSAIQGLVNDKVTLNSS--RCIISMLVG 163 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~--~iIVs~~ag 163 (341)
.+....+ . ..+ ++||+..+.
T Consensus 82 ~~~~~~~-~-----~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 82 NDVFPKL-R-----AAGWNGYWIDAASS 103 (377)
T ss_dssp HHHHHHH-H-----HTTCCSEEEECSST
T ss_pred HHHHHHH-H-----HCCCCEEEEeCCcc
Confidence 7777665 2 234 488988653
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.032 Score=56.45 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=31.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..||.|||+|.+|+.+++.|..+|. .+|+++|.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGV---G~ItLvD~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFVDNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---CEEEEECCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCC
Confidence 4689999999999999999999996 6899999854
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.018 Score=52.26 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=48.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh--hhcCcCCCc--c---ccC---hHHHhhcCCEEEEe
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFK--LHWPEPMDF--A---LND---NHRIIKEAEYVFLA 131 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~--~~l~~~~g~--~---~~s---~~e~~~~aDvIila 131 (341)
++|+|.|.|+ |.+|+.+++.|++.|. ++|++.+|++++. +.+.. .++ . ..+ ..++++.+|+||.+
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~---~~V~~~~R~~~~~~~~~l~~-~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 4 DKKLVVVFGGTGAQGGSVARTLLEDGT---FKVRVVTRNPRKKAAKELRL-QGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCS---SEEEEEESCTTSHHHHHHHH-TTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCC---ceEEEEEcCCCCHHHHHHHH-CCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 3478999988 9999999999999871 3999999987653 22322 233 1 222 34567789999998
Q ss_pred eCh
Q psy316 132 MKP 134 (341)
Q Consensus 132 V~~ 134 (341)
...
T Consensus 80 a~~ 82 (299)
T 2wm3_A 80 TNY 82 (299)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.02 Score=54.09 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=56.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEc-C-ChhhhhhcCcCCCccccC-hHHHhhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASA-P-SERFKLHWPEPMDFALND-NHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~-r-~~e~~~~l~~~~g~~~~s-~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+||+||| .|..|.-|.+.|.++.| +..++.... + +..+.-.+... ...+.+ ..+.+.++|+||+|+|...-.+.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~f-p~~el~~~~s~~~aG~~~~~~~~-~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~ 79 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDF-PASAVRFFASARSQGRKLAFRGQ-EIEVEDAETADPSGLDIALFSAGSAMSKVQ 79 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEEEECTTTSSCEEEETTE-EEEEEETTTSCCTTCSEEEECSCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CceEEEEEECcccCCCceeecCC-ceEEEeCCHHHhccCCEEEECCChHHHHHH
Confidence 6899999 59999999998888753 333455443 2 21111112110 111111 12335789999999999887777
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
...+ + ..+..||++++.
T Consensus 80 a~~~----~--~~G~~vID~Sa~ 96 (344)
T 3tz6_A 80 APRF----A--AAGVTVIDNSSA 96 (344)
T ss_dssp HHHH----H--HTTCEEEECSST
T ss_pred HHHH----H--hCCCEEEECCCc
Confidence 7665 3 467789988664
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.019 Score=54.18 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhc
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRT 86 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~ 86 (341)
|++||||+|+|++|+.+.+.|.++
T Consensus 1 M~ikVgI~G~G~IGr~v~r~l~~~ 24 (339)
T 3b1j_A 1 MTIRVAINGFGRIGRNFLRCWFGR 24 (339)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCHHHHHHHHHHHhc
Confidence 557999999999999999999886
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.052 Score=51.79 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=55.2
Q ss_pred CeEEEEcc-cHHHHHHHH-HHHhcCCCCCCeEE-EEcCChhh-hhhcCcCCCccccC--hHHHhhcCCEEEEeeChHHHH
Q psy316 65 TKVGFIGA-GNMAQAVAT-SLIRTGLCIPAQII-ASAPSERF-KLHWPEPMDFALND--NHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~-~L~~~G~~~~~~V~-v~~r~~e~-~~~l~~~~g~~~~s--~~e~~~~aDvIilaV~~~~v~ 138 (341)
|||||||+ |..|.-|.+ -|.++.+ +..++. +..|+..+ ...+... ...+.+ ..+.+.++|+||+|+|...-.
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~-~~~~l~~~ss~~aG~~~~~~~~~-~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~ 78 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDF-DLIEPVFFSTSQIGVPAPNFGKD-AGMLHDAFDIESLKQLDAVITCQGGSYTE 78 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGG-GGSEEEEEESSSTTSBCCCSSSC-CCBCEETTCHHHHTTCSEEEECSCHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCC-CceEEEEEeccccCcCHHHhCCC-ceEEEecCChhHhccCCEEEECCChHHHH
Confidence 58999997 999999999 5555432 223544 44554211 1223221 121211 123467899999999998877
Q ss_pred HHHHHhhhcccccCCC--cEEEEecCC
Q psy316 139 SAIQGLVNDKVTLNSS--RCIISMLVG 163 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~--~iIVs~~ag 163 (341)
+....+ . ..+ .+||+..+.
T Consensus 79 ~~~~~~-~-----~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 79 KVYPAL-R-----QAGWKGYWIDAAST 99 (370)
T ss_dssp HHHHHH-H-----HTTCCCEEEECSST
T ss_pred HHHHHH-H-----HCCCCEEEEeCCch
Confidence 777665 2 234 488988653
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.013 Score=53.64 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=36.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
.+++.|+| +|-+|.+++..|.+.|. +|++++|++++++.+.+
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~G~----~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGEGA----EVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC----EEEEEECCHHHHHHHHH
Confidence 36788999 89999999999999995 79999999888776654
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.022 Score=54.01 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=53.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEc-C-Chhhhhh---cCcCC-----------------C--c-cc--
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASA-P-SERFKLH---WPEPM-----------------D--F-AL-- 115 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~-r-~~e~~~~---l~~~~-----------------g--~-~~-- 115 (341)
++||||+|+|.+|..+.+.|.++. .-+|. +.+ + +.+.+.. ...-+ | + ..
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~p---~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 93 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMERN---DITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQA 93 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCS---SCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECC
T ss_pred ceEEEEECCCHHHHHHHHHHHcCC---CeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEec
Confidence 469999999999999999998763 13554 444 3 3331111 11111 1 1 11
Q ss_pred cChHHH-h--hcCCEEEEeeChHHHHHHHHHhhhcccccCCCc--EEEEecC
Q psy316 116 NDNHRI-I--KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSR--CIISMLV 162 (341)
Q Consensus 116 ~s~~e~-~--~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~--iIVs~~a 162 (341)
.++.++ . ..+|+||.|++...-.+..... + ..|. +|||..+
T Consensus 94 ~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~----l--~~GakkvVId~pa 139 (354)
T 3cps_A 94 KDPAEIPWGASGAQIVCESTGVFTTEEKASLH----L--KGGAKKVIISAPP 139 (354)
T ss_dssp SCGGGCCHHHHTCCEEEECSSSCCSHHHHGGG----G--TTTCSEEEESSCC
T ss_pred CChHHCCcccCCCCEEEECCCchhhHHHHHHH----H--HcCCcEEEEeCCC
Confidence 144443 1 4799999999977655555443 4 4444 8888744
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.091 Score=46.14 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=52.8
Q ss_pred CCCe-EEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee-----ChH
Q psy316 63 MWTK-VGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM-----KPQ 135 (341)
Q Consensus 63 m~~k-IgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV-----~~~ 135 (341)
|..| +.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ .....+.++.+ .+.
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~-~~~~~~~~~~~d~d~~~~~ 79 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHGA----SVVLLGRTEASLAEVSDQI-------KS-AGQPQPLIIALNLENATAQ 79 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH-TTSCCCEEEECCTTTCCHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEEecCHHHHHHHHHHH-------Hh-cCCCCceEEEeccccCCHH
Confidence 4444 555555 9999999999999994 8999999988877654421 00 01112222222 345
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+..+++++ ...+ .+=.++|++++
T Consensus 80 ~~~~~~~~~-~~~~--g~id~lv~nAg 103 (247)
T 3i1j_A 80 QYRELAARV-EHEF--GRLDGLLHNAS 103 (247)
T ss_dssp HHHHHHHHH-HHHH--SCCSEEEECCC
T ss_pred HHHHHHHHH-HHhC--CCCCEEEECCc
Confidence 677777766 5444 33347787754
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.069 Score=47.78 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=53.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.| .|.+|.++++.|++.|. +|++.+|++++++.+.++ ..+.....++.++.+ .+..+.++
T Consensus 14 k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v~~~ 82 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLAAEGA----KLSLVDVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEAY 82 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHH-------HHhhcCCceEEEEEccCCCHHHHHHH
Confidence 4455555 58999999999999994 999999998776654332 111111234555443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 83 ~~~~-~~~~--g~id~lv~nAg 101 (267)
T 1iy8_A 83 VTAT-TERF--GRIDGFFNNAG 101 (267)
T ss_dssp HHHH-HHHH--SCCSEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7766 4444 33347777654
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.069 Score=48.17 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=56.2
Q ss_pred CCCcCCCCCCCCcccCCCCCCCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHH
Q psy316 44 RPVRKSDMGMEDSVEHHVPMWTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRI 121 (341)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~m~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~ 121 (341)
.|..++.|...+. +.|..|+.+| | .|-+|.++++.|++.|. +|++.+|++++++.+.+++ .+
T Consensus 9 ~~~~~~~m~~~~~----~~l~gk~~lVTGas~gIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~l-------~~- 72 (271)
T 4ibo_A 9 GLVPRGSMSNQII----FDLGGRTALVTGSSRGLGRAMAEGLAVAGA----RILINGTDPSRVAQTVQEF-------RN- 72 (271)
T ss_dssp ---------CCGG----GCCTTCEEEETTCSSHHHHHHHHHHHHTTC----EEEECCSCHHHHHHHHHHH-------HH-
T ss_pred CCCCcccCccccc----cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh-
Confidence 4455555554432 2354455555 4 58999999999999994 9999999988776654421 00
Q ss_pred hhcCCEEEEee---ChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 122 IKEAEYVFLAM---KPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 122 ~~~aDvIilaV---~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
...++.++.+ .+..+.++++++ ...+ .+=.++|++++
T Consensus 73 -~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~--g~iD~lv~nAg 112 (271)
T 4ibo_A 73 -VGHDAEAVAFDVTSESEIIEAFARL-DEQG--IDVDILVNNAG 112 (271)
T ss_dssp -TTCCEEECCCCTTCHHHHHHHHHHH-HHHT--CCCCEEEECCC
T ss_pred -cCCceEEEEcCCCCHHHHHHHHHHH-HHHC--CCCCEEEECCC
Confidence 1223444433 356677777776 5444 33347787644
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.048 Score=54.57 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=51.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccCh--HHH-----hhcCCEEEEeeC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDN--HRI-----IKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~--~e~-----~~~aDvIilaV~ 133 (341)
++++|.|+|+|.+|..+++.|.+.|+ ++++.+.++++.+.+.+++++ ...|. .+. +.++|.+|+ +.
T Consensus 126 ~~~hviI~G~g~~g~~la~~L~~~~~----~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~ 200 (565)
T 4gx0_A 126 TRGHILIFGIDPITRTLIRKLESRNH----LFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NL 200 (565)
T ss_dssp CCSCEEEESCCHHHHHHHHHTTTTTC----CEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CS
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC----CEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eC
Confidence 56789999999999999999998884 899999999998888774454 22221 222 468999987 44
Q ss_pred hH
Q psy316 134 PQ 135 (341)
Q Consensus 134 ~~ 135 (341)
.+
T Consensus 201 ~D 202 (565)
T 4gx0_A 201 SD 202 (565)
T ss_dssp CH
T ss_pred Cc
Confidence 43
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.032 Score=50.65 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=47.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCCh------hhhhh---cCcCCCc--c---ccC---hHHHhhcC
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSE------RFKLH---WPEPMDF--A---LND---NHRIIKEA 125 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~------e~~~~---l~~~~g~--~---~~s---~~e~~~~a 125 (341)
+++|.|+|+ |.+|+.+++.|++.|+ +|++..|++ ++.+. +.. .|+ . ..+ ..++++.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~l~R~~~~~~~~~~~~~~~~l~~-~~v~~v~~D~~d~~~l~~~~~~~ 78 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH----PTFLLVRESTASSNSEKAQLLESFKA-SGANIVHGSIDDHASLVEAVKNV 78 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEECCCCCTTTTHHHHHHHHHHHT-TTCEEECCCTTCHHHHHHHHHTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC----CEEEEECCcccccCHHHHHHHHHHHh-CCCEEEEeccCCHHHHHHHHcCC
Confidence 368999997 9999999999999984 899999973 33322 222 243 1 122 34567789
Q ss_pred CEEEEeeCh
Q psy316 126 EYVFLAMKP 134 (341)
Q Consensus 126 DvIilaV~~ 134 (341)
|+||.+...
T Consensus 79 d~vi~~a~~ 87 (308)
T 1qyc_A 79 DVVISTVGS 87 (308)
T ss_dssp SEEEECCCG
T ss_pred CEEEECCcc
Confidence 999998864
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.015 Score=55.68 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhc
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRT 86 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~ 86 (341)
|++||||+|+|++|..+++.|.++
T Consensus 1 M~ikVgInGfGrIGr~vlR~l~~~ 24 (380)
T 2d2i_A 1 MTIRVAINGFGRIGRNFLRCWFGR 24 (380)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHC
T ss_pred CCcEEEEECcCHHHHHHHHHHhcC
Confidence 557999999999999999999876
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.027 Score=51.68 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=54.4
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.+++.|||.|+ .|..++..|...|. +|+++.+.. .++.+.+++||+||.+++...+ +.
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~gA----tVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~~---I~ 219 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLGGC----TVTVTHRFT--------------RDLADHVSRADLVVVAAGKPGL---VK 219 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHTTC----EEEEECTTC--------------SCHHHHHHTCSEEEECCCCTTC---BC
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCC----eEEEEeCCC--------------cCHHHHhccCCEEEECCCCCCC---CC
Confidence 47899999877 79999999999884 899987631 2467788999999999974221 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 220 ---~~~v--k~GavVIDv 232 (286)
T 4a5o_A 220 ---GEWI--KEGAIVIDV 232 (286)
T ss_dssp ---GGGS--CTTCEEEEC
T ss_pred ---HHHc--CCCeEEEEe
Confidence 3346 788888876
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.088 Score=47.12 Aligned_cols=86 Identities=8% Similarity=0.049 Sum_probs=55.2
Q ss_pred CCCeE-EEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKV-GFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kI-giIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+..|+ .|.| .|-+|.++++.|++.|. +|++.+|++++++.+.+++ .+......+.++.+ .+..+
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dv~~~~~v 74 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA----AVAFCARDGERLRAAESAL-------RQRFPGARLFASVCDVLDALQV 74 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HHHSTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HHhcCCceEEEEeCCCCCHHHH
Confidence 44444 4555 58999999999999995 8999999988876654421 11111223555544 35677
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+++++ ...+ .+=.++|+.++
T Consensus 75 ~~~~~~~-~~~~--g~id~lvnnAg 96 (265)
T 3lf2_A 75 RAFAEAC-ERTL--GCASILVNNAG 96 (265)
T ss_dssp HHHHHHH-HHHH--CSCSEEEECCC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7777776 5544 33357887754
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.021 Score=53.14 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=51.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCCh----hhhhh---cCcCCCc--c---cc---ChHHHhh--cCC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSE----RFKLH---WPEPMDF--A---LN---DNHRIIK--EAE 126 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~----e~~~~---l~~~~g~--~---~~---s~~e~~~--~aD 126 (341)
|+|.|+|+ |.+|+.+++.|++.|+ +|++..|++ ++.+. +.. .++ . .. +..++++ .+|
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~----~V~~l~R~~~~~~~~~~~~~~l~~-~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHR----PTYILARPGPRSPSKAKIFKALED-KGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTC----CEEEEECSSCCCHHHHHHHHHHHH-TTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCC----CEEEEECCCCCChhHHHHHHHHHh-CCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 68999998 9999999999999984 899999976 34332 222 133 1 12 2345667 899
Q ss_pred EEEEeeChH---HHHHHHHHh
Q psy316 127 YVFLAMKPQ---YLDSAIQGL 144 (341)
Q Consensus 127 vIilaV~~~---~v~~vl~~i 144 (341)
+||.+.... ....+++..
T Consensus 86 ~Vi~~a~~~n~~~~~~l~~aa 106 (346)
T 3i6i_A 86 IVVSTVGGESILDQIALVKAM 106 (346)
T ss_dssp EEEECCCGGGGGGHHHHHHHH
T ss_pred EEEECCchhhHHHHHHHHHHH
Confidence 999988653 334555444
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.034 Score=51.00 Aligned_cols=67 Identities=25% Similarity=0.217 Sum_probs=46.9
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------CCc--c-------ccChHHHhhcC
Q psy316 62 PMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------MDF--A-------LNDNHRIIKEA 125 (341)
Q Consensus 62 ~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------~g~--~-------~~s~~e~~~~a 125 (341)
...++|.|.|+ |-+|+.+++.|++.|+ +|++.+|++++.+.+.+. .++ . ..+..++++.+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 84 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGY----KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC----EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCC
Confidence 34578999987 9999999999999984 999999987765433210 011 1 12233455678
Q ss_pred CEEEEee
Q psy316 126 EYVFLAM 132 (341)
Q Consensus 126 DvIilaV 132 (341)
|+||-+.
T Consensus 85 d~vih~A 91 (342)
T 1y1p_A 85 AGVAHIA 91 (342)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999775
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.071 Score=46.94 Aligned_cols=78 Identities=10% Similarity=0.064 Sum_probs=52.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHHH
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSAI 141 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~vl 141 (341)
++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.+++ . ..+.++.+ .+..++.++
T Consensus 5 ~vlVTGas~GIG~a~a~~l~~~G~----~V~~~~r~~~~~~~~~~~~-----------~-~~~~~~~~D~~~~~~v~~~~ 68 (235)
T 3l6e_A 5 HIIVTGAGSGLGRALTIGLVERGH----QVSMMGRRYQRLQQQELLL-----------G-NAVIGIVADLAHHEDVDVAF 68 (235)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-----------G-GGEEEEECCTTSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHh-----------c-CCceEEECCCCCHHHHHHHH
Confidence 4556665 8999999999999994 9999999988877654421 1 12444443 356677777
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++ ...+ .+=.++|+.++
T Consensus 69 ~~~-~~~~--g~id~lvnnAg 86 (235)
T 3l6e_A 69 AAA-VEWG--GLPELVLHCAG 86 (235)
T ss_dssp HHH-HHHH--CSCSEEEEECC
T ss_pred HHH-HHhc--CCCcEEEECCC
Confidence 776 5444 33357787644
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.093 Score=47.11 Aligned_cols=83 Identities=7% Similarity=0.104 Sum_probs=52.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.| .|.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....++.++.+ .+..+..+
T Consensus 22 k~~lVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~-~~~~~~~~~~~Dl~~~~~v~~~ 89 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLAEAGC----SVVVASRNLEEASEAAQKL-------TE-KYGVETMAFRCDVSNYEEVKKL 89 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH-HHCCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HH-hcCCeEEEEEcCCCCHHHHHHH
Confidence 4455665 48999999999999994 8999999987766543311 00 01234444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 90 ~~~~-~~~~--g~iD~lvnnAg 108 (267)
T 1vl8_A 90 LEAV-KEKF--GKLDTVVNAAG 108 (267)
T ss_dssp HHHH-HHHH--SCCCEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7766 4444 33347777644
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.026 Score=52.11 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..||.|||+|.+|+.++..|..+|. .+|+++|.+.
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGV---G~i~lvD~D~ 70 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGI---GKLLLFDYDK 70 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTC---SEEEEECCCB
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCC---CEEEEECCCc
Confidence 4689999999999999999999996 6899999864
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.13 Score=45.76 Aligned_cols=85 Identities=12% Similarity=0.182 Sum_probs=55.4
Q ss_pred CCCCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHH
Q psy316 62 PMWTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQY 136 (341)
Q Consensus 62 ~m~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~ 136 (341)
.+..|+.+| | .|-+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dv~d~~~ 75 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGA----SVVVTDLKSEGAEAVAAAI-------RQ--AGGKAIGLECNVTDEQH 75 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTC----EEEEEESSHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEECCCCCHHH
Confidence 344455555 4 58999999999999995 8999999988776654421 10 1234555544 3566
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++++++ ...+ .+=.++|+.++
T Consensus 76 v~~~~~~~-~~~~--g~id~lv~nAg 98 (256)
T 3gaf_A 76 REAVIKAA-LDQF--GKITVLVNNAG 98 (256)
T ss_dssp HHHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHHH-HHHc--CCCCEEEECCC
Confidence 77777776 5444 33357787654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.17 Score=44.59 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=53.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....+.++.+ .+..+.++
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~~ 76 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGA----AVVVADINAEAAEAVAKQI-------VA--DGGTAISVAVDVSDPESAKAM 76 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCEEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHHHH
Confidence 34556665 8999999999999994 8999999988877654421 11 1233444444 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 77 ~~~~-~~~~--g~id~li~~Ag 95 (253)
T 3qiv_A 77 ADRT-LAEF--GGIDYLVNNAA 95 (253)
T ss_dssp HHHH-HHHH--SCCCEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7776 5444 33347777643
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.034 Score=50.53 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=46.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCC-----hhhhhhc---CcCCCc--c---ccC---hHHHhhcCC
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPS-----ERFKLHW---PEPMDF--A---LND---NHRIIKEAE 126 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~-----~e~~~~l---~~~~g~--~---~~s---~~e~~~~aD 126 (341)
+|+|.|+|+ |.+|+.+++.|++.|+ +|++.+|+ +++.+.+ .. .++ . ..+ ..++++.+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~l~~~~~~~d 78 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH----PTYVLFRPEVVSNIDKVQMLLYFKQ-LGAKLIEASLDDHQRLVDALKQVD 78 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEECCSCCSSCHHHHHHHHHHHT-TTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC----cEEEEECCCcccchhHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHhCCC
Confidence 468999985 9999999999999984 89999998 4444322 12 233 1 222 345677899
Q ss_pred EEEEeeC
Q psy316 127 YVFLAMK 133 (341)
Q Consensus 127 vIilaV~ 133 (341)
+||.+..
T Consensus 79 ~vi~~a~ 85 (313)
T 1qyd_A 79 VVISALA 85 (313)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9998874
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.057 Score=51.74 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=64.1
Q ss_pred CeEEEEcccHHHHHHHHH-HHhcCCCCCCeEEEEcCChhhhhhcCcC--C---------------Cc-ccc-C---hHHH
Q psy316 65 TKVGFIGAGNMAQAVATS-LIRTGLCIPAQIIASAPSERFKLHWPEP--M---------------DF-ALN-D---NHRI 121 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~-L~~~G~~~~~~V~v~~r~~e~~~~l~~~--~---------------g~-~~~-s---~~e~ 121 (341)
||+..+|+||+|.++... |.++| ++|++.++++...+.|+++ | ++ ... . ..+.
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g----~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~ 76 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAG----IQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDL 76 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTT----CEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHH
T ss_pred CcEEEECCCccchhhHHHHHHHcC----CeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHH
Confidence 689999999999776665 45677 5999999998877777643 1 12 111 1 2235
Q ss_pred hhcCCEEEEeeChHHHHHHHHHhhhcccc-----cC-CCcEEEEecCCCC
Q psy316 122 IKEAEYVFLAMKPQYLDSAIQGLVNDKVT-----LN-SSRCIISMLVGVD 165 (341)
Q Consensus 122 ~~~aDvIilaV~~~~v~~vl~~i~~~~l~-----~~-~~~iIVs~~agi~ 165 (341)
+.++|+|..++.|+.+..+...+ ...|. .. +.-.|++|-+-..
T Consensus 77 i~~adlitT~vG~~~l~~i~~~l-~~~L~~R~~~~~~~pltilsCeN~~~ 125 (382)
T 3h2z_A 77 IAQVDLVTTAVGPVVLERIAPAI-AKGLVKRKEQGNESPLNIIACENMVR 125 (382)
T ss_dssp HTTCSEEEECCCHHHHHHTHHHH-HHHHHHHHHHTCCSCEEEEECCSSTT
T ss_pred HcCCCEEEECCCcccHHHHHHHH-HHHHHHHHHcCCCCCcEEEECCCccc
Confidence 67899999999988776655443 32221 01 3446899887665
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.13 Score=45.71 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=52.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhh-cCCEEEEe---eChHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK-EAEYVFLA---MKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~-~aDvIila---V~~~~v~~ 139 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.+++ .+.-. .+.++..- ..+..+.+
T Consensus 13 k~vlVTGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~ 81 (252)
T 3f1l_A 13 RIILVTGASDGIGREAAMTYARYGA----TVILLGRNEEKLRQVASHI-------NEETGRQPQWFILDLLTCTSENCQQ 81 (252)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HHHHSCCCEEEECCTTTCCHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HhhcCCCceEEEEecccCCHHHHHH
Confidence 34555555 8999999999999994 8999999988877654421 11111 22222222 23456777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|+.++
T Consensus 82 ~~~~~-~~~~--g~id~lv~nAg 101 (252)
T 3f1l_A 82 LAQRI-AVNY--PRLDGVLHNAG 101 (252)
T ss_dssp HHHHH-HHHC--SCCSEEEECCC
T ss_pred HHHHH-HHhC--CCCCEEEECCc
Confidence 77776 5444 33357787654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.033 Score=52.32 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=46.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh--hhcCcCCCc--c----ccC---hHHHhhcCCEEEEe
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFK--LHWPEPMDF--A----LND---NHRIIKEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~--~~l~~~~g~--~----~~s---~~e~~~~aDvIila 131 (341)
.|+|.|.|+ |.+|+.+++.|++.|+ +|++.+|++++. +.+.+..++ . ..+ ..++++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGH----HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTC----CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC----EEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 578999985 9999999999999884 899999987553 333321122 1 223 34456789999977
Q ss_pred eC
Q psy316 132 MK 133 (341)
Q Consensus 132 V~ 133 (341)
..
T Consensus 81 a~ 82 (352)
T 1xgk_A 81 TT 82 (352)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.057 Score=54.54 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..||.|||+|.+|+.+++.|..+|. .+|+++|.+
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~aGV---G~ItLvD~D 360 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAWGV---RKITFVDNG 360 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC---CEEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEECCC
Confidence 4689999999999999999999996 689999765
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.024 Score=51.99 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=51.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCCh------hhhhhc---CcCCCc--c---ccC---hHHHhhc
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSE------RFKLHW---PEPMDF--A---LND---NHRIIKE 124 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~------e~~~~l---~~~~g~--~---~~s---~~e~~~~ 124 (341)
|+|+|.|+|+ |.+|+++++.|++.|+ +|++.+|++ ++.+.+ .. .++ . ..+ ..++++.
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~~R~~~~~~~~~~~~~l~~~~~-~~v~~v~~D~~d~~~l~~a~~~ 77 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSH----PTFIYARPLTPDSTPSSVQLREEFRS-MGVTIIEGEMEEHEKMVSVLKQ 77 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTC----CEEEEECCCCTTCCHHHHHHHHHHHH-TTCEEEECCTTCHHHHHHHHTT
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCC----cEEEEECCcccccChHHHHHHHHhhc-CCcEEEEecCCCHHHHHHHHcC
Confidence 4578999996 9999999999999984 899999975 333322 12 133 1 122 3456778
Q ss_pred CCEEEEeeChH---HHHHHHHHh
Q psy316 125 AEYVFLAMKPQ---YLDSAIQGL 144 (341)
Q Consensus 125 aDvIilaV~~~---~v~~vl~~i 144 (341)
+|+||.+.... ....+++..
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa 100 (321)
T 3c1o_A 78 VDIVISALPFPMISSQIHIINAI 100 (321)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHH
T ss_pred CCEEEECCCccchhhHHHHHHHH
Confidence 99999988642 334455443
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.037 Score=50.47 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=38.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhc--CCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKE--AEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~--aDvIilaV 132 (341)
|.|+|.|.|+ |.+|+.+++.|++.|+ +|++.+|++.... +.. ..+ ...+..++++. +|+||-+.
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~-~~~-~Dl~d~~~~~~~~~~~~~d~vih~A 68 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNW----HAVGCGFRRARPK-FEQ-VNLLDSNAVHHIIHDFQPHVIVHCA 68 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTC----EEEEEC--------------------CHHHHHHHCCSEEEECC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCC----eEEEEccCCCCCC-eEE-ecCCCHHHHHHHHHhhCCCEEEECC
Confidence 5689999987 9999999999999984 9999998754311 110 011 12234455554 89999775
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.12 Score=46.45 Aligned_cols=79 Identities=10% Similarity=0.165 Sum_probs=54.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.+++-|-| .+-+|.++++.|++.|. +|.+++|++++++.+.++.+ ++..+.+ .+.+++
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~Ga----~V~~~~~~~~~~~~~~~~~~-------------~~~~~~~Dv~~~~~v~ 63 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGD----KVCFIDIDEKRSADFAKERP-------------NLFYFHGDVADPLTLK 63 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHTTCT-------------TEEEEECCTTSHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHhcC-------------CEEEEEecCCCHHHHH
Confidence 666666666 47899999999999995 99999999988877665421 2222322 456777
Q ss_pred HHHHHhhhcccccCCCcEEEEec
Q psy316 139 SAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
++++++ ...+ .+=.++|+.+
T Consensus 64 ~~v~~~-~~~~--g~iDiLVNNA 83 (247)
T 3ged_A 64 KFVEYA-MEKL--QRIDVLVNNA 83 (247)
T ss_dssp HHHHHH-HHHH--SCCCEEEECC
T ss_pred HHHHHH-HHHc--CCCCEEEECC
Confidence 777776 5444 3334778764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.23 Score=45.11 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=49.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh-hhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFK-LHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~-~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|+.+.. +.+.+. .. ....++.++.+ .+..+++
T Consensus 48 k~vlVTGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~~Dv~d~~~v~~ 114 (291)
T 3ijr_A 48 KNVLITGGDSGIGRAVSIAFAKEGA----NIAIAYLDEEGDANETKQY-------VE--KEGVKCVLLPGDLSDEQHCKD 114 (291)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHH-------HH--TTTCCEEEEESCTTSHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCchHHHHHHHHH-------HH--hcCCcEEEEECCCCCHHHHHH
Confidence 34555554 8999999999999995 899999876532 222110 00 01234555544 3566777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|++++
T Consensus 115 ~~~~~-~~~~--g~iD~lvnnAg 134 (291)
T 3ijr_A 115 IVQET-VRQL--GSLNILVNNVA 134 (291)
T ss_dssp HHHHH-HHHH--SSCCEEEECCC
T ss_pred HHHHH-HHHc--CCCCEEEECCC
Confidence 77776 4444 33357787754
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.023 Score=48.63 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=30.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
|...|.|||+|.-|.+.|..|.++|+ +|+++++++
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~----~V~v~Ek~~ 35 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGH----QVHLFDKSR 35 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC----CEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC----CEEEEECCC
Confidence 55679999999999999999999995 999999864
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.021 Score=55.77 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=49.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh----hhhhcCcCCCc-c-c-cChHHHhhc-CCEEEEe--eC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER----FKLHWPEPMDF-A-L-NDNHRIIKE-AEYVFLA--MK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e----~~~~l~~~~g~-~-~-~s~~e~~~~-aDvIila--V~ 133 (341)
.+||.|||.|..|.+.|+.|.+.|+ +|+++|+++. ..+.|.+ .|+ . . .+..+.+.. +|+||++ +|
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~----~V~~~D~~~~~~~~~~~~L~~-~gi~~~~g~~~~~~~~~~~d~vv~spgi~ 83 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGA----IVTVNDGKPFDENPTAQSLLE-EGIKVVCGSHPLELLDEDFCYMIKNPGIP 83 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTC----EEEEEESSCGGGCHHHHHHHH-TTCEEEESCCCGGGGGSCEEEEEECTTSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC----EEEEEeCCcccCChHHHHHHh-CCCEEEECCChHHhhcCCCCEEEECCcCC
Confidence 4789999999999999999999994 9999998542 3345555 476 2 2 233445566 8999987 45
Q ss_pred hH
Q psy316 134 PQ 135 (341)
Q Consensus 134 ~~ 135 (341)
++
T Consensus 84 ~~ 85 (451)
T 3lk7_A 84 YN 85 (451)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.052 Score=53.27 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c--ccc---Ch----HHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F--ALN---DN----HRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~--~~~---s~----~e~~~~aDvIilaV~ 133 (341)
.++|-|+|.|++|..+|+.|.+ + ++|.+.++++++++.+++++. . ... +. ++-+.++|+++-++.
T Consensus 235 ~~~v~I~GgG~ig~~lA~~L~~-~----~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~ 309 (461)
T 4g65_A 235 YRRIMIVGGGNIGASLAKRLEQ-T----YSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALTN 309 (461)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-T----SEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECCS
T ss_pred ccEEEEEcchHHHHHHHHHhhh-c----CceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEccc
Confidence 3689999999999999998743 3 489999999999998887653 2 212 21 123578999999998
Q ss_pred hHHH
Q psy316 134 PQYL 137 (341)
Q Consensus 134 ~~~v 137 (341)
.+..
T Consensus 310 ~De~ 313 (461)
T 4g65_A 310 EDET 313 (461)
T ss_dssp CHHH
T ss_pred CcHH
Confidence 7653
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.16 Score=45.76 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=55.9
Q ss_pred CCCeEE-EEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHh--hcCCEEEEee---ChH
Q psy316 63 MWTKVG-FIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRII--KEAEYVFLAM---KPQ 135 (341)
Q Consensus 63 m~~kIg-iIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~--~~aDvIilaV---~~~ 135 (341)
|..|+. |.| .|-+|.++++.|.+.|. +|++.+|+.++.+.+.++.. ...+.+ ....+.++.+ .+.
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Dv~~~~ 75 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGA----NVAIAAKSAVANPKLPGTIH----SAAAAVNAAGGQGLALKCDIREED 75 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCCSCCTTSCCCHH----HHHHHHHHHTSEEEEEECCTTCHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC----EEEEEeccchhhhhhHHHHH----HHHHHHHhcCCeEEEEeCCCCCHH
Confidence 444444 555 48999999999999994 89999999876665544210 011111 1345555555 356
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+..+++++ ...+ .+=.++|++++
T Consensus 76 ~v~~~~~~~-~~~~--g~iD~lvnnAG 99 (274)
T 3e03_A 76 QVRAAVAAT-VDTF--GGIDILVNNAS 99 (274)
T ss_dssp HHHHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHHHH-HHHc--CCCCEEEECCC
Confidence 777888777 5544 33357887754
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.3 Score=43.92 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=54.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|+.++.+...+++ .+ .....+.++.+ .+..++.+
T Consensus 28 k~~lVTGas~GIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~-~~~~~~~~~~~Dv~~~~~v~~~ 95 (277)
T 4fc7_A 28 KVAFITGGGSGIGFRIAEIFMRHGC----HTVIASRSLPRVLTAARKL-------AG-ATGRRCLPLSMDVRAPPAVMAA 95 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC----EEEEEESCHHHHHHHHHHH-------HH-HHSSCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HH-hcCCcEEEEEcCCCCHHHHHHH
Confidence 34555555 7899999999999994 9999999987766544321 11 11334555554 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 96 ~~~~-~~~~--g~id~lv~nAg 114 (277)
T 4fc7_A 96 VDQA-LKEF--GRIDILINCAA 114 (277)
T ss_dssp HHHH-HHHH--SCCCEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCc
Confidence 7776 5444 33357887754
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.032 Score=50.73 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=31.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|+|+|.|.|+ |.+|+.+++.|++.|+ +|++.+|++.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGE----EVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC----CEEEECCCSS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCC----EEEEEecCCc
Confidence 5689999988 9999999999999984 9999999765
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.03 Score=52.44 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=57.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChH-HHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQ-YLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~-~v~~v 140 (341)
..+|.|+|+|.+|...++.+...|. +|++.++++++++.+++ +|. ...+..++.+..|+||-++... .+...
T Consensus 177 g~~VlV~GaG~vG~~a~qla~~~Ga----~Vi~~~~~~~~~~~~~~-lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~ 251 (348)
T 3two_A 177 GTKVGVAGFGGLGSMAVKYAVAMGA----EVSVFARNEHKKQDALS-MGVKHFYTDPKQCKEELDFIISTIPTHYDLKDY 251 (348)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTC----EEEEECSSSTTHHHHHH-TTCSEEESSGGGCCSCEEEEEECCCSCCCHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHh-cCCCeecCCHHHHhcCCCEEEECCCcHHHHHHH
Confidence 4689999999999999888877884 89999999998887766 787 3333333333689999999755 66666
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
++-+
T Consensus 252 ~~~l 255 (348)
T 3two_A 252 LKLL 255 (348)
T ss_dssp HTTE
T ss_pred HHHH
Confidence 5544
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.083 Score=46.02 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.++|.|.|+ |.+|.++++.|++.|+ +|++.+|++++++.+.++++ .+.++.+ .+..+.
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~----~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~D~~~~~~~~ 66 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGY----RVGLMARDEKRLQALAAELE-------------GALPLPGDVREEGDWA 66 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHST-------------TCEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhh-------------hceEEEecCCCHHHHH
Confidence 5566777765 9999999999999994 89999999877665543211 1222221 345666
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++ ...+ .+=.++|++++
T Consensus 67 ~~~~~~-~~~~--~~id~li~~Ag 87 (234)
T 2ehd_A 67 RAVAAM-EEAF--GELSALVNNAG 87 (234)
T ss_dssp HHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHH-HHHc--CCCCEEEECCC
Confidence 677665 4434 33347777654
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.088 Score=47.60 Aligned_cols=84 Identities=8% Similarity=0.117 Sum_probs=54.2
Q ss_pred CC-CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MW-TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~-~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+. +++.|.| .|-+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....+.++.+ .+..+
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~d~~~v 96 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGA----QVAVAARHSDALQVVADEI-------AG--VGGKALPIRCDVTQPDQV 96 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESSGGGGHHHHHHH-------HH--TTCCCEEEECCTTCHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCeEEEEEcCCCCHHHH
Confidence 44 4455555 48999999999999994 9999999987776554421 11 1223444443 35677
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++++ ...+ .+=.++|++++
T Consensus 97 ~~~~~~~-~~~~--g~iD~lvnnAg 118 (276)
T 3r1i_A 97 RGMLDQM-TGEL--GGIDIAVCNAG 118 (276)
T ss_dssp HHHHHHH-HHHH--SCCSEEEECCC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7777776 5444 33357787644
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.031 Score=50.73 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=51.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCCh-------hhhhhc---CcCCCc--c---ccC---hHHHhhc
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSE-------RFKLHW---PEPMDF--A---LND---NHRIIKE 124 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~-------e~~~~l---~~~~g~--~---~~s---~~e~~~~ 124 (341)
+++|.|+|+ |.+|+.+++.|++.|+ +|++.+|++ ++.+.+ .. .++ . ..+ ..++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~~R~~~~~~~~~~~~~~~~~l~~-~~v~~v~~D~~d~~~l~~~~~~ 76 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN----PTYALVRKTITAANPETKEELIDNYQS-LGVILLEGDINDHETLVKAIKQ 76 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC----CEEEEECCSCCSSCHHHHHHHHHHHHH-TTCEEEECCTTCHHHHHHHHTT
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC----cEEEEECCCcccCChHHHHHHHHHHHh-CCCEEEEeCCCCHHHHHHHHhC
Confidence 368999987 9999999999999984 899999986 444322 12 233 1 122 3456778
Q ss_pred CCEEEEeeCh---HHHHHHHHHh
Q psy316 125 AEYVFLAMKP---QYLDSAIQGL 144 (341)
Q Consensus 125 aDvIilaV~~---~~v~~vl~~i 144 (341)
+|+||.+... .....+++..
T Consensus 77 ~d~vi~~a~~~~~~~~~~l~~aa 99 (307)
T 2gas_A 77 VDIVICAAGRLLIEDQVKIIKAI 99 (307)
T ss_dssp CSEEEECSSSSCGGGHHHHHHHH
T ss_pred CCEEEECCcccccccHHHHHHHH
Confidence 9999998753 3334455443
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.034 Score=52.17 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=53.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh-hhcCcC-CCc-c-ccChHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFK-LHWPEP-MDF-A-LNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~-~~l~~~-~g~-~-~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
|||+|+| .|.+|..+.+.|.+.++ +...+.... +.+.. +.+.-. ..+ . ..++.+ + .+|+||.|++...-.+
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~-~~~~l~~~~-s~~~~g~~l~~~g~~i~v~~~~~~~-~-~~DvV~~a~g~~~s~~ 76 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNF-PLSELRLYA-SPRSAGVRLAFRGEEIPVEPLPEGP-L-PVDLVLASAGGGISRA 76 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-CCSCCEEEE-CGGGSSCEEEETTEEEEEEECCSSC-C-CCSEEEECSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEee-ccccCCCEEEEcCceEEEEeCChhh-c-CCCEEEECCCccchHH
Confidence 5899999 89999999999987664 333443332 11111 111100 012 1 112333 4 8999999999877666
Q ss_pred HHHHhhhcccccCCCcEEEEecCC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
....+ + ..+..+|+..+.
T Consensus 77 ~a~~~----~--~~G~~vId~s~~ 94 (331)
T 2yv3_A 77 KALVW----A--EGGALVVDNSSA 94 (331)
T ss_dssp HHHHH----H--HTTCEEEECSSS
T ss_pred HHHHH----H--HCCCEEEECCCc
Confidence 66554 3 457788887654
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.13 Score=46.92 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=54.0
Q ss_pred CCCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+..|+.+| | .|-+|.++++.|++.|. +|++.+|++++++.+.+++.. ....++.++.+ .+..+
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~l~~--------~~~~~~~~~~~Dv~d~~~v 106 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAGA----NVAVAARSPRELSSVTAELGE--------LGAGNVIGVRLDVSDPGSC 106 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSGGGGHHHHHHHTT--------SSSSCEEEEECCTTCHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHHh--------hCCCcEEEEEEeCCCHHHH
Confidence 33455555 4 58999999999999994 999999998776654432110 01134455444 35677
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.++++++ ...+ .+=.++|+.++
T Consensus 107 ~~~~~~~-~~~~--g~iD~lvnnAg 128 (293)
T 3rih_A 107 ADAARTV-VDAF--GALDVVCANAG 128 (293)
T ss_dssp HHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7777776 5544 33357787654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.14 Score=45.67 Aligned_cols=85 Identities=8% Similarity=0.085 Sum_probs=54.4
Q ss_pred CCCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+..|..+| | .|-+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....++.++.+ .+..+
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~-~~~~~~~~~~~Dv~~~~~v 75 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGA----NVAVAGRSTADIDACVADL-------DQ-LGSGKVIGVQTDVSDRAQC 75 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HT-TSSSCEEEEECCTTSHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh-hCCCcEEEEEcCCCCHHHH
Confidence 33344444 5 58999999999999994 9999999988876554321 00 01134555544 35667
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.+++++ ...+ .+=.++|++++
T Consensus 76 ~~~~~~~-~~~~--g~id~lvnnAg 97 (262)
T 3pk0_A 76 DALAGRA-VEEF--GGIDVVCANAG 97 (262)
T ss_dssp HHHHHHH-HHHH--SCCSEEEECCC
T ss_pred HHHHHHH-HHHh--CCCCEEEECCC
Confidence 7777776 5444 33357787654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.21 Score=45.47 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=49.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh-cCcCCCc-cccChHHHh--hcCCEEEEee---ChHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH-WPEPMDF-ALNDNHRII--KEAEYVFLAM---KPQY 136 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~-l~~~~g~-~~~s~~e~~--~~aDvIilaV---~~~~ 136 (341)
+++.|.|+ |-+|.++++.|++.|. +|++++|+++.... +... .. ......+.+ ...++.++.+ .+..
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~----~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 29 KVAFITGAARGQGRSHAITLAREGA----DIIAIDVCKQLDGVKLPMS-TPDDLAETVRQVEALGRRIIASQVDVRDFDA 103 (299)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEECCSCCTTCCSCCC-CHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeccccccccccccc-CHHHHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 34555555 8999999999999995 99999987321100 0000 00 000000111 1245666655 3566
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+..+++++ ...+ .+=.++|+.++
T Consensus 104 v~~~~~~~-~~~~--g~iD~lv~nAg 126 (299)
T 3t7c_A 104 MQAAVDDG-VTQL--GRLDIVLANAA 126 (299)
T ss_dssp HHHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHHH-HHHh--CCCCEEEECCC
Confidence 77777776 5444 33347777654
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.14 Score=48.20 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..+|.|||+|.+|+.++++|..+|. .+++++|.+
T Consensus 36 ~~~VlivG~GGlG~~ia~~La~~Gv---g~itlvD~d 69 (346)
T 1y8q_A 36 ASRVLLVGLKGLGAEIAKNLILAGV---KGLTMLDHE 69 (346)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEECCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEEECC
Confidence 4689999999999999999999996 689998754
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.15 Score=45.50 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=53.5
Q ss_pred CCCeEEEE-cc-c--HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChH
Q psy316 63 MWTKVGFI-GA-G--NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQ 135 (341)
Q Consensus 63 m~~kIgiI-G~-G--~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~ 135 (341)
+.-|+.+| |+ | -+|.++++.|.+.|. +|.+.+|+++.++.+.+.. +.....++.++.+ .+.
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga----~Vvi~~r~~~~~~~~~~~~--------~~~~~~~~~~~~~Dv~~~~ 71 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA----KLVFTYRKERSRKELEKLL--------EQLNQPEAHLYQIDVQSDE 71 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTTC----EEEEEESSGGGHHHHHHHH--------GGGTCSSCEEEECCTTCHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH--------HhcCCCcEEEEEccCCCHH
Confidence 33455555 86 3 599999999999995 9999999987766554320 1112233444443 466
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.++++++ ...+ .+=.++|+.++
T Consensus 72 ~v~~~~~~~-~~~~--G~iD~lvnnAg 95 (256)
T 4fs3_A 72 EVINGFEQI-GKDV--GNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHHHH-HHHH--CCCSEEEECCC
T ss_pred HHHHHHHHH-HHHh--CCCCEEEeccc
Confidence 777877776 5444 33346776644
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.18 Score=45.56 Aligned_cols=83 Identities=10% Similarity=0.063 Sum_probs=54.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
.+++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+.+
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~Dv~d~~~v~~ 90 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGI----AVYGCARDAKNVSAAVDGL-------RA--AGHDVDGSSCDVTSTDEVHA 90 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HT--TTCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEECCCCCHHHHHH
Confidence 345666665 8999999999999995 8999999988776554321 00 1234555544 3566777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|+.++
T Consensus 91 ~~~~~-~~~~--g~id~lv~nAg 110 (279)
T 3sju_A 91 AVAAA-VERF--GPIGILVNSAG 110 (279)
T ss_dssp HHHHH-HHHH--CSCCEEEECCC
T ss_pred HHHHH-HHHc--CCCcEEEECCC
Confidence 77776 5444 33357787654
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.029 Score=52.86 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=24.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIA 96 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v 96 (341)
+||||+|+|.+|..+.+.|.+++ .+.-+|..
T Consensus 2 ikVgInG~G~IGr~llR~l~~~~-~p~~eiva 32 (337)
T 1rm4_O 2 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVV 32 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCS-SCSEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhCC-CCCeEEEE
Confidence 58999999999999999998874 23335543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.21 Score=43.80 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=54.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++.+.+.+++ .+ ...++.++.+ .+..++++
T Consensus 6 k~vlITGas~gIG~~~a~~l~~~G~----~v~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~~ 72 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALASKGA----TVVGTATSQASAEKFENSM-------KE--KGFKARGLVLNISDIESIQNF 72 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCceEEEEecCCCHHHHHHH
Confidence 34555554 8999999999999994 9999999988776654421 11 1234545444 35677788
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ .... .+=.++|++++
T Consensus 73 ~~~~-~~~~--~~id~li~~Ag 91 (247)
T 3lyl_A 73 FAEI-KAEN--LAIDILVNNAG 91 (247)
T ss_dssp HHHH-HHTT--CCCSEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 8777 5444 33357787754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.21 Score=45.68 Aligned_cols=82 Identities=10% Similarity=0.014 Sum_probs=54.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+.++
T Consensus 32 k~vlVTGas~gIG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~Dv~d~~~v~~~ 98 (301)
T 3tjr_A 32 RAAVVTGGASGIGLATATEFARRGA----RLVLSDVDQPALEQAVNGL-------RG--QGFDAHGVVCDVRHLDEMVRL 98 (301)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCceEEEEccCCCHHHHHHH
Confidence 45666665 8999999999999994 8999999988877654421 10 1234555544 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 99 ~~~~-~~~~--g~id~lvnnAg 117 (301)
T 3tjr_A 99 ADEA-FRLL--GGVDVVFSNAG 117 (301)
T ss_dssp HHHH-HHHH--SSCSEEEECCC
T ss_pred HHHH-HHhC--CCCCEEEECCC
Confidence 7766 4443 33347787654
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.11 Score=46.63 Aligned_cols=77 Identities=19% Similarity=0.139 Sum_probs=47.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++...... ...+.++.+ .+..+.++
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~--------------~~~~~~~~~Dv~~~~~v~~~ 89 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGH----RVIISYRTEHASVTELR--------------QAGAVALYGDFSCETGIMAF 89 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTC----CEEEEESSCCHHHHHHH--------------HHTCEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCChHHHHHHHH--------------hcCCeEEECCCCCHHHHHHH
Confidence 34555554 8999999999999994 89999998765322111 011222222 35567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 90 ~~~~-~~~~--g~iD~lv~nAg 108 (260)
T 3gem_A 90 IDLL-KTQT--SSLRAVVHNAS 108 (260)
T ss_dssp HHHH-HHHC--SCCSEEEECCC
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7776 5444 33347777654
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.021 Score=51.92 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=40.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila 131 (341)
|||.|.|+ |-+|+.+++.|++.|+ +|++..|++...+ +. ......+.+..+|.||=+
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~----~V~~l~R~~~~~~-~~-----~~~~~~~~l~~~d~vihl 58 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH----EVTLVSRKPGPGR-IT-----WDELAASGLPSCDAAVNL 58 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSCCTTE-EE-----HHHHHHHCCCSCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCCCcCe-ee-----cchhhHhhccCCCEEEEe
Confidence 78999987 9999999999999994 9999999764321 00 001112345678888743
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.13 Score=46.44 Aligned_cols=84 Identities=11% Similarity=0.152 Sum_probs=52.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
.+++.|.|+ |-+|.++++.|++.|. +|++.+| +++.++.+.+++ +......+.++.+ .+..+.
T Consensus 25 ~k~~lVTGas~GIG~~ia~~la~~G~----~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~~~~~Dv~d~~~v~ 92 (281)
T 3v2h_A 25 TKTAVITGSTSGIGLAIARTLAKAGA----NIVLNGFGAPDEIRTVTDEV--------AGLSSGTVLHHPADMTKPSEIA 92 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC----EEEEECCCCHHHHHHHHHHH--------HTTCSSCEEEECCCTTCHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCChHHHHHHHHHH--------hhccCCcEEEEeCCCCCHHHHH
Confidence 345556664 8999999999999994 9999998 555555443310 0001234445443 356677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+++++ ...+ .+=.++|+.++
T Consensus 93 ~~~~~~-~~~~--g~iD~lv~nAg 113 (281)
T 3v2h_A 93 DMMAMV-ADRF--GGADILVNNAG 113 (281)
T ss_dssp HHHHHH-HHHT--SSCSEEEECCC
T ss_pred HHHHHH-HHHC--CCCCEEEECCC
Confidence 777776 5544 33347787644
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.14 Score=45.44 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=52.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.++++ ..+.++.+ .+..++++
T Consensus 10 k~vlITGas~gIG~~~a~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~D~~~~~~~~~~ 73 (261)
T 3n74_A 10 KVALITGAGSGFGEGMAKRFAKGGA----KVVIVDRDKAGAERVAGEIG------------DAALAVAADISKEADVDAA 73 (261)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHC------------TTEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHhC------------CceEEEEecCCCHHHHHHH
Confidence 45666665 7899999999999994 89999999988776654321 23333333 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 74 ~~~~-~~~~--g~id~li~~Ag 92 (261)
T 3n74_A 74 VEAA-LSKF--GKVDILVNNAG 92 (261)
T ss_dssp HHHH-HHHH--SCCCEEEECCC
T ss_pred HHHH-HHhc--CCCCEEEECCc
Confidence 7766 5444 33347777654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.1 Score=46.33 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=53.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhc-CCEEEEee---ChHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKE-AEYVFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~-aDvIilaV---~~~~v~~ 139 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.+++ .+.... ..+.++.+ .+..+.+
T Consensus 8 k~~lVTGas~GIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 8 GLAIITGASQGIGAVIAAGLATDGY----RVVLIARSKQNLEKVHDEI-------MRSNKHVQEPIVLPLDITDCTKADT 76 (250)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHTC----EEEEEESCHHHHHHHHHHH-------HHHCTTSCCCEEEECCTTCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HHhccccCcceEEeccCCCHHHHHH
Confidence 34555555 8999999999999994 9999999988877655421 111111 34445444 3566777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|+.++
T Consensus 77 ~~~~~-~~~~--g~iD~lvnnAg 96 (250)
T 3nyw_A 77 EIKDI-HQKY--GAVDILVNAAA 96 (250)
T ss_dssp HHHHH-HHHH--CCEEEEEECCC
T ss_pred HHHHH-HHhc--CCCCEEEECCC
Confidence 77776 5444 33347777643
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.12 Score=41.33 Aligned_cols=76 Identities=21% Similarity=0.115 Sum_probs=47.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc-cc--cChHHHhh--cCCEEEEeeCh---
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF-AL--NDNHRIIK--EAEYVFLAMKP--- 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~-~~--~s~~e~~~--~aDvIilaV~~--- 134 (341)
.+++.|||+|..|..+++.|.+.. .+++. +++.++++..... .|+ +. .+..+.++ ..|.||+|+|.
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~---g~~vvg~~d~~~~~~g~~i--~g~pV~g~~~l~~~~~~~~id~viia~~~~~~ 78 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGK---EFHPIAFIDDDRKKHKTTM--QGITIYRPKYLERLIKKHCISTVLLAVPSASQ 78 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSS---SEEEEEEECSCGGGTTCEE--TTEEEECGGGHHHHHHHHTCCEEEECCTTSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CcEEEEEEECCcccCCCEe--cCeEEECHHHHHHHHHHCCCCEEEEeCCCCCH
Confidence 357999999999999999998752 24654 5676655432211 244 32 33444443 57889999874
Q ss_pred HHHHHHHHHh
Q psy316 135 QYLDSAIQGL 144 (341)
Q Consensus 135 ~~v~~vl~~i 144 (341)
....+++..+
T Consensus 79 ~~~~~i~~~l 88 (141)
T 3nkl_A 79 VQKKVIIESL 88 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 2345555544
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.023 Score=56.68 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=36.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM 111 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~ 111 (341)
.+++.|+|+|.+|.+++..|.+.|. +|++++|++++++.+.+++
T Consensus 364 ~k~vlV~GaGGig~aia~~L~~~G~----~V~i~~R~~~~a~~la~~~ 407 (523)
T 2o7s_A 364 SKTVVVIGAGGAGKALAYGAKEKGA----KVVIANRTYERALELAEAI 407 (523)
T ss_dssp --CEEEECCSHHHHHHHHHHHHHCC-----CEEEESSHHHHHHHHHHT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHc
Confidence 3578999999999999999999994 8999999999888776544
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.18 Score=44.83 Aligned_cols=83 Identities=11% Similarity=0.146 Sum_probs=53.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.++ ..+ ....++.++.+ .+..+.++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~D~~~~~~~~~~ 75 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGA----HIVLVARQVDRLHEAARS-------LKE-KFGVRVLEVAVDVATPEGVDAV 75 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHH-------HHH-HHCCCEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHH-------HHH-hcCCceEEEEcCCCCHHHHHHH
Confidence 45666665 9999999999999994 999999998776654332 111 00234555443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 76 ~~~~-~~~~--g~id~lv~~Ag 94 (263)
T 3ai3_A 76 VESV-RSSF--GGADILVNNAG 94 (263)
T ss_dssp HHHH-HHHH--SSCSEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7766 4444 33347787754
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.047 Score=47.67 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=45.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--------cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--------ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--------~~~s~~e~~~~aDvIilaV~ 133 (341)
|+|.|.| .|.+|.++++.|++.|+ ..+|++.+|++++.+.+... ++ ...+..++++..|+||-+.-
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~G~--~~~V~~~~r~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag 93 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQGL--FSKVTLIGRRKLTFDEEAYK-NVNQEVVDFEKLDDYASAFQGHDVGFCCLG 93 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTC--CSEEEEEESSCCCCCSGGGG-GCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred CeEEEECCCcHHHHHHHHHHHcCCC--CCEEEEEEcCCCCccccccC-CceEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence 6799998 59999999999999982 12899999987655432211 11 11223445667898888764
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.078 Score=48.70 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=46.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcCCCc--c---ccC----hHHHhhcCCEEEEee
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEPMDF--A---LND----NHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~s----~~e~~~~aDvIilaV 132 (341)
|+|.|.|+ |.+|+.+++.|++. | ++|++.+|++++.+.+....++ . ..+ ..++++.+|+||-+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH----YEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT----CEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC----CEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 57999987 99999999999998 6 4999999988776654332232 1 112 234567899999763
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.17 Score=45.79 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=55.5
Q ss_pred CCCe-EEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTK-VGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~k-IgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
|..| +.|.|+ |-+|.++++.|++.|. +|++.+|++++.+.+.++..-......+ ...++.++.+ .+..+
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v 80 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGA----NVALVAKSAEPHPKLPGTIYTAAKEIEE--AGGQALPIVGDIRDGDAV 80 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTC----EEEEEESCCSCCSSSCCCHHHHHHHHHH--HTSEEEEEECCTTSHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEECChhhhhhhhHHHHHHHHHHHh--cCCcEEEEECCCCCHHHH
Confidence 4444 455554 8999999999999994 9999999987665554321001111111 1345555554 35677
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.++++++ ...+ .+=.++|++++
T Consensus 81 ~~~~~~~-~~~~--g~id~lvnnAg 102 (285)
T 3sc4_A 81 AAAVAKT-VEQF--GGIDICVNNAS 102 (285)
T ss_dssp HHHHHHH-HHHH--SCCSEEEECCC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7788776 5544 33347787654
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.2 Score=45.22 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=50.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++. ...++.++.+ .+..+..+
T Consensus 30 k~vlVTGas~gIG~aia~~L~~~G~----~V~~~~r~~~~~~~~~~~l~----------~~~~~~~~~~Dv~d~~~v~~~ 95 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLLEAGA----RVFICARDAEACADTATRLS----------AYGDCQAIPADLSSEAGARRL 95 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHHT----------TSSCEEECCCCTTSHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHHH----------hcCceEEEEeeCCCHHHHHHH
Confidence 44556665 8999999999999994 89999999877665433210 0012333322 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 96 ~~~~-~~~~--g~iD~lvnnAg 114 (276)
T 2b4q_A 96 AQAL-GELS--ARLDILVNNAG 114 (276)
T ss_dssp HHHH-HHHC--SCCSEEEECCC
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7766 4443 33347777644
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.14 Score=46.30 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=52.3
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHHH
Q psy316 66 KVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSAI 141 (341)
Q Consensus 66 kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~vl 141 (341)
++.|.| .|-+|.++++.|++.|. +|++.+|++++++.+.+++ ...+.++.+ .+..+..++
T Consensus 7 ~~lVTGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~v~~~~ 70 (281)
T 3zv4_A 7 VALITGGASGLGRALVDRFVAEGA----RVAVLDKSAERLRELEVAH------------GGNAVGVVGDVRSLQDQKRAA 70 (281)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHT------------BTTEEEEECCTTCHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC----EEEEEeCCHHHHHHHHHHc------------CCcEEEEEcCCCCHHHHHHHH
Confidence 445555 58999999999999994 9999999988877654432 123444443 356677777
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++ ...+ .+=.++|+.++
T Consensus 71 ~~~-~~~~--g~iD~lvnnAg 88 (281)
T 3zv4_A 71 ERC-LAAF--GKIDTLIPNAG 88 (281)
T ss_dssp HHH-HHHH--SCCCEEECCCC
T ss_pred HHH-HHhc--CCCCEEEECCC
Confidence 776 5444 33357787644
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.15 Score=45.52 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=53.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.| .|-+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....+.++.+ .+..+..+
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~v~~~ 96 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGA----RVVLTARDVEKLRAVEREI-------VA--AGGEAESHACDLSHSDAIAAF 96 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCEEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HH--hCCceeEEEecCCCHHHHHHH
Confidence 4455566 49999999999999994 8999999988876654421 11 1233444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 97 ~~~~-~~~~--g~id~lv~~Ag 115 (262)
T 3rkr_A 97 ATGV-LAAH--GRCDVLVNNAG 115 (262)
T ss_dssp HHHH-HHHH--SCCSEEEECCC
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7776 5444 33347787654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.16 Score=45.82 Aligned_cols=81 Identities=10% Similarity=0.144 Sum_probs=53.0
Q ss_pred CCCeE-EEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKV-GFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kI-giIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+..|+ .|.| .|-+|.++++.|++.|. +|++.+|++++++.+.+++ ...+.++.+ .+..+
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~------------~~~~~~~~~Dv~d~~~v 88 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNGA----YVVVADVNEDAAVRVANEI------------GSKAFGVRVDVSSAKDA 88 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHHH------------CTTEEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHh------------CCceEEEEecCCCHHHH
Confidence 44444 4555 48999999999999994 9999999988776654421 123333333 35667
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.+++++ ...+ .+=.++|++++
T Consensus 89 ~~~~~~~-~~~~--g~iD~lv~nAg 110 (277)
T 4dqx_A 89 ESMVEKT-TAKW--GRVDVLVNNAG 110 (277)
T ss_dssp HHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7777766 4444 33347787654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.2 Score=44.82 Aligned_cols=85 Identities=9% Similarity=0.087 Sum_probs=55.3
Q ss_pred CCCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+..|+.+| | .|-+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....++.++.+ .+..+
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~-~~~~~~~~~~~Dv~~~~~v 85 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGA----RLVLSGRDVSELDAARRAL-------GE-QFGTDVHTVAIDLAEPDAP 85 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH-HHCCCEEEEECCTTSTTHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HH-hcCCcEEEEEecCCCHHHH
Confidence 33345544 5 58999999999999995 8999999988877654421 11 11345555554 34567
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+++++ ...+ .+=.++|+.++
T Consensus 86 ~~~~~~~-~~~~--g~id~lv~nAg 107 (266)
T 4egf_A 86 AELARRA-AEAF--GGLDVLVNNAG 107 (266)
T ss_dssp HHHHHHH-HHHH--TSCSEEEEECC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7777776 5544 33357887754
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.18 Score=45.33 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=54.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
+.+++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+.
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~Dv~d~~~v~ 69 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA----KILLGARRQARIEAIATEI-------RD--AGGTALAQVLDVTDRHSVA 69 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHHH-------HH--TTCEEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEcCCCCHHHHH
Confidence 3445666665 8999999999999994 8999999988877654421 11 1233444443 356677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+++++ ...+ .+=.++|++++
T Consensus 70 ~~~~~~-~~~~--g~iD~lVnnAG 90 (264)
T 3tfo_A 70 AFAQAA-VDTW--GRIDVLVNNAG 90 (264)
T ss_dssp HHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHH-HHHc--CCCCEEEECCC
Confidence 777776 5444 33347787644
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.25 Score=44.16 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=50.8
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 66 KVGFIG-AGNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 66 kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
++.|.| .|.+|.++++.|++.|. +|++. .|+++..+.+.+++ .+ ...++.++.+ .+..+..+
T Consensus 28 ~vlITGas~gIG~a~a~~l~~~G~----~V~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~Dl~~~~~v~~~ 94 (272)
T 4e3z_A 28 VVLVTGGSRGIGAAVCRLAARQGW----RVGVNYAANREAADAVVAAI-------TE--SGGEAVAIPGDVGNAADIAAM 94 (272)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHHH-------HH--TTCEEEEEECCTTCHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHCCC----EEEEEcCCChhHHHHHHHHH-------Hh--cCCcEEEEEcCCCCHHHHHHH
Confidence 444555 59999999999999995 78664 88887766554320 11 1234444444 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 95 ~~~~-~~~~--g~id~li~nAg 113 (272)
T 4e3z_A 95 FSAV-DRQF--GRLDGLVNNAG 113 (272)
T ss_dssp HHHH-HHHH--SCCCEEEECCC
T ss_pred HHHH-HHhC--CCCCEEEECCC
Confidence 7776 5444 33347777654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.12 Score=46.15 Aligned_cols=85 Identities=12% Similarity=0.138 Sum_probs=52.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++.+.+.+++. +......+.++.+ .+..+..+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~~D~~~~~~v~~~ 76 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALLLKGA----KVALVDWNLEAGVQCKAALH-------EQFEPQKTLFIQCDVADQQQLRDT 76 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHT-------TTSCGGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHH-------hhcCCCceEEEecCCCCHHHHHHH
Confidence 45667765 8999999999999994 99999999877654322110 0000112333333 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++++ ...+ .+=.++|++++.
T Consensus 77 ~~~~-~~~~--g~id~lv~~Ag~ 96 (267)
T 2gdz_A 77 FRKV-VDHF--GRLDILVNNAGV 96 (267)
T ss_dssp HHHH-HHHH--SCCCEEEECCCC
T ss_pred HHHH-HHHc--CCCCEEEECCCC
Confidence 7776 5444 333578877543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.19 Score=45.20 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=58.4
Q ss_pred CCCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
++=|+.+| |.+-||.++++.|.+.|. +|.+++|++++++.+.+++ .+ ...+++++.+ .++++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga----~Vv~~~~~~~~~~~~~~~i-------~~--~g~~~~~~~~Dvt~~~~v 71 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS----IVVAVELLEDRLNQIVQEL-------RG--MGKEVLGVKADVSKKKDV 71 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHH
Confidence 44577777 557899999999999995 9999999998887765531 11 1234555554 46778
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.+++++ ...+ .+=.++|+.++
T Consensus 72 ~~~~~~~-~~~~--G~iDiLVNNAG 93 (254)
T 4fn4_A 72 EEFVRRT-FETY--SRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCc
Confidence 8888877 5555 33357887654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.12 Score=45.12 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=52.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ .....+.++.+ .+..+.++
T Consensus 3 k~vlITGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~-~~~~~~~~~~~D~~~~~~v~~~ 70 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALARDGY----ALALGARSVDRLEKIAHEL-------MQ-EQGVEVFYHHLDVSKAESVEEF 70 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH-HHCCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh-hcCCeEEEEEeccCCHHHHHHH
Confidence 34566665 8899999999999994 8999999988877654421 10 11345555554 35566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 71 ~~~~-~~~~--g~id~li~~Ag 89 (235)
T 3l77_A 71 SKKV-LERF--GDVDVVVANAG 89 (235)
T ss_dssp CC-H-HHHH--SSCSEEEECCC
T ss_pred HHHH-HHhc--CCCCEEEECCc
Confidence 6665 4433 33347777643
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.18 Score=44.62 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=53.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ....+.++.+ .+..+.
T Consensus 1 m~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~v~ 67 (256)
T 1geg_A 1 MKKVALVTGAGQGIGKAIALRLVKDGF----AVAIADYNDATAKAVASEI-------NQ--AGGHAVAVKVDVSDRDQVF 67 (256)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTSHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEecCCCHHHHH
Confidence 4456777765 8999999999999994 8999999987766543321 00 0123444433 345677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++ ...+ .+=.++|+.++
T Consensus 68 ~~~~~~-~~~~--g~id~lv~nAg 88 (256)
T 1geg_A 68 AAVEQA-RKTL--GGFDVIVNNAG 88 (256)
T ss_dssp HHHHHH-HHHT--TCCCEEEECCC
T ss_pred HHHHHH-HHHh--CCCCEEEECCC
Confidence 777766 4444 33347777643
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.036 Score=49.82 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=41.6
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhh--cCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK--EAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~--~aDvIilaV 132 (341)
|+|||.|.|+ |.+|+.+++.|++.| ++|++.+|.+-. +. ...+..++++ .+|+||-+.
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~D---~~-----d~~~~~~~~~~~~~d~vi~~a 64 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEE----YDIYPFDKKLLD---IT-----NISQVQQVVQEIRPHIIIHCA 64 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTT----EEEEEECTTTSC---TT-----CHHHHHHHHHHHCCSEEEECC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCC----CEEEEecccccC---CC-----CHHHHHHHHHhcCCCEEEECC
Confidence 7779999985 999999999999988 499999983211 11 1123344555 599999764
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.11 Score=49.19 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=31.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..+|.|||+|.+|+.++..|..+|. .+++++|++.
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGv---g~i~lvD~D~ 152 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGI---GEIILIDNDQ 152 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC---SEEEEEECCB
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CeEEEECCCc
Confidence 5689999999999999999999996 6899999864
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.11 Score=44.20 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=36.6
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
.++|.|+| +|.+|.++++.+...|. +|++++|++++.+.+++ +|.
T Consensus 39 g~~vlV~Ga~ggiG~~~~~~~~~~G~----~V~~~~~~~~~~~~~~~-~g~ 84 (198)
T 1pqw_A 39 GERVLIHSATGGVGMAAVSIAKMIGA----RIYTTAGSDAKREMLSR-LGV 84 (198)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTC----EEEEEESSHHHHHHHHT-TCC
T ss_pred CCEEEEeeCCChHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHH-cCC
Confidence 46799999 69999999999988884 89999999888766644 453
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.25 Score=43.06 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=52.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++.+.+.++ ..+ ....++.++.. .+..+.++
T Consensus 8 ~~vlVtGasggiG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~-------~~~-~~~~~~~~~~~D~~~~~~~~~~ 75 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLASAGS----TVIITGTSGERAKAVAEE-------IAN-KYGVKAHGVEMNLLSEESINKA 75 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHH-------HHH-HHCCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCChHHHHHHHHH-------HHh-hcCCceEEEEccCCCHHHHHHH
Confidence 34556654 9999999999999994 999999998776654331 000 01234444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 76 ~~~~-~~~~--~~~d~vi~~Ag 94 (248)
T 2pnf_A 76 FEEI-YNLV--DGIDILVNNAG 94 (248)
T ss_dssp HHHH-HHHS--SCCSEEEECCC
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7766 5444 33357787654
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.13 Score=45.46 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=50.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++++.+.++.++ .++.+ .+..+.++
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~~--------------~~~~~D~~~~~~~~~~ 67 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGA----RLVACDIEEGPLREAAEAVGA--------------HPVVMDVADPASVERG 67 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHTTTC--------------EEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHcCC--------------EEEEecCCCHHHHHHH
Confidence 45666665 8999999999999994 999999998877665443221 11111 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 68 ~~~~-~~~~--g~id~lvn~Ag 86 (245)
T 1uls_A 68 FAEA-LAHL--GRLDGVVHYAG 86 (245)
T ss_dssp HHHH-HHHH--SSCCEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 6665 4433 33347777643
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.29 Score=43.65 Aligned_cols=83 Identities=7% Similarity=0.046 Sum_probs=55.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+.++
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~Dv~~~~~v~~~ 78 (264)
T 3ucx_A 12 KVVVISGVGPALGTTLARRCAEQGA----DLVLAARTVERLEDVAKQV-------TD--TGRRALSVGTDITDDAQVAHL 78 (264)
T ss_dssp CEEEEESCCTTHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCcC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEcCCCCHHHHHHH
Confidence 44555665 7899999999999995 8999999988877654421 11 1234555554 35677777
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
++++ ...+ .+=.++|++++.
T Consensus 79 ~~~~-~~~~--g~id~lv~nAg~ 98 (264)
T 3ucx_A 79 VDET-MKAY--GRVDVVINNAFR 98 (264)
T ss_dssp HHHH-HHHT--SCCSEEEECCCS
T ss_pred HHHH-HHHc--CCCcEEEECCCC
Confidence 7776 5544 333578877543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.22 Score=45.42 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=51.0
Q ss_pred CeEEEEccc---HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 65 TKVGFIGAG---NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G---~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
+++.|.|++ -+|.++++.|++.|. +|++.+|+++..+.+.+. .+... .+.++.+ .+..++
T Consensus 31 k~vlVTGasg~~GIG~~ia~~la~~G~----~V~~~~r~~~~~~~~~~~--------~~~~~--~~~~~~~Dv~d~~~v~ 96 (296)
T 3k31_A 31 KKGVIIGVANDKSLAWGIAKAVCAQGA----EVALTYLSETFKKRVDPL--------AESLG--VKLTVPCDVSDAESVD 96 (296)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTC----EEEEEESSGGGHHHHHHH--------HHHHT--CCEEEECCTTCHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHCCC----EEEEEeCChHHHHHHHHH--------HHhcC--CeEEEEcCCCCHHHHH
Confidence 456667875 899999999999995 899999986544333220 11111 2233333 356778
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+++++ ...+ .+=.++|++++
T Consensus 97 ~~~~~~-~~~~--g~iD~lVnnAG 117 (296)
T 3k31_A 97 NMFKVL-AEEW--GSLDFVVHAVA 117 (296)
T ss_dssp HHHHHH-HHHH--SCCSEEEECCC
T ss_pred HHHHHH-HHHc--CCCCEEEECCC
Confidence 888777 5544 33357887754
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.22 Score=44.17 Aligned_cols=84 Identities=14% Similarity=0.238 Sum_probs=54.3
Q ss_pred CCCeEE-EEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVG-FIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIg-iIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
|..|+. |.| .|-+|.++++.|++.|. +|++.+|++++++.+.+++. . ....+.++.+ .+..+
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~----~-----~~~~~~~~~~Dv~~~~~v 70 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGA----RVVITGRTKEKLEEAKLEIE----Q-----FPGQILTVQMDVRNTDDI 70 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHC----C-----STTCEEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHHH----h-----cCCcEEEEEccCCCHHHH
Confidence 444444 445 48999999999999994 89999999888776543210 0 0123444443 35677
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.++++++ ...+ .+=.++|++++
T Consensus 71 ~~~~~~~-~~~~--g~id~lv~nAg 92 (257)
T 3imf_A 71 QKMIEQI-DEKF--GRIDILINNAA 92 (257)
T ss_dssp HHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7777776 5444 33357887754
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.11 Score=47.27 Aligned_cols=78 Identities=10% Similarity=0.099 Sum_probs=53.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe---eChHHHHHH
Q psy316 66 KVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQYLDSA 140 (341)
Q Consensus 66 kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila---V~~~~v~~v 140 (341)
|+++| |.+-+|.++++.|.+.|. +|.+++|++++++.+.+++| .+.+.+. ..+.+++++
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga----~V~i~~r~~~~l~~~~~~~g------------~~~~~~~~Dv~~~~~v~~~ 93 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGA----RVFITGRRKDVLDAAIAEIG------------GGAVGIQADSANLAELDRL 93 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHC------------TTCEEEECCTTCHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHcC------------CCeEEEEecCCCHHHHHHH
Confidence 68877 457899999999999995 99999999988876655432 1222222 246678888
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|..++
T Consensus 94 ~~~~-~~~~--G~iDiLVNNAG 112 (273)
T 4fgs_A 94 YEKV-KAEA--GRIDVLFVNAG 112 (273)
T ss_dssp HHHH-HHHH--SCEEEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 8777 5544 32246776644
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.13 Score=46.47 Aligned_cols=84 Identities=10% Similarity=0.115 Sum_probs=53.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---Ch-HHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KP-QYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~-~~v~~ 139 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++.+.+.+++ .+ .....+.++.+ .+ ..+..
T Consensus 13 k~vlITGas~GIG~~~a~~L~~~G~----~V~~~~r~~~~~~~~~~~l-------~~-~~~~~~~~~~~Dl~~~~~~v~~ 80 (311)
T 3o26_A 13 RCAVVTGGNKGIGFEICKQLSSNGI----MVVLTCRDVTKGHEAVEKL-------KN-SNHENVVFHQLDVTDPIATMSS 80 (311)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HT-TTCCSEEEEECCTTSCHHHHHH
T ss_pred cEEEEecCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh-cCCCceEEEEccCCCcHHHHHH
Confidence 44555565 8999999999999994 9999999988766543321 00 01124555544 23 56777
Q ss_pred HHHHhhhcccccCCCcEEEEecCC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
+++.+ ...+ .+=.+||++++.
T Consensus 81 ~~~~~-~~~~--g~iD~lv~nAg~ 101 (311)
T 3o26_A 81 LADFI-KTHF--GKLDILVNNAGV 101 (311)
T ss_dssp HHHHH-HHHH--SSCCEEEECCCC
T ss_pred HHHHH-HHhC--CCCCEEEECCcc
Confidence 77766 5444 333478877543
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.17 Score=49.15 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=30.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..||.|||+|.+|+.++++|..+|. .+|+++|.+
T Consensus 40 ~~~VlvvG~GGlGs~va~~La~aGv---g~i~ivD~D 73 (434)
T 1tt5_B 40 TCKVLVIGAGGLGCELLKNLALSGF---RQIHVIDMD 73 (434)
T ss_dssp TCCEEEECSSTHHHHHHHHHHHTTC---CCEEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCC---CEEEEEcCC
Confidence 4689999999999999999999996 689998653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.16 Score=46.88 Aligned_cols=84 Identities=6% Similarity=0.014 Sum_probs=54.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.+++ ...-....+.++.+ .+..+.++
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~----~Vv~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dl~~~~~v~~~ 77 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGC----KVAIADIRQDSIDKALATL-------EAEGSGPEVMGVQLDVASREGFKMA 77 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HHHTCGGGEEEEECCTTCHHHHHHH
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HhcCCCCeEEEEECCCCCHHHHHHH
Confidence 45667765 8999999999999994 8999999998877654421 11111124444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 78 ~~~~-~~~~--g~id~lv~nAg 96 (319)
T 3ioy_A 78 ADEV-EARF--GPVSILCNNAG 96 (319)
T ss_dssp HHHH-HHHT--CCEEEEEECCC
T ss_pred HHHH-HHhC--CCCCEEEECCC
Confidence 7776 5444 33347777644
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.21 Score=44.94 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=57.5
Q ss_pred CCCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
.+=|+.+| |.+-+|.++++.|.+.|. +|.+.+|+++++++..+++ .+ ...+++.+.+ .+.++
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga----~Vvi~~~~~~~~~~~~~~l-------~~--~g~~~~~~~~Dv~~~~~v 73 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA----RVILNDIRATLLAESVDTL-------TR--KGYDAHGVAFDVTDELAI 73 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC----EEEECCSCHHHHHHHHHHH-------HH--TTCCEEECCCCTTCHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEeeCCCHHHH
Confidence 45578888 668999999999999995 9999999988876654321 00 1234444443 46778
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.+++++ ...+ .+=.++|+.++
T Consensus 74 ~~~~~~~-~~~~--G~iDiLVNNAG 95 (255)
T 4g81_D 74 EAAFSKL-DAEG--IHVDILINNAG 95 (255)
T ss_dssp HHHHHHH-HHTT--CCCCEEEECCC
T ss_pred HHHHHHH-HHHC--CCCcEEEECCC
Confidence 8888887 5544 33347887643
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.046 Score=51.32 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=31.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
.|||.|||+|.-|..+|..|.++|+ +|+|++|++.
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G~----~v~v~Er~~~ 35 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHGI----KVTIYERNSA 35 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC----CEEEEecCCC
Confidence 3799999999999999999999995 9999998654
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.11 Score=47.86 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=44.4
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh------hcCcCCCc--------cccChHHHhhcCC
Q psy316 62 PMWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL------HWPEPMDF--------ALNDNHRIIKEAE 126 (341)
Q Consensus 62 ~m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~------~l~~~~g~--------~~~s~~e~~~~aD 126 (341)
+|.++|.|.| +|-+|+.+++.|++.|+ +|++..|++++.+ .+....++ ...+..++++.+|
T Consensus 7 ~~~~~vlVTGatGfIG~~l~~~Ll~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D 82 (338)
T 2rh8_A 7 IGKKTACVVGGTGFVASLLVKLLLQKGY----AVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCD 82 (338)
T ss_dssp --CCEEEEECTTSHHHHHHHHHHHHTTC----EEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCS
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC----EEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCC
Confidence 3678999998 69999999999999994 8988888765321 11110111 1123456777899
Q ss_pred EEEEe
Q psy316 127 YVFLA 131 (341)
Q Consensus 127 vIila 131 (341)
+||-+
T Consensus 83 ~Vih~ 87 (338)
T 2rh8_A 83 FVFHV 87 (338)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99965
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.22 Score=44.57 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=52.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|.+.|. +|++.+|++++++.+.++++ .++.++.+ .+..+.++
T Consensus 7 k~vlITGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~D~~~~~~v~~~ 70 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFAREGA----SLVAVDREERLLAEAVAALE------------AEAIAVVADVSDPKAVEAV 70 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHTCC------------SSEEEEECCTTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhc------------CceEEEEcCCCCHHHHHHH
Confidence 45666655 8999999999999994 99999999887766544321 23333333 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|++++
T Consensus 71 ~~~~-~~~~--g~iD~lvnnAg 89 (263)
T 2a4k_A 71 FAEA-LEEF--GRLHGVAHFAG 89 (263)
T ss_dssp HHHH-HHHH--SCCCEEEEGGG
T ss_pred HHHH-HHHc--CCCcEEEECCC
Confidence 7666 4444 33347777654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=94.05 E-value=0.2 Score=45.14 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=53.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|+ +|++.+|++++++.+.++ ..+ ....++.++.+ .+..+.++
T Consensus 29 k~vlITGasggIG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~-------~~~-~~~~~~~~~~~Dl~d~~~v~~~ 96 (286)
T 1xu9_A 29 KKVIVTGASKGIGREMAYHLAKMGA----HVVVTARSKETLQKVVSH-------CLE-LGAASAHYIAGTMEDMTFAEQF 96 (286)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHH-------HHH-HTCSEEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHH-------HHH-hCCCceEEEeCCCCCHHHHHHH
Confidence 56777776 8999999999999994 899999998877655432 011 11113444433 24566677
Q ss_pred HHHhhhcccccCCCcEEEEecCCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi 164 (341)
++++ ...+ .+=.++|++++|+
T Consensus 97 ~~~~-~~~~--g~iD~li~naag~ 117 (286)
T 1xu9_A 97 VAQA-GKLM--GGLDMLILNHITN 117 (286)
T ss_dssp HHHH-HHHH--TSCSEEEECCCCC
T ss_pred HHHH-HHHc--CCCCEEEECCccC
Confidence 7665 4433 3334677664443
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.32 Score=45.58 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=54.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhh--cCCEEEEee---ChHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK--EAEYVFLAM---KPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~--~aDvIilaV---~~~~v~ 138 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++.+.+.+. + ....+.+. ...+.++.+ .+..+.
T Consensus 46 k~vlVTGas~GIG~aia~~La~~Ga----~Vvl~~r~~~~~~~l~~~--l--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~ 117 (346)
T 3kvo_A 46 CTVFITGASRGIGKAIALKAAKDGA----NIVIAAKTAQPHPKLLGT--I--YTAAEEIEAVGGKALPCIVDVRDEQQIS 117 (346)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC----EEEEEESCCSCCSSSCCC--H--HHHHHHHHHTTCEEEEEECCTTCHHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHHHCCC----EEEEEECChhhhhhhHHH--H--HHHHHHHHhcCCeEEEEEccCCCHHHHH
Confidence 34555555 8999999999999994 999999988766554432 1 01111111 234555544 356777
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+++++ ...+ .+=.+||++++
T Consensus 118 ~~~~~~-~~~~--g~iDilVnnAG 138 (346)
T 3kvo_A 118 AAVEKA-IKKF--GGIDILVNNAS 138 (346)
T ss_dssp HHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHH-HHHc--CCCCEEEECCC
Confidence 888777 5544 33357887754
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.19 Score=44.58 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=45.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHHH
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSAI 141 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~vl 141 (341)
++.|.|+ |-+|.++++.|++.|. +|++.+|++++.+.+.++++ ..+.++.+ .+..+.+++
T Consensus 9 ~~lVTGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~Dv~~~~~v~~~~ 72 (257)
T 3tpc_A 9 VFIVTGASSGLGAAVTRMLAQEGA----TVLGLDLKPPAGEEPAAELG------------AAVRFRNADVTNEADATAAL 72 (257)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC----EEEEEESSCC------------------------CEEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC----EEEEEeCChHHHHHHHHHhC------------CceEEEEccCCCHHHHHHHH
Confidence 4455555 8999999999999994 89999999877665554321 12233332 356677777
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++ ...+ .+=.++|+.++
T Consensus 73 ~~~-~~~~--g~id~lv~nAg 90 (257)
T 3tpc_A 73 AFA-KQEF--GHVHGLVNCAG 90 (257)
T ss_dssp HHH-HHHH--SCCCEEEECCC
T ss_pred HHH-HHHc--CCCCEEEECCC
Confidence 776 5444 33347787654
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.041 Score=54.44 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=48.7
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-c-ccChHHHhhcCCEEEEe--eCh
Q psy316 64 WTKVGFIGAGNMAQA-VATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-A-LNDNHRIIKEAEYVFLA--MKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~-~~s~~e~~~~aDvIila--V~~ 134 (341)
.++|.|||.|..|.+ +|+.|.+.|+ +|+++|+++. ..+.|.+ .|+ . .....+.+..+|+||++ +|+
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~----~V~~~D~~~~~~~~~l~~-~gi~~~~g~~~~~~~~~d~vV~Spgi~~ 93 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGY----QISGSDLAPNSVTQHLTA-LGAQIYFHHRPENVLDASVVVVSTAISA 93 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTC----EEEEECSSCCHHHHHHHH-TTCEEESSCCGGGGTTCSEEEECTTSCT
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCC----eEEEEECCCCHHHHHHHH-CCCEEECCCCHHHcCCCCEEEECCCCCC
Confidence 368999999999985 9999999994 9999997543 3445655 476 2 22333456789999986 565
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.35 Score=43.37 Aligned_cols=84 Identities=8% Similarity=0.143 Sum_probs=52.0
Q ss_pred CCCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHH
Q psy316 63 MWTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQY 136 (341)
Q Consensus 63 m~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~ 136 (341)
+..|+.+| | .|-+|.++++.|++.|. +|++.+| +++..+.+.+++ .+ ...++.++.+ .+..
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~----~V~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~d~~~ 92 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGA----KVAVNYASSAGAADEVVAAI-------AA--AGGEAFAVKADVSQESE 92 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHHH-------HH--TTCCEEEEECCTTSHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCChHHHHHHHHHH-------Hh--cCCcEEEEECCCCCHHH
Confidence 44455555 5 58999999999999995 8888777 655555443310 00 1234555544 3566
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+++++ ...+ .+=.++|+.++
T Consensus 93 v~~~~~~~-~~~~--g~id~lv~nAg 115 (269)
T 4dmm_A 93 VEALFAAV-IERW--GRLDVLVNNAG 115 (269)
T ss_dssp HHHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHHH-HHHc--CCCCEEEECCC
Confidence 77777776 5444 33357787654
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.16 Score=44.41 Aligned_cols=85 Identities=13% Similarity=0.048 Sum_probs=53.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++++.+.+++. .. ...++.++.. .+..+.
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G~----~V~~~~r~~~~~~~~~~~~~---~~-----~~~~~~~~~~D~~~~~~~~ 68 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGD----RVAALDLSAETLEETARTHW---HA-----YADKVLRVRADVADEGDVN 68 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHS---TT-----TGGGEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHHH---Hh-----cCCcEEEEEecCCCHHHHH
Confidence 4466777865 9999999999999994 89999999877665433110 00 0123333332 355677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++ ...+ .+=.+||++++
T Consensus 69 ~~~~~~-~~~~--~~id~li~~Ag 89 (250)
T 2cfc_A 69 AAIAAT-MEQF--GAIDVLVNNAG 89 (250)
T ss_dssp HHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHH-HHHh--CCCCEEEECCC
Confidence 777766 4444 33347777654
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.32 Score=43.11 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=51.7
Q ss_pred CCCe-EEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTK-VGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~k-IgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
|..| +.|.| .|.+|.++++.|++.|+ +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~D~~~~~~~ 78 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGA----HVVVSSRKQENVDRTVATL-------QG--EGLSVTGTVCHVGKAEDR 78 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------Hh--cCCceEEEEccCCCHHHH
Confidence 4434 55555 58999999999999994 9999999987765543310 00 1223444333 34566
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
..+++++ ...+ .+=.++|++++
T Consensus 79 ~~~~~~~-~~~~--g~iD~lv~~Ag 100 (260)
T 2zat_A 79 ERLVAMA-VNLH--GGVDILVSNAA 100 (260)
T ss_dssp HHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 6777665 4434 33347777654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.23 Score=46.81 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=54.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-c------cChHHHhh-----cCCEEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-L------NDNHRIIK-----EAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-~------~s~~e~~~-----~aDvIil 130 (341)
..+|.|+|+|.+|...++.+...|. .+|++.++++++++.+++ +|+ . . .+..+.+. ..|+||-
T Consensus 194 g~~VlV~GaG~vG~~a~q~a~~~Ga---~~Vi~~~~~~~~~~~a~~-lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid 269 (378)
T 3uko_A 194 GSNVAIFGLGTVGLAVAEGAKTAGA---SRIIGIDIDSKKYETAKK-FGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE 269 (378)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHTC---SCEEEECSCTTHHHHHHT-TTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CeEEEEcCCHHHHHHHHH-cCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence 4689999999999998888877773 479999999999886655 776 2 1 12222222 4799999
Q ss_pred eeCh-HHHHHHHHHh
Q psy316 131 AMKP-QYLDSAIQGL 144 (341)
Q Consensus 131 aV~~-~~v~~vl~~i 144 (341)
++.. ..+...++-+
T Consensus 270 ~~g~~~~~~~~~~~l 284 (378)
T 3uko_A 270 CIGNVSVMRAALECC 284 (378)
T ss_dssp CSCCHHHHHHHHHTB
T ss_pred CCCCHHHHHHHHHHh
Confidence 8875 4555555443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.21 Score=46.76 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=53.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc-C---hHH---Hh-----hcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN-D---NHR---II-----KEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~-s---~~e---~~-----~~aDvIi 129 (341)
..+|.|+|+|.+|...++.+...|. .+|++.++++++++.+++ +|. ..+ + ..+ .+ ...|+||
T Consensus 172 g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~~~~~~~~~~a~~-lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 172 GHKVLVCGAGPIGMVTLLVAKAMGA---AQVVVTDLSATRLSKAKE-IGADLVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESCHHHHHHHHH-TTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEECCCHHHHHHHHH-hCCCEEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 3589999999999998887777773 489999999988877665 676 221 1 122 11 2489999
Q ss_pred EeeCh-HHHHHHHHHh
Q psy316 130 LAMKP-QYLDSAIQGL 144 (341)
Q Consensus 130 laV~~-~~v~~vl~~i 144 (341)
-++.. ..+...++-+
T Consensus 248 d~~g~~~~~~~~~~~l 263 (356)
T 1pl8_A 248 ECTGAEASIQAGIYAT 263 (356)
T ss_dssp ECSCCHHHHHHHHHHS
T ss_pred ECCCChHHHHHHHHHh
Confidence 99964 4555555444
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.057 Score=53.46 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=45.7
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV 132 (341)
+|||.|.| +|.+|+.+++.|++.|+ +|++.+|++.+.+.+.-. ......+.+..+|+||-+.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~----~V~~l~R~~~~~~~v~~d---~~~~~~~~l~~~D~Vih~A 209 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH----EVIQLVRKEPKPGKRFWD---PLNPASDLLDGADVLVHLA 209 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESSSCCTTCEECC---TTSCCTTTTTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCCCCccceeec---ccchhHHhcCCCCEEEECC
Confidence 36899998 59999999999999984 999999987654332111 1223345667899999764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.11 Score=47.90 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=44.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-Cc-----cccC---hHHHhh--cCCEEEEe
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-DF-----ALND---NHRIIK--EAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-g~-----~~~s---~~e~~~--~aDvIila 131 (341)
.|+|.|.|+ |-+|+.+++.|++.|+ +|++.+|++.....+.+++ ++ -..+ ..++++ .+|+||-+
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~ 95 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGH----EILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS 95 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTC----EEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence 468999987 9999999999999984 9999999654332211111 22 1122 334566 89999987
Q ss_pred e
Q psy316 132 M 132 (341)
Q Consensus 132 V 132 (341)
.
T Consensus 96 A 96 (330)
T 2pzm_A 96 A 96 (330)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.43 Score=43.08 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=54.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++++.+.++ ..+ ....++.++.+ .+..+..+
T Consensus 27 k~vlITGasggiG~~la~~L~~~G~----~V~~~~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dl~~~~~~~~~ 94 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLSSLGA----QCVIASRKMDVLKATAEQ-------ISS-QTGNKVHAIQCDVRDPDMVQNT 94 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHH-------HHH-HHSSCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHH-------HHH-hcCCceEEEEeCCCCHHHHHHH
Confidence 56777765 8999999999999994 899999998776654332 111 01234555444 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 95 ~~~~-~~~~--g~id~li~~Ag 113 (302)
T 1w6u_A 95 VSEL-IKVA--GHPNIVINNAA 113 (302)
T ss_dssp HHHH-HHHT--CSCSEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7776 4444 33357887754
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.21 Score=44.73 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=50.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|+ +|++.+|++++++.+.++++ ..+.++.+ .+..+..+
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~Dv~~~~~~~~~ 69 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGD----TVIGTARRTEALDDLVAAYP------------DRAEAISLDVTDGERIDVV 69 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSGGGGHHHHHHCT------------TTEEEEECCTTCHHHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHhcc------------CCceEEEeeCCCHHHHHHH
Confidence 44555555 9999999999999994 99999999877665543221 12333332 34566666
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 70 ~~~~-~~~~--g~id~lv~~Ag 88 (281)
T 3m1a_A 70 AADV-LARY--GRVDVLVNNAG 88 (281)
T ss_dssp HHHH-HHHH--SCCSEEEECCC
T ss_pred HHHH-HHhC--CCCCEEEECCC
Confidence 6665 4433 23346776644
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.23 Score=44.19 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=52.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |-+|.++++.|++.|. +|++.+|++++++.+.++++ .++.++.+ .+..+..+
T Consensus 9 k~~lVTGas~gIG~a~a~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~Dv~~~~~v~~~ 72 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLVEGGA----EVLLTGRNESNIARIREEFG------------PRVHALRSDIADLNEIAVL 72 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHG------------GGEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHhC------------CcceEEEccCCCHHHHHHH
Confidence 45556655 8999999999999994 99999999888776554321 23333333 35567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 73 ~~~~-~~~~--g~id~lv~nAg 91 (255)
T 4eso_A 73 GAAA-GQTL--GAIDLLHINAG 91 (255)
T ss_dssp HHHH-HHHH--SSEEEEEECCC
T ss_pred HHHH-HHHh--CCCCEEEECCC
Confidence 7766 5444 33346776643
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.1 Score=49.10 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=45.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccC---hHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALND---NHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s---~~e~~~~aDvIilaV 132 (341)
+|+|.|.|+ |.+|+.+++.|++.|+ +|++.+|++.+...... .++ -..+ ..++++.+|+||-+.
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~~~~~-~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEGH----YVIASDWKKNEHMTEDM-FCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSCCSSSCGGG-TCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCeEEEECCccHHHHHHHHHHHHCCC----eEEEEECCCccchhhcc-CCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 468999987 9999999999999984 99999998655432221 122 1122 345567899999775
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.076 Score=49.58 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=47.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcC---CCc-----cccC---hHHHhhcCCEEEE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEP---MDF-----ALND---NHRIIKEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~---~g~-----~~~s---~~e~~~~aDvIil 130 (341)
.++|.|.|+ |.+|+.+++.|++. |. ++|++++|++.+.+.+.++ .++ -..+ ..++++..|+||-
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~---~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 97 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNA---KKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH 97 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCC---SEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCC---CEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence 478999985 99999999999998 83 4899999998766543321 122 1122 2345668999997
Q ss_pred ee
Q psy316 131 AM 132 (341)
Q Consensus 131 aV 132 (341)
+.
T Consensus 98 ~A 99 (344)
T 2gn4_A 98 AA 99 (344)
T ss_dssp CC
T ss_pred CC
Confidence 76
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.044 Score=49.73 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=44.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhc--CCCCCCeEEEEcCChhhhhhcCcCCCc---cccC---hHHHhh--cCCEEEEe
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRT--GLCIPAQIIASAPSERFKLHWPEPMDF---ALND---NHRIIK--EAEYVFLA 131 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~--G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s---~~e~~~--~aDvIila 131 (341)
|.|+|.|.|+ |.+|+.+++.|++. | ++|++.+|++.+.+ +...... -..+ ..++++ .+|+||-+
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~~~g----~~V~~~~r~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~ 75 (312)
T 2yy7_A 1 MNPKILIIGACGQIGTELTQKLRKLYGT----ENVIASDIRKLNTD-VVNSGPFEVVNALDFNQIEHLVEVHKITDIYLM 75 (312)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHHHCG----GGEEEEESCCCSCH-HHHSSCEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred CCceEEEECCccHHHHHHHHHHHHhCCC----CEEEEEcCCCcccc-ccCCCceEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence 5688999987 99999999999998 7 48999988765422 1111111 1122 334555 78999977
Q ss_pred e
Q psy316 132 M 132 (341)
Q Consensus 132 V 132 (341)
.
T Consensus 76 a 76 (312)
T 2yy7_A 76 A 76 (312)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=93.82 E-value=0.042 Score=49.30 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=46.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhc--CCCCCCeEEEEcCChhhhhhcCcCCCc-----cccC---hHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRT--GLCIPAQIIASAPSERFKLHWPEPMDF-----ALND---NHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~--G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s---~~e~~~~aDvIilaV~ 133 (341)
|+|.|.|+ |.+|+.+++.|++. | ++|++.+|++++.+.+.. .++ -..+ ..++++.+|+||-+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g----~~V~~~~r~~~~~~~l~~-~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA----SQIIAIVRNVEKASTLAD-QGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG----GGEEEEESCTTTTHHHHH-TTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC----CeEEEEEcCHHHHhHHhh-cCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 57899987 99999999999987 7 599999998776654433 132 1122 3455678999997764
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.02 Score=51.12 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=44.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-----cccC---hHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-----ALND---NHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s---~~e~~~~aDvIilaV 132 (341)
|+++|.|.|+ |.+|+.+++.|++.| ++|++.+|++.+. +.. ++ -..+ ..++++..|+||-+.
T Consensus 1 M~~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~--~~~--~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 71 (267)
T 3ay3_A 1 MLNRLLVTGAAGGVGSAIRPHLGTLA----HEVRLSDIVDLGA--AEA--HEEIVACDLADAQAVHDLVKDCDGIIHLG 71 (267)
T ss_dssp CEEEEEEESTTSHHHHHHGGGGGGTE----EEEEECCSSCCCC--CCT--TEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCceEEEECCCCHHHHHHHHHHHhCC----CEEEEEeCCCccc--cCC--CccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence 5568999987 999999999999988 4999999986532 111 21 1122 345567899999875
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.4 Score=41.94 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=51.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
++|.|.|+ |.+|.++++.|++.|+ +|++.+|++++.+.+.+++ .+ ...++.++.. .+..+.++
T Consensus 12 ~~vlVtGasggiG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~--~~~~~~~~~~D~~~~~~~~~~ 78 (255)
T 1fmc_A 12 KCAIITGAGAGIGKEIAITFATAGA----SVVVSDINADAANHVVDEI-------QQ--LGGQAFACRCDITSEQELSAL 78 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHHHH-------HH--hCCceEEEEcCCCCHHHHHHH
Confidence 45666665 9999999999999984 8999999987765543310 00 1123444333 34567777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 79 ~~~~-~~~~--~~~d~vi~~Ag 97 (255)
T 1fmc_A 79 ADFA-ISKL--GKVDILVNNAG 97 (255)
T ss_dssp HHHH-HHHH--SSCCEEEECCC
T ss_pred HHHH-HHhc--CCCCEEEECCC
Confidence 7665 4433 33347777654
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.037 Score=52.08 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=51.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcC-ChhhhhhcC---cCC-----------------C--c-cc--cC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAP-SERFKLHWP---EPM-----------------D--F-AL--ND 117 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r-~~e~~~~l~---~~~-----------------g--~-~~--~s 117 (341)
+||||+|+|.+|..+.+.|.++. .-+|. +.++ +++.+..+. ..+ | + .. .+
T Consensus 2 ikVgI~G~G~iGr~l~R~l~~~~---~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 78 (334)
T 3cmc_O 2 VKVGINGFGRIGRNVFRAALKNP---DIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERD 78 (334)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCT---TEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECCCHHHHHHHHHHhCCC---CeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCC
Confidence 58999999999999999887763 12444 4444 222221111 001 1 1 11 13
Q ss_pred hHHH-hh--cCCEEEEeeChHHHHHHHHHhhhcccccCCC--cEEEEecC
Q psy316 118 NHRI-IK--EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSS--RCIISMLV 162 (341)
Q Consensus 118 ~~e~-~~--~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~--~iIVs~~a 162 (341)
+.++ .. .+|+||.|++...-.+..... + ..| ++|||..+
T Consensus 79 p~~i~w~~~~vDvV~~atg~~~s~e~a~~~----l--~~Gak~vVId~pa 122 (334)
T 3cmc_O 79 PENLAWGEIGVDIVVESTGRFTKREDAAKH----L--EAGAKKVIISAPA 122 (334)
T ss_dssp GGGCCTGGGTCCEEEECSSSCCBHHHHTHH----H--HTTCSEEEESSCC
T ss_pred hhhcCcccCccCEEEECCCchhhHHHHHHH----H--HCCCCEEEEeCCC
Confidence 4333 22 699999999976555555443 2 233 38887643
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.23 Score=43.57 Aligned_cols=78 Identities=9% Similarity=0.103 Sum_probs=50.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCE-EEEee---ChHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEY-VFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDv-IilaV---~~~~v~~ 139 (341)
+++.|.|+ |.+|.++++.|++.|+ +|++.+|++++++.+.+++ ..++ .++.. .+..+.+
T Consensus 12 k~vlITGasggiG~~la~~l~~~G~----~V~~~~r~~~~~~~~~~~~------------~~~~~~~~~~D~~~~~~~~~ 75 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFAASGA----RLILIDREAAALDRAAQEL------------GAAVAARIVADVTDAEAMTA 75 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH------------GGGEEEEEECCTTCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHh------------cccceeEEEEecCCHHHHHH
Confidence 45666655 9999999999999994 8999999987766543321 1122 22222 3456777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ .. + .+=.+||++++
T Consensus 76 ~~~~~-~~-~--~~id~li~~Ag 94 (254)
T 2wsb_A 76 AAAEA-EA-V--APVSILVNSAG 94 (254)
T ss_dssp HHHHH-HH-H--SCCCEEEECCC
T ss_pred HHHHH-Hh-h--CCCcEEEECCc
Confidence 77766 54 4 33357777654
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.31 Score=42.33 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=50.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. .++|++.+|++++.+.+.+ . ...++.++.+ .+..+.++
T Consensus 4 k~vlItGasggiG~~la~~l~~~g~--~~~V~~~~r~~~~~~~l~~-~-----------~~~~~~~~~~D~~~~~~~~~~ 69 (250)
T 1yo6_A 4 GSVVVTGANRGIGLGLVQQLVKDKN--IRHIIATARDVEKATELKS-I-----------KDSRVHVLPLTVTCDKSLDTF 69 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTT--CCEEEEEESSGGGCHHHHT-C-----------CCTTEEEEECCTTCHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHHhcCC--CcEEEEEecCHHHHHHHHh-c-----------cCCceEEEEeecCCHHHHHHH
Confidence 45666654 9999999999999881 1389999999877665533 1 1223333333 24566677
Q ss_pred HHHhhhcccccC--CCcEEEEecC
Q psy316 141 IQGLVNDKVTLN--SSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~--~~~iIVs~~a 162 (341)
++++ ...+ . +=.+||++++
T Consensus 70 ~~~~-~~~~--g~~~id~li~~Ag 90 (250)
T 1yo6_A 70 VSKV-GEIV--GSDGLSLLINNAG 90 (250)
T ss_dssp HHHH-HHHH--GGGCCCEEEECCC
T ss_pred HHHH-HHhc--CCCCCcEEEECCc
Confidence 7665 4433 2 2247777654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.69 E-value=0.28 Score=46.18 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=54.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc------ChHHHhh-----cCCEEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN------DNHRIIK-----EAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~------s~~e~~~-----~aDvIil 130 (341)
..+|.|+|+|.+|...++.+...|. .+|++.++++++++.+++ +|+ ..+ +..+.+. ..|+||-
T Consensus 192 g~~VlV~GaG~vG~~a~qla~~~Ga---~~Vi~~~~~~~~~~~~~~-lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid 267 (374)
T 2jhf_A 192 GSTCAVFGLGGVGLSVIMGCKAAGA---ARIIGVDINKDKFAKAKE-VGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 267 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CeEEEEcCCHHHHHHHHH-hCCceEecccccchhHHHHHHHHhCCCCcEEEE
Confidence 3589999999999999888777773 379999999998887765 675 221 1222222 4799999
Q ss_pred eeCh-HHHHHHHHHh
Q psy316 131 AMKP-QYLDSAIQGL 144 (341)
Q Consensus 131 aV~~-~~v~~vl~~i 144 (341)
++.. ..+...++-+
T Consensus 268 ~~g~~~~~~~~~~~l 282 (374)
T 2jhf_A 268 VIGRLDTMVTALSCC 282 (374)
T ss_dssp CSCCHHHHHHHHHHB
T ss_pred CCCCHHHHHHHHHHh
Confidence 9864 5555555544
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.11 Score=48.78 Aligned_cols=45 Identities=18% Similarity=0.064 Sum_probs=37.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
..+|.|+|+|.+|...++.+...|. +|++.++++++++.+++ +|+
T Consensus 190 g~~VlV~G~G~vG~~a~qla~~~Ga----~Vi~~~~~~~~~~~~~~-lGa 234 (363)
T 3uog_A 190 GDRVVVQGTGGVALFGLQIAKATGA----EVIVTSSSREKLDRAFA-LGA 234 (363)
T ss_dssp TCEEEEESSBHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHH-HTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----EEEEEecCchhHHHHHH-cCC
Confidence 3689999999999999988888884 89999999988877655 565
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.23 Score=44.00 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=51.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC-ChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP-SERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r-~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
++|.|.|+ |.+|.++++.|++.|. +|++.+| ++++.+.+.+++ .+ ...++.++.. .+..+.+
T Consensus 22 k~vlItGasggiG~~la~~l~~~G~----~v~~~~r~~~~~~~~~~~~l-------~~--~~~~~~~~~~D~~~~~~~~~ 88 (274)
T 1ja9_A 22 KVALTTGAGRGIGRGIAIELGRRGA----SVVVNYGSSSKAAEEVVAEL-------KK--LGAQGVAIQADISKPSEVVA 88 (274)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHHH-------HH--TTCCEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC----EEEEEcCCchHHHHHHHHHH-------Hh--cCCcEEEEEecCCCHHHHHH
Confidence 45666665 8999999999999994 8998888 766655443210 00 1234444443 3456777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.+||++++
T Consensus 89 ~~~~~-~~~~--~~~d~vi~~Ag 108 (274)
T 1ja9_A 89 LFDKA-VSHF--GGLDFVMSNSG 108 (274)
T ss_dssp HHHHH-HHHH--SCEEEEECCCC
T ss_pred HHHHH-HHHc--CCCCEEEECCC
Confidence 77766 5444 33346776643
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.059 Score=49.79 Aligned_cols=65 Identities=14% Similarity=-0.025 Sum_probs=43.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc-CCCc-cccChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE-PMDF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-~~g~-~~~s~~e~~~~aDvIilaV 132 (341)
..|+|.|.|+ |-+|+.+++.|++.|+ +|++.+|++.. ..+.- ...+ ...+..++++.+|+||-+.
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~G~----~V~~~~r~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQGR----TVRGFDLRPSG-TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTC----CEEEEESSCCS-SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC----EEEEEeCCCCC-CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 3478999987 9999999999999994 99999998654 11100 0001 1122345677899999764
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.11 Score=48.66 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=45.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcC-Chhhhh---hcCc---CC--------------C--c-cc--cC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAP-SERFKL---HWPE---PM--------------D--F-AL--ND 117 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r-~~e~~~---~l~~---~~--------------g--~-~~--~s 117 (341)
+||||+|.|.+|..+.+.|.++.. -+|. +.++ +++.+. +... .+ | + .. .+
T Consensus 2 ikVgI~G~G~iG~~l~R~l~~~~~---veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 78 (330)
T 1gad_O 2 IKVGINGFGRIGRIVFRAAQKRSD---IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 78 (330)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSS---EEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECcCHHHHHHHHHHHcCCC---eEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCC
Confidence 589999999999999999887642 3444 4555 344322 1111 01 0 0 11 13
Q ss_pred hHHH-h--hcCCEEEEeeChHHHHHHHHH
Q psy316 118 NHRI-I--KEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 118 ~~e~-~--~~aDvIilaV~~~~v~~vl~~ 143 (341)
+.++ . ..+|+||.|++...-.+....
T Consensus 79 p~~i~w~~~~vDvVf~atg~~~s~e~a~~ 107 (330)
T 1gad_O 79 PANLKWDEVGVDVVAEATGLFLTDETARK 107 (330)
T ss_dssp GGGGCHHHHTCSEEEECSSSCCSHHHHTH
T ss_pred hhhCccccccCCEEEECCCccccHHHHHH
Confidence 3332 1 479999999997655555443
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.34 Score=42.98 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=52.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+.....++.++.+ .+..+..+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~v~~~ 76 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGA----RLLLFSRNREKLEAAASRI-------ASLVSGAQVDIVAGDIREPGDIDRL 76 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HHHSTTCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHH-------HhcCCCCeEEEEEccCCCHHHHHHH
Confidence 45666655 8999999999999994 8999999987766544321 11000124444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ . =.++|++++
T Consensus 77 ~~~~-~~~~--g-id~lv~~Ag 94 (260)
T 2z1n_A 77 FEKA-RDLG--G-ADILVYSTG 94 (260)
T ss_dssp HHHH-HHTT--C-CSEEEECCC
T ss_pred HHHH-HHhc--C-CCEEEECCC
Confidence 7776 5444 3 247777644
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.06 Score=50.58 Aligned_cols=91 Identities=11% Similarity=0.151 Sum_probs=52.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcC-ChhhhhhcC---c---CC--------------C--c-cc--cC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAP-SERFKLHWP---E---PM--------------D--F-AL--ND 117 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r-~~e~~~~l~---~---~~--------------g--~-~~--~s 117 (341)
.||||+|+|.+|..+.+.|.+++ -+.-+|. +.++ +++.+..+. . ++ | + .. .+
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~-~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 79 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERK-NPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD 79 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-CTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCC-CCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence 48999999999999999998872 0123555 4444 232222111 0 00 1 1 11 24
Q ss_pred hHHH-hh--cCCEEEEeeChHHHHHHHHHhhhcccccCCC--cEEEEecC
Q psy316 118 NHRI-IK--EAEYVFLAMKPQYLDSAIQGLVNDKVTLNSS--RCIISMLV 162 (341)
Q Consensus 118 ~~e~-~~--~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~--~iIVs~~a 162 (341)
+.++ .. .+|+||.|++...-.+..... + ..| ++|||..+
T Consensus 80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~----l--~aGakkvVId~~a 123 (332)
T 1hdg_O 80 PSKLPWKDLGVDFVIESTGVFRNREKAELH----L--QAGAKKVIITAPA 123 (332)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHH----H--HTTCSEEEESSCC
T ss_pred hHHCcccccCCCEEEECCccchhHHHHHHH----H--HcCCcEEEEeCCC
Confidence 4443 23 799999999976555555443 3 233 38887643
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.36 Score=43.19 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=51.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
|.+++.|.|+ |-+|.++++.|++.|. +|++++|++++++.+..+ .+.++.+ .+..+.
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~---------------~~~~~~~Dv~d~~~v~ 75 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEGH----PLLLLARRVERLKALNLP---------------NTLCAQVDVTDKYTFD 75 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC----CEEEEESCHHHHHTTCCT---------------TEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHhhcC---------------CceEEEecCCCHHHHH
Confidence 3445566665 8999999999999994 899999998887765432 1222222 345666
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++ ...+ .+=.++|++++
T Consensus 76 ~~~~~~-~~~~--g~iD~lvnnAg 96 (266)
T 3p19_A 76 TAITRA-EKIY--GPADAIVNNAG 96 (266)
T ss_dssp HHHHHH-HHHH--CSEEEEEECCC
T ss_pred HHHHHH-HHHC--CCCCEEEECCC
Confidence 777665 4444 33347777644
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.27 Score=46.34 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=53.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc------ChHHHhh-----cCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN------DNHRIIK-----EAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~------s~~e~~~-----~aDvIila 131 (341)
.+|.|+|+|.+|...++.+...|. .+|++.++++++++.+++ +|+ ..+ +..+.+. ..|+||-+
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~~~~~~~~~~a~~-lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~ 272 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIAGA---SRIIAIDINGEKFPKAKA-LGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 272 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---SEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---CeEEEEcCCHHHHHHHHH-hCCcEEEccccccchHHHHHHHHhCCCccEEEEC
Confidence 589999999999998887777773 379999999998887765 675 221 2222222 47999998
Q ss_pred eCh-HHHHHHHHHh
Q psy316 132 MKP-QYLDSAIQGL 144 (341)
Q Consensus 132 V~~-~~v~~vl~~i 144 (341)
+.. ..+...++-+
T Consensus 273 ~G~~~~~~~~~~~l 286 (376)
T 1e3i_A 273 AGTAQTLKAAVDCT 286 (376)
T ss_dssp SCCHHHHHHHHHTB
T ss_pred CCCHHHHHHHHHHh
Confidence 864 5555555443
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.16 Score=45.79 Aligned_cols=80 Identities=11% Similarity=0.169 Sum_probs=52.5
Q ss_pred CCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 64 WTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 64 ~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
..|+.+| | .|-+|.++++.|++.|. +|++.+|++++++.+.++++ .++.++.+ .+..+.
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~Dv~d~~~v~ 90 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGY----GVALAGRRLDALQETAAEIG------------DDALCVPTDVTDPDSVR 90 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHT------------SCCEEEECCTTSHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhC------------CCeEEEEecCCCHHHHH
Confidence 3455555 5 58999999999999994 89999999887766544211 23333333 356677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+++++ ...+ .+=.++|++++
T Consensus 91 ~~~~~~-~~~~--g~iD~lVnnAg 111 (272)
T 4dyv_A 91 ALFTAT-VEKF--GRVDVLFNNAG 111 (272)
T ss_dssp HHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHH-HHHc--CCCCEEEECCC
Confidence 777776 5444 33357787654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.29 Score=43.86 Aligned_cols=81 Identities=7% Similarity=0.107 Sum_probs=53.0
Q ss_pred CCCeEE-EEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVG-FIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIg-iIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+..|+. |.| .|-+|.++++.|++.|. +|++.+|++++++.+.+++ ..++.++.+ .+..+
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~~------------~~~~~~~~~Dv~d~~~v 88 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQGA----IVGLHGTREDKLKEIAADL------------GKDVFVFSANLSDRKSI 88 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH------------CSSEEEEECCTTSHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHh------------CCceEEEEeecCCHHHH
Confidence 333444 445 58999999999999994 9999999988776654321 123444443 35667
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.+++++ ...+ .+=.++|+.++
T Consensus 89 ~~~~~~~-~~~~--g~iD~lvnnAg 110 (266)
T 3grp_A 89 KQLAEVA-EREM--EGIDILVNNAG 110 (266)
T ss_dssp HHHHHHH-HHHH--TSCCEEEECCC
T ss_pred HHHHHHH-HHHc--CCCCEEEECCC
Confidence 7777776 5444 33347777644
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.29 Score=44.26 Aligned_cols=81 Identities=12% Similarity=0.096 Sum_probs=53.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHHH
Q psy316 66 KVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSAI 141 (341)
Q Consensus 66 kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~vl 141 (341)
++.|.| .|-+|.++++.|++.|. +|++.+|++++++.+.+++. . ...++.++.+ .+..+..++
T Consensus 30 ~~lVTGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~l~----~-----~~~~~~~~~~Dv~d~~~v~~~~ 96 (283)
T 3v8b_A 30 VALITGAGSGIGRATALALAADGV----TVGALGRTRTEVEEVADEIV----G-----AGGQAIALEADVSDELQMRNAV 96 (283)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHHHT----T-----TTCCEEEEECCTTCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHHH----h-----cCCcEEEEEccCCCHHHHHHHH
Confidence 345555 48999999999999994 99999999887766544210 0 1234444444 356777777
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++ ...+ .+=.++|+.++
T Consensus 97 ~~~-~~~~--g~iD~lVnnAg 114 (283)
T 3v8b_A 97 RDL-VLKF--GHLDIVVANAG 114 (283)
T ss_dssp HHH-HHHH--SCCCEEEECCC
T ss_pred HHH-HHHh--CCCCEEEECCC
Confidence 776 5444 33347777654
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.14 Score=47.47 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc----cChHHHhh-----cCCEEEEe
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL----NDNHRIIK-----EAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~----~s~~e~~~-----~aDvIila 131 (341)
..+|.|+|+ |.+|.+.++.+...|. +|++++|++++++.+.+++|. .. .+..+.+. ..|++|-+
T Consensus 150 g~~vlI~Ga~g~iG~~~~~~a~~~Ga----~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 225 (336)
T 4b7c_A 150 GETVVISGAAGAVGSVAGQIARLKGC----RVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDN 225 (336)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEEC
Confidence 468999998 9999999998888884 899999999998887344675 11 12222221 37888888
Q ss_pred eChHHHHHHHH
Q psy316 132 MKPQYLDSAIQ 142 (341)
Q Consensus 132 V~~~~v~~vl~ 142 (341)
+-...+...++
T Consensus 226 ~g~~~~~~~~~ 236 (336)
T 4b7c_A 226 VGGEILDTVLT 236 (336)
T ss_dssp SCHHHHHHHHT
T ss_pred CCcchHHHHHH
Confidence 87654444443
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.35 Score=43.21 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=51.2
Q ss_pred CCCC-eEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHH
Q psy316 62 PMWT-KVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQY 136 (341)
Q Consensus 62 ~m~~-kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~ 136 (341)
.|.. ++.|.| .|.+|.++++.|++.|+ +|++.+|++++.+.+.+. ..+ ...++.++.+ .+..
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~----~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~Dl~~~~~ 97 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGA----DVAIWYNSHPADEKAEHL-------QKT--YGVHSKAYKCNISDPKS 97 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTC----EEEEEESSSCCHHHHHHH-------HHH--HCSCEEEEECCTTCHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHH-------HHh--cCCcceEEEeecCCHHH
Confidence 3444 455555 58999999999999994 899999986654433221 000 1234444443 3456
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.++++++ ...+ .+=.+||++++
T Consensus 98 ~~~~~~~~-~~~~--g~id~li~~Ag 120 (279)
T 3ctm_A 98 VEETISQQ-EKDF--GTIDVFVANAG 120 (279)
T ss_dssp HHHHHHHH-HHHH--SCCSEEEECGG
T ss_pred HHHHHHHH-HHHh--CCCCEEEECCc
Confidence 77777666 4433 33347777654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.29 Score=43.19 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=53.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++ .+ ...++.++.+ .+..+..+
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~Dv~~~~~~~~~ 74 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGA----AVAIAARRVEKLRALGDEL-------TA--AGAKVHVLELDVADRQGVDAA 74 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEECCCCCHHHHHHH
Confidence 45666655 8999999999999994 9999999988776554321 10 1234444443 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 75 ~~~~-~~~~--g~id~lv~nAg 93 (247)
T 2jah_A 75 VAST-VEAL--GGLDILVNNAG 93 (247)
T ss_dssp HHHH-HHHH--SCCSEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7766 4444 33347777643
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.41 Score=42.80 Aligned_cols=84 Identities=18% Similarity=0.064 Sum_probs=51.2
Q ss_pred CCCe-EEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChh------------hhhhcCcCCCccccChHHHhhcCCEE
Q psy316 63 MWTK-VGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSER------------FKLHWPEPMDFALNDNHRIIKEAEYV 128 (341)
Q Consensus 63 m~~k-IgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e------------~~~~l~~~~g~~~~s~~e~~~~aDvI 128 (341)
+.-| +.|.|+ |-+|.++++.|++.|. +|++.+|+.+ +++.+.++ .. ....++.
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~ 77 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADGA----DIIAVDLCDQIASVPYPLATPEELAATVKL-------VE--DIGSRIV 77 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEEECCSCCTTCSSCCCCHHHHHHHHHH-------HH--HHTCCEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC----eEEEEecccccccccccccchHHHHHHHHH-------HH--hcCCeEE
Confidence 4444 555554 8999999999999994 8999998732 22211110 00 1134566
Q ss_pred EEee---ChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 129 FLAM---KPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 129 ilaV---~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+ .+..+.++++++ ...+ .+=.++|++++
T Consensus 78 ~~~~D~~~~~~v~~~~~~~-~~~~--g~id~lv~nAg 111 (278)
T 3sx2_A 78 ARQADVRDRESLSAALQAG-LDEL--GRLDIVVANAG 111 (278)
T ss_dssp EEECCTTCHHHHHHHHHHH-HHHH--CCCCEEEECCC
T ss_pred EEeCCCCCHHHHHHHHHHH-HHHc--CCCCEEEECCC
Confidence 6655 356777777776 5444 33357887754
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.19 Score=47.92 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=48.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc----ChHHHhh------cCCEEEEe
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN----DNHRIIK------EAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~----s~~e~~~------~aDvIila 131 (341)
..+|.|+|+|.+|...++.+...|. .+|++.++++++++.+++ +|. ..+ +..+.+. ..|+||-+
T Consensus 214 g~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~~~~~~~~~~~~~-lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~ 289 (404)
T 3ip1_A 214 GDNVVILGGGPIGLAAVAILKHAGA---SKVILSEPSEVRRNLAKE-LGADHVIDPTKENFVEAVLDYTNGLGAKLFLEA 289 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEECSCHHHHHHHHH-HTCSEEECTTTSCHHHHHHHHTTTCCCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---CEEEEECCCHHHHHHHHH-cCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEEC
Confidence 4689999999999998887777773 489999999998877655 675 221 2222221 47888888
Q ss_pred eChH
Q psy316 132 MKPQ 135 (341)
Q Consensus 132 V~~~ 135 (341)
+...
T Consensus 290 ~g~~ 293 (404)
T 3ip1_A 290 TGVP 293 (404)
T ss_dssp SSCH
T ss_pred CCCc
Confidence 8644
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.14 Score=45.76 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=45.2
Q ss_pred eEEEEcc-cHHHHHHHHHHHhc--CCCCCCeEEEEcCChhhhhhcCcCCCc-----cccC---hHHHhhcCCEEEEeeC
Q psy316 66 KVGFIGA-GNMAQAVATSLIRT--GLCIPAQIIASAPSERFKLHWPEPMDF-----ALND---NHRIIKEAEYVFLAMK 133 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~--G~~~~~~V~v~~r~~e~~~~l~~~~g~-----~~~s---~~e~~~~aDvIilaV~ 133 (341)
||.|.|+ |.+|+.+++.|++. | ++|++.+|++++.+.+.. .++ -..+ ..++++.+|+||-+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g----~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA----SQIVAIVRNPAKAQALAA-QGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG----GGEEEEESCTTTCHHHHH-TTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC----ceEEEEEcChHhhhhhhc-CCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5788987 99999999999987 7 489999998776554433 132 1122 3455678999997764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.27 Score=46.29 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=53.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc------ChHHHhh-----cCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN------DNHRIIK-----EAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~------s~~e~~~-----~aDvIila 131 (341)
.+|.|+|+|.+|...++.....|. .+|++.++++++++.+++ +|+ ..+ +..+.+. ..|+||-+
T Consensus 193 ~~VlV~GaG~vG~~aiqlak~~Ga---~~Vi~~~~~~~~~~~a~~-lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~ 268 (373)
T 1p0f_A 193 STCAVFGLGGVGFSAIVGCKAAGA---SRIIGVGTHKDKFPKAIE-LGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 268 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC---SEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---CeEEEECCCHHHHHHHHH-cCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 589999999999998887777773 379999999998887765 775 221 2222222 47999999
Q ss_pred eCh-HHHHHHHHHh
Q psy316 132 MKP-QYLDSAIQGL 144 (341)
Q Consensus 132 V~~-~~v~~vl~~i 144 (341)
+.. ..+...++-+
T Consensus 269 ~g~~~~~~~~~~~l 282 (373)
T 1p0f_A 269 AGRIETMMNALQST 282 (373)
T ss_dssp SCCHHHHHHHHHTB
T ss_pred CCCHHHHHHHHHHH
Confidence 864 5555555444
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.32 Score=43.11 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=50.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++.|.|+ |.+|.++++.|++.|. +|++.+|++++++.+.+++. . ++.++.+ .+..+.++
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~----~--------~~~~~~~D~~d~~~v~~~ 76 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALDKAGA----TVAIADLDVMAAQAVVAGLE----N--------GGFAVEVDVTKRASVDAA 76 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHTCT----T--------CCEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHHHHh----c--------CCeEEEEeCCCHHHHHHH
Confidence 45666665 8999999999999994 99999999887765544221 0 2222222 34566677
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.+||++++
T Consensus 77 ~~~~-~~~~--g~iD~lv~~Ag 95 (263)
T 3ak4_A 77 MQKA-IDAL--GGFDLLCANAG 95 (263)
T ss_dssp HHHH-HHHH--TCCCEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCC
Confidence 7665 4433 33347777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 341 | ||||
| d1yqga1 | 111 | a.100.1.10 (A:153-263) Pyrroline-5-carboxylate red | 2e-18 | |
| d2ahra1 | 104 | a.100.1.10 (A:153-256) Pyrroline-5-carboxylate red | 2e-16 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 6e-15 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 2e-10 | |
| d1n1ea2 | 189 | c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen | 0.001 | |
| d1ks9a2 | 167 | c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc | 0.001 |
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 111 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 77.3 bits (190), Expect = 2e-18
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 235 ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLR 294
E M+ I+GSG AY+F ++DA+ + A++QG A + KG+ L +
Sbjct: 2 EEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQT--- 58
Query: 295 MDHAAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFS----SAARRTK 341
++ + S GG+T + A + V S + RR++
Sbjct: 59 -----GEDFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQ 104
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 104 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 72.0 bits (176), Expect = 2e-16
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 238 MNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDH 297
++F A+AGS AY++L ++A+A VK GIP+ AL I Q + S
Sbjct: 3 FDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASA--------SNLK 54
Query: 298 AAQAHPAVIKDQICSPGGSTIAGIHALEKAGVRTPFSSAARRT 340
+ P D ICSPGG+TIAG+ LE+ G+ SSA +T
Sbjct: 55 TSSQSPHDFIDAICSPGGTTIAGLMELERLGLTATVSSAIDKT 97
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 69.2 bits (168), Expect = 6e-15
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
V F+G GNMA AVA L++ G +I + + + + + +
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQG---GYRIYIANRGAEKRERLEKELGVETSATLPELHSD 58
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ + LA+KPQ +++A + + + ++S+ G+ + TL + L
Sbjct: 59 DVLILAVKPQDMEAACKNI------RTNGALVLSVAAGLSVGTLSRYL-------GGTRR 105
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEII 233
I+RVMPNT K G G++GM + + + +A +IM+ G+ +
Sbjct: 106 IVRVMPNTPGKIGLGVSGMYAEAEVSE--TDRRIADRIMKSVGLTVWL 151
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 56.2 bits (134), Expect = 2e-10
Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 19/170 (11%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEA 125
K+G IG G MA A+ L +T + II+ + ER K + + +I +
Sbjct: 2 KIGIIGVGKMASAIIKGLKQTPHEL---IISGSSLERSKEIAEQLALPYAMSHQDLIDQV 58
Query: 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPT 185
+ V L +KPQ ++ ++ L + + L L
Sbjct: 59 DLVILGIKPQLFETVLKPLHFKQP--------------IISMAAGISLQRLATFVGQDLP 104
Query: 186 IIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEIIPE 235
++R+MPN + + T + + + + E + + G I E
Sbjct: 105 LLRIMPNMNAQILQSSTALTGNALVSQ--ELQARVRDLTDSFGSTFDISE 152
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 37.1 bits (85), Expect = 0.001
Identities = 18/148 (12%), Positives = 43/148 (29%), Gaps = 12/148 (8%)
Query: 65 TKVGFIGAGNMAQAVATSLIRTGLCI---------PAQIIASAPSERFKLHWPEPMDFAL 115
K G+G A+A L + + + + F +
Sbjct: 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF 67
Query: 116 NDN-HRIIKEAEYVFLAMKPQYLDSAIQGLVNDKVT--LNSSRCIISMLVGVDLETLKKK 172
+ + AE + + Q+L + + + ++ G++ TLK
Sbjct: 68 TSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFP 127
Query: 173 LSVLVPNPNDAPTIIRVMPNTAMKYGKG 200
++ + P+ A++ G
Sbjct: 128 AEIIGEFLPSPLLSVLAGPSFAIEVATG 155
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Score = 36.8 bits (84), Expect = 0.001
Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 9/156 (5%)
Query: 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALN---DNHRII 122
K+ +G G + Q T+L + G + + P L + F + ++ +
Sbjct: 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL 61
Query: 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD-LETLKKKLSVLVPNPN 181
++ + + +K + A++ + TL + I+ + G+ +E L+ L+
Sbjct: 62 ATSDLLLVTLKAWQVSDAVK---SLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTT 118
Query: 182 DAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHL 217
R N + GIT + D + +L
Sbjct: 119 --THAARRDGNVIIHVANGITHIGPARQQDGDYSYL 152
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 341 | |||
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.97 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.96 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.9 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.89 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.84 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.79 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.76 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.76 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.72 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.68 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.67 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.59 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.57 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.54 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.54 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.54 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.51 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.47 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.46 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.45 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.92 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.83 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.63 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.61 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.55 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.5 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.47 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.45 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.45 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.4 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.38 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.37 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.36 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.35 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.34 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.32 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.26 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.25 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.25 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.23 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.23 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.23 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.22 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.22 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.22 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.21 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.21 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.21 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.19 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.19 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.17 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.15 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.14 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.13 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.09 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.08 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.05 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.04 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.02 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.98 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.93 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.92 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.89 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.86 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.83 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.8 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.79 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.79 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.78 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.76 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.74 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.73 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.64 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.62 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.5 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.49 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.48 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.45 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.43 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.43 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.42 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.41 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.41 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.41 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.39 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.36 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.29 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.25 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.22 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.2 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.17 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.13 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.12 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.11 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.08 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.07 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.93 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.89 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.87 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.66 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.63 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.62 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.6 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.55 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.53 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.5 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.47 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.38 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.37 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.36 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 96.28 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.25 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.21 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.17 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 95.93 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.9 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.89 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.86 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.85 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.8 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.74 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.71 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 95.66 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.66 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.64 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.56 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.55 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.54 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 95.48 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.48 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.38 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.32 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.3 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.27 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.23 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.23 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.18 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.17 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.17 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.13 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.1 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.03 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.03 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.99 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.98 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.96 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.94 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.94 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.93 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 94.89 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.89 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.84 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.83 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.8 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.8 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.77 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.74 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 94.71 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.7 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.62 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 94.62 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 94.52 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.49 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 94.42 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.37 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.36 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.35 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.34 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.34 | |
| d2g5ca1 | 110 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.31 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 94.3 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 94.29 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.28 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.2 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.2 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.14 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 94.12 | |
| d2f1ka1 | 114 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.06 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.99 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 93.98 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.96 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.93 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 93.85 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 93.56 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.41 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 93.39 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.35 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.34 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.28 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.25 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 93.24 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 93.05 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 92.99 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.98 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 92.96 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.95 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.89 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 92.75 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 92.72 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 92.7 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 92.7 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.7 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 92.64 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 92.64 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.62 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 92.54 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 92.51 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.49 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 92.45 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 92.4 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 92.39 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 92.3 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 92.17 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 92.16 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.15 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.06 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.02 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.92 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.91 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 91.85 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 91.84 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.76 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.75 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 91.64 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 91.64 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 91.62 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 91.59 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 91.57 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.57 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 91.48 | |
| d2pv7a1 | 128 | Prephenate dehydrogenase TyrA {Haemophilus influen | 91.47 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 91.39 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.36 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 91.26 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.18 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 91.17 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.04 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 91.01 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.93 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 90.93 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.77 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.71 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 90.48 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 90.31 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 90.21 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.11 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.01 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 89.77 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 89.71 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.35 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 89.2 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 89.17 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 89.12 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 88.9 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 88.8 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 88.54 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 88.42 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 88.41 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 88.31 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.09 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 87.92 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 87.83 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 87.66 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 87.6 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.56 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 87.49 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 87.42 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 87.27 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 87.14 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 87.05 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 87.02 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.78 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 86.67 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 86.55 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 86.49 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 86.49 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 86.41 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.36 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 86.26 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 86.25 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 85.47 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 84.9 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 84.65 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 84.54 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 84.14 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 84.12 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 84.09 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 84.08 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 83.93 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 83.83 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 83.44 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 83.38 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 83.31 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 83.04 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 82.7 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 82.29 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 82.13 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 82.0 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 81.96 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.87 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 81.02 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 80.64 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 80.18 |
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.97 E-value=1.5e-30 Score=219.55 Aligned_cols=151 Identities=26% Similarity=0.398 Sum_probs=139.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||||||+|+||++|+++|+++| +++++|+|++++.+.+++++|+ .+.++.++++++|+||+||||+++.+++++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~----~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~~ 76 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTP----HELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLKP 76 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSS----CEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTT
T ss_pred CEEEEEeccHHHHHHHHHHHhCC----CeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecchHhHHHHhhh
Confidence 78999999999999999999987 5999999999999998777888 788999999999999999999999998876
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKI 223 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~l 223 (341)
+ +++++|||+++|++++++++.++ .+.+ ++|+|||+|..+++|.+.++.+...++ ++.+.+++|
T Consensus 77 l-------~~~~~iis~~agi~~~~l~~~l~------~~~~-ivr~mPN~~~~v~~g~~~~~~~~~~~~--~~~~~v~~l 140 (152)
T d2ahra2 77 L-------HFKQPIISMAAGISLQRLATFVG------QDLP-LLRIMPNMNAQILQSSTALTGNALVSQ--ELQARVRDL 140 (152)
T ss_dssp S-------CCCSCEEECCTTCCHHHHHHHHC------TTSC-EEEEECCGGGGGTCEEEEEEECTTCCH--HHHHHHHHH
T ss_pred c-------ccceeEecccccccHHHHHhhhc------cccc-chhhccchhhhcCccceEEEeCCCCCH--HHHHHHHHH
Confidence 6 57889999999999999999998 5678 999999999999999999998887777 999999999
Q ss_pred HHhcCCeEEcCC
Q psy316 224 MEQGGIVEIIPE 235 (341)
Q Consensus 224 l~~lG~~~~v~e 235 (341)
|+.+|.+++++|
T Consensus 141 ~~~~G~~~~v~E 152 (152)
T d2ahra2 141 TDSFGSTFDISE 152 (152)
T ss_dssp HHTTEEEEECCG
T ss_pred HHhCCCEEEecC
Confidence 999999998865
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.96 E-value=2.8e-29 Score=211.47 Aligned_cols=151 Identities=26% Similarity=0.439 Sum_probs=134.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||||||+|+||++|+++|+++| +++|++|+|++++++.+++++|+ ...+.+ .+.++|+|||||||+++.+++++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~---~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~-~v~~~Div~lavkP~~~~~v~~~ 76 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQG---GYRIYIANRGAEKRERLEKELGVETSATLP-ELHSDDVLILAVKPQDMEAACKN 76 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC---SCEEEEECSSHHHHHHHHHHTCCEEESSCC-CCCTTSEEEECSCHHHHHHHHTT
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CCcEEEEeCChhHHHHhhhhcccccccccc-cccccceEEEecCHHHHHHhHHH
Confidence 78999999999999999999988 36999999999999999887888 555554 46789999999999999999988
Q ss_pred hhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKI 223 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~l 223 (341)
+ + ..+++|||+++|++++.+++.++ ...+ ++|+|||+|..+++|.+.++.++..++ ++.+.+++|
T Consensus 77 l-~-----~~~~~viS~~ag~~~~~l~~~l~------~~~~-iir~mpn~p~~~~~g~t~~~~~~~~~~--~~~~~v~~l 141 (152)
T d1yqga2 77 I-R-----TNGALVLSVAAGLSVGTLSRYLG------GTRR-IVRVMPNTPGKIGLGVSGMYAEAEVSE--TDRRIADRI 141 (152)
T ss_dssp C-C-----CTTCEEEECCTTCCHHHHHHHTT------SCCC-EEEEECCGGGGGTCEEEEEECCTTSCH--HHHHHHHHH
T ss_pred H-h-----hcccEEeecccCCCHHHHHHHhC------cCcc-eEeecccchhHhcCCcEEEEeCCCCCH--HHHHHHHHH
Confidence 7 4 34689999999999999999998 4678 999999999999999999998877777 899999999
Q ss_pred HHhcCCeEEcC
Q psy316 224 MEQGGIVEIIP 234 (341)
Q Consensus 224 l~~lG~~~~v~ 234 (341)
|+.+|.++|++
T Consensus 142 ~~~~G~~~~vd 152 (152)
T d1yqga2 142 MKSVGLTVWLD 152 (152)
T ss_dssp HHTTEEEEECS
T ss_pred HHhCCCEEEeC
Confidence 99999998874
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.90 E-value=1.3e-23 Score=166.85 Aligned_cols=100 Identities=25% Similarity=0.407 Sum_probs=96.8
Q ss_pred CCCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCC
Q psy316 234 PESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSP 313 (341)
Q Consensus 234 ~e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tp 313 (341)
+|+++|.+|+++||||||+++++++|++++++.|++++++++++.+++.|++.++.+ ++.+|.+|+++|+||
T Consensus 1 dE~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~Gs~~ll~~--------s~~~~~~L~~~V~Sp 72 (111)
T d1yqga1 1 DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQ--------TGEDFEKLQKNVTSK 72 (111)
T ss_dssp STTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH--------HCCCHHHHHHHTCCT
T ss_pred CHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHhcccCc
Confidence 578999999999999999999999999999999999999999999999999999988 889999999999999
Q ss_pred chHHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 314 GGSTIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 314 gG~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
||+|++||+.|++++|+..+.+|+++|+
T Consensus 73 gGtT~agl~~l~~~~~~~~i~~ai~aA~ 100 (111)
T d1yqga1 73 GGTTHEAVEAFRRHRVAEAISEGVCACV 100 (111)
T ss_dssp TSHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 9999999999999999999999999873
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.89 E-value=5.5e-23 Score=161.36 Aligned_cols=98 Identities=40% Similarity=0.644 Sum_probs=94.5
Q ss_pred CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCch
Q psy316 236 SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGG 315 (341)
Q Consensus 236 ~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG 315 (341)
+++|.+|+++||||||++.++++|.+++++.|++++++++++.+++.|++.++.+ ++.+|.+|+++|+||||
T Consensus 1 K~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~gs~~ll~~--------~~~~p~~l~~~V~SpgG 72 (104)
T d2ahra1 1 KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLASASNLKT--------SSQSPHDFIDAICSPGG 72 (104)
T ss_dssp GGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH--------SSSCHHHHHHHHCCTTS
T ss_pred CCcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHhccCCCh
Confidence 3689999999999999999999999999999999999999999999999999988 88999999999999999
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHhhC
Q psy316 316 STIAGIHALEKAGVRTPFSSAARRTK 341 (341)
Q Consensus 316 ~t~~~l~~l~~~~~~~~~~~a~~~a~ 341 (341)
+|++||+.|++.+|+..+.+|+++|+
T Consensus 73 tT~agl~~le~~~~~~~i~~a~~aA~ 98 (104)
T d2ahra1 73 TTIAGLMELERLGLTATVSSAIDKTI 98 (104)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChHHHHHHHHHHHH
Confidence 99999999999999999999999874
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.84 E-value=2.4e-20 Score=157.95 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=112.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|||+|+||++||++|.++|+ +|++|||++++++++++ .|. ...++.+.++++|+||+|||++.++++++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~----~V~~~d~~~~~~~~a~~-~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~ 75 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH----YLIGVSRQQSTCEKAVE-RQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLE 75 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC----EEEEEECCchHHHHHHH-hhccceeeeecccccccccccccCcHhhhhhhhh
Confidence 789999999999999999999995 99999999999888776 454 44566678999999999999999999999
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEEcCCch-----------hhhcCceEEEEeCC
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRVMPNTA-----------MKYGKGITGMCHDV 208 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~mpn~p-----------~~v~~g~~~l~~~~ 208 (341)
++ .+.+ +++++|+++ +++..... .+..+ + ++..+|... ..+.....++++..
T Consensus 76 ~l-~~~l--~~~~iv~~~-~s~~~~~~~~~~~~~~---------~-~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~ 141 (165)
T d2f1ka2 76 KL-IPHL--SPTAIVTDV-ASVKTAIAEPASQLWS---------G-FIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTE 141 (165)
T ss_dssp HH-GGGS--CTTCEEEEC-CSCCHHHHHHHHHHST---------T-CEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECT
T ss_pred hh-hhhc--ccccceeec-cccchHHHHHHHHhhc---------c-cccceeeecccccchhhhcccccCCCeEEEEeCC
Confidence 99 9998 888888877 44554333 23222 2 344444221 11223345677666
Q ss_pred CCCccHHHHHHHHHHHHhcCCeEE
Q psy316 209 HLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
..++ ++.+.+++||+.+|..++
T Consensus 142 ~~~~--~~~~~v~~l~~~lG~~v~ 163 (165)
T d2f1ka2 142 YTDP--EQLACLRSVLEPLGVKIY 163 (165)
T ss_dssp TCCH--HHHHHHHHHHGGGTCEEE
T ss_pred CCCH--HHHHHHHHHHHHhCCEEE
Confidence 6666 899999999999998764
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.79 E-value=2.9e-19 Score=150.88 Aligned_cols=147 Identities=14% Similarity=0.207 Sum_probs=111.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC-hHHHHHHH-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK-PQYLDSAI- 141 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~-~~~v~~vl- 141 (341)
|||||||+|+||.+||++|+++|+ +|++|||++++++.+.+ .+. ...++.++++++|+||+||| +.++++++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~----~V~~~d~~~~~~~~~~~-~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~ 75 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGY----SLVVSDRNPEAIADVIA-AGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL 75 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCC----eEEEEeCCcchhHHHHH-hhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHh
Confidence 689999999999999999999995 99999999999999887 477 78889999999999999997 67888888
Q ss_pred --HHhhhcccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEEEc-CCchhhhcCc-eEEEEeCCCCCccH
Q psy316 142 --QGLVNDKVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIRVM-PNTAMKYGKG-ITGMCHDVHLDKES 214 (341)
Q Consensus 142 --~~i~~~~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr~m-pn~p~~v~~g-~~~l~~~~~~~~~~ 214 (341)
..+ .+.+ +++++||++++ ++++.. .+.+.. .+.. ++.+. ...|.....| .++++.++ +
T Consensus 76 ~~~~~-~~~~--~~g~iiid~sT-~~p~~~~~~~~~~~~-----~g~~-~vdapv~gg~~~a~~g~l~~~~gG~---~-- 140 (161)
T d1vpda2 76 GENGI-IEGA--KPGTVLIDMSS-IAPLASREISDALKA-----KGVE-MLDAPVSGGEPKAIDGTLSVMVGGD---K-- 140 (161)
T ss_dssp STTCH-HHHC--CTTCEEEECSC-CCHHHHHHHHHHHHT-----TTCE-EEECCEESHHHHHHHTCEEEEEESC---H--
T ss_pred CCcch-hhcc--CCCCEEEECCC-CCHHHHHHHHHHHHH-----cCCc-eecccccCChhHHhcCCeEEEEcCC---H--
Confidence 345 6667 78999998854 555433 333331 2334 44331 1233333344 45666664 4
Q ss_pred HHHHHHHHHHHhcCCeE
Q psy316 215 EHLNMAIKIMEQGGIVE 231 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~ 231 (341)
+.++.++++|+.+|..+
T Consensus 141 ~~~~~~~~il~~~~~~i 157 (161)
T d1vpda2 141 AIFDKYYDLMKAMAGSV 157 (161)
T ss_dssp HHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHhcCce
Confidence 88999999999998753
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=2.4e-20 Score=155.91 Aligned_cols=148 Identities=14% Similarity=0.052 Sum_probs=101.3
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHHhhh
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVN 146 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~i~~ 146 (341)
|||||+|+||++|+++|.+.+ +.+.+|+|++++++++.++++....++.++++++|+||+||||+++.+++.++ .
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~----~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l-~ 76 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRY----EIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHL-N 76 (153)
T ss_dssp CEEESCCHHHHHHHHTTC--------CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTT-C
T ss_pred EEEEeCcHHHHHHHHHHHhCC----CEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhh-c
Confidence 799999999999999886644 24569999999999998865555567788899999999999999999998887 3
Q ss_pred cccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh--cCceEEEEeCCCCCccHHHHHHHHHHH
Q psy316 147 DKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY--GKGITGMCHDVHLDKESEHLNMAIKIM 224 (341)
Q Consensus 147 ~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v--~~g~~~l~~~~~~~~~~~~~~~v~~ll 224 (341)
.++++|||++++.+.+.++.... .... .++.+++..... ..+..+...++ + +.++.+++||
T Consensus 77 -----~~~~ivi~~s~~~~~~~l~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~gd---~--~~~~~~~~l~ 139 (153)
T d2i76a2 77 -----LGDAVLVHCSGFLSSEIFKKSGR------ASIH-PNFSFSSLEKALEMKDQIVFGLEGD---E--RGLPIVKKIA 139 (153)
T ss_dssp -----CSSCCEEECCSSSCGGGGCSSSE------EEEE-ECSCC--CTTGGGCGGGCCEEECCC---T--TTHHHHHHHH
T ss_pred -----ccceeeeecccchhhhhhhhhcc------ccce-eeeecccccchhhhccCcEEEEeCC---H--HHHHHHHHHH
Confidence 36889999999988876654332 1111 122222222221 22333333432 3 7789999999
Q ss_pred HhcCC-eEEcCCC
Q psy316 225 EQGGI-VEIIPES 236 (341)
Q Consensus 225 ~~lG~-~~~v~e~ 236 (341)
+.+|. +++++++
T Consensus 140 ~~lG~~~~~i~~e 152 (153)
T d2i76a2 140 EEISGKYFVIPSE 152 (153)
T ss_dssp HHHCSCEEECCGG
T ss_pred HHHCCcEEEeCCC
Confidence 99995 6677654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.76 E-value=6.4e-18 Score=143.27 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=112.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHH-hhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRI-IKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~-~~~aDvIilaV~~~~v~~v 140 (341)
+||+|||+|.||++||++|.++|+ ..+|++|||+++.++.+.+ .+. ...+..+. ..++|+||+|+|++.+.++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~--~~~I~~~D~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~v 78 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGF--KGKIYGYDINPESISKAVD-LGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI 78 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC--CSEEEEECSCHHHHHHHHH-TTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC--CeEEEEEECChHHHHHHHH-hhcchhhhhhhhhhhccccccccccCCchhhhhh
Confidence 479999999999999999999984 4589999999999888776 354 33444333 3579999999999999999
Q ss_pred HHHhhhcccccCCCcEEEEecCCCC--HHHHHHhccccCCCCCCCCeEEEEcCCc------hh-----hhcCceEEEEeC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVD--LETLKKKLSVLVPNPNDAPTIIRVMPNT------AM-----KYGKGITGMCHD 207 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~--~~~l~~~l~~~~~~~~~~~~vvr~mpn~------p~-----~v~~g~~~l~~~ 207 (341)
+.++ .+++ +++++|+++.+... .+.+++.++ .+ ++..+|.. +. .+.....++++.
T Consensus 79 l~~l-~~~~--~~~~ii~d~~s~k~~~~~~~~~~~~--------~~-~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~ 146 (171)
T d2g5ca2 79 AKKL-SYIL--SEDATVTDQGSVKGKLVYDLENILG--------KR-FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPT 146 (171)
T ss_dssp HHHH-HHHS--CTTCEEEECCSCCTHHHHHHHHHHG--------GG-EECEEEECCCSCCSGGGCCSSTTTTCEEEECCC
T ss_pred hhhh-hccc--cccccccccccccHHHHHHHHHhhc--------cc-ccccccccccccccHHHHHHHhhCCCeEEEecC
Confidence 9999 9988 88888888755333 345555555 13 55555521 11 122334567777
Q ss_pred CCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 208 VHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 208 ~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
...++ +..+.++++|+.+|..+.
T Consensus 147 ~~~~~--~~~~~v~~~~~~lG~~v~ 169 (171)
T d2g5ca2 147 KKTDK--KRLKLVKRVWEDVGGVVE 169 (171)
T ss_dssp SSSCH--HHHHHHHHHHHHTTCEEE
T ss_pred CCCCH--HHHHHHHHHHHHcCCEEE
Confidence 66666 889999999999997653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.72 E-value=1.9e-17 Score=139.70 Aligned_cols=147 Identities=15% Similarity=0.169 Sum_probs=109.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl~ 142 (341)
+||||||+|+||++||++|+++|+ +|++|||++++.+.+.+ .+. ...++.+.+..+|+|++||++ +++++++.
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~----~v~~~d~~~~~~~~~~~-~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGY----LLNVFDLVQSAVDGLVA-AGASAARSARDAVQGADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEECSSHHHHHHHHH-TTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCC----eEEEEECchhhhhhhhh-hhccccchhhhhccccCeeeecccchhhHHHHHh
Confidence 689999999999999999999995 99999999999998877 476 777889999999999999985 56777775
Q ss_pred H---hhhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEEE-cCCchhhhcCce-EEEEeCCCCCccH
Q psy316 143 G---LVNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGI-TGMCHDVHLDKES 214 (341)
Q Consensus 143 ~---i~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~-~~l~~~~~~~~~~ 214 (341)
. + .+.+ .++++||+++ .++++. +.+.+.. .+.. ++.+ +-..|.....|. +++..++ +
T Consensus 77 ~~~~~-~~~l--~~g~iiid~s-t~~p~~~~~~~~~~~~-----~gi~-~~dapv~Gg~~~a~~G~l~~~~gG~---~-- 141 (162)
T d3cuma2 77 DDDGL-LAHI--APGTLVLECS-TIAPTSARKIHAAARE-----RGLA-MLDAPVSGGTAGAAAGTLTFMVGGD---A-- 141 (162)
T ss_dssp STTCH-HHHS--CTTCEEEECS-CCCHHHHHHHHHHHHH-----TTCE-EEECCEESCHHHHHHTCEEEEEESC---H--
T ss_pred ccccc-cccC--CCCCEEEECC-CCCHHHHHHHHHHHHH-----CCCc-EEecccccCccccccCCeEEEecCC---H--
Confidence 4 4 5556 7899999874 455543 3344431 2334 4432 113444445554 5666664 4
Q ss_pred HHHHHHHHHHHhcCCeE
Q psy316 215 EHLNMAIKIMEQGGIVE 231 (341)
Q Consensus 215 ~~~~~v~~ll~~lG~~~ 231 (341)
+.++.++++|+.+|..+
T Consensus 142 ~~~~~~~~il~~~~~~v 158 (162)
T d3cuma2 142 EALEKARPLFEAMGRNI 158 (162)
T ss_dssp HHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHcCcc
Confidence 88999999999999753
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.68 E-value=4.1e-17 Score=139.48 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=108.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------Cc-cccChHHHhhcCCEEEEeeCh-H
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------DF-ALNDNHRIIKEAEYVFLAMKP-Q 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g~-~~~s~~e~~~~aDvIilaV~~-~ 135 (341)
.+|||||+|+||.+||++|+++|+ +|++|||++++.+.+.++. +. ...+..+.+..+|++|+++++ +
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~ 78 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGF----VVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQ 78 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCC----eEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchH
Confidence 579999999999999999999995 9999999999998876531 12 334556677789999999985 6
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHH---HHhccccCCCCCCCCeEEE-EcCCchhhhcCceEEEEeCCCCC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETL---KKKLSVLVPNPNDAPTIIR-VMPNTAMKYGKGITGMCHDVHLD 211 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l---~~~l~~~~~~~~~~~~vvr-~mpn~p~~v~~g~~~l~~~~~~~ 211 (341)
.+.+++.++ .+.+ +++++||++++ ++++.. .+.+.. .+.. ++. .+...+.....|.+++..++.
T Consensus 79 ~v~~v~~~l-~~~~--~~g~iiid~sT-~~~~~~~~~~~~~~~-----~g~~-~ldapvsGg~~~A~~G~~~~~gG~~-- 146 (176)
T d2pgda2 79 AVDNFIEKL-VPLL--DIGDIIIDGGN-SEYRDTMRRCRDLKD-----KGIL-FVGSGVSGGEDGARYGPSLMPGGNK-- 146 (176)
T ss_dssp HHHHHHHHH-HHHC--CTTCEEEECSC-CCHHHHHHHHHHHHH-----TTCE-EEEEEEESHHHHHHHCCEEEEEECT--
T ss_pred HHHHHHHHH-Hhcc--ccCcEEEecCc-chhHHHHHHHHHHHh-----cCCc-eeccccccCcccccCCcEEEcCCCH--
Confidence 888999998 8888 89999998854 454432 233321 2334 333 233444444456666666653
Q ss_pred ccHHHHHHHHHHHHhcCCeE
Q psy316 212 KESEHLNMAIKIMEQGGIVE 231 (341)
Q Consensus 212 ~~~~~~~~v~~ll~~lG~~~ 231 (341)
+.++.++++|+.++..+
T Consensus 147 ---~~~~~~~~il~~~~~kv 163 (176)
T d2pgda2 147 ---EAWPHIKAIFQGIAAKV 163 (176)
T ss_dssp ---TTHHHHHHHHHHHSCBC
T ss_pred ---HHHHHHHHHHHHHhccc
Confidence 67899999999998765
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.67 E-value=7.1e-17 Score=134.64 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=102.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
|||||||+|+||++|+++|+++|+ +|++|++++.+..++..+ +. ...++.|+++++|+||+|||++...+++.+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~----~v~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~ 75 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGV----EVVTSLEGRSPSTIERAR-TVGVTETSEEDVYSCPVVISAVTPGVALGAARR 75 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC----EEEECCTTCCHHHHHHHH-HHTCEECCHHHHHTSSEEEECSCGGGHHHHHHH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCC----eEEEEcCchhHHHHHhhh-cccccccHHHHHhhcCeEEEEecCchHHHHHHh
Confidence 789999999999999999999995 999999887666655542 55 566789999999999999999998888888
Q ss_pred hhhcccccCCCcEEEEecCCCCH---HHHHHhccccCCCCCCCCeEEE-EcCCchhhhcCceEEEEeCCCCCccHHHHHH
Q psy316 144 LVNDKVTLNSSRCIISMLVGVDL---ETLKKKLSVLVPNPNDAPTIIR-VMPNTAMKYGKGITGMCHDVHLDKESEHLNM 219 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~agi~~---~~l~~~l~~~~~~~~~~~~vvr-~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~ 219 (341)
+ .+.+ ++++|++ +.++. ..+++.+. ... ++. .+...+...+.+...++.|+. . +.++
T Consensus 76 ~-~~~~----~~~~id~-st~~p~~~~~l~~~~~-------~~~-~~d~~v~g~~~~~~~~~~~~~~G~~--~--~~~~- 136 (152)
T d1i36a2 76 A-GRHV----RGIYVDI-NNISPETVRMASSLIE-------KGG-FVDAAIMGSVRRKGADIRIIASGRD--A--EEFM- 136 (152)
T ss_dssp H-HTTC----CSEEEEC-SCCCHHHHHHHHHHCS-------SSE-EEEEEECSCHHHHGGGCEEEEESTT--H--HHHH-
T ss_pred h-cccC----Cceeecc-CcCCHHHHHHHHHHHh-------ccC-CCcccccCCcccccCCcEEEEECCC--H--HHHH-
Confidence 7 6654 4678876 44454 45555555 223 332 222334455677777777753 2 3222
Q ss_pred HHHHHHhcCCeEE-cCC
Q psy316 220 AIKIMEQGGIVEI-IPE 235 (341)
Q Consensus 220 v~~ll~~lG~~~~-v~e 235 (341)
.|+.+|..+. +++
T Consensus 137 ---~l~~~g~~i~~~G~ 150 (152)
T d1i36a2 137 ---KLNRYGLNIEVRGR 150 (152)
T ss_dssp ---GGGGGTCEEEECSS
T ss_pred ---HHHHcCCeeeEcCC
Confidence 3678887654 454
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.59 E-value=1.1e-15 Score=132.22 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=110.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-----C--------Cc-cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-----M--------DF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-----~--------g~-~~~s~~e~~~~aDvIi 129 (341)
+.||+|||+|+||+++|..|.++| ++|++|.|+++.++.+.+. + ++ .+.++.++++++|+||
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~g----~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~ii 82 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKKC----REVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIIL 82 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTE----EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEE
T ss_pred eceEEEECCCHHHHHHHHHHHHcC----CeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEE
Confidence 357999999999999999999998 4999999999888766431 1 23 5567889999999999
Q ss_pred EeeChHHHHHHHHHhhhcc-----cccCCCcEEEEecCCCCHH-------HHHHhccccCCCCCCCCeEEEEcCCchhhh
Q psy316 130 LAMKPQYLDSAIQGLVNDK-----VTLNSSRCIISMLVGVDLE-------TLKKKLSVLVPNPNDAPTIIRVMPNTAMKY 197 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~~-----l~~~~~~iIVs~~agi~~~-------~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v 197 (341)
+|||.+.++++++++ .++ + +++..|++++.|+..+ .+.+.++ . .++.+-..|+.+.++
T Consensus 83 iavPs~~~~~~~~~~-~~~~~~~~~--~~~~~ii~~tKGie~~t~~~~seii~e~~~------~-~~~~vlsGP~~A~Ev 152 (189)
T d1n1ea2 83 FVIPTQFLRGFFEKS-GGNLIAYAK--EKQVPVLVCTKGIERSTLKFPAEIIGEFLP------S-PLLSVLAGPSFAIEV 152 (189)
T ss_dssp ECSCHHHHHHHHHHH-CHHHHHHHH--HHTCCEEECCCSCCTTTCCCHHHHHTTTSC------G-GGEEEEESSCCHHHH
T ss_pred EcCcHHHHHHHHHHH-Hhhhhhhhc--cCCcEEEEEECCCccCCccchhhHHHHHhc------c-cceEEEecCCcHHHH
Confidence 999999999999988 653 3 4567899999998643 2333344 2 231456789999888
Q ss_pred cCce-EEEEeCCCCCccHHHHHHHHHHHHhcCC
Q psy316 198 GKGI-TGMCHDVHLDKESEHLNMAIKIMEQGGI 229 (341)
Q Consensus 198 ~~g~-~~l~~~~~~~~~~~~~~~v~~ll~~lG~ 229 (341)
.+|. +.++... .+. +..+.++++|+.-..
T Consensus 153 ~~~~pt~~viAs-~~~--~~a~~i~~lfst~~~ 182 (189)
T d1n1ea2 153 ATGVFTCVSIAS-ADI--NVARRLQRIMSTGDR 182 (189)
T ss_dssp HTTCCEEEEEEC-SSH--HHHHHHHHHHSCTTS
T ss_pred HcCCCcEEEEEe-CCH--HHHHHHHHHhCCCCC
Confidence 7763 3333322 234 777889999976443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.57 E-value=7.2e-15 Score=125.22 Aligned_cols=149 Identities=12% Similarity=0.122 Sum_probs=104.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--------cccChHH---HhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--------ALNDNHR---IIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--------~~~s~~e---~~~~aDvIilaV 132 (341)
.|||||||+|+||.+|+++|+++|+ +|++|||++++++.+.++.+. ...+..+ .+..++.+++++
T Consensus 1 ~MkIGvIGlG~MG~~ma~~L~~~G~----~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (178)
T d1pgja2 1 SMDVGVVGLGVMGANLALNIAEKGF----KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV 76 (178)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred CCEEEEEeehHHHHHHHHHHHHCCC----eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence 3789999999999999999999995 999999999999988764321 1122222 345788888888
Q ss_pred Ch-HHHHHHHHHhhhcccccCCCcEEEEecCCCCHH---HHHHhccccCCCCCCCCeEEE-EcCCchhhhcCceEEEEeC
Q psy316 133 KP-QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLE---TLKKKLSVLVPNPNDAPTIIR-VMPNTAMKYGKGITGMCHD 207 (341)
Q Consensus 133 ~~-~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~---~l~~~l~~~~~~~~~~~~vvr-~mpn~p~~v~~g~~~l~~~ 207 (341)
++ ..+..++..+ ...+ .++++++++.+ ..++ .+.+.+.. .+.. ++. .+...+.....|.++++.+
T Consensus 77 ~~~~~~~~~~~~~-~~~~--~~~~iii~~st-~~~~~~~~~~~~l~~-----~~~~-~ldapv~g~~~~a~~g~~~mvgG 146 (178)
T d1pgja2 77 QAGAATDSTIEQL-KKVF--EKGDILVDTGN-AHFKDQGRRAQQLEA-----AGLR-FLGMGISGGEEGARKGPAFFPGG 146 (178)
T ss_dssp CCSHHHHHHHHHH-HHHC--CTTCEEEECCC-CCHHHHHHHHHHHHT-----TTCE-EEEEEEESHHHHHHHCCEEEEEE
T ss_pred cCcchhhhhhhhh-hhhc--cccceecccCc-cchhHHHHHHHHHhh-----ccee-EecccccCCcchhcCCcEEEeeC
Confidence 75 5677888887 7778 88999998754 4443 33444431 2333 333 2334444445566666666
Q ss_pred CCCCccHHHHHHHHHHHHhcCCeE
Q psy316 208 VHLDKESEHLNMAIKIMEQGGIVE 231 (341)
Q Consensus 208 ~~~~~~~~~~~~v~~ll~~lG~~~ 231 (341)
+ + +.++.++++|+.++..+
T Consensus 147 ~---~--~~~~~v~pil~~~~~~~ 165 (178)
T d1pgja2 147 T---L--SVWEEIRPIVEAAAAKA 165 (178)
T ss_dssp C---H--HHHHHHHHHHHHHSCBC
T ss_pred C---H--HHHHHHHHHHHHHhccc
Confidence 4 4 89999999999999754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.54 E-value=1.1e-14 Score=124.56 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=103.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC--hhhhhhcCcC-----CC-------c-cccChHHHhhcCCEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS--ERFKLHWPEP-----MD-------F-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~--~e~~~~l~~~-----~g-------~-~~~s~~e~~~~aDvIi 129 (341)
|||+|||+|+||+++|..|.++|+ +|++|.|. ++..+.+.+. ++ + ..+++.++++++|+||
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~----~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii 76 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGN----EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVL 76 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC----EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhh
Confidence 799999999999999999999984 99999984 4445554332 11 2 3567788899999999
Q ss_pred EeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC---------HHHHHHhccccCCCCCCCCeEEEEcCCchhhhcCc
Q psy316 130 LAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---------LETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGKG 200 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---------~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g 200 (341)
+|||++.++++++++ .+++ +++ .++.++.|+. .+.+.+..+. ....+++-..|+.+.++..|
T Consensus 77 ~avps~~~~~~~~~l-~~~l--~~~-~ii~~tkg~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vlsGP~~A~Ei~~~ 147 (180)
T d1txga2 77 LGVSTDGVLPVMSRI-LPYL--KDQ-YIVLISKGLIDFDNSVLTVPEAVWRLKHD-----LRERTVAITGPAIAREVAKR 147 (180)
T ss_dssp ECSCGGGHHHHHHHH-TTTC--CSC-EEEECCCSEEEETTEEEEHHHHHHTTSTT-----CGGGEEEEESSCCHHHHHTT
T ss_pred cccchhhhHHHHHhh-cccc--ccc-eecccccCccccccccccchHHHHhhhcc-----cccceeEEcCCccHHHHHcC
Confidence 999999999999999 9988 554 5555666642 1233333321 11221445679998888666
Q ss_pred e-EEE-EeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 201 I-TGM-CHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 201 ~-~~l-~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
. +.+ ..+. +. +..+.++++|+.=...++
T Consensus 148 ~pt~~vias~--~~--~~a~~i~~~f~~~~frvy 177 (180)
T d1txga2 148 MPTTVVFSSP--SE--SSANKMKEIFETEYFGVE 177 (180)
T ss_dssp CCEEEEEECS--CH--HHHHHHHHHHCBTTEEEE
T ss_pred CCcEEEEEcC--CH--HHHHHHHHHHCCCCEEEE
Confidence 3 333 3332 33 677888999875333333
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.54 E-value=4.3e-14 Score=117.20 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=100.9
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
.++||+||| +|+||++|+++|.++|+ +|++|||+++. ...+.+..+|++++++|+..+..++
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~----~V~~~d~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~v~ 70 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGY----PISILDREDWA-------------VAESILANADVVIVSVPINLTLETI 70 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC----CEEEECTTCGG-------------GHHHHHTTCSEEEECSCGGGHHHHH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCC----CcEeccccccc-------------ccchhhhhccccccccchhhheeee
Confidence 457999999 89999999999999995 99999997543 2345677899999999999999999
Q ss_pred HHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhh--cCce-EEEEeCCCCCccHHHHH
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKY--GKGI-TGMCHDVHLDKESEHLN 218 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v--~~g~-~~l~~~~~~~~~~~~~~ 218 (341)
.++ .+.+ +++++|+++ ++++.+..++.... ...+ ++..+|...... ..|. .+++.+. +. +.++
T Consensus 71 ~~~-~~~~--~~~~iiiD~-~Svk~~~~~~~~~~-----~~~~-~v~~hP~~Gp~~~~~~g~~~v~~~g~--~~--~~~~ 136 (152)
T d2pv7a2 71 ERL-KPYL--TENMLLADL-TSVKREPLAKMLEV-----HTGA-VLGLHPMFGADIASMAKQVVVRCDGR--FP--ERYE 136 (152)
T ss_dssp HHH-GGGC--CTTSEEEEC-CSCCHHHHHHHHHH-----CSSE-EEEEEECSCTTCSCCTTCEEEEEEEE--CG--GGTH
T ss_pred ecc-cccc--cCCceEEEe-cccCHHHHHHHHHH-----ccCC-EEEecccCCCcccccCCcEEEEecCC--CH--HHHH
Confidence 999 8888 889999987 45665544432221 1134 566666432222 2343 3444443 23 6789
Q ss_pred HHHHHHHhcCCeEE
Q psy316 219 MAIKIMEQGGIVEI 232 (341)
Q Consensus 219 ~v~~ll~~lG~~~~ 232 (341)
+++++|+.+|..++
T Consensus 137 ~~~~ll~~~Ga~v~ 150 (152)
T d2pv7a2 137 WLLEQIQIWGAKIY 150 (152)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCCEEE
Confidence 99999999998653
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.8e-14 Score=120.57 Aligned_cols=153 Identities=10% Similarity=0.142 Sum_probs=120.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC------------C----------------Cc-
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP------------M----------------DF- 113 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~------------~----------------g~- 113 (341)
|.+||+|||+|.||+.||..++.+|+ +|++||++++.+++..+. + .+
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~----~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~ 78 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGH----TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 78 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCC----cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcc
Confidence 56899999999999999999999995 999999998765532210 0 12
Q ss_pred cccChHHHhhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcC
Q psy316 114 ALNDNHRIIKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMP 191 (341)
Q Consensus 114 ~~~s~~e~~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mp 191 (341)
.+.+..+++.++|+|+-|++. ..-.+++.++ .+++ .++.++.|.++++++..+...+. ...+ ++..++
T Consensus 79 ~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l-~~~~--~~~~ilasnTS~l~i~~la~~~~------~p~r-~ig~Hf 148 (192)
T d1f0ya2 79 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRL-DKFA--AEHTIFASNTSSLQITSIANATT------RQDR-FAGLHF 148 (192)
T ss_dssp EESCHHHHTTSCSEEEECCCSCHHHHHHHHHHH-TTTS--CTTCEEEECCSSSCHHHHHTTSS------CGGG-EEEEEE
T ss_pred ccchhHhhhcccceehhhcccchhHHHHHHHHH-hhhc--ccCceeeccCcccccchhhhhcc------CHhH-EEeecc
Confidence 345667788999999999985 4456788999 8888 88999999999999999998877 4567 888877
Q ss_pred CchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 192 NTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 192 n~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
..|..... ..=+++++..++ +..+.+..+++.+|+...
T Consensus 149 fnP~~~~~-lVEIv~g~~T~~--~~i~~~~~~~~~lgk~pV 186 (192)
T d1f0ya2 149 FNPVPVMK-LVEVIKTPMTSQ--KTFESLVDFSKALGKHPV 186 (192)
T ss_dssp CSSTTTCC-EEEEECCTTCCH--HHHHHHHHHHHHTTCEEE
T ss_pred ccccCccc-EEEEcCCCCCCH--HHHHHHHHHHHHcCCEEE
Confidence 65654433 344677777777 999999999999998643
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.7e-14 Score=119.29 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=104.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------Cc-cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------DF-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------g~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
|||+|||+|+||+.++..|.++|+ +|++++|++++.+.+.... .. ...+..+....+|+||++||+.++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~ 76 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH----EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQV 76 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC----ceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccch
Confidence 799999999999999999999995 9999999988766544311 11 234556778899999999999999
Q ss_pred HHHHHHhhhcccccCCCcEEEEecCCCCHHH-HHHhccccCCCCCCCCeEEEEc--------CCchhhhcCceEEEEeCC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLVGVDLET-LKKKLSVLVPNPNDAPTIIRVM--------PNTAMKYGKGITGMCHDV 208 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~-l~~~l~~~~~~~~~~~~vvr~m--------pn~p~~v~~g~~~l~~~~ 208 (341)
+++++.+ .+.+ +++++|+++.+|+..++ +++ . ..+ ++... |+.-...+.|.+.+.+..
T Consensus 77 ~~~~~~l-~~~~--~~~~~Iv~~qNG~~~~~~l~~-~--------~~~-v~~g~~~~~~~~~~~~i~~~~~g~t~ig~~~ 143 (167)
T d1ks9a2 77 SDAVKSL-ASTL--PVTTPILLIHNGMGTIEELQN-I--------QQP-LLMGTTTHAARRDGNVIIHVANGITHIGPAR 143 (167)
T ss_dssp HHHHHHH-HTTS--CTTSCEEEECSSSCTTGGGTT-C--------CSC-EEEEEECCEEEEETTEEEEEECCCEEEEESS
T ss_pred HHHHHhh-cccc--CcccEEeeccCcccHHHHHhh-c--------CCc-EEEEEeeEeEEecCCEEEEeCCcCEEEeeCC
Confidence 9999999 9988 88999999999997543 222 1 123 33222 222223456666665543
Q ss_pred CCCccHHHHHHHHHHHHhc-CCeEE
Q psy316 209 HLDKESEHLNMAIKIMEQG-GIVEI 232 (341)
Q Consensus 209 ~~~~~~~~~~~v~~ll~~l-G~~~~ 232 (341)
.. . +..+.+.++|+.. ....|
T Consensus 144 ~~-~--~~~~~l~~~l~~a~~~~~W 165 (167)
T d1ks9a2 144 QQ-D--GDYSYLADILQTVLPDVAW 165 (167)
T ss_dssp GG-G--TTCTHHHHHHHTTSSCEEE
T ss_pred Cc-c--hhHHHHHHHHHhhCCCCcc
Confidence 22 2 4456678888654 34444
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=3.6e-14 Score=118.43 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=100.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHHHHh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAIQGL 144 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl~~i 144 (341)
||||||+|+||.+|+++|+++|+ +++|+|++++...+.++.+.. .+..+.+.++|++|+++|. ..+..+..++
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l 75 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFP-----TLVWNRTFEKALRHQEEFGSE-AVPLERVAEARVIFTCLPTTREVYEVAEAL 75 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSC-----EEEECSSTHHHHHHHHHHCCE-ECCGGGGGGCSEEEECCSSHHHHHHHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCC-----EEEEeCCHHHHHHHHHHcCCc-ccccccccceeEEEecccchhhhhhhhccc
Confidence 79999999999999999999883 568999988877766643332 2335667789999999984 6777777888
Q ss_pred hhcccccCCCcEEEEecCCCCHHH---HHHhccccCCCCCCCCeEEEE-cCCchhhhcCce-EEEEeCCCCCccHHHHHH
Q psy316 145 VNDKVTLNSSRCIISMLVGVDLET---LKKKLSVLVPNPNDAPTIIRV-MPNTAMKYGKGI-TGMCHDVHLDKESEHLNM 219 (341)
Q Consensus 145 ~~~~l~~~~~~iIVs~~agi~~~~---l~~~l~~~~~~~~~~~~vvr~-mpn~p~~v~~g~-~~l~~~~~~~~~~~~~~~ 219 (341)
.+.+ .+++++|.++ .++++. +.+.+.+ .+.. ++.+ +...|....+|. ++++.++ + +.++.
T Consensus 76 -~~~~--~~~~~iid~s-T~~p~~~~~~~~~~~~-----~gi~-~ldapVsGg~~~A~~G~L~~~vgG~---~--~~~~~ 140 (156)
T d2cvza2 76 -YPYL--REGTYWVDAT-SGEPEASRRLAERLRE-----KGVT-YLDAPVSGGTSGAEAGTLTVMLGGP---E--EAVER 140 (156)
T ss_dssp -TTTC--CTTEEEEECS-CCCHHHHHHHHHHHHT-----TTEE-EEECCEESHHHHHHHTCEEEEEESC---H--HHHHH
T ss_pred -cccc--cccccccccc-cCCHHHHHHHHHHHHH-----cCCe-EEeccccCchhhhccCCEEEEEeCC---H--HHHHH
Confidence 7777 7888998874 455543 3444431 2233 3322 224444445554 5666664 4 88999
Q ss_pred HHHHHHhcCCe-EEc
Q psy316 220 AIKIMEQGGIV-EII 233 (341)
Q Consensus 220 v~~ll~~lG~~-~~v 233 (341)
++++|+ ++.. +++
T Consensus 141 ~~p~L~-~~~~v~~~ 154 (156)
T d2cvza2 141 VRPFLA-YAKKVVHV 154 (156)
T ss_dssp HGGGCT-TEEEEEEE
T ss_pred HHHHHH-hcCcCEEe
Confidence 999995 6654 444
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.46 E-value=1.7e-13 Score=116.23 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--------------Cc-cccChHHHhhcCCEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--------------DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--------------g~-~~~s~~e~~~~aDvI 128 (341)
.+||+|||+|+||.++|..|.++|+ +|++|+|++++.+.+++.. .. .+.++.++++++|+|
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~i 76 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ----SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI 76 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEE
Confidence 3799999999999999999999995 9999999998888765421 11 356788999999999
Q ss_pred EEeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 129 FLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 129 ilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
|+|||++.++++++++ ++++ .++++|+.. +|..
T Consensus 77 ii~v~~~~~~~~~~~i-~~~l--~~~~~iv~~-~g~~ 109 (184)
T d1bg6a2 77 LIVVPAIHHASIAANI-ASYI--SEGQLIILN-PGAT 109 (184)
T ss_dssp EECSCGGGHHHHHHHH-GGGC--CTTCEEEES-SCCS
T ss_pred EEEEchhHHHHHHHHh-hhcc--CCCCEEEEe-CCCC
Confidence 9999999999999999 9999 888877744 4443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.45 E-value=3.4e-13 Score=115.86 Aligned_cols=151 Identities=11% Similarity=0.070 Sum_probs=116.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC----------CC-------------ccccChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP----------MD-------------FALNDNHRI 121 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~----------~g-------------~~~~s~~e~ 121 (341)
+||+|||+|.||+.||..++.+|+ +|+++|++++.+++..+. .+ +...+..+.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~----~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGT----PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD 80 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTC----CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc
Confidence 689999999999999999999995 999999998876543211 01 111222345
Q ss_pred hhcCCEEEEeeCh--HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhccccCCCCCCCCeEEEEcCCchhhhcC
Q psy316 122 IKEAEYVFLAMKP--QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLSVLVPNPNDAPTIIRVMPNTAMKYGK 199 (341)
Q Consensus 122 ~~~aDvIilaV~~--~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~~~~~~~~~~~~vvr~mpn~p~~v~~ 199 (341)
+.++|+||-|++- ..-++++.++ .++. .++.+|.|.+++++++.+.+.+. ...+ ++..++-.|.....
T Consensus 81 ~~~adlViEav~E~l~~K~~lf~~l-~~~~--~~~~IiaSnTS~l~i~~la~~~~------~p~r-~~g~Hf~nP~~~~~ 150 (186)
T d1wdka3 81 FGNVDLVVEAVVENPKVKQAVLAEV-ENHV--REDAILASNTSTISISLLAKALK------RPEN-FVGMHFFNPVHMMP 150 (186)
T ss_dssp GGGCSEEEECCCSCHHHHHHHHHHH-HTTS--CTTCEEEECCSSSCHHHHGGGCS------CGGG-EEEEECCSSTTTCC
T ss_pred ccccceeeeeecchHHHHHHHHHHH-Hhhc--CCCeeEEeccccccHHHHHHhcc------Cchh-eEeeccccCcccCC
Confidence 7899999999984 4556788999 8888 89999999999999999988887 4567 88888766665443
Q ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 200 GITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 200 g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
. .=++.++..++ +..+.+..+++.+|+...
T Consensus 151 l-VEiv~~~~T~~--~~~~~~~~~~~~lgk~pv 180 (186)
T d1wdka3 151 L-VEVIRGEKSSD--LAVATTVAYAKKMGKNPI 180 (186)
T ss_dssp E-EEEEECSSCCH--HHHHHHHHHHHHTTCEEE
T ss_pred e-EEECCCCCCCH--HHHHHHHHHHHHcCCEEE
Confidence 3 33466777777 899999999999999643
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.92 E-value=1.8e-10 Score=102.09 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=103.1
Q ss_pred CCCCCCeEEEEcccH--HHHHHHH------HHHhcCCCCCCeEEEEcCChhhh-hhcCc---------------------
Q psy316 60 HVPMWTKVGFIGAGN--MAQAVAT------SLIRTGLCIPAQIIASAPSERFK-LHWPE--------------------- 109 (341)
Q Consensus 60 ~~~m~~kIgiIG~G~--mG~aia~------~L~~~G~~~~~~V~v~~r~~e~~-~~l~~--------------------- 109 (341)
+..|-.+++++|+|. ||..|+. .+.+.| +.|++.|-++++. +.+.+
T Consensus 36 ~~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g----~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~ 111 (242)
T d2b0ja2 36 EIALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEP----GLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKEL 111 (242)
T ss_dssp GGGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSS----EEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTS
T ss_pred ccceeeeeeeeeecHHhhhhchhhhhccchhhhhcC----CeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhc
Confidence 344667788999986 7766655 355666 4788888776542 21110
Q ss_pred --------------CCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHHHHhhhcccccCCCcEEEEecCCCCHHH---HH
Q psy316 110 --------------PMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLET---LK 170 (341)
Q Consensus 110 --------------~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~---l~ 170 (341)
+.|+ .++|+.|+++++|+||+|||. +.+.++++++ .+++ +++++|++++ +++... +.
T Consensus 112 ~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I-~~~l--~~g~Iiid~S-Ti~~~~~~~l~ 187 (242)
T d2b0ja2 112 PKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKF-ADAI--PEGAIVTHAC-TIPTTKFAKIF 187 (242)
T ss_dssp CCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHH-GGGS--CTTCEEEECS-SSCHHHHHHHH
T ss_pred cCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHH-HhhC--CCCcEEEecC-CCcHHHHHHHH
Confidence 1245 568889999999999999975 6788999999 9999 8898988774 455544 33
Q ss_pred HhccccCCCCCCCCeEEEEcCCchhhhcCceEEEEeCCCCCccHHHHHHHHHHHHhcCCeEE
Q psy316 171 KKLSVLVPNPNDAPTIIRVMPNTAMKYGKGITGMCHDVHLDKESEHLNMAIKIMEQGGIVEI 232 (341)
Q Consensus 171 ~~l~~~~~~~~~~~~vvr~mpn~p~~v~~g~~~l~~~~~~~~~~~~~~~v~~ll~~lG~~~~ 232 (341)
+.+.. .+.+ ++..+|..+.. ..|.+.+..+ ..++ +.++.+.++|+++|+..+
T Consensus 188 e~l~~-----kgi~-vi~~hp~a~pe-~~g~~li~~~-~ase--E~iekv~elles~Gk~~~ 239 (242)
T d2b0ja2 188 KDLGR-----EDLN-ITSYHPGCVPE-MKGQVYIAEG-YASE--EAVNKLYEIGKIARGKAF 239 (242)
T ss_dssp HHTTC-----TTSE-EEECBCSSCTT-TCCCEEEEES-SSCH--HHHHHHHHHHHHHHSCEE
T ss_pred Hhccc-----CCCE-EECCCccCcCc-cccceEEecC-CCCH--HHHHHHHHHHHHHCCCeE
Confidence 44431 2334 55555533222 2343444443 3456 899999999999998644
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.83 E-value=8.2e-09 Score=88.84 Aligned_cols=96 Identities=11% Similarity=0.193 Sum_probs=69.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC------------------C-c-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM------------------D-F-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~------------------g-~-~~~s~~e~~~~ 124 (341)
|||+|||+|.+|.++|..|.++|+ +|++||.++++.+.+.+.. + . ..++..+++.+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~----~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 76 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGH----EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD 76 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT
T ss_pred CEEEEECCCHhHHHHHHHHHhCCC----cEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhh
Confidence 789999999999999999999995 9999999999988775320 1 2 44667888999
Q ss_pred CCEEEEeeCh----------HHHHHHHHHhhhcccc-cCCCcEEEEecCCCCH
Q psy316 125 AEYVFLAMKP----------QYLDSAIQGLVNDKVT-LNSSRCIISMLVGVDL 166 (341)
Q Consensus 125 aDvIilaV~~----------~~v~~vl~~i~~~~l~-~~~~~iIVs~~agi~~ 166 (341)
+|++|+|||. ..+..+++.+ ...+. ..++++||.- +.+++
T Consensus 77 ~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i-~~~~~~~~~~~liii~-STv~p 127 (202)
T d1mv8a2 77 SDVSFICVGTPSKKNGDLDLGYIETVCREI-GFAIREKSERHTVVVR-STVLP 127 (202)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHH-HHHHTTCCSCCEEEEC-SCCCT
T ss_pred CCEEEEecCccccccccccchhhhhhhhhh-hheeecccCCcceeec-cccCC
Confidence 9999999973 2345555554 33321 0466666643 44443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.63 E-value=1.5e-08 Score=84.05 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=59.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cccChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~s~~e~~~~aDvIilaV~~ 134 (341)
.++|.|||+|.||..++++|.+.|. .++++++|+.++++.+.+++|. ...+..+.+.++|+||.|+..
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~---~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss 94 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGV---RAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 94 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCC---SEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCC---cEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC
Confidence 4689999999999999999999984 5899999999999988887775 456777888999999999963
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.61 E-value=8.4e-08 Score=79.73 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=76.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
-.++|+|||+|.-|.+-|.+|.++|+ +|++--|... ..+...+ -|+.+.+.+|+++.+|+|.+.+|+..-.++.
T Consensus 15 k~k~IaViGYGsQG~AhAlNLrDSG~----~V~VGLr~gs~s~~~A~~-~Gf~v~~~~eA~~~aDiim~L~PD~~q~~vy 89 (182)
T d1np3a2 15 QGKKVAIIGYGSQGHAHACNLKDSGV----DVTVGLRSGSATVAKAEA-HGLKVADVKTAVAAADVVMILTPDEFQGRLY 89 (182)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTC----CEEEECCTTCHHHHHHHH-TTCEEECHHHHHHTCSEEEECSCHHHHHHHH
T ss_pred CCCEEEEEeeCcHhHHHHhhhhhcCC----CEEEEcCCCCccHHHHhh-hccccccHHHHhhhcCeeeeecchHHHHHHH
Confidence 35899999999999999999999996 8888877543 3444444 4775567899999999999999999888999
Q ss_pred H-HhhhcccccCCCcEEEEecCCCCH
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+ ++ .|++ ++++.+. ++-|..+
T Consensus 90 ~~~I-~p~l--k~g~~L~-FaHGfnI 111 (182)
T d1np3a2 90 KEEI-EPNL--KKGATLA-FAHGFSI 111 (182)
T ss_dssp HHHT-GGGC--CTTCEEE-ESCCHHH
T ss_pred HHhh-hhhc--CCCcEEE-EeccceE
Confidence 5 68 9999 8888766 4456543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=9.2e-08 Score=79.11 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=71.1
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCCCe-EEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGAGNMAQA-VATSLIRTGLCIPAQ-IIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~-V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
++||||||+|+||.. ....+.+.. ..+ +.++++++++++.+.+++++ ..++.++++++.|+|++|+|+....++
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~---~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~ 77 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAAS---DWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDV 77 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCS---SEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCC---CcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcccc
Confidence 479999999999976 455565543 234 45899999998888777788 777888888999999999998776666
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHHHHHhc
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLETLKKKL 173 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l 173 (341)
+... .. ..-++++-=--+.+.++..+..
T Consensus 78 ~~~a-l~----~gk~V~~EKPla~~~~e~~~l~ 105 (164)
T d1tlta1 78 VSTL-LN----AGVHVCVDKPLAENLRDAERLV 105 (164)
T ss_dssp HHHH-HH----TTCEEEEESSSCSSHHHHHHHH
T ss_pred cccc-cc----ccceeeccccccCCHHHHHHHH
Confidence 6554 21 1224555432234555555443
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.50 E-value=2.1e-07 Score=77.07 Aligned_cols=101 Identities=9% Similarity=0.112 Sum_probs=70.6
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccChHHHhh-cCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDNHRIIK-EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~-~aDvIilaV~~~~v~~v 140 (341)
+||||||+|.||.. ....|.+.+ ..++.++++++++++.+.+++++ .+.+.+++++ +.|+|++|+|+....++
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~ 78 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWP---DIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTL 78 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTST---TEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccccc
Confidence 68999999999976 455555543 35788999999999998887776 5667677665 67999999999877776
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHHHHHhc
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLETLKKKL 173 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l 173 (341)
+... .. ..-++++-=--+.+.++.++..
T Consensus 79 ~~~a-l~----~gk~V~~EKP~~~~~~e~~~l~ 106 (167)
T d1xeaa1 79 AAFF-LH----LGIPTFVDKPLAASAQECENLY 106 (167)
T ss_dssp HHHH-HH----TTCCEEEESCSCSSHHHHHHHH
T ss_pred cccc-cc----cccccccCCCCcCCHHHHHHHH
Confidence 6554 22 1223555432345566555543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.47 E-value=2.8e-07 Score=73.41 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=64.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cChH---HH-hhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---NDNH---RI-IKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s~~---e~-~~~aDvIilaV~~~ 135 (341)
|||.|+|+|.+|..+++.|.+.|+ +|.+.++++++++.+.++++. .. .+.. ++ ++++|.++.+++.+
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~----~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d 76 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGH----DIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE 76 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----CcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH
Confidence 789999999999999999999984 999999999999988765564 22 2221 11 46899999988876
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEe
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
...-.+..+ ...+ +..++|+-+
T Consensus 77 ~~N~~~~~~-~k~~--~~~~iI~~~ 98 (132)
T d1lssa_ 77 EVNLMSSLL-AKSY--GINKTIARI 98 (132)
T ss_dssp HHHHHHHHH-HHHT--TCCCEEEEC
T ss_pred HHHHHHHHH-HHHc--CCceEEEEe
Confidence 544333333 3345 556666544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.45 E-value=1.5e-07 Score=77.74 Aligned_cols=77 Identities=9% Similarity=0.164 Sum_probs=61.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c----c---cChHHHhhcCCEEEEeeCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A----L---NDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~----~---~s~~e~~~~aDvIilaV~~ 134 (341)
.++|.|||+|.||..+|+.|.++|+ +|+++||+.++++.++++++. . . ....+.+...|+++.++|.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~----~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 77 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI----KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPY 77 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC----EEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC----EEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccc
Confidence 3789999999999999999999994 999999999999999886652 1 1 1234557789999999987
Q ss_pred HHHHHHHHHh
Q psy316 135 QYLDSAIQGL 144 (341)
Q Consensus 135 ~~v~~vl~~i 144 (341)
.....+....
T Consensus 78 ~~~~~~~~~~ 87 (182)
T d1e5qa1 78 TFHATVIKSA 87 (182)
T ss_dssp GGHHHHHHHH
T ss_pred hhhhHHHHHH
Confidence 7655555443
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.45 E-value=1.4e-07 Score=79.82 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~v 140 (341)
..++|||||+|++|+.+++.+..-|. +|++|+|++.. ... ...+.++++++||+|++++|-. ....+
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~----~v~~~d~~~~~-------~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~l 109 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGA----QVRGFSRTPKE-------GPWRFTNSLEEALREARAAVCALPLNKHTRGL 109 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTC----EEEEECSSCCC-------SSSCCBSCSHHHHTTCSEEEECCCCSTTTTTC
T ss_pred cCceEEEeccccccccceeeeecccc----ccccccccccc-------cceeeeechhhhhhccchhhcccccccccccc
Confidence 46899999999999999999998885 99999987532 122 4467899999999999999842 33333
Q ss_pred H-HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+ .+. ...+ +++.++|++.-| ++.+.|.+.+.
T Consensus 110 i~~~~-l~~m--k~~ailIN~~RG~ivd~~aL~~aL~ 143 (181)
T d1qp8a1 110 VKYQH-LALM--AEDAVFVNVGRAEVLDRDGVLRILK 143 (181)
T ss_dssp BCHHH-HTTS--CTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred cccce-eeec--cccceEEeccccccccchhhhhhcc
Confidence 3 222 3345 789999998755 55667766665
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.40 E-value=5.6e-07 Score=75.56 Aligned_cols=101 Identities=10% Similarity=0.210 Sum_probs=70.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc-----cccChHHHhh--cCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF-----ALNDNHRIIK--EAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~-----~~~s~~e~~~--~aDvIilaV~~~ 135 (341)
++||||||+|.||...++.|.... ..+|. ++++++++++.+.+++++ ...+.+++++ +.|+|++|+|+.
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~---~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~ 77 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAP---NATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS 77 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCT---TEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCC---CCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccch
Confidence 468999999999999999987753 23554 789999988877665653 4578888875 589999999997
Q ss_pred HHHHHHHHhhhcccccCCCc-EEEEecCCCCHHHHHHhc
Q psy316 136 YLDSAIQGLVNDKVTLNSSR-CIISMLVGVDLETLKKKL 173 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~-iIVs~~agi~~~~l~~~l 173 (341)
.-.+.+... + ..++ +++-=--+.+.++.++..
T Consensus 78 ~h~~~~~~~----l--~~g~~v~~EKP~~~~~~e~~~l~ 110 (184)
T d1ydwa1 78 LHVEWAIKA----A--EKGKHILLEKPVAMNVTEFDKIV 110 (184)
T ss_dssp GHHHHHHHH----H--TTTCEEEECSSCSSSHHHHHHHH
T ss_pred hhcchhhhh----h--hccceeecccccccCHHHHHHHH
Confidence 766666544 2 3333 444322234566555543
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.38 E-value=8.2e-07 Score=74.48 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=70.4
Q ss_pred CeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc--cccChHHHhh--cCCEEEEeeChHHHH
Q psy316 65 TKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF--ALNDNHRIIK--EAEYVFLAMKPQYLD 138 (341)
Q Consensus 65 ~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~--~~~s~~e~~~--~aDvIilaV~~~~v~ 138 (341)
+||||||+|.+|.. .+..+.+.+. ..+| .++++++++++.+.++++. .+.+.+++++ +.|+|++|+|+....
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~--~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~ 81 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSH--LFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNL 81 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTT--TEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCC--CeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccc
Confidence 58999999999986 4666665331 1244 4899999999988776776 5688888876 579999999998777
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhc
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKL 173 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l 173 (341)
+++... .. ..-++++-=--+.+.+++.+..
T Consensus 82 ~~~~~a-l~----~gk~V~~EKPl~~~~~e~~~l~ 111 (181)
T d1zh8a1 82 PFIEKA-LR----KGVHVICEKPISTDVETGKKVV 111 (181)
T ss_dssp HHHHHH-HH----TTCEEEEESSSSSSHHHHHHHH
T ss_pred cccccc-cc----cchhhhcCCCCcCCHHHHHHHH
Confidence 777655 22 1224555432344566655543
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.37 E-value=2.7e-07 Score=75.22 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=65.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC-------cCCC-c--cccChHHHhhcCCEEEEe
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP-------EPMD-F--ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~-------~~~g-~--~~~s~~e~~~~aDvIila 131 (341)
+-.|||+|||+|++|..++..|+..|+ ..+|.++|+++++++... ...+ . ...+ .+.+++||+||++
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~--~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d-~~~~~~adivvit 79 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGI--AEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE-YSDCKDADLVVIT 79 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC-GGGGTTCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCC--CcEEEEeecccchhHHHHHHHhccccccCCceEeecc-HHHhccccEEEEe
Confidence 346799999999999999999999886 368999999987654211 1011 2 3334 3557899999998
Q ss_pred eC----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 MK----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V~----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
.. +. .++++.+++ ..+ .++.+++-.++.++
T Consensus 80 ag~~~~~g~~r~~l~~~N~~i~~~~~~~i-~~~---~p~aivivvtNPvd 125 (146)
T d1ez4a1 80 AGAPQKPGESRLDLVNKNLNILSSIVKPV-VDS---GFDGIFLVAANPVD 125 (146)
T ss_dssp CCC----------CHHHHHHHHHHHHHHH-HHT---TCCSEEEECSSSHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHH-hhc---CCCcEEEEeCCccH
Confidence 62 21 133444555 443 46778777777654
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.36 E-value=1.5e-06 Score=74.54 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=98.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCC--CCCCeEEEEcCCh-hhhhhcCcCCCc-----cccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGL--CIPAQIIASAPSE-RFKLHWPEPMDF-----ALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~--~~~~~V~v~~r~~-e~~~~l~~~~g~-----~~~s~~e~~~~aDvIilaV~~~ 135 (341)
.+||+|||+|.-|.+-|.+|.++|+ ...-+|.+--|.. ...++..+ .|. .+.+..|+++.+|+|.+.+|+.
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~-dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe 122 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARA-AGFSEENGTLGDMWETISGSDLVLLLISDS 122 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHH-TTCCGGGTCEEEHHHHHHTCSEEEECSCHH
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHH-cCCccCCCcccCHHHHHhhCCEEEEecchH
Confidence 3689999999999999999999662 0112566654432 23333333 354 2456789999999999999999
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHHh---ccccCCCCCCCCeEEEEcCCchhhh-------cC-----c
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKK---LSVLVPNPNDAPTIIRVMPNTAMKY-------GK-----G 200 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~---l~~~~~~~~~~~~vvr~mpn~p~~v-------~~-----g 200 (341)
.-.++.+++ .|++ ++++.+. .+-|..+...+.. .| .+.. ++-+-|-.|... |+ |
T Consensus 123 ~Q~~vy~~I-~p~L--k~G~~L~-FaHGFnI~~~~~~~~~~p------~dvd-VimVAPKgPGh~VR~~Y~~Gk~~~G~G 191 (226)
T d1qmga2 123 AQADNYEKV-FSHM--KPNSILG-LSHGFLLGHLQSLGQDFP------KNIS-VIAVCPKGMGPSVRRLYVQGKEVNGAG 191 (226)
T ss_dssp HHHHHHHHH-HHHS--CTTCEEE-ESSSHHHHHHHHHTCCCC------TTSE-EEEEEESSCHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHH-HHhc--CCCceee-ecchhhhhhceeeecccC------CCce-EEEECCCCCCchHHHHHHcccccCCCC
Confidence 999999999 9999 8998766 4466655433321 22 3445 555556555422 22 6
Q ss_pred eEEEEeC-CCCCccHHHHHHHHHHHHhcCCe
Q psy316 201 ITGMCHD-VHLDKESEHLNMAIKIMEQGGIV 230 (341)
Q Consensus 201 ~~~l~~~-~~~~~~~~~~~~v~~ll~~lG~~ 230 (341)
+..+..- .+.+- ...+....+...+|..
T Consensus 192 VP~LiAV~QD~sG--~A~~~alayA~aIG~g 220 (226)
T d1qmga2 192 INSSFAVHQDVDG--RATDVALGWSIALGSP 220 (226)
T ss_dssp CCEEEEEEECSSS--CHHHHHHHHHHHHTCS
T ss_pred ceeEEEEEECCCC--cHHHHHHHHHHhCCCC
Confidence 5443322 12333 4566666777777653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.35 E-value=7.7e-07 Score=70.65 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=54.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc---C---hHHH-hhcCCEEEEeeChH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN---D---NHRI-IKEAEYVFLAMKPQ 135 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~---s---~~e~-~~~aDvIilaV~~~ 135 (341)
+++.|||+|.+|..+++.|.+.|+ +|++++.++++++.+++. +. ... + +.++ +.++|.+|++++.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~----~vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~ 75 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGH----EVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIGAN 75 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC----CCEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC----eEEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEEcCch
Confidence 579999999999999999999994 999999999999999874 43 221 1 1222 67899999999865
Q ss_pred HHH
Q psy316 136 YLD 138 (341)
Q Consensus 136 ~v~ 138 (341)
...
T Consensus 76 ~~~ 78 (134)
T d2hmva1 76 IQA 78 (134)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.34 E-value=2.2e-07 Score=79.31 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChH-HHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQ-YLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~-~v~~v 140 (341)
..++|||||+|++|+.+++.+..-|. +|..|++...... ... .++ ...+.+++++.||+|++++|.. ....+
T Consensus 48 ~gktvgIiG~G~IG~~va~~l~~fg~----~v~~~d~~~~~~~-~~~-~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~l 121 (193)
T d1mx3a1 48 RGETLGIIGLGRVGQAVALRAKAFGF----NVLFYDPYLSDGV-ERA-LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 121 (193)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC----EEEEECTTSCTTH-HHH-HTCEECSSHHHHHHHCSEEEECCCCCTTCTTS
T ss_pred eCceEEEeccccccccceeeeecccc----ceeeccCcccccc-hhh-hccccccchhhccccCCEEEEeecccccchhh
Confidence 45799999999999999999988775 9999998643211 111 245 5668899999999999999842 22222
Q ss_pred H-HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
+ .+. ...+ +++.++|.++-|- +.+.|.+.+.
T Consensus 122 i~~~~-l~~m--k~~a~lIN~sRG~ivde~aL~~aL~ 155 (193)
T d1mx3a1 122 INDFT-VKQM--RQGAFLVNTARGGLVDEKALAQALK 155 (193)
T ss_dssp BSHHH-HTTS--CTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred hhHHH-Hhcc--CCCCeEEecCCceEEcHHHHHHHHH
Confidence 2 122 2345 7889999987553 4566666664
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.32 E-value=3.5e-07 Score=75.84 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred CeEEEE-cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC------c-cccChHHHhhcCCEEEEeeChHH
Q psy316 65 TKVGFI-GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD------F-ALNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 65 ~kIgiI-G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g------~-~~~s~~e~~~~aDvIilaV~~~~ 136 (341)
|||+|| |+|.||++||+.|.++|+ +|.+|+|++++++.+.++.+ . ...+........+....++....
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~----~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH----EIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEH 76 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC----EEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeec
Confidence 789999 889999999999999995 99999999999888766431 1 23344555667788888887765
Q ss_pred HHHHH
Q psy316 137 LDSAI 141 (341)
Q Consensus 137 v~~vl 141 (341)
..+.+
T Consensus 77 ~~~~~ 81 (212)
T d1jaya_ 77 AIDTA 81 (212)
T ss_dssp HHHHH
T ss_pred cchHH
Confidence 55544
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.26 E-value=2.9e-07 Score=78.07 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=74.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
.++|||||+|++|+.+++.|..-|. +|..|+|.......... .++ ...+..+.+++||+|++++|- ..-+.++
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~----~v~~~d~~~~~~~~~~~-~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li 118 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPFDV----HLHYTDRHRLPESVEKE-LNLTWHATREDMYPVCDVVTLNCPLHPETEHMI 118 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTC----EEEEECSSCCCHHHHHH-HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCB
T ss_pred ccceeeccccccchhhhhhhhccCc----eEEEEeecccccccccc-ccccccCCHHHHHHhccchhhcccccccchhhh
Confidence 5799999999999999999988775 89999986433222222 345 567889999999999999984 2333333
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
.+. ...+ +++.++|.++-| +..+.|.+.+.
T Consensus 119 ~~~~-l~~m--k~ga~lIN~aRG~ivd~~aL~~aL~ 151 (188)
T d2naca1 119 NDET-LKLF--KRGAYIVNTARGKLCDRDAVARALE 151 (188)
T ss_dssp SHHH-HTTS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred HHHH-HHhC--CCCCEEEecCchhhhhHHHHHHHHh
Confidence 222 3345 788999998755 44567777665
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.25 E-value=6.4e-07 Score=76.55 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=70.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
-.++|||||+|++|+.+++.+..-|. +|.+|++....... . .+....+..+++++||+|++++|- .....++
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg~----~V~~~d~~~~~~~~--~-~~~~~~~l~~~l~~sDii~~~~plt~~T~~li 114 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFGA----KVITYDIFRNPELE--K-KGYYVDSLDDLYKQADVISLHVPDVPANVHMI 114 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCHHHH--H-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCB
T ss_pred cCCeEEEecccccchhHHHhHhhhcc----cccccCcccccccc--c-ceeeeccccccccccccccccCCccccccccc
Confidence 35799999999999999999988775 99999976433221 1 123445788999999999999984 2222222
Q ss_pred -HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
++. ...+ +++.++|.++=| ++.+.|.+.+.
T Consensus 115 ~~~~-l~~m--k~~a~lIN~sRG~ivde~aL~~aL~ 147 (197)
T d1j4aa1 115 NDES-IAKM--KQDVVIVNVSRGPLVDTDAVIRGLD 147 (197)
T ss_dssp SHHH-HHHS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cHHH-Hhhh--CCccEEEecCchhhhhhHHHHHHHh
Confidence 122 2234 788899988654 34566666665
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.25 E-value=8.1e-07 Score=72.92 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=67.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-------C----c-cccChHHHhhcCCEEEE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-------D----F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-------g----~-~~~s~~e~~~~aDvIil 130 (341)
.++||+|||+|++|+.++..|...++ .++.++|.++++++....++ + . ...+.++.++++|+|++
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~---~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvi 82 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALREL---ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV 82 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC---ceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEE
Confidence 45799999999999999998888885 48999999886655332211 1 1 23455677899999999
Q ss_pred eeC----hH-----------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 131 AMK----PQ-----------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 131 aV~----~~-----------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+.. |. .++++++++ ..+ .++.+++..++.++
T Consensus 83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i-~~~---~p~aiviivsNPvd 134 (154)
T d1pzga1 83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI-KKY---CPKTFIIVVTNPLD 134 (154)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHH-HHH---CTTCEEEECCSSHH
T ss_pred ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHH-Hhc---CCCcEEEEeCCcHH
Confidence 761 11 245555666 554 46778887877765
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.23 E-value=8.9e-07 Score=72.02 Aligned_cols=96 Identities=20% Similarity=0.263 Sum_probs=65.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------CC--c-cccChHHHhhcCCEEEEeeC-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------MD--F-ALNDNHRIIKEAEYVFLAMK- 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~g--~-~~~s~~e~~~~aDvIilaV~- 133 (341)
+||+|||+|++|+.++..|+..|. ..++.++|+++++++....+ ++ . ...+..+.+++||+||++.-
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~--~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~ 79 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGV--ADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGN 79 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCC--CceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccc
Confidence 799999999999999999998885 35899999998875432211 11 2 22233566899999999842
Q ss_pred hH-------------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 134 PQ-------------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 134 ~~-------------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
+. .++++.+.+ ..+ .++.+++-.++.++.
T Consensus 80 ~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i-~~~---~p~aivivvtNPvD~ 127 (146)
T d1hyha1 80 IKLQQDNPTGDRFAELKFTSSMVQSVGTNL-KES---GFHGVLVVISNPVDV 127 (146)
T ss_dssp GGGTC-------CTTHHHHHHHHHHHHHHH-HHT---TCCSEEEECSSSHHH
T ss_pred cccccccCCccHHHHHHHHHHHHHHHHHHH-hhc---CCCeEEEEecCcHHH
Confidence 11 134444555 443 477788888787653
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=1.3e-06 Score=73.95 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=72.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~v 140 (341)
..++|||||+|++|..+++.+..-|. +|+.|++..... . ... ...+.+++++.||+|++++|- ..-..+
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~----~v~~~d~~~~~~----~-~~~~~~~~l~ell~~sDii~i~~plt~~T~~l 113 (188)
T d1sc6a1 43 RGKKLGIIGYGHIGTQLGILAESLGM----YVYFYDIENKLP----L-GNATQVQHLSDLLNMSDVVSLHVPENPSTKNM 113 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCCC----C-TTCEECSCHHHHHHHCSEEEECCCSSTTTTTC
T ss_pred cceEEEEeecccchhhhhhhcccccc----eEeeccccccch----h-hhhhhhhhHHHHHhhccceeecccCCcchhhh
Confidence 46799999999999999999988875 999999864321 1 122 456788999999999999983 333333
Q ss_pred H-HHhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 141 I-QGLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 141 l-~~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
+ ++. ...+ +++.++|.++-| ++.+.|.+.+.
T Consensus 114 i~~~~-l~~m--k~~a~lIN~aRG~lvde~aL~~aL~ 147 (188)
T d1sc6a1 114 MGAKE-ISLM--KPGSLLINASRGTVVDIPALADALA 147 (188)
T ss_dssp BCHHH-HHHS--CTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred ccHHH-HhhC--CCCCEEEEcCcHHhhhhHHHHHHHH
Confidence 3 222 2335 788999998755 44567777665
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.23 E-value=7.3e-07 Score=72.00 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=66.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC--------Cc-cccChHHHhhcCCEEEEee---
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM--------DF-ALNDNHRIIKEAEYVFLAM--- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~--------g~-~~~s~~e~~~~aDvIilaV--- 132 (341)
|||+|||+|++|+.++..|+..++ ..++.++|+++++++....++ .. ...+..+.+++||+|+++.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l--~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~ 78 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGF--AREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVP 78 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC--CCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccc
Confidence 799999999999999999998886 358999999987765322110 12 2333456789999999996
Q ss_pred -ChH----H--------HHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 133 -KPQ----Y--------LDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 133 -~~~----~--------v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
++. + ++++.+.+ .++ .++.+++-.++.+..
T Consensus 79 ~~~g~~r~dl~~~N~~I~~~i~~~i-~~~---~p~aivivvtNPvd~ 121 (140)
T d1a5za1 79 QKPGETRLQLLGRNARVMKEIARNV-SKY---APDSIVIVVTNPVDV 121 (140)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHH-HHH---CTTCEEEECSSSHHH
T ss_pred cCCCcchhhhhccccchHHHHHHHH-Hhc---CCCcEEEEeCCcHHH
Confidence 121 1 33444445 444 467788877777653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.22 E-value=2.4e-06 Score=69.51 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=66.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC-------cC--CCc-cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP-------EP--MDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~-------~~--~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
..||+|||+|++|+.++..|...++ ..++.++|+++++++... .. ... ...+..+.+++||+|+++.-
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l--~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGI--ADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCC--CceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 3699999999999999999999886 358999999987744211 11 123 33344577899999999752
Q ss_pred ----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+. .++++.+++ ..+ .++.+++-+++.++
T Consensus 84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i-~~~---~p~a~~ivvtNPvd 127 (148)
T d1ldna1 84 ANQKPGETRLDLVDKNIAIFRSIVESV-MAS---GFQGLFLVATNPVD 127 (148)
T ss_dssp CCCCTTTCSGGGHHHHHHHHHHHHHHH-HHH---TCCSEEEECSSSHH
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHH-Hhh---CCCceEEEecCccH
Confidence 11 134455555 554 36677777777665
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.22 E-value=7.7e-07 Score=71.94 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---------CCc--cccChHHHhhcCCEEEEee-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---------MDF--ALNDNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---------~g~--~~~s~~e~~~~aDvIilaV- 132 (341)
|||+|||+|++|++++..|...+. ..++.++|+++++++..... ... ...+..+.+++||+|+++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l--~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQL--ARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--CSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC--CceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEe
Confidence 689999999999999999999885 35899999988765422110 012 2234466789999999996
Q ss_pred ---ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 ---KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ---~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
++. .+.++.+.+ ..+ .++.+++-.++++.
T Consensus 79 ~~~~~g~~r~~l~~~N~~i~~~i~~~i-~~~---~p~aivivvtNPvd 122 (142)
T d1guza1 79 LPRKPGMTREDLLMKNAGIVKEVTDNI-MKH---SKNPIIIVVSNPLD 122 (142)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHH-HHH---CSSCEEEECCSSHH
T ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHh-hcc---CCCeEEEEecCChH
Confidence 221 134444555 444 46777777777655
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.21 E-value=2.8e-06 Score=68.64 Aligned_cols=95 Identities=16% Similarity=0.269 Sum_probs=64.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCc---CCC----ccccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPE---PMD----FALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~---~~g----~~~~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+|++|+.++..|...|.+ .++.++|+++++++. +.. .++ +...+..+.++++|+|+++.-
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~--~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag 78 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDV--DEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAG 78 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCC--SEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcC--ceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecc
Confidence 7999999999999999999988863 589999999877542 110 011 122223568999999998862
Q ss_pred ----h-----H-------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 ----P-----Q-------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ----~-----~-------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
| + .++++.+.+ .++ .++.+++..++.++
T Consensus 79 ~~~~~g~~r~~l~~~n~~i~~~i~~~i-~~~---~p~aivivvtNPvD 122 (142)
T d1ojua1 79 LARKPGMTRLDLAHKNAGIIKDIAKKI-VEN---APESKILVVTNPMD 122 (142)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHH-HTT---STTCEEEECSSSHH
T ss_pred ccCCCCCchHHHHHHhhHHHHHHHHHH-Hhh---CCCcEEEEecCChH
Confidence 1 1 122333444 433 46778888878655
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.21 E-value=3.5e-06 Score=70.19 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCeEEEEcccHHHHHH--HHHHHhcCCCCCCeEEEEcCChhhhhhcCc-------CC----Cc-cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAV--ATSLIRTGLCIPAQIIASAPSERFKLHWPE-------PM----DF-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~ai--a~~L~~~G~~~~~~V~v~~r~~e~~~~l~~-------~~----g~-~~~s~~e~~~~aDvIi 129 (341)
+|||+|||+|+.|..+ ...|+....+...+|.++|+++++++.... .+ .+ ..+|..+++++||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 3799999999999753 444554322234599999999988763211 11 23 4568889999999999
Q ss_pred EeeC
Q psy316 130 LAMK 133 (341)
Q Consensus 130 laV~ 133 (341)
.++.
T Consensus 82 ~~~~ 85 (171)
T d1obba1 82 NTAM 85 (171)
T ss_dssp ECCC
T ss_pred eecc
Confidence 9874
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.21 E-value=4.7e-07 Score=77.04 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=72.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
.++|||||+|++|+.+++.+..-|. +|.+|++.......... .+. ...+..++++.||+|++++|- ...+.++
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~fg~----~v~~~d~~~~~~~~~~~-~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li 121 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGFDM----DIDYFDTHRASSSDEAS-YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC----EEEEECSSCCCHHHHHH-HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred ccceEEeecccchHHHHHHHHhhcc----ccccccccccccchhhc-ccccccCCHHHHHhhCCeEEecCCCCchHhhee
Confidence 5799999999999999999888775 89999986443222222 123 456788999999999999984 2333333
Q ss_pred H-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
. +. ...+ +++.++|.++=| ++.+.|.+.+.
T Consensus 122 ~~~~-l~~m--k~~a~lIN~sRG~ivde~aL~~aL~ 154 (191)
T d1gdha1 122 NKAT-IKSL--PQGAIVVNTARGDLVDNELVVAALE 154 (191)
T ss_dssp SHHH-HTTS--CTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred cHHH-hhCc--CCccEEEecCCccchhhHHHHHHHH
Confidence 1 22 3345 789999998755 44566666554
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.19 E-value=2.1e-06 Score=70.86 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=66.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------CCc---cccChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------MDF---ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~g~---~~~s~~e~~~~aDvIilaV 132 (341)
+..||+|||+|++|+.++..|...|++ .++.++|+++++++..+.+ .+. ......+.+++||+|+++.
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~--~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLA--DELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCC--SEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCC--cEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence 467999999999999999999999973 5899999998765422111 111 2223356688999999975
Q ss_pred ----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 ----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+|. .++++..++ .++ .++.+++-+++.++
T Consensus 97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i-~~~---~p~aiiivvtNPvD 141 (160)
T d1i0za1 97 GVRQQEGESRLNLVQRNVNVFKFIIPQI-VKY---SPDCIIIVVSNPVD 141 (160)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHH-HHH---CTTCEEEECSSSHH
T ss_pred CCccccCcchHHHHHHHHHHHHHHHHHH-Hhc---CCCcEEEEeCCchH
Confidence 221 133444555 444 46778887877765
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.19 E-value=1e-06 Score=75.34 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=71.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..++|||||+|++|+.+++.|..-|. +|++|++.+.... . ......+.+++++.||+|++++|. ..-..++
T Consensus 44 ~~ktvgIiG~G~IG~~va~~l~~fg~----~v~~~d~~~~~~~---~-~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li 115 (199)
T d1dxya1 44 GQQTVGVMGTGHIGQVAIKLFKGFGA----KVIAYDPYPMKGD---H-PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHII 115 (199)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCCSSC---C-TTCEECCHHHHHHHCSEEEECCCCCGGGTTSB
T ss_pred cceeeeeeecccccccccccccccce----eeeccCCccchhh---h-cchhHHHHHHHHHhcccceeeecccccccccc
Confidence 35799999999999999999988785 9999998754321 1 122345788999999999999984 2222223
Q ss_pred -HHhhhcccccCCCcEEEEecCCC--CHHHHHHhcc
Q psy316 142 -QGLVNDKVTLNSSRCIISMLVGV--DLETLKKKLS 174 (341)
Q Consensus 142 -~~i~~~~l~~~~~~iIVs~~agi--~~~~l~~~l~ 174 (341)
++. ...+ +++.++|.++=|- +.+.|.+.+.
T Consensus 116 ~~~~-l~~m--k~~a~lIN~aRG~vvde~aL~~aL~ 148 (199)
T d1dxya1 116 NEAA-FNLM--KPGAIVINTARPNLIDTQAMLSNLK 148 (199)
T ss_dssp CHHH-HHHS--CTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred cHHH-hhcc--CCceEEEecccHhhhhhHHHHHHHh
Confidence 122 2235 7889999987553 3566666665
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.17 E-value=3.7e-06 Score=72.82 Aligned_cols=102 Identities=7% Similarity=0.088 Sum_probs=67.5
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc------cccChHHHhh--cCCEEEEee
Q psy316 63 MWTKVGFIGAGNMAQA-VATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF------ALNDNHRIIK--EAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~------~~~s~~e~~~--~aDvIilaV 132 (341)
.+.||||||+|+||.. +...+.... ..+|. +++|++++++.+.+++|+ .++|.+++++ +.|+|++|+
T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~~---~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGCQ---HSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCS---SEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhCC---CceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 3468999999999974 555554432 23554 899999999988776764 3567788776 589999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCc-EEEEecCCCCHHHHHHhc
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSR-CIISMLVGVDLETLKKKL 173 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~-iIVs~~agi~~~~l~~~l 173 (341)
|++...+++... + ..++ +++----+.+.++..+..
T Consensus 109 p~~~H~~~~~~a----l--~~gk~v~~EKPla~~~~e~~~l~ 144 (221)
T d1h6da1 109 PNSLHAEFAIRA----F--KAGKHVMCEKPMATSVADCQRMI 144 (221)
T ss_dssp CGGGHHHHHHHH----H--HTTCEEEECSSCCSSHHHHHHHH
T ss_pred chhhhhhHHHHh----h--hcchhhhcCCCccCCHHHHHHHH
Confidence 998766665444 2 2333 444322234556555543
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.15 E-value=1.1e-06 Score=74.12 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=72.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeCh-HHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKP-QYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~-~~v~~vl 141 (341)
..+++||||+|++|+.+++.+..-|. +|+.|+|+....... . .++...+.++++++||+|++++|- ...+.++
T Consensus 43 ~~k~vgiiG~G~IG~~va~~~~~fg~----~v~~~d~~~~~~~~~-~-~~~~~~~l~ell~~sDiv~~~~Plt~~T~~li 116 (184)
T d1ygya1 43 FGKTVGVVGLGRIGQLVAQRIAAFGA----YVVAYDPYVSPARAA-Q-LGIELLSLDDLLARADFISVHLPKTPETAGLI 116 (184)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTC----EEEEECTTSCHHHHH-H-HTCEECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred cceeeeeccccchhHHHHHHhhhccc----eEEeecCCCChhHHh-h-cCceeccHHHHHhhCCEEEEcCCCCchhhhhh
Confidence 45789999999999999998877664 899999865432221 1 233345788999999999999984 3333333
Q ss_pred H-HhhhcccccCCCcEEEEecCC--CCHHHHHHhcc
Q psy316 142 Q-GLVNDKVTLNSSRCIISMLVG--VDLETLKKKLS 174 (341)
Q Consensus 142 ~-~i~~~~l~~~~~~iIVs~~ag--i~~~~l~~~l~ 174 (341)
. +. ...+ +++.++|.++=| +..+.|.+.+.
T Consensus 117 n~~~-l~~m--k~~a~lIN~sRG~iVde~aL~~aL~ 149 (184)
T d1ygya1 117 DKEA-LAKT--KPGVIIVNAARGGLVDEAALADAIT 149 (184)
T ss_dssp CHHH-HTTS--CTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred hHHH-Hhhh--CCCceEEEecchhhhhhHHHHHHHh
Confidence 2 22 2345 788999998755 34566766665
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.14 E-value=1.3e-06 Score=72.49 Aligned_cols=84 Identities=12% Similarity=0.189 Sum_probs=58.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
++||||||+|+||+.+++.|.+.. ..++ .+++|+++.... .+. ...+..+...+.|+|++|+|+....++.
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~~---~~elvav~~~~~~~~~~----~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a 75 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQP---DMDLVGIFSRRATLDTK----TPVFDVADVDKHADDVDVLFLCMGSATDIPEQ 75 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCS---SEEEEEEEESSSCCSSS----SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHH
T ss_pred cceEEEECChHHHHHHHHHHHhCC---CcEEEEEEecccccccc----cccccchhhhhhccccceEEEeCCCcccHHHH
Confidence 368999999999999999987653 2344 478888654322 344 4555666678999999999998766665
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
... + ..|+-+|.+
T Consensus 76 ~~a----L--~aG~~vv~~ 88 (170)
T d1f06a1 76 APK----F--AQFACTVDT 88 (170)
T ss_dssp HHH----H--TTTSEEECC
T ss_pred HHH----H--HCCCcEEEe
Confidence 443 4 556555543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.13 E-value=1.7e-06 Score=73.32 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=50.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-----------------Cc-cccChHHHhhcCC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-----------------DF-ALNDNHRIIKEAE 126 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-----------------g~-~~~s~~e~~~~aD 126 (341)
|||+|||+|.+|..+|..+ +.| ++|+++|.++++.+.+++.. .. ...+......++|
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g----~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQ----NEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAE 75 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTT----SEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCS
T ss_pred CEEEEECCChhHHHHHHHH-HCC----CcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccc
Confidence 7899999999999999766 567 49999999999988776421 11 2234455678999
Q ss_pred EEEEeeC
Q psy316 127 YVFLAMK 133 (341)
Q Consensus 127 vIilaV~ 133 (341)
+|++|||
T Consensus 76 ii~v~vp 82 (196)
T d1dlja2 76 LVIIATP 82 (196)
T ss_dssp EEEECCC
T ss_pred cccccCC
Confidence 9999997
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.09 E-value=5.3e-06 Score=67.03 Aligned_cols=95 Identities=21% Similarity=0.280 Sum_probs=64.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCc---CCCc---cccChHHHhhcCCEEEEee--
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPE---PMDF---ALNDNHRIIKEAEYVFLAM-- 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~---~~g~---~~~s~~e~~~~aDvIilaV-- 132 (341)
.||+|||+|++|+++|..|...|++ .++.++|+++++++. +.. ..+. ...+..+.+++||+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~--~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~ 79 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIA--REIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP 79 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCC--SEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC--cEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccc
Confidence 5899999999999999999999863 589999999876542 111 1111 2233456688999999986
Q ss_pred --Ch-HH-----------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 --KP-QY-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 --~~-~~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+| +. ++++..++ .++ .++.+++-+++.++
T Consensus 80 ~~~~g~~R~dl~~~N~~i~~~i~~~i-~~~---~p~ai~ivvtNPvD 122 (143)
T d1llda1 80 RQKPGQSRLELVGATVNILKAIMPNL-VKV---APNAIYMLITNPVD 122 (143)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHH-HHH---CTTSEEEECCSSHH
T ss_pred ccCCCCchhhhhhhhHHHHHHHHHHH-Hhh---CCCeEEEEeCCchH
Confidence 22 11 23333444 444 46677777777665
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.08 E-value=2e-06 Score=69.52 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=59.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cCcC--C-C-c-cccChHHHhhcCCEEEEee--C
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WPEP--M-D-F-ALNDNHRIIKEAEYVFLAM--K 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~~~--~-g-~-~~~s~~e~~~~aDvIilaV--~ 133 (341)
.||+|||+|++|+.++..|...++ ..++.++|+++++++. |..- + + . ......+.+++||+|+++. +
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l--~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~ 79 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQT--ANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 79 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC--SSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence 689999999999999999999886 3589999998876442 2210 1 1 1 2233356688999999984 2
Q ss_pred --hHH------------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 --PQY------------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 --~~~------------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+.. ++++.+.+ ..+ .++.+++-.++.++
T Consensus 80 ~~~~~~r~~l~~~N~~i~~~i~~~i-~~~---~p~ai~ivvtNPvd 121 (142)
T d1y6ja1 80 RKPGETRLDLAKKNVMIAKEVTQNI-MKY---YNHGVILVVSNPVD 121 (142)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH-HHH---CCSCEEEECSSSHH
T ss_pred cCcCcchhHHhhHHHHHHHHHHHHh-hcc---CCCceEEEecChHH
Confidence 211 22333444 443 46677777777665
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.05 E-value=3.2e-06 Score=68.91 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------Cc--cccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------DF--ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g~--~~~s~~e~~~~aDvIilaV 132 (341)
+.||+|||+|++|+.++..|...++ .++.++|+++++++..+.++ .. ...+..+.++++|+|+++.
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l---~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvita 79 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNL---GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTA 79 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEec
Confidence 4699999999999999988888774 58999999887655332111 11 2234456789999999986
Q ss_pred C----hH-----------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 K----PQ-----------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ~----~~-----------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
- |. .++++.+++ +.+ .++.+++-.++.++
T Consensus 80 g~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i-~~~---~p~aivivvtNPvD 129 (150)
T d1t2da1 80 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI-KKN---CPNAFIIVVTNPVD 129 (150)
T ss_dssp SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHH-HHH---CTTSEEEECSSSHH
T ss_pred ccccCCCCCccccchhHHHHHHHHHHHHHHHHH-Hhc---CCCeEEEEecCchH
Confidence 2 21 234455555 554 46778887877765
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=2e-06 Score=70.89 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=63.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhh----cC---cCCCc---cccChHHHhhcCCEEEEeeC-
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLH----WP---EPMDF---ALNDNHRIIKEAEYVFLAMK- 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~----l~---~~~g~---~~~s~~e~~~~aDvIilaV~- 133 (341)
.||+|||+|++|+.+|..|...|+ ..++.++|+++++++. |. ...+. ...+..+.+++||+|+++.-
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l--~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag~ 97 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGL--ADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAGA 97 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTS--CSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCSC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEeccc
Confidence 489999999999999999999986 3589999999876542 21 11121 22333566789999998861
Q ss_pred ---hH--------HHHHHHHHhhhcccc-cCCCcEEEEecCCCC
Q psy316 134 ---PQ--------YLDSAIQGLVNDKVT-LNSSRCIISMLVGVD 165 (341)
Q Consensus 134 ---~~--------~v~~vl~~i~~~~l~-~~~~~iIVs~~agi~ 165 (341)
+. .-.++++++ .+.+. ..++.+++..++.++
T Consensus 98 ~~~~~~~R~dll~~N~~i~~~i-~~~i~~~~p~~ivivvtNPvD 140 (159)
T d2ldxa1 98 RMVSGQTRLDLLQRNVAIMKAI-VPGVIQNSPDCKIIVVTNPVD 140 (159)
T ss_dssp CCCTTTCSSCTTHHHHHHHHHH-TTTHHHHSTTCEEEECSSSHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHH-HHHHhccCCCeEEEEeCCcHH
Confidence 21 112333333 22210 046778888877665
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.98 E-value=1.5e-05 Score=65.96 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=67.3
Q ss_pred CCeEEEEcccHHHH--HHHHHHHhcCCCCCCeEEEEcCChhh--hhhcCc-------CCC--c---cccChHHHhhcCCE
Q psy316 64 WTKVGFIGAGNMAQ--AVATSLIRTGLCIPAQIIASAPSERF--KLHWPE-------PMD--F---ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~G~mG~--aia~~L~~~G~~~~~~V~v~~r~~e~--~~~l~~-------~~g--~---~~~s~~e~~~~aDv 127 (341)
+|||+|||+|+.|. .++.-+.....++..+|.++|+++++ ++.+.. +++ . .+++..+.+++||+
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDv 80 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 80 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCE
Confidence 47999999997764 44444443322223589999998743 332211 112 2 45677888999999
Q ss_pred EEEeeChH------------------------------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHH
Q psy316 128 VFLAMKPQ------------------------------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETL 169 (341)
Q Consensus 128 IilaV~~~------------------------------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l 169 (341)
||++.... .++++++.+ ..+ .|+.+++..+|+++. ..+
T Consensus 81 Vv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i-~~~---~pda~~i~vtNPvdv~t~~~ 156 (169)
T d1s6ya1 81 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDM-EEL---CPDAWLINFTNPAGMVTEAV 156 (169)
T ss_dssp EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHH-HHH---CTTCEEEECSSSHHHHHHHH
T ss_pred EEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHH-hhc---CCCeEEEEeCChHHHHHHHH
Confidence 99998421 145556666 554 478888888887663 334
Q ss_pred HHhcc
Q psy316 170 KKKLS 174 (341)
Q Consensus 170 ~~~l~ 174 (341)
.+.+|
T Consensus 157 ~k~~p 161 (169)
T d1s6ya1 157 LRYTK 161 (169)
T ss_dssp HHHCC
T ss_pred HHHCC
Confidence 45554
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.93 E-value=8.8e-06 Score=65.55 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC---------C--ccccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM---------D--FALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~---------g--~~~~s~~e~~~~aDvIilaV 132 (341)
.+||+|||+|++|+++|..|...++ .++.++|+++++++....++ . +...+..+.+.++|+||++.
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~~l---~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvita 77 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAKEL---GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTS 77 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC---SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCc---ceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEee
Confidence 3699999999999999999988885 47999999876644322111 1 11122345678999999997
Q ss_pred C----hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 K----PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ~----~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
- |. .++++++++ ..+ .++.+++-.++.++
T Consensus 78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i-~k~---~p~aivivvtNPvD 122 (142)
T d1uxja1 78 GAPRKPGMSREDLIKVNADITRACISQA-APL---SPNAVIIMVNNPLD 122 (142)
T ss_dssp SCC---------CHHHHHHHHHHHHHHH-GGG---CTTCEEEECSSSHH
T ss_pred eccCCcCcchhHHHhHHHHHHHHHHHHH-hcc---CCCceEEEeCCchH
Confidence 2 21 123444555 444 46777777777655
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.92 E-value=1.3e-05 Score=64.77 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=65.2
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-----C---c-cccChHHHhhcCCEEEEeeC--
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-----D---F-ALNDNHRIIKEAEYVFLAMK-- 133 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-----g---~-~~~s~~e~~~~aDvIilaV~-- 133 (341)
||+|||+ |++|++++..|...+++ .++.++|.++.+.+.+.-+. . . ...+..+.+++||+|+++--
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~--~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~ 79 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLV--SRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTC--SEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCcc--ceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence 8999995 99999999999988863 58999999876554321111 1 1 23455677899999998841
Q ss_pred --h------------HHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 134 --P------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 134 --~------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+ ..++++.+.+ .++ .++.+++-+++.++
T Consensus 80 ~~~g~sR~~ll~~N~~i~~~i~~~i-~~~---~p~~iiivvtNPvD 121 (144)
T d1mlda1 80 RKPGMTRDDLFNTNATIVATLTAAC-AQH---CPDAMICIISNPVN 121 (144)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHH-HHH---CTTSEEEECSSCHH
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHH-Hhc---CCCeEEEEecCchh
Confidence 2 1244555566 554 46778887878766
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.89 E-value=1.2e-05 Score=66.50 Aligned_cols=107 Identities=7% Similarity=0.061 Sum_probs=69.0
Q ss_pred CCeEEEEcccHHHHHHH-HHHHhc-CCCCCCeEEEEcCChhhhhhcCcC-------CC----c-cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGAGNMAQAVA-TSLIRT-GLCIPAQIIASAPSERFKLHWPEP-------MD----F-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia-~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~-------~g----~-~~~s~~e~~~~aDvIi 129 (341)
..||+|||+|..|...+ ..++.. -.++..+|.++|.++++++..... .+ + ..++..+++++||+||
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 46899999999887533 344432 111224899999999887632210 11 2 4567789999999999
Q ss_pred EeeCh------------------------------------HHHHHHHHHhhhcccccCCCcEEEEecCCCCH--HHHHH
Q psy316 130 LAMKP------------------------------------QYLDSAIQGLVNDKVTLNSSRCIISMLVGVDL--ETLKK 171 (341)
Q Consensus 130 laV~~------------------------------------~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~--~~l~~ 171 (341)
++.-+ ..+.++++.+ ..+ .|+.+++..++++.. ..+.+
T Consensus 83 itag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i-~~~---~P~A~li~~TNPvdv~t~~~~k 158 (167)
T d1u8xx1 83 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYM-EKY---SPDAWMLNYSNPAAIVAEATRR 158 (167)
T ss_dssp ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHH-HHH---CTTCEEEECCSCHHHHHHHHHH
T ss_pred ECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHH-Hhh---CCCeEEEEeCCHHHHHHHHHHH
Confidence 99742 2234455555 544 477888888887663 34455
Q ss_pred hcc
Q psy316 172 KLS 174 (341)
Q Consensus 172 ~l~ 174 (341)
++|
T Consensus 159 ~~P 161 (167)
T d1u8xx1 159 LRP 161 (167)
T ss_dssp HST
T ss_pred HCC
Confidence 555
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.86 E-value=2.7e-05 Score=63.04 Aligned_cols=96 Identities=10% Similarity=0.092 Sum_probs=59.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCCh--hhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSE--RFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~--e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
|||||||+ |-.|+-+.+.|+++...+..++.....+. .+.-.+..+... ......+..+++|++|+|+|...-.++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~ 80 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKV 80 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHH
Confidence 68999987 99999999988875432334555433221 111111111111 112234557899999999999988888
Q ss_pred HHHhhhcccccCCCcEEEEecCCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi 164 (341)
...+ ... ..+.+||++++..
T Consensus 81 ~~~l-~~~---g~~~~VIDlSsdf 100 (147)
T d1mb4a1 81 YPAL-RQA---GWKGYWIDAASTL 100 (147)
T ss_dssp HHHH-HHT---TCCSEEEESSSTT
T ss_pred hHHH-HHc---CCceEEEeCCccc
Confidence 8776 332 2335799986643
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.83 E-value=2.1e-05 Score=64.35 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=54.7
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhcCCCCCCeE-EEEcCChhhh-hhcCcCCCc-cc-cChHHHh-----hcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQA-VATSLIRTGLCIPAQI-IASAPSERFK-LHWPEPMDF-AL-NDNHRII-----KEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~a-ia~~L~~~G~~~~~~V-~v~~r~~e~~-~~l~~~~g~-~~-~s~~e~~-----~~aDvIilaV~ 133 (341)
++||||||+|.+|+. +.+.|.... ..++ .+.+|+++.. ..+++++|+ .. .+.++++ .+.|+||+|+|
T Consensus 4 kirvaIIGaG~ig~~~~~~~l~~~~---~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATp 80 (157)
T d1nvmb1 4 KLKVAIIGSGNIGTDLMIKVLRNAK---YLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (157)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCS---SEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred CcEEEEEcCcHHHHHHHHHHHhhCC---cceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCC
Confidence 468999999999985 555554433 2355 4678886532 233344676 33 2333332 36899999999
Q ss_pred hH-HHHH--HHHHhhhcccccCCCcEEEEecC
Q psy316 134 PQ-YLDS--AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 134 ~~-~v~~--vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+. +... .++. + +.|..||+..+
T Consensus 81 ag~h~~~~~~~~a-----a--~~G~~VID~s~ 105 (157)
T d1nvmb1 81 ASAHVQNEALLRQ-----A--KPGIRLIDLTP 105 (157)
T ss_dssp HHHHHHHHHHHHH-----H--CTTCEEEECST
T ss_pred chhHHHhHHHHHH-----H--HcCCEEEEccc
Confidence 75 3332 2222 3 67888998754
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.80 E-value=8e-06 Score=67.50 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=53.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKP 134 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~ 134 (341)
-.++|.|||+|..|.+++..|.+.|. .+|++++|++++++.+++.++. ...+.. ..++|+||-|+|.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~---~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGF---EKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTC---CCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence 34689999999999999999999985 5899999999999988775555 322211 2468999988873
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=4.9e-05 Score=61.37 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=60.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC--cCCCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP--EPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~--~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+||||||+ |..|+-+.+.|+++..++-.+++.+.++...-.... ..... ......+...++|++|+|+|...-.++
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~ 81 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEI 81 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHh
Confidence 48999998 999999999888764344456776655432221111 11111 111223457899999999999888787
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
...+ ... ..+.+||+.++-
T Consensus 82 ~~~~-~~~---g~~~~VID~Ss~ 100 (146)
T d1t4ba1 82 YPKL-RES---GWQGYWIDAASS 100 (146)
T ss_dssp HHHH-HHT---TCCCEEEECSST
T ss_pred hHHH-Hhc---CCCeecccCCcc
Confidence 7766 432 233578888654
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.79 E-value=1.1e-05 Score=65.20 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=46.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChh--hhhhc----Cc---C--CCc-c---ccChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSER--FKLHW----PE---P--MDF-A---LNDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e--~~~~l----~~---~--~g~-~---~~s~~e~~~~aDvI 128 (341)
|||+|||+ |++|++++..|...+++ .++.++|+++. +++.+ .. . ... . ..+..+.+++||+|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~--~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvV 78 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFM--KDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVV 78 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTC--CEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcc--cccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEE
Confidence 68999995 99999999999988863 58999998752 23311 11 0 111 1 22345678899999
Q ss_pred EEee
Q psy316 129 FLAM 132 (341)
Q Consensus 129 ilaV 132 (341)
+++.
T Consensus 79 VitA 82 (145)
T d1hyea1 79 IITS 82 (145)
T ss_dssp EECC
T ss_pred EEec
Confidence 9984
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=4.3e-05 Score=61.61 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=61.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHh-cCCCCCCeEEEEcCChhhhh----hcCc---CCCc---cccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIG-AGNMAQAVATSLIR-TGLCIPAQIIASAPSERFKL----HWPE---PMDF---ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~-~G~~~~~~V~v~~r~~e~~~----~l~~---~~g~---~~~s~~e~~~~aDvIilaV 132 (341)
|||+||| +|++|++++..|.. .++ ..++.++|..+ .++ .+.. .... ...+..+.+++||+||++-
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~--~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvita 77 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPS--GSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISA 77 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCT--TCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCC--CcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECC
Confidence 7999999 59999999988754 354 35899999864 332 1211 1111 2234466789999999986
Q ss_pred --C--hH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 --K--PQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 --~--~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
| |. .++++.+++ .++ .++.+|+-+++.++
T Consensus 78 G~~~k~g~~R~dl~~~N~~i~~~v~~~i-~~~---~p~aivivvtNPvD 122 (145)
T d2cmda1 78 GVRRKPGMDRSDLFNVNAGIVKNLVQQV-AKT---CPKACIGIITNPVN 122 (145)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHH-HHH---CTTSEEEECSSSHH
T ss_pred CccCCCCcchhhHHHHHHHHHHHHHHHH-Hhh---CCCcEEEEccCCch
Confidence 1 21 244555566 554 46778887878766
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.76 E-value=4e-05 Score=66.66 Aligned_cols=78 Identities=13% Similarity=0.208 Sum_probs=54.4
Q ss_pred CCeEEEEcccHHHH----HHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCc----cccChHHHhh--cCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQ----AVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDF----ALNDNHRIIK--EAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~----aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~----~~~s~~e~~~--~aDvIilaV 132 (341)
++||||||+|.+|. .....+.+.. +..+|. ++++++++++.+.+++++ ...+.++++. +-|+|++|+
T Consensus 16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~--~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~t 93 (237)
T d2nvwa1 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLS--SQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV 93 (237)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTT--TTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred CeEEEEEecCccccHHHHHHHHHHHhcC--CCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccC
Confidence 36899999998544 4444555432 123655 899999998887776765 3568888876 578999999
Q ss_pred ChHHHHHHHHH
Q psy316 133 KPQYLDSAIQG 143 (341)
Q Consensus 133 ~~~~v~~vl~~ 143 (341)
|+....+....
T Consensus 94 p~~~h~~~~~~ 104 (237)
T d2nvwa1 94 KVPEHYEVVKN 104 (237)
T ss_dssp CHHHHHHHHHH
T ss_pred CCcchhhHHHH
Confidence 98765554433
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=3.3e-05 Score=63.37 Aligned_cols=97 Identities=10% Similarity=0.128 Sum_probs=68.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHH--HHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYL--DSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v--~~v 140 (341)
..++++|||+|.+|..+|+.+...|. +|++++++|-++-+..- .|..+.+.++++..+|++|.++-..++ .+-
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~----~V~v~e~dp~~al~A~~-dG~~v~~~~~a~~~adivvtaTGn~~vI~~eh 97 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGA----RVIITEIDPINALQAAM-EGYEVTTMDEACQEGNIFVTTTGCIDIILGRH 97 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTCEECCHHHHTTTCSEEEECSSCSCSBCHHH
T ss_pred cCCEEEEeccccccHHHHHHHHhCCC----eeEeeecccchhHHhhc-CceEeeehhhhhhhccEEEecCCCccchhHHH
Confidence 35789999999999999999999985 99999999865433322 265555788999999999999975432 122
Q ss_pred HHHhhhcccccCCCcEEEEecCC----CCHHHHHHh
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG----VDLETLKKK 172 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag----i~~~~l~~~ 172 (341)
+ +.+ +++.++.++ +. +..+.|++.
T Consensus 98 ~-----~~M--KdgaIL~N~-Ghfd~EId~~~L~~~ 125 (163)
T d1li4a1 98 F-----EQM--KDDAIVCNI-GHFDVEIDVKWLNEN 125 (163)
T ss_dssp H-----TTC--CTTEEEEEC-SSSTTSBCHHHHHHH
T ss_pred H-----Hhc--cCCeEEEEe-ccccceecHHHHhhc
Confidence 2 234 666666654 33 345666654
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.73 E-value=0.0001 Score=60.41 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=48.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcC--CCCCCeEEEEcCChhhhhhcCc--------CCCc-cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTG--LCIPAQIIASAPSERFKLHWPE--------PMDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G--~~~~~~V~v~~r~~e~~~~l~~--------~~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
|||+|||+|..|.+.+...+..+ ..+..++.++|+++++++...+ ...+ ...+..+.+++||+||++.-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 68999999999887775533221 1223589999999988764221 1123 55677888999999999874
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.64 E-value=8.2e-05 Score=57.59 Aligned_cols=94 Identities=12% Similarity=0.261 Sum_probs=69.6
Q ss_pred CeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHHH
Q psy316 65 TKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 65 ~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
++|+|||+ |..|..+.+.|++.|+ +|+-.+++.+. + .|. ...+..++-...|++++++|+..+.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~----~V~pVnP~~~~---i---~G~~~y~sl~~lp~~~D~vvi~vp~~~~~~ 71 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGF----EVLPVNPNYDE---I---EGLKCYRSVRELPKDVDVIVFVVPPKVGLQ 71 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEECTTCSE---E---TTEECBSSGGGSCTTCCEEEECSCHHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCC----EEEEEcccccc---c---cCccccccchhccccceEEEEEeCHHHHHH
Confidence 57999996 7899999999999995 88887764322 2 466 66777777778899999999999999
Q ss_pred HHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
++++. ... .-..+ .+..|...+++.+.+.
T Consensus 72 ~l~~~-~~~---g~k~v--~~~~g~~~~~~~~~a~ 100 (116)
T d1y81a1 72 VAKEA-VEA---GFKKL--WFQPGAESEEIRRFLE 100 (116)
T ss_dssp HHHHH-HHT---TCCEE--EECTTSCCHHHHHHHH
T ss_pred HHHHH-Hhc---CCceE--EeccchhhHHHHHHHH
Confidence 99887 431 22223 3456666666666654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=2.2e-05 Score=64.86 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=62.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC----c-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD----F-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g----~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++|.|+|+|-.+.+++..|.+.|. +|++++|++++++.+.+.+. + ...........+|+||-|+|.....
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~----~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~ 93 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDC----AVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG 93 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT
T ss_pred CCEEEEECCcHHHHHHHHHhcccce----EEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCccc
Confidence 4789999999999999999999884 79999999999887765432 2 2222122245799999999865322
Q ss_pred HHHHHhhhcccccCCCcEEEEec
Q psy316 139 SAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
+....- ...+ +++.+++++.
T Consensus 94 ~~~~~~-~~~~--~~~~~v~D~v 113 (170)
T d1nyta1 94 DIPAIP-SSLI--HPGIYCYDMF 113 (170)
T ss_dssp CCCCCC-GGGC--CTTCEEEESC
T ss_pred CCCCCc-HHHh--ccCcEEEEee
Confidence 211101 1234 5677777764
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00011 Score=54.36 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=46.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh--hhhhcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER--FKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e--~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
.+||.|||+|..|.+.++.|.+.|. +|++||.++. ..+.+.. ... . .....+.+.+.|+||++-
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~----~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vi~SP 72 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGV----TPRVMDTRMTPPGLDKLPE-AVERHTGSLNDEWLMAADLIVASP 72 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTC----CCEEEESSSSCTTGGGSCT-TSCEEESBCCHHHHHHCSEEEECT
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCC----EEEEeeCCcCchhHHHHhh-ccceeecccchhhhccCCEEEECC
Confidence 4689999999999999999999994 9999997543 3344433 222 2 222355678899999874
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.49 E-value=1.8e-05 Score=72.70 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC----cCCCc---cccChHHHhhcCCEEEEeeChHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP----EPMDF---ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~----~~~g~---~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
.+++|||+|..+..-+..+... ++..+|.+|+|++++.+++. +..|+ .+.+.++++..||+|+.|+....-
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v--~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s~ 206 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKH--LGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAY 206 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHH--SCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSSE
T ss_pred ceEEEEcccHHHHHHHHHHhhh--cceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCCC
Confidence 6899999999999999888764 34579999999998877554 33465 578899999999999999854322
Q ss_pred HHHHHHhhhcccccCCCcEEEEe
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
..++. ...+ +++..|..+
T Consensus 207 ~Pv~~---~~~l--~pG~hI~ai 224 (340)
T d1x7da_ 207 ATIIT---PDML--EPGMHLNAV 224 (340)
T ss_dssp EEEEC---GGGC--CTTCEEEEC
T ss_pred Ccccc---hhhc--CCCCEEeec
Confidence 22332 2235 677665554
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.48 E-value=0.00016 Score=57.71 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++|+|||+ |+.|..+++.|.++|+ +|+..++... .+ .|. ...+..++-...|++++++|+..+.
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~----~v~pVnP~~~---~i---~G~~~~~sl~dlp~~iD~v~i~vp~~~~~ 88 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGY----DVYPVNPKYE---EV---LGRKCYPSVLDIPDKIEVVDLFVKPKLTM 88 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC----EEEEECTTCS---EE---TTEECBSSGGGCSSCCSEEEECSCHHHHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCC----EEEEECCccc---cc---CCCcccccccccCccceEEEEEeCHHHHH
Confidence 468999997 6899999999999995 8888876422 11 466 6778877777899999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
++++++ .. + ... . +.+..|...+.+++.+.
T Consensus 89 ~~~~e~-~~-~--g~k-~-v~~~~G~~~ee~~~~a~ 118 (139)
T d2d59a1 89 EYVEQA-IK-K--GAK-V-VWFQYNTYNREASKKAD 118 (139)
T ss_dssp HHHHHH-HH-H--TCS-E-EEECTTCCCHHHHHHHH
T ss_pred HHHHHH-HH-h--CCC-E-EEEeccccCHHHHHHHH
Confidence 999987 43 2 222 3 33445555555555554
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.45 E-value=0.00016 Score=56.89 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=56.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
|||+|.|+ |+||+.+++.+.+.++ ++. .++++. .+.+.++|+||=-+.|+.+.+.++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~----~l~~~id~~~-----------------~~~~~~~DVvIDFS~p~~~~~~l~ 59 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH----ELVLKVDVNG-----------------VEELDSPDVVIDFSSPEALPKTVD 59 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEETTE-----------------EEECSCCSEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC----eEEEEECCCc-----------------HHHhccCCEEEEecCHHHHHHHHH
Confidence 68999996 9999999998887774 554 333321 122356899999999998888887
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
.. . +.+.-+|.-++|.+.++++.
T Consensus 60 ~~-~-----~~~~p~ViGTTG~~~~~~~~ 82 (128)
T d1vm6a3 60 LC-K-----KYRAGLVLGTTALKEEHLQM 82 (128)
T ss_dssp HH-H-----HHTCEEEECCCSCCHHHHHH
T ss_pred HH-H-----hcCCCEEEEcCCCCHHHHHH
Confidence 65 3 23445666778998776554
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.43 E-value=1.5e-05 Score=66.14 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC----c-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD----F-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g----~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++|.|+|+|.+|.+++..|.+.+ .+|++++|++++++.+.+.++ + ..........++|+||-|+|.....
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~----~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~ 93 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQ----QNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG 93 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTT----CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC----
T ss_pred CCEEEEECCcHHHHHHHHHHcccC----ceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecccccccc
Confidence 468999999999999999998754 489999999999888766432 2 2221222356899999999865432
Q ss_pred HHHHHhhhcccccCCCcEEEEec
Q psy316 139 SAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
...... ...+ +++.+++++.
T Consensus 94 ~~~~~~-~~~~--~~~~~~~D~v 113 (171)
T d1p77a1 94 GTASVD-AEIL--KLGSAFYDMQ 113 (171)
T ss_dssp ---CCC-HHHH--HHCSCEEESC
T ss_pred cccchh-hhhh--cccceeeeee
Confidence 222111 1223 4456677654
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.43 E-value=0.00014 Score=58.31 Aligned_cols=94 Identities=14% Similarity=0.209 Sum_probs=59.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCC--hhhhh----hcCc--CC--Cc-cccChHHHhhcCCEEEEee-
Q psy316 66 KVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPS--ERFKL----HWPE--PM--DF-ALNDNHRIIKEAEYVFLAM- 132 (341)
Q Consensus 66 kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~--~e~~~----~l~~--~~--g~-~~~s~~e~~~~aDvIilaV- 132 (341)
||+||| +|++|+.+|..|...+++ .++.++|++ ++.++ .+.. .+ .. ......+.+++||+|+++.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~--~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG 79 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIA--DEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG 79 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCC--SEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCC--CEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEecc
Confidence 899999 699999999999999863 589999964 33322 1211 01 12 2223345678999999885
Q ss_pred ---ChH-H-----------HHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 133 ---KPQ-Y-----------LDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 133 ---~~~-~-----------v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+|. . ++++.+++ ..+ .++.+++-+++.++
T Consensus 80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i-~~~---~p~~i~ivvtNPvD 123 (142)
T d1o6za1 80 IPRQPGQTRIDLAGDNAPIMEDIQSSL-DEH---NDDYISLTTSNPVD 123 (142)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHH-HTT---CSCCEEEECCSSHH
T ss_pred cccccCCchhhHHHHHHHHHHHHHHHH-Hhc---CCCceEEEecChHH
Confidence 222 1 23333444 433 46678887777665
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00019 Score=58.71 Aligned_cols=100 Identities=10% Similarity=0.047 Sum_probs=66.7
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeE-EEEcCChhh-hh----hcC--cCCCc-cccChHHHhhcCCEEEEee
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQI-IASAPSERF-KL----HWP--EPMDF-ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~-~~----~l~--~~~g~-~~~s~~e~~~~aDvIilaV 132 (341)
-.+||+|+|+ |+||+.+++.+.+..- .++ .+++|.... .. .+. ...++ ...+..+....+|+||=.+
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~---~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs 79 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEG---VQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT 79 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTT---EECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC---CEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence 3579999996 9999999999887642 233 356653221 11 111 11244 5566677788999999999
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
.|....+.++.. . ..+.-+|.-+.|.+.++++.
T Consensus 80 ~p~~~~~~~~~a-~-----~~~~~~ViGTTG~~~~~~~~ 112 (162)
T d1diha1 80 RPEGTLNHLAFC-R-----QHGKGMVIGTTGFDEAGKQA 112 (162)
T ss_dssp CHHHHHHHHHHH-H-----HTTCEEEECCCCCCHHHHHH
T ss_pred cHHHHHHHHHHH-H-----hccceeEEecCCCcHHHHHH
Confidence 999888887654 2 23455666678888776654
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00013 Score=61.42 Aligned_cols=64 Identities=9% Similarity=0.168 Sum_probs=50.1
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c---c---cChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A---L---NDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~---~s~~e~~~~aDvIilaV~ 133 (341)
+||.|+| .|.+|+++++.|+++|+ +|++..|+++++...... ++ . . .+..++++++|+||.++.
T Consensus 4 kkIlV~GatG~iG~~v~~~Ll~~g~----~V~~~~R~~~~~~~~~~~-~~~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 4 KKIAIFGATGQTGLTTLAQAVQAGY----EVTVLVRDSSRLPSEGPR-PAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCGGGSCSSSCC-CSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC----EEEEEEcChhhccccccc-ccccccccccchhhHHHHhcCCCEEEEEec
Confidence 5799998 59999999999999994 999999999887765442 33 1 1 223456789999998873
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.41 E-value=3e-05 Score=63.92 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC--c-c-c---cChHHHhhcCCEEEEeeC---
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD--F-A-L---NDNHRIIKEAEYVFLAMK--- 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g--~-~-~---~s~~e~~~~aDvIilaV~--- 133 (341)
+-|+.|||+|..|..=++.....|. +|+++|+++++++++...++ + . . ....+.++++|+||-++.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA----~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG 107 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGA----QVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPG 107 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred CcEEEEECCChHHHHHHHHHhhCCC----EEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCC
Confidence 3589999999999998888888884 99999999999988776432 1 1 1 124567889999999873
Q ss_pred ---hHH-HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 134 ---PQY-LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 134 ---~~~-v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
|.. -++.++. + +++.+||+++.
T Consensus 108 ~~aP~lIt~~mv~~-----M--k~GSVIVDvai 133 (168)
T d1pjca1 108 RRAPILVPASLVEQ-----M--RTGSVIVDVAV 133 (168)
T ss_dssp SSCCCCBCHHHHTT-----S--CTTCEEEETTC
T ss_pred cccCeeecHHHHhh-----c--CCCcEEEEeec
Confidence 221 2334433 4 78999999864
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.41 E-value=6.9e-05 Score=68.22 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CCc-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MDF-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
.+++|||+|..+...++.|... .+-.+|.+|+|++++++.+.++ .+. ...+..+.+..||+|+.|++... .+
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~--~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~--P~ 201 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRV--FDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK--PV 201 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH--SCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS--CC
T ss_pred cEEEEecCcccHHHHHHHHHHH--hhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc--cc
Confidence 6799999999999999998764 2457999999999998776543 245 55567888999999999998532 22
Q ss_pred HHHhhhcccccCCCcEEEEe
Q psy316 141 IQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~ 160 (341)
+. ...+ +++..|..+
T Consensus 202 ~~---~~~l--~~G~hv~~i 216 (320)
T d1omoa_ 202 VK---AEWV--EEGTHINAI 216 (320)
T ss_dssp BC---GGGC--CTTCEEEEC
T ss_pred cc---hhhc--CCCCeEeec
Confidence 21 2245 778776665
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.39 E-value=0.00021 Score=58.31 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=56.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQY 136 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~ 136 (341)
.+++.|+|+|..|..+|+.+...|. +|++++++|-++-+..- -|..+.+.+++++.+|++|.++....
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg~Ga----~V~V~E~DPi~alqA~m-dGf~v~~~~~a~~~aDi~vTaTGn~~ 90 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKGLGA----RVYITEIDPICAIQAVM-EGFNVVTLDEIVDKGDFFITCTGNVD 90 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTC----EEEEECSCHHHHHHHHT-TTCEECCHHHHTTTCSEEEECCSSSS
T ss_pred CCEEEEecccccchhHHHHHHhCCC----EEEEEecCchhhHHHHh-cCCccCchhHccccCcEEEEcCCCCc
Confidence 4789999999999999999999985 99999999966443333 26655678999999999999997543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.36 E-value=0.00022 Score=57.20 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=59.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCC-c-cccChHHHhhcCCEEEEeeChHHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMD-F-ALNDNHRIIKEAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g-~-~~~s~~e~~~~aDvIilaV~~~~v~~v 140 (341)
+|||||||+ |-.|.-+.+-|.+.+| +..++.....+...-+.+..... . ......+...++|++|+|+|...-.+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~h-P~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~ 80 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDF-PLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAH 80 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTC-CCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-CceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhh
Confidence 478999988 9999999998876554 44566654332222222221111 1 111122346789999999999887777
Q ss_pred HHHhhhcccccCCCcEEEEecCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ag 163 (341)
...+ . ..+..||+.++-
T Consensus 81 ~~~~----~--~~g~~VID~Ss~ 97 (144)
T d2hjsa1 81 AERA----R--AAGCSVIDLSGA 97 (144)
T ss_dssp HHHH----H--HTTCEEEETTCT
T ss_pred cccc----c--cCCceEEeechh
Confidence 7665 3 467788987654
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.29 E-value=0.00011 Score=60.34 Aligned_cols=102 Identities=8% Similarity=0.046 Sum_probs=59.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhh--cCCEEEEeeChHHHHHH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK--EAEYVFLAMKPQYLDSA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~--~aDvIilaV~~~~v~~v 140 (341)
.++||||||+|.||...++.|.+... ...+.+++....+ ......+....+.++++. +.|+|++|+|++...++
T Consensus 6 ~k~kv~iIG~G~~g~~h~~~l~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~ 81 (172)
T d1lc0a1 6 GKFGVVVVGVGRAGSVRLRDLKDPRS--AAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDY 81 (172)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTSHHH--HTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhCCC--CcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccccccccc
Confidence 35799999999999999888765321 1134444432211 222212333346777775 57899999999876666
Q ss_pred HHHhhhcccccCCCcEEEEecCCCCHHHHHHhc
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVDLETLKKKL 173 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l 173 (341)
+... .. ...++++-=--..+.++.++..
T Consensus 82 ~~~a-l~----~gk~V~~EKP~a~~~~e~~~l~ 109 (172)
T d1lc0a1 82 IRQF-LQ----AGKHVLVEYPMTLSFAAAQELW 109 (172)
T ss_dssp HHHH-HH----TTCEEEEESCSCSCHHHHHHHH
T ss_pred cccc-cc----cchhhhcCCCccccHHHHHHHH
Confidence 6554 21 1223555322234566555543
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.25 E-value=0.0001 Score=59.72 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=58.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCC---eEEEE--cCChhhhhhcCcC---C------Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPA---QIIAS--APSERFKLHWPEP---M------DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~---~V~v~--~r~~e~~~~l~~~---~------g~-~~~s~~e~~~~aDv 127 (341)
+|||+|||+ |++|+.++..|...+++... .+.++ +++.++++.+..+ . +. ...+..+.++++|+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv 83 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence 368999997 99999999999887754321 12333 3444444432111 1 12 34556788999999
Q ss_pred EEEee----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 128 VFLAM----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 128 IilaV----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
||++- +|. .++++...+ ..+. +++.+|+-+++.++
T Consensus 84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i-~k~a--~~~~~vivvsNPvD 134 (154)
T d1y7ta1 84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRAL-AEVA--KKDVKVLVVGNPAN 134 (154)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHS--CTTCEEEECSSSHH
T ss_pred EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHH-HHhC--CCCcEEEEecCcHH
Confidence 99986 121 133344445 4444 45666665666544
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.22 E-value=0.00047 Score=54.13 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=58.9
Q ss_pred CCCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHH
Q psy316 63 MWTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYL 137 (341)
Q Consensus 63 m~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v 137 (341)
..++|+|||+ |++|..+.++|.+.| .++|+..+++.+.. .|. ...+..++-...|++++++|+..+
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~---~g~v~pVnP~~~~i------~G~~~y~sl~dlp~~vDlvvi~vp~~~~ 77 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK---KGKVYPVNIKEEEV------QGVKAYKSVKDIPDEIDLAIIVVPKRFV 77 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCC---SSEEEEECSSCSEE------TTEECBSSTTSCSSCCSEEEECSCHHHH
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcC---CCcEEEeccCcccc------CCeEeecchhhcCCCCceEEEecChHHh
Confidence 4678999997 899999999987654 36899888753221 466 667777776789999999999999
Q ss_pred HHHHHHh
Q psy316 138 DSAIQGL 144 (341)
Q Consensus 138 ~~vl~~i 144 (341)
.+++++.
T Consensus 78 ~~~~~~~ 84 (129)
T d2csua1 78 KDTLIQC 84 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.20 E-value=0.00015 Score=54.13 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=50.8
Q ss_pred CCCCCCeEEEEcccHHH-HHHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc--cccChHHHhhcCCEEEEee
Q psy316 60 HVPMWTKVGFIGAGNMA-QAVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF--ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 60 ~~~m~~kIgiIG~G~mG-~aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~--~~~s~~e~~~~aDvIilaV 132 (341)
.+...+||-|||.|-.| +++|+.|.+.|+ +|+.+|+.. ...+.+.+ .|+ ......+.+.+.|+||..-
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~----~VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGY----QISGSDIADGVVTQRLAQ-AGAKIYIGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHTC----EEEEEESCCSHHHHHHHH-TTCEEEESCCGGGGTTCSEEEECT
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCCC----EEEEEeCCCChhhhHHHH-CCCeEEECCccccCCCCCEEEECC
Confidence 34456899999999999 788999999995 999999853 34556666 477 3334445578899988764
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.17 E-value=0.00027 Score=58.41 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~ 101 (341)
|++||||.|.|+||..+++.+.... .-+| .+.+.++
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~~---dieiVaINd~~~ 37 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQD---DMELIGITKTKP 37 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCT---TEEEEEEEESSC
T ss_pred CcEEEEEECCCHHHHHHHHHHHhCC---CceEEEEecCCC
Confidence 7899999999999999999998754 2344 4555554
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.13 E-value=0.00039 Score=58.87 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=67.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhh-cCCEEEEeeChHHHH-HHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK-EAEYVFLAMKPQYLD-SAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~-~aDvIilaV~~~~v~-~vl 141 (341)
.++|+|-|+|++|..+++.|.+.|. +|++++.+++++..... +|....++++++. +|||++.|--...+. +.+
T Consensus 27 gk~v~IqG~G~VG~~~A~~L~~~Ga----kvvv~d~d~~~~~~~~~-~g~~~~~~~~~~~~~~DI~iPcA~~~~I~~~~a 101 (201)
T d1c1da1 27 GLTVLVQGLGAVGGSLASLAAEAGA----QLLVADTDTERVAHAVA-LGHTAVALEDVLSTPCDVFAPCAMGGVITTEVA 101 (201)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTCEECCGGGGGGCCCSEEEECSCSCCBCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEecchHHHHHHHHh-hcccccCccccccccceeeecccccccccHHHH
Confidence 4789999999999999999999995 99999999988887665 5662334556655 799988776544332 233
Q ss_pred HHhhhcccccCCCcEEEEecCC-CCHHHHHHhcc
Q psy316 142 QGLVNDKVTLNSSRCIISMLVG-VDLETLKKKLS 174 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~ag-i~~~~l~~~l~ 174 (341)
+.+ + -++|+.-+++ ++.+...+.|.
T Consensus 102 ~~i-------~-ak~i~e~AN~p~~~~~~~~~L~ 127 (201)
T d1c1da1 102 RTL-------D-CSVVAGAANNVIADEAASDILH 127 (201)
T ss_dssp HHC-------C-CSEECCSCTTCBCSHHHHHHHH
T ss_pred hhh-------h-hheeeccCCCCcchhhHHHHhc
Confidence 333 2 3577766554 34454554554
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.12 E-value=0.00025 Score=57.33 Aligned_cols=69 Identities=16% Similarity=0.098 Sum_probs=47.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCCh--hhhhhcCcC-----C----Cc-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSE--RFKLHWPEP-----M----DF-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~--e~~~~l~~~-----~----g~-~~~s~~e~~~~aDv 127 (341)
++||+|||+ |++|++++..|...+.+. ..++.++|.++ ++++.+.-+ + .. ...+..+.++++|+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 82 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence 358999995 999999999988765432 23577787654 333333211 1 12 34566788999999
Q ss_pred EEEee
Q psy316 128 VFLAM 132 (341)
Q Consensus 128 IilaV 132 (341)
||++-
T Consensus 83 VVita 87 (154)
T d5mdha1 83 AILVG 87 (154)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99985
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.11 E-value=0.00033 Score=55.52 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=71.3
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGA----GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~----G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~~~~v~ 138 (341)
.++|+|||+ ++.|..+.+.|.+.|+ +++.++.++.. +.+ .|. ...+..++-...|++++++|+..+.
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~----~~~~v~~~~~~-~~i---~g~~~~~~l~~i~~~iD~v~v~~p~~~v~ 84 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY----RVLPVNPRFQG-EEL---FGEEAVASLLDLKEPVDILDVFRPPSALM 84 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC----EEEEECGGGTT-SEE---TTEECBSSGGGCCSCCSEEEECSCHHHHT
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCC----CceEEEecccc-cee---eceecccchhhccCCCceEEEeccHHHHH
Confidence 467999998 8999999999999995 89998876432 222 356 6667777667889999999999999
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCCCHHHHHHhcc
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGVDLETLKKKLS 174 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~~l~ 174 (341)
+++++. ... ....+++ ..|...+++.++..
T Consensus 85 ~~v~~~-~~~---g~k~i~~--q~G~~~~e~~~~a~ 114 (136)
T d1iuka_ 85 DHLPEV-LAL---RPGLVWL--QSGIRHPEFEKALK 114 (136)
T ss_dssp TTHHHH-HHH---CCSCEEE--CTTCCCHHHHHHHH
T ss_pred HHHHHH-Hhh---CCCeEEE--ecCccCHHHHHHHH
Confidence 999886 432 3333443 56666666665554
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.08 E-value=0.00063 Score=51.80 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCc-cc--cChHHHhhcCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDF-AL--NDNHRIIKEAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~-~~--~s~~e~~~~aDvIilaV~~~~v~~ 139 (341)
.++|.|||.|.+|..-++.|++.|. +|++++.... ....+.++.++ .. .-..+.+..+++|+.|+....+..
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga----~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~ 87 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGA----RLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQ 87 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTB----EEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----eEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHHHHH
Confidence 4799999999999999999999994 8998876432 22333332233 11 112345778999999998776654
Q ss_pred HH
Q psy316 140 AI 141 (341)
Q Consensus 140 vl 141 (341)
-+
T Consensus 88 ~i 89 (113)
T d1pjqa1 88 RV 89 (113)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.07 E-value=0.00031 Score=51.62 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=48.0
Q ss_pred CeEEEEcccHHHH-HHHHHHHhcCCCCCCeEEEEcCCh-hhhhhcCcCCCc-c-ccChHHHhhcCCEEEEee
Q psy316 65 TKVGFIGAGNMAQ-AVATSLIRTGLCIPAQIIASAPSE-RFKLHWPEPMDF-A-LNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~-aia~~L~~~G~~~~~~V~v~~r~~-e~~~~l~~~~g~-~-~~s~~e~~~~aDvIilaV 132 (341)
|||-|||.|-+|. ++|+.|.+.|+ .|+.+|+.+ +..++|++ .|+ . .....+-+.++|+||..-
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~----~VsGSD~~~~~~t~~L~~-~Gi~i~~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGN----DVYGSNIEETERTAYLRK-LGIPIFVPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEECSSCCHHHHHHHH-TTCCEESSCCTTSCCCCSEEEECT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCC----eEEEEeCCCChhHHHHHH-CCCeEEeeecccccCCCCEEEEec
Confidence 7899999999995 88999999995 999999865 34556766 587 3 233334467899998764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.93 E-value=0.00015 Score=60.04 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=47.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc----------cccChHHHhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF----------ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~----------~~~s~~e~~~~aDvIilaV~ 133 (341)
.++|.|||+|..+.+++..|.+.| +|++++|++++++.+.+++.. ...+.......+|+||-|+|
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~-----~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp 92 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN-----NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP 92 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-----EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred CCEEEEECCcHHHHHHHHHHcccc-----ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence 368999999999999999996554 899999999999887653311 11222333456777777776
Q ss_pred h
Q psy316 134 P 134 (341)
Q Consensus 134 ~ 134 (341)
.
T Consensus 93 ~ 93 (177)
T d1nvta1 93 I 93 (177)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0025 Score=51.68 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=54.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-c-----ccChHHHh--------hcCCEEEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-A-----LNDNHRII--------KEAEYVFL 130 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~-----~~s~~e~~--------~~aDvIil 130 (341)
.+|.|+|+|.+|...+..+...|. .+|+++++++++++..++ +|. . ..+..+.. ..+|+||-
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~---~~Vi~~d~~~~rl~~a~~-~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGA---AQVVVTDLSATRLSKAKE-IGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESCHHHHHHHHH-TTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEECCCccHHHHHHHHHHcCC---ceEEeccCCHHHHHHHHH-hCCcccccccccccccccccccccCCCCceEEEe
Confidence 479999999999999888888773 589999999999887665 775 1 12222222 25799999
Q ss_pred eeCh-HHHHHHHHHh
Q psy316 131 AMKP-QYLDSAIQGL 144 (341)
Q Consensus 131 aV~~-~~v~~vl~~i 144 (341)
|+.. ..++..++-+
T Consensus 104 ~~G~~~~~~~a~~~~ 118 (171)
T d1pl8a2 104 CTGAEASIQAGIYAT 118 (171)
T ss_dssp CSCCHHHHHHHHHHS
T ss_pred ccCCchhHHHHHHHh
Confidence 9974 4455555444
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.89 E-value=0.0011 Score=55.08 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=61.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-ccc---------------------------
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALN--------------------------- 116 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~--------------------------- 116 (341)
-|+.|||+|..|..=++--...|. +|+++|.++++++++.+.++- ...
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA----~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGA----VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCC----EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 489999999999988887778884 999999999888887763221 100
Q ss_pred -ChHHHhhcCCEEEEeeC------hHH-HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 117 -DNHRIIKEAEYVFLAMK------PQY-LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 117 -s~~e~~~~aDvIilaV~------~~~-v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
...+.+.++|+||-++. |.. -++.++. + +++.+||+++.
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~-----M--k~GSVIVDvai 152 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTK-----M--KPGSVIIDLAV 152 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTT-----S--CTTCEEEETTG
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHh-----c--CCCcEEEEEee
Confidence 01234678999998872 221 2334443 4 78999998753
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0004 Score=57.58 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=35.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
.++|.|||+|-+|.+++..|.+.|. .+|++++|++++.+++
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~---~~i~i~nR~~~~~~~~ 58 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGL---KEIKLFNRRDEFFDKA 58 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEECSSTTHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHhhcCC---ceEeeeccchHHHHHH
Confidence 4689999999999999999999984 6899999998766543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.66 E-value=0.0038 Score=50.29 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=52.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---cc-c----ChHHH---h-----hcCCEE
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---AL-N----DNHRI---I-----KEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~-~----s~~e~---~-----~~aDvI 128 (341)
.++.|+|+|.+|...++.+...|. +|+++++++++++.+++ +|. .. . +..+. + ..+|+|
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga----~vi~v~~~~~r~~~a~~-~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGA----FVVCTARSPRRLEVAKN-CGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHH-TTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CEEEEEcccccchhhHhhHhhhcc----cccccchHHHHHHHHHH-cCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 479999999999999988888884 89999999999887666 554 11 1 11111 1 237899
Q ss_pred EEeeCh-HHHHHHHHHh
Q psy316 129 FLAMKP-QYLDSAIQGL 144 (341)
Q Consensus 129 ilaV~~-~~v~~vl~~i 144 (341)
|-|+.. ..+...++-+
T Consensus 103 id~~g~~~~~~~a~~~~ 119 (170)
T d1e3ja2 103 IDCSGNEKCITIGINIT 119 (170)
T ss_dssp EECSCCHHHHHHHHHHS
T ss_pred eecCCChHHHHHHHHHH
Confidence 888864 4455555544
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.63 E-value=0.0023 Score=52.90 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=45.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhh-hcCcC----------------CCc-cccChHHHhhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERFKL-HWPEP----------------MDF-ALNDNHRIIKEA 125 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~-~l~~~----------------~g~-~~~s~~e~~~~a 125 (341)
.||||.|+|+||+.+++.+.+.. ..+|. +.++++.... .+... .++ ...+..+...++
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~---dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~v 78 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQP---DMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTS 78 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCT---TEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred eEEEEECCCHHHHHHHHHHHhCC---CCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcC
Confidence 48999999999999999998865 23554 4555543221 11111 122 233445666789
Q ss_pred CEEEEeeChHHH
Q psy316 126 EYVFLAMKPQYL 137 (341)
Q Consensus 126 DvIilaV~~~~v 137 (341)
|+||-|++...-
T Consensus 79 DiViecTG~f~~ 90 (178)
T d1b7go1 79 DIVVDTTPNGVG 90 (178)
T ss_dssp SEEEECCSTTHH
T ss_pred CEEEECCCCcCC
Confidence 999999986533
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.62 E-value=0.0023 Score=52.70 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=62.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCCh-----hhhhh----cCcCCC--c-cccChHHHhhcCCEEE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSE-----RFKLH----WPEPMD--F-ALNDNHRIIKEAEYVF 129 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~-----e~~~~----l~~~~g--~-~~~s~~e~~~~aDvIi 129 (341)
|+||+|||+ |-.|.-+.+-|.++-. .+|. ++.++. ++... +..... . ...+......+.|++|
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~---~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf 77 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPH---MTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVF 77 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTT---EEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCC---CceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceee
Confidence 479999996 9999999998887632 2443 333221 11111 111111 1 2223334456899999
Q ss_pred EeeChHHHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 130 LAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 130 laV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
+|+|+..-.+....+ . ..+..||++++..- ....+++.+
T Consensus 78 ~alp~~~s~~~~~~~----~--~~~~~vIDlSadfRl~~~~~~~~~y~ 119 (179)
T d2g17a1 78 LATAHEVSHDLAPQF----L--QAGCVVFDLSGAFRVNDRAFYEKYYG 119 (179)
T ss_dssp ECSCHHHHHHHHHHH----H--HTTCEEEECSSTTSSSCHHHHHHHHC
T ss_pred ccccchhHHHHhhhh----h--hcCceeeccccccccccccccccccc
Confidence 999998877776655 3 45778898876543 344555554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.60 E-value=0.00095 Score=54.82 Aligned_cols=76 Identities=16% Similarity=0.097 Sum_probs=53.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc----cChHHHhh------cCCEEEEee
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL----NDNHRIIK------EAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~----~s~~e~~~------~aDvIilaV 132 (341)
.+|.|+|+|.+|...++.+...|. .+|++.++++++++..++ +|. .. .+..+.+. ..|+||-|+
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga---~~Vi~~d~~~~r~~~a~~-lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGA---GRIIGVGSRPICVEAAKF-YGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTC---SCEEEECCCHHHHHHHHH-HTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CEEEEEcCCcchhhhhhhhhcccc---cccccccchhhhHHHHHh-hCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 579999999999988887777773 579999999988877665 675 21 12222221 278999988
Q ss_pred C-hHHHHHHHHHh
Q psy316 133 K-PQYLDSAIQGL 144 (341)
Q Consensus 133 ~-~~~v~~vl~~i 144 (341)
. +..+.+.++-+
T Consensus 105 g~~~~~~~a~~~~ 117 (174)
T d1jqba2 105 GGSETLSQAVKMV 117 (174)
T ss_dssp SCTTHHHHHHHHE
T ss_pred CCHHHHHHHHHHH
Confidence 6 45566666544
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.55 E-value=0.0034 Score=49.21 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCeEEEEcc----------cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC-------cC---CCc-cccChHHHh
Q psy316 64 WTKVGFIGA----------GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP-------EP---MDF-ALNDNHRII 122 (341)
Q Consensus 64 ~~kIgiIG~----------G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~-------~~---~g~-~~~s~~e~~ 122 (341)
.+||+|+|+ +.-.-.++..|.+.|. +|.+||+.-...+... .. .+. ...++.+++
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~----~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i 88 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGY----ELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVV 88 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTC----EEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHH
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhc----cccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhh
Confidence 468999997 5667889999999985 9999997432221111 10 122 456888999
Q ss_pred hcCCEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCC
Q psy316 123 KEAEYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 123 ~~aDvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
..+|+||++++.+...++...+ .++++|+++-+-
T Consensus 89 ~~~D~ivi~t~h~~f~~l~~~~-------~~~~~I~D~~~~ 122 (136)
T d1mv8a3 89 ASSDVLVLGNGDELFVDLVNKT-------PSGKKLVDLVGF 122 (136)
T ss_dssp HHCSEEEECSCCGGGHHHHHSC-------CTTCEEEESSSC
T ss_pred hhceEEEEEeCCHHHHHHHHHh-------cCCCEEEECCCC
Confidence 9999999999988776654433 467889987543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.53 E-value=0.0054 Score=48.18 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=55.1
Q ss_pred eEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChhhhhhcCcCCCccccChHHH-hhcCCEEEEeeChHHHHHHHH
Q psy316 66 KVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSERFKLHWPEPMDFALNDNHRI-IKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 66 kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~~~~l~~~~g~~~~s~~e~-~~~aDvIilaV~~~~v~~vl~ 142 (341)
||+|+|+ |+||+.+++.+.+..- .++. .+++.. +.... ..++|+||=.+.|..+.+.++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~---~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS~p~~~~~~~~ 62 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADD---LTLSAELDAGD---------------PLSLLTDGNTEVVIDFTHPDVVMGNLE 62 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTT---SEEEEEECTTC---------------CTHHHHTTTCSEEEECCCTTTHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC---CEEEEEEecCC---------------chhhhccccCCEEEEcccHHHHHHHHH
Confidence 7999995 9999999998877542 3443 444321 11112 246899999999988888877
Q ss_pred HhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 143 GLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
.. . ..+.-+|.-++|.+.+++++
T Consensus 63 ~~-~-----~~~~~~ViGTTG~~~~~~~~ 85 (135)
T d1yl7a1 63 FL-I-----DNGIHAVVGTTGFTAERFQQ 85 (135)
T ss_dssp HH-H-----HTTCEEEECCCCCCHHHHHH
T ss_pred HH-H-----hcCCCEEEeccccchhHHHH
Confidence 65 3 23455666778998765543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.50 E-value=0.0047 Score=50.79 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=62.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChh--hhhh----cCcCCCccccChHHHhhcCCEEEEeeChH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSER--FKLH----WPEPMDFALNDNHRIIKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e--~~~~----l~~~~g~~~~s~~e~~~~aDvIilaV~~~ 135 (341)
++||||+|+ |-.|.-+.+-|.++-. .+|. ++.++.. +... +.+..-+...+.++..+++|++|+|+|..
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~---~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~ 77 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPE---AKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG 77 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTT---EEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCC---ceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccH
Confidence 369999988 9999999998877542 3444 4444221 1111 11111113345566677899999999987
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecCCCC---HHHHHHhcc
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLVGVD---LETLKKKLS 174 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~agi~---~~~l~~~l~ 174 (341)
.-.+.... . .+..||++++..- .+..+++.+
T Consensus 78 ~s~~~~~~-----~---~~~~VIDlSadfRl~~~~~y~~~Y~ 111 (176)
T d1vkna1 78 ASYDLVRE-----L---KGVKIIDLGADFRFDDPGVYREWYG 111 (176)
T ss_dssp HHHHHHTT-----C---CSCEEEESSSTTTCSSHHHHHHHHC
T ss_pred HHHHHHHh-----h---ccceEEecCccccccchhhHHHhhc
Confidence 65554432 2 4678899877654 345666666
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.47 E-value=0.0014 Score=56.39 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=70.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhh-cCCEEEEeeChHHHH-HH
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK-EAEYVFLAMKPQYLD-SA 140 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~-~aDvIilaV~~~~v~-~v 140 (341)
..++|.|-|.|++|+.+++.|.+.|. +|++.+.++.+.+.+..+.|....++.+... +|||++.|--...+. +.
T Consensus 38 ~g~~v~IqG~GnVG~~~a~~L~~~Ga----kvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~~~I~~~~ 113 (230)
T d1leha1 38 EGLAVSVQGLGNVAKALCKKLNTEGA----KLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFT 113 (230)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSCCBSTTH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccccccccChHH
Confidence 45799999999999999999999995 8999999998888776655663334555554 899999997654432 23
Q ss_pred HHHhhhcccccCCCcEEEEec-CCCCHHHHHHhcc
Q psy316 141 IQGLVNDKVTLNSSRCIISML-VGVDLETLKKKLS 174 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~-agi~~~~l~~~l~ 174 (341)
+..+ + -++|+..+ ++.+.....+.|.
T Consensus 114 ~~~l-------~-ak~Ive~ANn~~t~~ea~~~L~ 140 (230)
T d1leha1 114 IPQL-------K-AKVIAGSADNQLKDPRHGKYLH 140 (230)
T ss_dssp HHHC-------C-CSEECCSCSCCBSSHHHHHHHH
T ss_pred hhcc-------C-ccEEEecccCCCCCchHHHHHH
Confidence 3333 2 35788777 5565434444444
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.38 E-value=0.0032 Score=51.57 Aligned_cols=45 Identities=20% Similarity=0.063 Sum_probs=37.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
.+|.|+|+|.+|...++.+...|. .+|+++++++++++.+++ +|.
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga---~~Vi~~~~~~~~~~~a~~-lGa 74 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGA---ENVIVIAGSPNRLKLAEE-IGA 74 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTB---SEEEEEESCHHHHHHHHH-TTC
T ss_pred CEEEEECCCccchhheeccccccc---cccccccccccccccccc-ccc
Confidence 579999999999988888877773 489999999999887765 675
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.0057 Score=53.08 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=57.8
Q ss_pred CeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 65 TKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
-|+.+| |.+.+|.++|+.|++.|. +|++++|++++++.+.+++ .+.-....++.+.+ .+..+++
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~----~Vv~~~r~~~~l~~~~~~l-------~~~~~~~~~~~~~~Dls~~~~v~~ 78 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGL----KVVGCARTVGNIEELAAEC-------KSAGYPGTLIPYRCDLSNEEDILS 78 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HHTTCSSEEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HhcCCCceEEEEEccCCCHHHHHH
Confidence 467666 558999999999999995 9999999998888766531 11111234555544 4678888
Q ss_pred HHHHhhhcccccCCCcEEEEecCC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
+++++ ...+ .+=.++|+.++.
T Consensus 79 ~v~~~-~~~~--g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 79 MFSAI-RSQH--SGVDICINNAGL 99 (257)
T ss_dssp HHHHH-HHHH--CCCSEEEECCCC
T ss_pred HHHHH-HHhc--CCCCEEEecccc
Confidence 88777 5444 333477876544
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.36 E-value=0.0031 Score=50.63 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=58.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC-Cc-cccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM-DF-ALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~-g~-~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
.||||||+ |-.|.-+.+-|.++.+ +..++.....+...-+.+.... .. ......+...+.|++|+++++....+..
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f-p~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~ 80 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL-PIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA 80 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS-CEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC-CceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHH
Confidence 48999998 9999999998877752 3345554442222212222111 11 2222344567899999999998766666
Q ss_pred HHhhhcccccCCCcEEEEecCCC
Q psy316 142 QGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~agi 164 (341)
.+. . ..+..||++++-.
T Consensus 81 ~~~----~--~~~~~VIDlSsdf 97 (154)
T d2gz1a1 81 PYA----V--KAGVVVVDNTSYF 97 (154)
T ss_dssp HHH----H--HTTCEEEECSSTT
T ss_pred hhh----c--cccceehhcChhh
Confidence 554 3 4678999986643
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.28 E-value=0.0018 Score=50.29 Aligned_cols=76 Identities=11% Similarity=-0.073 Sum_probs=51.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeE-EEEcCChhhhhhcCcCCCc-c--ccChHHHh-hcCCEEEEeeChHHHH
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQI-IASAPSERFKLHWPEPMDF-A--LNDNHRII-KEAEYVFLAMKPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V-~v~~r~~e~~~~l~~~~g~-~--~~s~~e~~-~~aDvIilaV~~~~v~ 138 (341)
+.++.|+|+|++|.++++.+..+. .+++ .++|-++++..+.-. |+ + .....+.. +..++.++++|....+
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~---~~~iv~fiDdd~~k~G~~I~--Gi~V~~~~~l~~~~~~~i~iai~~i~~~~~~ 77 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGE---SFELRGFFDVDPEKVGRPVR--GGVIEHVDLLPQRVPGRIEIALLTVPREAAQ 77 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCS---SEEEEEEEESCTTTTTCEET--TEEEEEGGGHHHHSTTTCCEEEECSCHHHHH
T ss_pred CceEEEEcCCHHHHHHHHhHhhcC---CcEEEEEEeCchHhcCCEEC--CEEEecHHHHHHHHhhcccEEEEeCCHHHHH
Confidence 358999999999999988764332 2454 467877765443322 54 2 23333433 3578999999998888
Q ss_pred HHHHHh
Q psy316 139 SAIQGL 144 (341)
Q Consensus 139 ~vl~~i 144 (341)
+++..+
T Consensus 78 ~I~d~l 83 (126)
T d2dt5a2 78 KAADLL 83 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.011 Score=46.78 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=46.9
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh----hhhcCcCCCc--cccC--hHHH-----hhcCCEEEEee
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF----KLHWPEPMDF--ALND--NHRI-----IKEAEYVFLAM 132 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~----~~~l~~~~g~--~~~s--~~e~-----~~~aDvIilaV 132 (341)
.|-|+|+|.+|..+++.|.+.|. +|++.+.++++ .+.+.. .|+ ...+ ..+. +.+||.+|+++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~----~v~vId~d~~~~~~~~~~~~~-~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQ----NVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC----CEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECCCHHHHHHHHHHHHcCC----CEEEEeccchhHHHHHHHhhc-CCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 58999999999999999999984 89999888754 333333 244 2222 1222 45899999999
Q ss_pred ChHH
Q psy316 133 KPQY 136 (341)
Q Consensus 133 ~~~~ 136 (341)
+.+.
T Consensus 80 ~~d~ 83 (153)
T d1id1a_ 80 DNDA 83 (153)
T ss_dssp SCHH
T ss_pred ccHH
Confidence 8653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.21 E-value=0.0038 Score=50.82 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=54.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc----cChHHHhh-----cCCEEEEee
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL----NDNHRIIK-----EAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~----~s~~e~~~-----~aDvIilaV 132 (341)
..+|.|+|+|.+|...++.+...|. ..|++.++++++++.+++ +|. .. .+..+.++ ..|+||-|+
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~---~~v~~~~~~~~k~~~a~~-~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGA---SIIIAVDIVESRLELAKQ-LGATHVINSKTQDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTC---SEEEEEESCHHHHHHHHH-HTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCEEEEeCCCHHHhhhhhccccccc---ceeeeeccHHHHHHHHHH-cCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence 3579999999999999988877774 578889999988887765 675 21 22333332 269999999
Q ss_pred Ch-HHHHHHHHHh
Q psy316 133 KP-QYLDSAIQGL 144 (341)
Q Consensus 133 ~~-~~v~~vl~~i 144 (341)
.. ..++..++-+
T Consensus 105 G~~~~~~~~~~~~ 117 (174)
T d1f8fa2 105 GSPEILKQGVDAL 117 (174)
T ss_dssp CCHHHHHHHHHTE
T ss_pred CcHHHHHHHHhcc
Confidence 64 4555555444
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.17 E-value=0.0083 Score=49.17 Aligned_cols=99 Identities=10% Similarity=0.090 Sum_probs=60.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCC---CCeEEEEcCChh--hhhhcCcC---C------Cc-cccChHHHhhcCCEE
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCI---PAQIIASAPSER--FKLHWPEP---M------DF-ALNDNHRIIKEAEYV 128 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~---~~~V~v~~r~~e--~~~~l~~~---~------g~-~~~s~~e~~~~aDvI 128 (341)
.||.|+|+ |++|.+++..|.....+. .-.+.++|..+. .++.+.-+ . .. ...+..+.++++|+|
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvV 104 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWA 104 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceE
Confidence 48999996 999999999988754322 235667786542 33322110 1 12 456778889999999
Q ss_pred EEee----ChH------------HHHHHHHHhhhcccccCCCcEEEEecCCCCH
Q psy316 129 FLAM----KPQ------------YLDSAIQGLVNDKVTLNSSRCIISMLVGVDL 166 (341)
Q Consensus 129 ilaV----~~~------------~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~ 166 (341)
|+.- +|. .++++.+.+ .++- +++.+|+-+.+.+..
T Consensus 105 vi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i-~~~a--~~~~~vlvv~NPvd~ 155 (175)
T d7mdha1 105 LLIGAKPRGPGMERAALLDINGQIFADQGKAL-NAVA--SKNVKVLVVGNPCNT 155 (175)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHH-HHHS--CTTCEEEECSSSHHH
T ss_pred EEeeccCCCCCCcHHHHHHHHHHHHHHHHHHH-HhhC--CCCcEEEEecCcHHH
Confidence 9886 121 133444455 5554 446656656565443
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.93 E-value=0.015 Score=50.04 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=56.6
Q ss_pred CeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 65 TKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
+||++| | .+.+|.++++.|++.|. +|.+++|++++++.+.+++ .+ ...+++.+.+ .++.+++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga----~V~~~~r~~~~l~~~~~~i-------~~--~g~~~~~~~~Dv~~~~~v~~ 67 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF----AVAIADYNDATAKAVASEI-------NQ--AGGHAVAVKVDVSDRDQVFA 67 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTSHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEeeCCCHHHHHH
Confidence 588877 4 47799999999999995 9999999998887765531 11 1234555544 4667888
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|+.++
T Consensus 68 ~~~~~-~~~~--g~iDilVnnAG 87 (255)
T d1gega_ 68 AVEQA-RKTL--GGFDVIVNNAG 87 (255)
T ss_dssp HHHHH-HHHT--TCCCEEEECCC
T ss_pred HHHHH-HHHh--CCccEEEeccc
Confidence 88777 5544 33347787643
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.90 E-value=0.014 Score=47.41 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=55.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc----C--hHHHh-----hcCCEEE
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN----D--NHRII-----KEAEYVF 129 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~----s--~~e~~-----~~aDvIi 129 (341)
...+|.|+|+|.+|...++.+...|. .+|++.++++++++..++ +|. ..+ + ..+.. ...|++|
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~---~~Vi~~d~~~~kl~~a~~-lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vi 102 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGA---SRIIGVGTHKDKFPKAIE-LGATECLNPKDYDKPIYEVICEKTNGGVDYAV 102 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC---SEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCC---ceeeccCChHHHHHHHHH-cCCcEEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence 34579999999999999998888884 589999999999887766 776 221 1 12222 1479999
Q ss_pred EeeCh-HHHHHHHHHh
Q psy316 130 LAMKP-QYLDSAIQGL 144 (341)
Q Consensus 130 laV~~-~~v~~vl~~i 144 (341)
.++-. ..+.+.+..+
T Consensus 103 d~~g~~~~~~~~~~~~ 118 (174)
T d1p0fa2 103 ECAGRIETMMNALQST 118 (174)
T ss_dssp ECSCCHHHHHHHHHTB
T ss_pred EcCCCchHHHHHHHHH
Confidence 98854 4455554443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.89 E-value=0.011 Score=48.21 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=53.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC------hHHHh-----hcCCEEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND------NHRII-----KEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s------~~e~~-----~~aDvIil 130 (341)
..+|.|+|+|.+|...++.+...|. .+|++.|+++++++..++ +|. ..++ ..+.. ...|++|.
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~---~~Vi~vd~~~~kl~~Ak~-~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~ 105 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGA---SRIIGIDLNKDKFEKAMA-VGATECISPKDSTKPISEVLSEMTGNNVGYTFE 105 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEECSCGGGHHHHHH-HTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred CCEEEEECCCchhHHHHHHHHHcCC---ceEEEecCcHHHHHHHHh-cCCcEEECccccchHHHHHHHHhccccceEEEE
Confidence 3579999999999999999988884 589999999999886655 675 2211 11111 24888888
Q ss_pred eeCh-HHHHHHHHHh
Q psy316 131 AMKP-QYLDSAIQGL 144 (341)
Q Consensus 131 aV~~-~~v~~vl~~i 144 (341)
++-. ..+.+.+..+
T Consensus 106 ~~g~~~~~~~a~~~~ 120 (176)
T d1d1ta2 106 VIGHLETMIDALASC 120 (176)
T ss_dssp CSCCHHHHHHHHTTS
T ss_pred eCCchHHHHHHHHHh
Confidence 8854 4455544433
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.86 E-value=0.0078 Score=49.71 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=47.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc---ccc---ChHHHhhcCCEEEEee
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF---ALN---DNHRIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~---~~~---s~~e~~~~aDvIilaV 132 (341)
++|.|.| +|.+|+.+++.|++.|+ ...|+...|++++...+...... ... +..++++.+|.||.+.
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~--~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a 76 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSD--KFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILT 76 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTT--TCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCC--cEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEE
Confidence 5899998 59999999999999984 23466677998888776653222 112 2345577899998765
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.018 Score=49.56 Aligned_cols=86 Identities=8% Similarity=0.147 Sum_probs=57.6
Q ss_pred CCCCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHH
Q psy316 62 PMWTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQY 136 (341)
Q Consensus 62 ~m~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~ 136 (341)
.++-|+.+| |.+.||.++++.|++.|. +|.+++|++++++...++ ..+ -...+++.+.+ .++.
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~~~~~~~~-------l~~-~~g~~~~~~~~Dv~~~~~ 69 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGC----SVVVASRNLEEASEAAQK-------LTE-KYGVETMAFRCDVSNYEE 69 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHH-------HHH-HHCCCEEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHH-------HHH-HhCCcEEEEEccCCCHHH
Confidence 355566666 457899999999999995 999999998887765442 111 11345555554 4677
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++++ ...+ .+=.++|+.++
T Consensus 70 v~~~~~~~-~~~~--g~iDiLVnnAG 92 (251)
T d1vl8a_ 70 VKKLLEAV-KEKF--GKLDTVVNAAG 92 (251)
T ss_dssp HHHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHHH-HHHc--CCCCEEEECCC
Confidence 88888877 5544 33347787643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.80 E-value=0.014 Score=50.42 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=57.0
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 66 KVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 66 kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+.+| |+ +.||.++++.|++.|. +|.+++|++++++.+.++ ..+......++.+.+ .++.++.+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~~~Dvt~~~~v~~~ 73 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGA----KLSLVDVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEAY 73 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHH-------HHhhCCCCeEEEEeccCCCHHHHHHH
Confidence 55655 54 7899999999999995 999999999888766542 112223445665554 46778888
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 74 ~~~~-~~~~--G~iDiLVnnAG 92 (258)
T d1iy8a_ 74 VTAT-TERF--GRIDGFFNNAG 92 (258)
T ss_dssp HHHH-HHHH--SCCSEEEECCC
T ss_pred HHHH-HHHh--CCCCEEEECCc
Confidence 8777 5544 33347887643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.74 E-value=0.02 Score=46.55 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=54.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc----C-h-HHHh-----hcCCEEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN----D-N-HRII-----KEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~----s-~-~e~~-----~~aDvIil 130 (341)
..+|.|+|+|.+|...++.+...|. ..|++.++++++++..++ +|. ..+ + . .... ...|++|-
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga---~~Vi~~d~~~~r~~~a~~-~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie 104 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGA---SRIIAIDINGEKFPKAKA-LGATDCLNPRELDKPVQDVITELTAGGVDYSLD 104 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCEEEEECCChHHHHHHHHHHHhCC---ceeeeeccchHHHHHHHH-hCCCcccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence 3579999999999999988888884 589999999988776655 775 221 1 1 1111 24799999
Q ss_pred eeC-hHHHHHHHHHh
Q psy316 131 AMK-PQYLDSAIQGL 144 (341)
Q Consensus 131 aV~-~~~v~~vl~~i 144 (341)
|+- +..+...++-+
T Consensus 105 ~~G~~~~~~~a~~~~ 119 (174)
T d1e3ia2 105 CAGTAQTLKAAVDCT 119 (174)
T ss_dssp SSCCHHHHHHHHHTB
T ss_pred ecccchHHHHHHHHh
Confidence 995 45555555544
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.013 Score=44.32 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=46.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCc-cccChHHH---hh--cCCEEEE---eeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDF-ALNDNHRI---IK--EAEYVFL---AMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~-~~~s~~e~---~~--~aDvIil---aV~ 133 (341)
..||||||.|-+|..|+..-.+-|+ ++.++|++++. +..+..++-+ ...|.+.+ +. .+|+|-+ -+|
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~----~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~E~EnI~ 86 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGV----EVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIA 86 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTC----EEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCC----EEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEEEEecCcC
Confidence 3589999999999999999999885 99999988663 3334332111 23333322 22 4587733 345
Q ss_pred hHHHHHH
Q psy316 134 PQYLDSA 140 (341)
Q Consensus 134 ~~~v~~v 140 (341)
...++.+
T Consensus 87 ~~~L~~l 93 (111)
T d1kjqa2 87 TDMLIQL 93 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.01 Score=51.22 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=55.8
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 66 KVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 66 kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+.+| |+ +-+|.++++.|++.|. +|.+.+|++++++.+.+++. +......+.++.+ .++.++++
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~~~~~~~~l~-------~~~~~~~~~~~~~Dv~~~~~v~~~ 72 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGA----KVALVDWNLEAGVQCKAALH-------EQFEPQKTLFIQCDVADQQQLRDT 72 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHT-------TTSCGGGEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHH-------HhcCCCcEEEEEeecCCHHHHHHH
Confidence 56666 54 7899999999999995 99999999988776544211 0011223444443 46778888
Q ss_pred HHHhhhcccccCCCcEEEEecCCCC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
++++ ...+ .+=.++|+.++...
T Consensus 73 ~~~~-~~~~--G~iDilVnnAg~~~ 94 (254)
T d2gdza1 73 FRKV-VDHF--GRLDILVNNAGVNN 94 (254)
T ss_dssp HHHH-HHHH--SCCCEEEECCCCCC
T ss_pred HHHH-HHHc--CCcCeecccccccc
Confidence 8777 5544 33347887754433
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.66 E-value=0.0079 Score=46.27 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=47.5
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccCh--HHH-----hhcCCEEEEeeChHH
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALNDN--HRI-----IKEAEYVFLAMKPQY 136 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s~--~e~-----~~~aDvIilaV~~~~ 136 (341)
.|-|+|+|.+|..+++.|. | ++|.+.+.++++.+.+.. .|+ ...|. .+. +.+|+.++++++.+.
T Consensus 2 HivI~G~g~~g~~l~~~L~--~----~~i~vi~~d~~~~~~~~~-~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~ 74 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--G----SEVFVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS 74 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--G----GGEEEEESCTTHHHHHHH-TTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred EEEEECCCHHHHHHHHHHc--C----CCCEEEEcchHHHHHHHh-cCccccccccCCHHHHHHhhhhcCcEEEEeccchh
Confidence 4789999999999999884 3 368888999988888766 465 22221 232 457999999998654
Q ss_pred H
Q psy316 137 L 137 (341)
Q Consensus 137 v 137 (341)
.
T Consensus 75 ~ 75 (129)
T d2fy8a1 75 E 75 (129)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.64 E-value=0.0039 Score=51.59 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=35.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
.+++.|.| .|.+|.++++.|.+.|. +|++++|++++++.+.+
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~G~----~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGEGA----EVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhcc----chhhcccchHHHHHHHH
Confidence 36677777 69999999999999995 99999999998877655
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.56 E-value=0.021 Score=49.23 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=56.3
Q ss_pred eEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 66 KVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 66 kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
||++| |.+-||.++++.|++.|. +|++++|++++++.+.+++ .+ ...++.++.+ .++.++++
T Consensus 3 KValITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~l~~~~~~l-------~~--~g~~~~~~~~Dvs~~~~v~~~ 69 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL----RVFVCARGEEGLRTTLKEL-------RE--AGVEADGRTCDVRSVPEIEAL 69 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEeecCCHHHHHHH
Confidence 68877 557899999999999995 9999999998887765531 11 1234555544 46778888
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|..++
T Consensus 70 ~~~~-~~~~--g~iDilVnnAG 88 (257)
T d2rhca1 70 VAAV-VERY--GPVDVLVNNAG 88 (257)
T ss_dssp HHHH-HHHT--CSCSEEEECCC
T ss_pred HHHH-HHHh--CCCCEEEeccc
Confidence 8877 5544 33347787643
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.55 E-value=0.018 Score=49.28 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=54.4
Q ss_pred CCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 64 WTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+-|+.+| | .+-+|.++++.|++.|. +|++++|++++++.+.++++... -.+|+ ..++.+++++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~----~V~~~~r~~~~l~~~~~~~~~~~-------~~~Dv----~~~~~v~~~~ 68 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA----RLVACDIEEGPLREAAEAVGAHP-------VVMDV----ADPASVERGF 68 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHTTTCEE-------EECCT----TCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHcCCeE-------EEEec----CCHHHHHHHH
Confidence 3355555 5 47799999999999995 99999999998887766544300 01232 2466777777
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++ ...+ .+=.++|+.++
T Consensus 69 ~~~-~~~~--g~iDilVnnAG 86 (242)
T d1ulsa_ 69 AEA-LAHL--GRLDGVVHYAG 86 (242)
T ss_dssp HHH-HHHH--SSCCEEEECCC
T ss_pred HHH-HHhc--CCceEEEECCc
Confidence 776 5444 33347787643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.54 E-value=0.011 Score=47.29 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=37.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
..+|.|+|+|.+|...++.+...| .+|++.++++++++.+++ +|.
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G----~~Vi~~~~~~~~~~~a~~-~Ga 72 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMG----LHVAAIDIDDAKLELARK-LGA 72 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT----CEEEEEESCHHHHHHHHH-TTC
T ss_pred CCEEEEeeccccHHHHHHHHHHcC----CccceecchhhHHHhhhc-cCc
Confidence 357999999999999888777777 489999999999887765 675
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=95.48 E-value=0.018 Score=49.22 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=54.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++-|.|+ +.+|.++|+.|++.|. +|++.+|+.++++.+.++++ .+++++.+ .++.++++
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~----~V~~~~r~~~~~~~~~~~~~------------~~~~~~~~Dls~~~~i~~~ 69 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGA----SLVAVDREERLLAEAVAALE------------AEAIAVVADVSDPKAVEAV 69 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHTCC------------SSEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHcC------------CceEEEEecCCCHHHHHHH
Confidence 34445555 6799999999999995 99999999988877666543 23333332 46778888
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|..++
T Consensus 70 ~~~i-~~~~--g~iDiLinnAg 88 (241)
T d2a4ka1 70 FAEA-LEEF--GRLHGVAHFAG 88 (241)
T ss_dssp HHHH-HHHH--SCCCEEEEGGG
T ss_pred HHHH-HHHh--CCccEeccccc
Confidence 8777 5544 44457777653
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.48 E-value=0.018 Score=47.29 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=48.4
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEE-EEcCChh--hhhhcCc-C--CCc--cccChHHHhhcCCEEEEeeC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQII-ASAPSER--FKLHWPE-P--MDF--ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e--~~~~l~~-~--~g~--~~~s~~e~~~~aDvIilaV~ 133 (341)
.+.||||||+ |-.|.-+.+-|.++- ..++. +..++.. +...... . ... ......+...++|++|+|+|
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP---~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHP---QFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCS---SEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred CccEEEEECcccHHHHHHHHHHHhCC---CceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 3578999988 999999999887653 23554 3333221 1111110 0 111 22223445678999999999
Q ss_pred hHHHHHHHHHh
Q psy316 134 PQYLDSAIQGL 144 (341)
Q Consensus 134 ~~~v~~vl~~i 144 (341)
...-.++...+
T Consensus 81 ~~~s~~~~~~l 91 (183)
T d2cvoa1 81 HGTTQEIIKGL 91 (183)
T ss_dssp SSHHHHHHHTS
T ss_pred cchHHHHHHHH
Confidence 98877776555
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.38 E-value=0.015 Score=50.45 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=57.8
Q ss_pred CCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHH-hhcCCEEEEee---ChHHH
Q psy316 64 WTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRI-IKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 64 ~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~-~~~aDvIilaV---~~~~v 137 (341)
+-|+++| |.+-+|.++++.|++.|. +|++++|++++++.+.+++ .+. ....++.++.+ .++.+
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga----~V~~~~r~~~~l~~~~~~l-------~~~~~~~~~~~~~~~Dvt~~~~v 72 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGA----KVTITGRHAERLEETRQQI-------LAAGVSEQNVNSVVADVTTDAGQ 72 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HHTTCCGGGEEEEECCTTSHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HhcCCCcCceEEEEccCCCHHHH
Confidence 3478877 568999999999999995 9999999998887765531 000 11223555544 46778
Q ss_pred HHHHHHhhhcccccCCCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++++ ...+ .+=.++|+.++
T Consensus 73 ~~~~~~~-~~~~--g~iDilvnnAG 94 (264)
T d1spxa_ 73 DEILSTT-LGKF--GKLDILVNNAG 94 (264)
T ss_dssp HHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHH-HHHh--CCCCEeecccc
Confidence 8888776 5444 33357887654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.32 E-value=0.025 Score=48.55 Aligned_cols=79 Identities=9% Similarity=0.154 Sum_probs=55.2
Q ss_pred CeEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe---eChHHHHH
Q psy316 65 TKVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQYLDS 139 (341)
Q Consensus 65 ~kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila---V~~~~v~~ 139 (341)
=|+.+| |+ +-||.++++.|++.|. +|++.+|++++++.+.++++- ...++. ..++.+++
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~Dv~~~~~v~~ 69 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGA----KVVFGDILDEEGKAMAAELAD------------AARYVHLDVTQPAQWKA 69 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHTGG------------GEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhhC------------cceEEEeecCCHHHHHH
Confidence 356666 55 7899999999999995 999999999988877665321 122222 24677888
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|..++
T Consensus 70 ~~~~~-~~~~--g~idilinnAG 89 (244)
T d1nffa_ 70 AVDTA-VTAF--GGLHVLVNNAG 89 (244)
T ss_dssp HHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHH-HHHh--CCCeEEEECCc
Confidence 88877 5544 34457887654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.30 E-value=0.035 Score=47.66 Aligned_cols=81 Identities=11% Similarity=0.181 Sum_probs=55.9
Q ss_pred CeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 65 TKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
=|+.+| |.+-||.++++.|++.|. +|.+++|++++++.+.++++ ...++.++.+ .++.+++
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga----~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~ 71 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGA----KVMITGRHSDVGEKAAKSVG----------TPDQIQFFQHDSSDEDGWTK 71 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHC----------CTTTEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhC----------CCCcEEEEEccCCCHHHHHH
Confidence 366766 558899999999999995 99999999988876655311 1224445544 4677888
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|+.++
T Consensus 72 ~~~~~-~~~~--G~iDiLVnnAg 91 (251)
T d1zk4a1 72 LFDAT-EKAF--GPVSTLVNNAG 91 (251)
T ss_dssp HHHHH-HHHH--SSCCEEEECCC
T ss_pred HHHHH-HHHh--CCceEEEeccc
Confidence 88777 5544 33347787643
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.022 Score=50.27 Aligned_cols=95 Identities=8% Similarity=0.083 Sum_probs=62.0
Q ss_pred ccCCCCCCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---
Q psy316 57 VEHHVPMWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM--- 132 (341)
Q Consensus 57 ~~~~~~m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV--- 132 (341)
+.|+.+-.+.+.|.|+ +-||.++++.|++.|. +|++.+|++++++.+.+++..... ......++.+.+
T Consensus 5 ~~~g~L~gKvalITGas~GIG~aia~~la~~Ga----~Vvi~~r~~~~l~~~~~el~~~~~----~~~~~~~~~~~~Dvs 76 (297)
T d1yxma1 5 LAPGLLQGQVAIVTGGATGIGKAIVKELLELGS----NVVIASRKLERLKSAADELQANLP----PTKQARVIPIQCNIR 76 (297)
T ss_dssp BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHHHTSC----TTCCCCEEEEECCTT
T ss_pred CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHHhhhc----cccCceEEEEeccCC
Confidence 3455444444555555 7899999999999995 999999999888766543110000 012456776665
Q ss_pred ChHHHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 133 KPQYLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 133 ~~~~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+++++++++++ ...+ .+=.++|+.++
T Consensus 77 ~~~~v~~~~~~~-~~~~--G~iDiLVnnAg 103 (297)
T d1yxma1 77 NEEEVNNLVKST-LDTF--GKINFLVNNGG 103 (297)
T ss_dssp CHHHHHHHHHHH-HHHH--SCCCEEEECCC
T ss_pred CHHHHHHHHHHH-HHHh--CCeEEEEeecc
Confidence 467888888877 5544 44457887644
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.022 Score=53.12 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=52.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-------CC-------------------c----
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-------MD-------------------F---- 113 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-------~g-------------------~---- 113 (341)
..||.|||+|.+|+.++++|...|+ .+|+++|.+.=....|..+ .| +
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gv---g~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGF---RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTC---CCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCC---CeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 4689999999999999999999996 5788888743211222111 11 1
Q ss_pred --cccChHHHhhcCCEEEEeeChHHHHHHHHHh
Q psy316 114 --ALNDNHRIIKEAEYVFLAMKPQYLDSAIQGL 144 (341)
Q Consensus 114 --~~~s~~e~~~~aDvIilaV~~~~v~~vl~~i 144 (341)
....+.+.+++.|+||.|+-....+..+.+.
T Consensus 114 ~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~ 146 (426)
T d1yovb1 114 NKIQDFNDTFYRQFHIIVCGLDSIIARRWINGM 146 (426)
T ss_dssp SCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred ccccchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence 1122356678899999998765555555443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.05 Score=46.49 Aligned_cols=81 Identities=7% Similarity=0.053 Sum_probs=55.9
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 66 KVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 66 kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+.+| |+ +-||.++++.|+++|. +|++++|++++++.+.+++ .+ ...++.++.+ .++.++.+
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~----~V~l~~r~~~~l~~~~~~~-------~~--~~~~~~~~~~Dvs~~~~v~~~ 74 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKS----KLVLWDINKHGLEETAAKC-------KG--LGAKVHTFVVDCSNREDIYSS 74 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEeeCCCHHHHHHH
Confidence 45555 65 6699999999999995 9999999999988776531 11 1245555554 35677778
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+ ...+ .+=.++|..++
T Consensus 75 ~~~i-~~~~--g~idilinnag 93 (244)
T d1yb1a_ 75 AKKV-KAEI--GDVSILVNNAG 93 (244)
T ss_dssp HHHH-HHHT--CCCSEEEECCC
T ss_pred HHHH-HHHc--CCCceeEeecc
Confidence 8776 5544 44457776644
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.18 E-value=0.011 Score=47.03 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=37.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
.+|.|+|+|.+|...++.+...|. +|++.++++++++.+++ +|.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~----~v~~~~~~~~r~~~~k~-~Ga 72 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGL----NVVAVDIGDEKLELAKE-LGA 72 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC----EEEEECSCHHHHHHHHH-TTC
T ss_pred CEEEEeecccchhhhhHHHhcCCC----eEeccCCCHHHhhhhhh-cCc
Confidence 579999999999988887777773 89999999999887766 775
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.034 Score=47.73 Aligned_cols=77 Identities=10% Similarity=0.244 Sum_probs=53.6
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 66 KVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 66 kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+.+| |+ +.||.++++.|++.|. +|++++|++++++.+.++++ +..++.+ .+++++++
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~~~~~~~~~~-------------~~~~~~~Dvs~~~~v~~~ 69 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGA----RVVICDKDESGGRALEQELP-------------GAVFILCDVTQEDDVKTL 69 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHCT-------------TEEEEECCTTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHhcC-------------CCeEEEccCCCHHHHHHH
Confidence 45555 54 8999999999999995 99999999998887766432 1223332 46778888
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 70 ~~~~-~~~~--g~iDilVnnAG 88 (250)
T d1ydea1 70 VSET-IRRF--GRLDCVVNNAG 88 (250)
T ss_dssp HHHH-HHHH--SCCCEEEECCC
T ss_pred HHHH-HHhc--CCCCEEEeccc
Confidence 8777 5444 33347777654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.17 E-value=0.01 Score=47.89 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=50.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc---cCh-HHHhh-----cCCEEEEeeC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL---NDN-HRIIK-----EAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~---~s~-~e~~~-----~aDvIilaV~ 133 (341)
.+|.|+|+|.+|...++.+...|. ..|+++++++++++.+++ +|. .. .++ ++..+ ..|++|-++.
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~---~~vv~~~~~~~k~~~~~~-~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTP---ATVIALDVKEEKLKLAER-LGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCC---CEEEEEESSHHHHHHHHH-TTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred CEEEEeCCChHHHHHHHHHHhhcC---cccccccchhHHHHHHhh-cccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 469999999999998887777773 588899999998887766 664 22 121 11221 3688888886
Q ss_pred hH-HHHHHHHH
Q psy316 134 PQ-YLDSAIQG 143 (341)
Q Consensus 134 ~~-~v~~vl~~ 143 (341)
.. .+...+.-
T Consensus 110 ~~~~~~~a~~~ 120 (172)
T d1h2ba2 110 SQATVDYTPYL 120 (172)
T ss_dssp CHHHHHHGGGG
T ss_pred cchHHHHHHHH
Confidence 44 44444433
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.01 Score=47.74 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc--cChHH---HhhcCCEEEEeeCh-H
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL--NDNHR---IIKEAEYVFLAMKP-Q 135 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~--~s~~e---~~~~aDvIilaV~~-~ 135 (341)
..+|.|+|+|.+|...++.+...|. ++++.++++++.+.+++ +|. .. .+... ..+..|++|-++.. .
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga----~~i~~~~~~~~~~~a~~-lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~ 105 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGA----HVVAFTTSEAKREAAKA-LGADEVVNSRNADEMAAHLKSFDFILNTVAAPH 105 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESSGGGHHHHHH-HTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred CCEEEEeccchHHHHHHHHhhcccc----cchhhccchhHHHHHhc-cCCcEEEECchhhHHHHhcCCCceeeeeeecch
Confidence 4689999999999988888777884 77788888888776555 675 22 22111 23458999999864 4
Q ss_pred HHHHHHHHh
Q psy316 136 YLDSAIQGL 144 (341)
Q Consensus 136 ~v~~vl~~i 144 (341)
.+...+.-+
T Consensus 106 ~~~~~~~~l 114 (168)
T d1uufa2 106 NLDDFTTLL 114 (168)
T ss_dssp CHHHHHTTE
T ss_pred hHHHHHHHH
Confidence 565555444
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.0058 Score=49.33 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=46.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC--hHH----HhhcCCEEEEeeC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND--NHR----IIKEAEYVFLAMK 133 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s--~~e----~~~~aDvIilaV~ 133 (341)
..+|.|+|+|.+|...++.+...|. +|+++++++++++.+++ +|. ...+ ..+ .....|++|.++.
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~----~vi~~~~~~~k~~~a~~-lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGA----ETYVISRSSRKREDAMK-MGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC----EEEEEESSSTTHHHHHH-HTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CCEEEEECCCCcchhHHHHhhhccc----cccccccchhHHHHhhc-cCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 3589999999999998887777784 89999999998887765 675 2211 111 1234677777764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.03 E-value=0.029 Score=48.44 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=53.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
+++-|.| .+.||.++++.|++.|. +|.+++|++++++.+.+++ .+ ....+.++.+ .++.++++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~----~V~i~~r~~~~l~~~~~~~-------~~--~~~~~~~~~~D~s~~~~~~~~ 73 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAGLGA----RVYTCSRNEKELDECLEIW-------RE--KGLNVEGSVCDLLSRTERDKL 73 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCCceEEEeecCCHHHHHHH
Confidence 4455556 58899999999999994 9999999998877655421 11 1123333333 46778888
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+. .+..++|+.++
T Consensus 74 ~~~~-~~~~~-g~idilinnag 93 (258)
T d1ae1a_ 74 MQTV-AHVFD-GKLNILVNNAG 93 (258)
T ss_dssp HHHH-HHHTT-SCCCEEEECCC
T ss_pred HHHH-HHHhC-CCcEEEecccc
Confidence 8777 55440 13457776543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.03 E-value=0.041 Score=47.15 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=56.3
Q ss_pred CCCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
+.-|+++| | .+.||.++++.|.+.|. +|.+++|++++++.+.+++ .+ ...++.++.+ .++++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~Ga----~V~~~~r~~~~l~~~~~~l-------~~--~g~~~~~~~~Dvt~~~~v 74 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSVS----HVICISRTQKSCDSVVDEI-------KS--FGYESSGYAGDVSKKEEI 74 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSS----EEEEEESSHHHHHHHHHHH-------HT--TTCCEEEEECCTTCHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHH
Confidence 44578877 4 47899999999999994 9999999998887665431 00 1224444444 46778
Q ss_pred HHHHHHhhhcccccCCCcEEEEec
Q psy316 138 DSAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
.++++++ ...+ .+=.++|..+
T Consensus 75 ~~~~~~~-~~~~--g~iDilvnna 95 (251)
T d2c07a1 75 SEVINKI-LTEH--KNVDILVNNA 95 (251)
T ss_dssp HHHHHHH-HHHC--SCCCEEEECC
T ss_pred HHHHHHH-HHhc--CCceeeeecc
Confidence 8888877 5444 3334777654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.99 E-value=0.084 Score=45.84 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=53.8
Q ss_pred CCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 64 WTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 64 ~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
+=|+++| |+|.+|.++++.|++.|. +|++.+|+.++++.+.+++ .+ ....++.++.+ .++.++
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~Ga----~Vii~~r~~~~l~~~~~~l-------~~-~~g~~~~~~~~D~~~~~~v~ 91 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLGA----QCVIASRKMDVLKATAEQI-------SS-QTGNKVHAIQCDVRDPDMVQ 91 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH-HHSSCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEECCHHHHHHHHHHH-------HH-hcCCceEEEEecccChHHHH
Confidence 3366666 579999999999999995 9999999988877654421 11 11234444443 355666
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.++..+ .... ..=.++|+.++
T Consensus 92 ~~~~~~-~~~~--g~iDilvnnAg 112 (294)
T d1w6ua_ 92 NTVSEL-IKVA--GHPNIVINNAA 112 (294)
T ss_dssp HHHHHH-HHHT--CSCSEEEECCC
T ss_pred HHhhhh-hhhc--cccchhhhhhh
Confidence 666665 4433 23347777644
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.04 Score=47.38 Aligned_cols=83 Identities=11% Similarity=0.092 Sum_probs=57.0
Q ss_pred CCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 64 WTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 64 ~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
+=|+++| |.+-+|.++++.|++.|. +|++++|++++++.+.+++ .+ ...+++++.+ .++.++
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga----~V~~~~r~~~~~~~~~~~l-------~~--~g~~~~~~~~Dvs~~~~~~ 76 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA----SVVVSDINADAANHVVDEI-------QQ--LGGQAFACRCDITSEQELS 76 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HH--cCCcEEEEEccCCCHHHHH
Confidence 3467777 558899999999999995 9999999998887765531 11 1234555554 467788
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++ ...+ .+=.++|..++
T Consensus 77 ~~~~~~-~~~~--g~iDilvnnAG 97 (255)
T d1fmca_ 77 ALADFA-ISKL--GKVDILVNNAG 97 (255)
T ss_dssp HHHHHH-HHHH--SSCCEEEECCC
T ss_pred HHHHHH-HHHc--CCCCEeeeCCc
Confidence 888776 5544 33347777643
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.96 E-value=0.069 Score=45.86 Aligned_cols=84 Identities=5% Similarity=0.032 Sum_probs=55.5
Q ss_pred CCCeEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
++=|+++| |+ +-||.++++.|++.|. +|++++|++++++.+.+++ .+ ....+.++.+ .++.+
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga----~V~~~~r~~~~l~~~~~~~-------~~--~g~~~~~~~~Dv~~~~~v 72 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA----SVYTCSRNQKELNDCLTQW-------RS--KGFKVEASVCDLSSRSER 72 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCEEEEEECCTTCHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCCceEEEeeCCCHHHH
Confidence 44466666 54 7899999999999995 9999999998887665431 11 1223333333 46778
Q ss_pred HHHHHHhhhcccccC-CCcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLN-SSRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~-~~~iIVs~~a 162 (341)
+++++++ ...+ . +=.++|..++
T Consensus 73 ~~~~~~~-~~~~--~~~idilvnnAG 95 (259)
T d2ae2a_ 73 QELMNTV-ANHF--HGKLNILVNNAG 95 (259)
T ss_dssp HHHHHHH-HHHT--TTCCCEEEECCC
T ss_pred HHHHHHH-HHHh--CCCceEEEECCc
Confidence 8888776 5444 3 2357787644
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.94 E-value=0.056 Score=46.61 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=54.7
Q ss_pred CCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe---eChHHHH
Q psy316 64 WTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQYLD 138 (341)
Q Consensus 64 ~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila---V~~~~v~ 138 (341)
+=|+.+| |.+-+|.++++.|++.|. +|++++|++++++++.++++ . ...+.++. ..+++++
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~~~~~~~~l~----~------~~~~~~~~~Dv~~~~~v~ 70 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA----KVVIADIADDHGQKVCNNIG----S------PDVISFVHCDVTKDEDVR 70 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHC----C------TTTEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhc----C------CCceEEEEccCCCHHHHH
Confidence 3456666 457899999999999995 99999999988887655321 0 11122222 3567888
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.+++++ ...+ .+=.++|..++
T Consensus 71 ~~~~~~-~~~~--g~iD~lVnnAG 91 (268)
T d2bgka1 71 NLVDTT-IAKH--GKLDIMFGNVG 91 (268)
T ss_dssp HHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHH-HHHc--CCcceeccccc
Confidence 888777 5444 33347776644
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.94 E-value=0.011 Score=47.91 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=31.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
.+||+|||+|..|...|..|.+.|+ .+|++++|++
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~---~~V~v~E~~~ 38 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGY---SDITIFEKQE 38 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTC---CCEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCC---CeEEEEEecC
Confidence 5799999999999999999999995 3699999864
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.93 E-value=0.025 Score=49.18 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=55.8
Q ss_pred CeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 65 TKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
-|+.+| |.+.||.++++.|++.|. +|++.+|++++++.+.+++. .. -.....+..+.+ .+..++.
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga----~V~l~~r~~~~l~~~~~~l~-~~-----~~~~~~~~~~~~Dvs~~~~v~~ 74 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGA----NVTITGRSSERLEETRQIIL-KS-----GVSEKQVNSVVADVTTEDGQDQ 74 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHH-TT-----TCCGGGEEEEECCTTSHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHH-hc-----CCCCCceEEEEccCCCHHHHHH
Confidence 356666 558899999999999995 99999999988877654310 00 011123444444 4677888
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|..++
T Consensus 75 ~~~~~-~~~~--g~iDilvnnAG 94 (272)
T d1xkqa_ 75 IINST-LKQF--GKIDVLVNNAG 94 (272)
T ss_dssp HHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHH-HHHh--CCceEEEeCCc
Confidence 88777 5444 33347777644
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.89 E-value=0.04 Score=47.38 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=54.3
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe---eChHHHHHH
Q psy316 66 KVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQYLDSA 140 (341)
Q Consensus 66 kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila---V~~~~v~~v 140 (341)
|+.+| | .+-||.++++.|++.|. +|.+++|++++++.+.+++| .+++.+. ..+..++++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga----~V~~~~r~~~~l~~~~~~~~------------~~~~~~~~Dvt~~~~v~~~ 69 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGA----RVAIADINLEAARATAAEIG------------PAACAIALDVTDQASIDRC 69 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTE----EEEEEESCHHHHHHHHHHHC------------TTEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhC------------CceEEEEeeCCCHHHHHHH
Confidence 56655 4 48999999999999994 99999999988887665433 1223333 256778888
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 70 ~~~~-~~~~--g~iDilVnnAg 88 (256)
T d1k2wa_ 70 VAEL-LDRW--GSIDILVNNAA 88 (256)
T ss_dssp HHHH-HHHH--SCCCEEEECCC
T ss_pred HHHH-HHHh--CCccEEEeecc
Confidence 8776 5444 33347777644
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.89 E-value=0.031 Score=48.10 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=54.6
Q ss_pred CeEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 65 TKVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 65 ~kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
=|+.+| |+ +.+|.++++.|++.|. +|++.+|++++++++.++ ..+. ...+++.+.+ .++.++.
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~~~~~~~~-------~~~~-~g~~~~~~~~Dv~~~~~v~~ 76 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGA----NVAVIYRSAADAVEVTEK-------VGKE-FGVKTKAYQCDVSNTDIVTK 76 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTE----EEEEEESSCTTHHHHHHH-------HHHH-HTCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHH-------HHHH-hCCceEEEEccCCCHHHHHH
Confidence 355555 54 7799999999999994 999999998776654432 1110 1245555554 5677888
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|..++
T Consensus 77 ~~~~~-~~~~--g~iDilVnnAg 96 (260)
T d1h5qa_ 77 TIQQI-DADL--GPISGLIANAG 96 (260)
T ss_dssp HHHHH-HHHS--CSEEEEEECCC
T ss_pred HHHHH-HHHh--CCCcEeccccc
Confidence 88877 5544 33346776643
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.84 E-value=0.044 Score=47.06 Aligned_cols=80 Identities=13% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe---eChHHHH
Q psy316 64 WTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQYLD 138 (341)
Q Consensus 64 ~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila---V~~~~v~ 138 (341)
+=|+.+| | .+-||.++++.|++.|. +|++++|++++++.+.++++ ...+++. ..+..++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga----~V~~~~~~~~~~~~~~~~~~------------~~~~~~~~Dv~~~~~~~ 68 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGA----KVAFSDINEAAGQQLAAELG------------ERSMFVRHDVSSEADWT 68 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEECSCHHHHHHHHHHHC------------TTEEEECCCTTCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhC------------CCeEEEEeecCCHHHHH
Confidence 3466666 4 57899999999999995 99999999988887665432 1223332 2466788
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++ ...+ .+=.++|..++
T Consensus 69 ~~~~~~-~~~~--g~iDilVnnAG 89 (253)
T d1hxha_ 69 LVMAAV-QRRL--GTLNVLVNNAG 89 (253)
T ss_dssp HHHHHH-HHHH--CSCCEEEECCC
T ss_pred HHHHHH-HHHh--CCCCeEEeccc
Confidence 888777 5544 34457787644
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.83 E-value=0.065 Score=46.04 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=54.4
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 66 KVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 66 kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+.+| |+ +.||.++++.|++.|. +|++++|++++++.+.+++ .+ ...++..+.+ .++.++++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga----~V~~~~r~~~~l~~~~~~~-------~~--~g~~~~~~~~Dv~~~~~v~~~ 72 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGT----AIALLDMNREALEKAEASV-------RE--KGVEARSYVCDVTSEEAVIGT 72 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HT--TTSCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHHHH
Confidence 45555 55 7799999999999995 9999999998887665421 10 1234554444 46778888
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ ..=.++|..++
T Consensus 73 ~~~~-~~~~--g~iDilVnnaG 91 (260)
T d1zema1 73 VDSV-VRDF--GKIDFLFNNAG 91 (260)
T ss_dssp HHHH-HHHH--SCCCEEEECCC
T ss_pred HHHH-HHHh--CCCCeehhhhc
Confidence 8776 5444 33347776644
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.80 E-value=0.011 Score=51.04 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=33.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|+.+|.|||+|.-|..+|..|.++|+ +|.+++++++
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~G~----~v~vlE~~~~ 36 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKAGI----DNVILERQTP 36 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTC----CEEEECSSCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC----CEEEEeCCCC
Confidence 67789999999999999999999995 9999999764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.049 Score=46.33 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=31.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..||.|||+|.+|+.++..|...|. .+++++|.+.
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gv---g~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGV---GNLTLLDFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC---SEEEEECCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC---CeEEEECCcc
Confidence 4689999999999999999999996 6899999754
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.77 E-value=0.029 Score=45.60 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=42.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcCChhh-hhhc-CcCC----------------Cc-cccChHHHhhc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAPSERF-KLHW-PEPM----------------DF-ALNDNHRIIKE 124 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r~~e~-~~~l-~~~~----------------g~-~~~s~~e~~~~ 124 (341)
+||||-|.|++|+.+.+.+...+- -+|. +.++++.. ...+ ...+ ++ ...+..++..+
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~d---i~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 78 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDD---MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE 78 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSS---EEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCC---ceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcC
Confidence 589999999999999999887652 3444 44554321 1111 1111 11 11233455678
Q ss_pred CCEEEEeeChHH
Q psy316 125 AEYVFLAMKPQY 136 (341)
Q Consensus 125 aDvIilaV~~~~ 136 (341)
+|+||-|++...
T Consensus 79 vDvViEcTG~f~ 90 (171)
T d1cf2o1 79 ADIVIDCTPEGI 90 (171)
T ss_dssp CSEEEECCSTTH
T ss_pred CCEEEEccCCCC
Confidence 888888887654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.74 E-value=0.045 Score=47.07 Aligned_cols=78 Identities=6% Similarity=0.056 Sum_probs=53.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe---eChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila---V~~~~v~~v 140 (341)
+++-|.|+ +-||.++++.|++.|. +|++++|++++++.+.++++. .+.++. ..++.++++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga----~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~Dv~~~~~v~~~ 69 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAAGA----RVVLADVLDEEGAATARELGD------------AARYQHLDVTIEEDWQRV 69 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHTTGG------------GEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHhCC------------ceEEEEcccCCHHHHHHH
Confidence 33444455 6899999999999995 999999999988877665431 122222 246778888
Q ss_pred HHHhhhcccccCCCcEEEEec
Q psy316 141 IQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~ 161 (341)
++++ ...+ .+=.++|+.+
T Consensus 70 ~~~~-~~~~--g~iDilVnnA 87 (254)
T d1hdca_ 70 VAYA-REEF--GSVDGLVNNA 87 (254)
T ss_dssp HHHH-HHHH--SCCCEEEECC
T ss_pred HHHH-HHHc--CCccEEEecC
Confidence 8776 5444 3334778764
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=94.71 E-value=0.062 Score=46.09 Aligned_cols=85 Identities=9% Similarity=0.078 Sum_probs=55.5
Q ss_pred CCCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCC-hhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHH
Q psy316 63 MWTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQY 136 (341)
Q Consensus 63 m~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~-~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~ 136 (341)
|+-|+.+| |.+.||.++|+.|++.|. +|++.+|+ ++.++.+.++ ..+ .....++++.+ .+++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga----~V~~~~r~~~~~~~~~~~~-------~~~-~~g~~~~~~~~Dv~~~~~ 69 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA----DIVLNGFGDAAEIEKVRAG-------LAA-QHGVKVLYDGADLSKGEA 69 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC----EEEEECCSCHHHHHHHHHH-------HHH-HHTSCEEEECCCTTSHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEeCCcHHHHHHHHHH-------HHH-hcCCcEEEEECCCCCHHH
Confidence 34467777 557899999999999995 99999987 4555554432 001 12345665554 4677
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++++ ...+ .+=.++|+.++
T Consensus 70 v~~~~~~~-~~~~--G~iDiLVnnAG 92 (260)
T d1x1ta1 70 VRGLVDNA-VRQM--GRIDILVNNAG 92 (260)
T ss_dssp HHHHHHHH-HHHH--SCCSEEEECCC
T ss_pred HHHHHHHH-HHHh--CCCcEEEeecc
Confidence 88888877 5544 33347787643
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.70 E-value=0.017 Score=48.36 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
++||.|||+|-.|.+.|..|.++|+ +|++++|+
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~----~V~vier~ 38 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGY----SVHILARD 38 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESS
T ss_pred CCcEEEECccHHHHHHHHHHHHCCC----CEEEEeCC
Confidence 4689999999999999999999995 99999985
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.62 E-value=0.033 Score=48.41 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=54.2
Q ss_pred eEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHH-hhcCCEEEEee---ChHHHHH
Q psy316 66 KVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRI-IKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 66 kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~-~~~aDvIilaV---~~~~v~~ 139 (341)
|+.+| |.+-||.++++.|++.|. +|++.+|++++++.+.+++ .+. .....+..+.+ .++.+++
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga----~V~~~~r~~~~l~~~~~~i-------~~~~~~~~~~~~~~~Dv~~~~~v~~ 73 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGA----QVTITGRNEDRLEETKQQI-------LKAGVPAEKINAVVADVTEASGQDD 73 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HHTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------HHcCCCCcceEEEEeeCCCHHHHHH
Confidence 55666 457899999999999995 9999999998887765531 010 01113334443 4677888
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ .+=.++|..++
T Consensus 74 ~~~~~-~~~~--G~iDilVnnAG 93 (274)
T d1xhla_ 74 IINTT-LAKF--GKIDILVNNAG 93 (274)
T ss_dssp HHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHH-HHHc--CCceEEEeecc
Confidence 88777 5444 33347776643
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.047 Score=46.53 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=54.1
Q ss_pred CCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEe---eChHHHH
Q psy316 64 WTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLA---MKPQYLD 138 (341)
Q Consensus 64 ~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIila---V~~~~v~ 138 (341)
+=|+.+| | .+.||.++++.|++.|. +|.+++|++++++.+.++++. +...+. ..++.++
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~----~Vv~~~r~~~~l~~~~~~~~~------------~~~~~~~Dv~~~~~v~ 66 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA----KVIGTATSENGAQAISDYLGA------------NGKGLMLNVTDPASIE 66 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHHHGG------------GEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHHHhCC------------CCcEEEEEecCHHHhh
Confidence 3467777 4 58899999999999995 999999999988877654321 122222 2467788
Q ss_pred HHHHHhhhcccccCCCcEEEEec
Q psy316 139 SAIQGLVNDKVTLNSSRCIISML 161 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~ 161 (341)
++++++ ...+ .+=.++|..+
T Consensus 67 ~~~~~~-~~~~--g~iDilVnnA 86 (243)
T d1q7ba_ 67 SVLEKI-RAEF--GEVDILVNNA 86 (243)
T ss_dssp HHHHHH-HHHT--CSCSEEEECC
T ss_pred hhhhhh-hccc--CCcceehhhh
Confidence 888777 5444 3334777664
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.043 Score=48.41 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=45.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c---ccC---hH-HHhhcCCEEEEee
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A---LND---NH-RIIKEAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~---~~s---~~-e~~~~aDvIilaV 132 (341)
|||.|+|+ |-+|+.+++.|++.|+ .+|++.++.......+.+..++ . ..+ .. ...+++|+||-+.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~---~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a 75 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH---YEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT---CEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---CEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccc
Confidence 68999966 9999999999999985 4899888765555555442222 1 111 12 2566899999754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.49 E-value=0.056 Score=43.11 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=48.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc------ChHHHh-----hcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN------DNHRII-----KEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~------s~~e~~-----~~aDvIila 131 (341)
.+|.|+|+|-+|...++.+...|. ..|++.++++++++..++ +|. ... +..+.+ ...|+||-+
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~---~~vi~~~~~~~k~~~ak~-lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGA---SRIIGVDINKDKFARAKE-FGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC---SEEEEECSCGGGHHHHHH-HTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEecchhHHHHHHHHHHHHhc---CceEEEcccHHHHHHHHH-hCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 479999999999998888888884 588899999888776655 775 211 111222 247899988
Q ss_pred eChHH
Q psy316 132 MKPQY 136 (341)
Q Consensus 132 V~~~~ 136 (341)
+-...
T Consensus 106 ~G~~~ 110 (176)
T d2fzwa2 106 IGNVK 110 (176)
T ss_dssp SCCHH
T ss_pred CCCHH
Confidence 86443
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.028 Score=48.10 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=37.8
Q ss_pred eEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 66 KVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 66 kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
|+.+| |.+.+|.++++.|++.|. +|++.+|++++++.+.+..++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~----~Vi~~~r~~~~l~~~~~~~~~ 52 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGA----KVIATDINESKLQELEKYPGI 52 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHGGGGGSTTE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEeCCHHHHHHHHhccCC
Confidence 67777 669999999999999995 999999999999888775554
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.37 E-value=0.078 Score=42.29 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cccC-----h-HHHh-----hcCCEEEE
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALND-----N-HRII-----KEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~s-----~-~e~~-----~~aDvIil 130 (341)
..+|.|+|+|.+|...+..+...|- .+|++.++++++++..++ +|+ ..+. . .+.. ...|++|-
T Consensus 29 g~~VlI~G~Gg~g~~~~~~~~~~g~---~~Vi~~~~~~~rl~~a~~-~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid 104 (175)
T d1cdoa2 29 GSTCAVFGLGAVGLAAVMGCHSAGA---KRIIAVDLNPDKFEKAKV-FGATDFVNPNDHSEPISQVLSKMTNGGVDFSLE 104 (175)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEECSCGGGHHHHHH-TTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCEEEEEecCCccchHHHHHHHHhh---chheeecchHHHHHHHHH-cCCcEEEcCCCcchhHHHHHHhhccCCcceeee
Confidence 4579999999999998888887773 689999999999887766 786 2211 1 1221 14788888
Q ss_pred eeChH
Q psy316 131 AMKPQ 135 (341)
Q Consensus 131 aV~~~ 135 (341)
++-..
T Consensus 105 ~~G~~ 109 (175)
T d1cdoa2 105 CVGNV 109 (175)
T ss_dssp CSCCH
T ss_pred ecCCH
Confidence 88644
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.36 E-value=0.05 Score=44.83 Aligned_cols=66 Identities=26% Similarity=0.167 Sum_probs=46.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc----cChHHHh------hcCCEEEEe
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL----NDNHRII------KEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~----~s~~e~~------~~aDvIila 131 (341)
..+|.|+|+|.+|...+......|. .+|++.++++++++..++ +|. .. .+..+.+ ...|++|-|
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga---~~Vi~~d~~~~rl~~a~~-~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~ 101 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGA---AVVIVGDLNPARLAHAKA-QGFEIADLSLDTPLHEQIAALLGEPEVDCAVDA 101 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESCHHHHHHHHH-TTCEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhcc---cceeeecccchhhHhhhh-ccccEEEeCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence 3579999999999777776666663 589999999999887766 676 21 1222211 147999988
Q ss_pred eC
Q psy316 132 MK 133 (341)
Q Consensus 132 V~ 133 (341)
+-
T Consensus 102 vG 103 (195)
T d1kola2 102 VG 103 (195)
T ss_dssp CC
T ss_pred cc
Confidence 74
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.35 E-value=0.12 Score=44.30 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=57.0
Q ss_pred CCCCCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChH
Q psy316 61 VPMWTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQ 135 (341)
Q Consensus 61 ~~m~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~ 135 (341)
|.++-|+.+| |.+.||.++++.|++.|. +|++++|++++++.+.+++ .+ ...++..+.+ .++
T Consensus 4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga----~V~~~~r~~~~l~~~~~~~-------~~--~~~~~~~~~~Dv~~~~ 70 (259)
T d1xq1a_ 4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGA----VIHTCARNEYELNECLSKW-------QK--KGFQVTGSVCDASLRP 70 (259)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHH-------HH--TTCCEEEEECCTTSHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHH-------Hh--cCCceEEEeccCCCHH
Confidence 4466667777 557899999999999995 9999999998887665431 11 1234444443 356
Q ss_pred HHHHHHHHhhhcccccC-CCcEEEEecC
Q psy316 136 YLDSAIQGLVNDKVTLN-SSRCIISMLV 162 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~-~~~iIVs~~a 162 (341)
.++.+++++ ...+ . +=.++|+.++
T Consensus 71 ~v~~~~~~~-~~~~--~g~idilvnnAG 95 (259)
T d1xq1a_ 71 EREKLMQTV-SSMF--GGKLDILINNLG 95 (259)
T ss_dssp HHHHHHHHH-HHHH--TTCCSEEEEECC
T ss_pred HHHHHHHHH-HHHh--CCCccccccccc
Confidence 777777776 4433 2 2247777644
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.34 E-value=0.076 Score=42.50 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=53.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--ccc--C----hHHHh-----hcCCEEEEe
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--ALN--D----NHRII-----KEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~~--s----~~e~~-----~~aDvIila 131 (341)
.+|.|+|+|-+|...+..+...|. .+|++.++++++.+..++ +|. ... + ..+.. ...|++|-+
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~---~~Vi~~~~~~~k~~~a~~-~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGA---ARIIGVDINKDKFAKAKE-VGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---SEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC---ceEEeecCcHHHHHHHHH-hCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 579999999999999998888873 689999999999887665 665 211 1 11211 247999999
Q ss_pred eCh-HHHHHHHHHh
Q psy316 132 MKP-QYLDSAIQGL 144 (341)
Q Consensus 132 V~~-~~v~~vl~~i 144 (341)
+-. ...++.+.-+
T Consensus 106 ~G~~~~~~~a~~~~ 119 (176)
T d2jhfa2 106 IGRLDTMVTALSCC 119 (176)
T ss_dssp SCCHHHHHHHHHHB
T ss_pred CCchhHHHHHHHHH
Confidence 864 4445544443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.34 E-value=0.022 Score=48.05 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
.+||.|||+|.-|...|..|.++|+ +|++++|+++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~----~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGV----DVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCC----CEEEEeCCCC
Confidence 4689999999999999999999995 9999998754
|
| >d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.31 E-value=0.0013 Score=50.08 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=55.5
Q ss_pred CCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCc
Q psy316 235 ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPG 314 (341)
Q Consensus 235 e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpg 314 (341)
++.||.+.|++++.|+++++. ++........+......+..++|+.+.++. +.+|..|.+.+.++.
T Consensus 2 PeeHD~~~A~vSHlPHlia~a---l~~~~~~~~~~~~~~~~~agggfrD~TRiA-----------~s~p~mW~dI~~~N~ 67 (110)
T d2g5ca1 2 PELHDYVFGVVSHLPHAVAFA---LVDTLIHMSTPEVDLFKYPGGGFKDFTRIA-----------KSDPIMWRDIFLENK 67 (110)
T ss_dssp HHHHHHHHHHHTHHHHHHHHH---HHHHHHHHCBTTBCGGGCCTTTGGGC---C-----------CSCHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHhhHHHHHHHH---HHHHHHHhhcchHHHHHHcchhHHHHHHHH-----------cCCHHHHHHHHHHHH
Confidence 467899999999999987764 333333333333334566777777777654 458999999999999
Q ss_pred hHHHHHHHHHHh
Q psy316 315 GSTIAGIHALEK 326 (341)
Q Consensus 315 G~t~~~l~~l~~ 326 (341)
......|..+++
T Consensus 68 ~~i~~~l~~~~~ 79 (110)
T d2g5ca1 68 ENVMKAIEGFEK 79 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888888876
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=94.30 E-value=0.017 Score=48.77 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=30.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
|+|+|||+|.-|.+.|..|.++|+ +|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~----~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGT----DAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTC----CEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC----CEEEEecCC
Confidence 689999999999999999999995 899999864
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=94.29 E-value=0.055 Score=46.42 Aligned_cols=94 Identities=12% Similarity=0.107 Sum_probs=54.7
Q ss_pred CCCeEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee----ChHH
Q psy316 63 MWTKVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM----KPQY 136 (341)
Q Consensus 63 m~~kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV----~~~~ 136 (341)
++-|+.|| |+ +-+|.++|+.|++.|. +|++..|+.++.+.+.+ .........+.+.++ +...
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~----~vii~~r~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~~~~~~ 70 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNL----KNFVILDRVENPTALAE--------LKAINPKVNITFHTYDVTVPVAE 70 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCC----SEEEEEESSCCHHHHHH--------HHHHCTTSEEEEEECCTTSCHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC----EEEEEECCcccHHHHHH--------HHhhCCCCCEEEEEeecCCCHHH
Confidence 34455555 44 6799999999999994 77777666555443322 111122334444443 2345
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
++++++.+ ...+ .+=.++|+.++..+.+.+++
T Consensus 71 ~~~~~~~~-~~~~--g~iDilvnnAG~~~~~~~~~ 102 (254)
T d1sbya1 71 SKKLLKKI-FDQL--KTVDILINGAGILDDHQIER 102 (254)
T ss_dssp HHHHHHHH-HHHH--SCCCEEEECCCCCCTTCHHH
T ss_pred HHHHHHHH-HHHc--CCCCEEEeCCCCCCHHHHHH
Confidence 77777776 5444 33348888766655544443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.28 E-value=0.013 Score=46.92 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=37.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
.+|.|+|+ |.+|...+..+...|. .+|+++++++++++.+++ +|.
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~---~~V~~~~~~~~~~~~~~~-~Ga 74 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSG---ATIIGVDVREEAVEAAKR-AGA 74 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC---CEEEEEESSHHHHHHHHH-HTC
T ss_pred CEEEEEeccccceeeeeeccccccc---ccccccccchhhHHHHHH-cCC
Confidence 47999995 9999998888887774 589999999998887765 564
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.20 E-value=0.025 Score=50.25 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
.+||+|||+|.-|.+.|..|++.|. .++|++++|+.
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~--~~~v~vfEk~~ 39 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKA--FDQVTLFERRG 39 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC--CSEEEEECSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCC--CCCEEEEECCC
Confidence 4689999999999999999988763 35899999874
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.049 Score=44.48 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=32.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
-++||+|||+|.-|..-|..|.+.|+ +|++++++++
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~----~Vtl~E~~~~ 77 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGH----QVTLFDAHSE 77 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTC----EEEEEESSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhcc----ceEEEeccCc
Confidence 46899999999999999999999995 9999998753
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.14 E-value=0.027 Score=42.29 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
+++++.|||+|.+|.-+|..|.+.|. +|+++.|.+.
T Consensus 21 ~p~~v~IiGgG~ig~E~A~~l~~~G~----~Vtlve~~~~ 56 (117)
T d1ebda2 21 VPKSLVVIGGGYIGIELGTAYANFGT----KVTILEGAGE 56 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC----EEEEEESSSS
T ss_pred cCCeEEEECCCccceeeeeeeccccc----EEEEEEecce
Confidence 45799999999999999999999995 9999988754
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.033 Score=46.82 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC-cCCCc------cccChHHHhhcCCEEEEee
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP-EPMDF------ALNDNHRIIKEAEYVFLAM 132 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~-~~~g~------~~~s~~e~~~~aDvIilaV 132 (341)
++||.|.|+ |-+|+.+++.|++.|. .++|++.+|++.+...-. ..... ...+..+++..+|++|.|+
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~--~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~ 88 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGL--FSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCL 88 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTC--CSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC--CCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccc
Confidence 367999976 9999999999999984 248999998764432211 11111 1233455667899999876
|
| >d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.06 E-value=0.015 Score=44.08 Aligned_cols=77 Identities=4% Similarity=-0.001 Sum_probs=54.0
Q ss_pred CCchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcC
Q psy316 235 ESMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPR---DMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQIC 311 (341)
Q Consensus 235 e~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~---~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~ 311 (341)
++.||.+.|++++.|++++.. ++...... -+. ..+.++...+++.+.++. +.+|..|.+.+.
T Consensus 2 PeeHD~~~A~iSHLPHlia~~---l~~~~~~~-~~~~~~~~~~~~ag~gfrD~tRiA-----------~s~p~mW~dI~~ 66 (114)
T d2f1ka1 2 PADHDQAVAWISHLPVMVSAA---LIQACAGE-KDGDILKLAQNLASSGFRDTSRVG-----------GGNPELGTMMAT 66 (114)
T ss_dssp HHHHHHHHHHHTHHHHHHHHH---HHHHHHTC-SCHHHHHHHHHHCCHHHHHHHTGG-----------GSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHH---HHHHHHhh-hhhhhHHHHHHHhhhhHHHHHHHH-----------ccCHHHHHHHHH
Confidence 456899999999999876653 33332221 122 234556677777776654 348999999999
Q ss_pred CCchHHHHHHHHHHh
Q psy316 312 SPGGSTIAGIHALEK 326 (341)
Q Consensus 312 tpgG~t~~~l~~l~~ 326 (341)
++.....+.|..+.+
T Consensus 67 ~N~~~i~~~l~~~~~ 81 (114)
T d2f1ka1 67 YNQRALLKSLQDYRQ 81 (114)
T ss_dssp HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888888866
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.022 Score=44.80 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAP 99 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r 99 (341)
..+++.|||.|.+|..-++.|+++|. +|+++..
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA----~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGC----KLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTC----EEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC----EEEEEeC
Confidence 35789999999999999999999995 8988854
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=93.98 E-value=0.039 Score=48.98 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=47.5
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhh--hhcCcCCCc--c---ccCh----HHHhhcCCEEEE
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFK--LHWPEPMDF--A---LNDN----HRIIKEAEYVFL 130 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~--~~l~~~~g~--~---~~s~----~e~~~~aDvIil 130 (341)
-+++|.|+|+ |.+|+++++.|++.|+ +|++..|++.+. ..+....|+ . ..+. ..+...+|.++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~----~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH----HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC----CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC----eEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 3678999985 9999999999999994 999998876543 233332243 1 1222 235668899988
Q ss_pred eeCh
Q psy316 131 AMKP 134 (341)
Q Consensus 131 aV~~ 134 (341)
..++
T Consensus 78 ~~~~ 81 (350)
T d1xgka_ 78 NTTS 81 (350)
T ss_dssp CCCS
T ss_pred eccc
Confidence 7764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.037 Score=44.44 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=49.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc----cChHHHh------hcCCEEEEe
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL----NDNHRII------KEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~----~s~~e~~------~~aDvIila 131 (341)
.+|.|+|+ |.+|....+-....|. +|++..+++++.+.+++ +|+ +. .+..+.+ ...|+||-+
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~----~vi~~~~~~~~~~~~~~-~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGL----KILGTAGTEEGQKIVLQ-NGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHH-TTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CEEEEEeccccccccccccccccCc----ccccccccccccccccc-cCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 57999996 9999998888878884 88888888888877766 776 22 1122222 125777776
Q ss_pred eChHHHHHHHHHh
Q psy316 132 MKPQYLDSAIQGL 144 (341)
Q Consensus 132 V~~~~v~~vl~~i 144 (341)
+-...+...++-+
T Consensus 105 ~g~~~~~~~~~~l 117 (174)
T d1yb5a2 105 LANVNLSKDLSLL 117 (174)
T ss_dssp CHHHHHHHHHHHE
T ss_pred ccHHHHHHHHhcc
Confidence 6554444444433
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.93 E-value=0.034 Score=42.26 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=32.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
+++++.|||+|.+|.-+|..|.+.|. +|+++.|++.
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~lG~----~Vtii~~~~~ 57 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRLGS----KVTVVEFQPQ 57 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSSS
T ss_pred CCCeEEEECCCchHHHHHHHHHhhCc----ceeEEEeccc
Confidence 45799999999999999999999995 9999998753
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=93.85 E-value=0.091 Score=45.47 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=51.9
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 66 KVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 66 kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|+.+| | .+.||.++++.|++.|. +|++++|++++++.+.++++ .++..+.+ .++.++++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga----~V~i~~r~~~~l~~~~~~~~------------~~~~~~~~Dv~~~~~~~~~ 69 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGA----KVAVLDKSAERLAELETDHG------------DNVLGIVGDVRSLEDQKQA 69 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHG------------GGEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHcC------------CCeeEEecccccHHHHHHH
Confidence 45555 5 48999999999999995 99999999988876655322 12333332 35667777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|..++
T Consensus 70 ~~~~-~~~~--g~idilvnnAG 88 (276)
T d1bdba_ 70 ASRC-VARF--GKIDTLIPNAG 88 (276)
T ss_dssp HHHH-HHHH--SCCCEEECCCC
T ss_pred HHHH-HHHh--CCccccccccc
Confidence 7766 4444 33346776543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=93.56 E-value=0.029 Score=39.49 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=30.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
++|||||.|-+|..++..-.+-|+ ++.+++.+++.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~----~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGI----AVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTE----EEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCC----EEEEEcCCCCC
Confidence 689999999999999998888885 99999986543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.41 E-value=0.046 Score=41.04 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
.++||.|||.|.+|.-+|..|.+.|. +|+++.|.+.
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~~G~----~Vtlve~~~~ 55 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVINGLGA----KTHLFEMFDA 55 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSSS
T ss_pred CCCEEEEECCChhhHHHHHHhhcccc----EEEEEeecch
Confidence 34789999999999999999999994 9999998753
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.39 E-value=0.099 Score=44.58 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=51.2
Q ss_pred CCCeEEEE-cc-cHHHHHHHHHHHh---cCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---Ch
Q psy316 63 MWTKVGFI-GA-GNMAQAVATSLIR---TGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KP 134 (341)
Q Consensus 63 m~~kIgiI-G~-G~mG~aia~~L~~---~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~ 134 (341)
|.-|++|| |+ +-+|.++++.|.+ .| ++|++++|++++++.+.+++ ...-....+.++.+ .+
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G----~~Vv~~~r~~~~l~~~~~~l-------~~~~~~~~~~~~~~Dvs~~ 72 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG----SVMLVSARSESMLRQLKEEL-------GAQQPDLKVVLAAADLGTE 72 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT----CEEEEEESCHHHHHHHHHHH-------HHHCTTSEEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCC----CEEEEEECCHHHHHHHHHHH-------HhhcCCceEEEEEccCCCH
Confidence 66789999 54 6899999999986 56 59999999999988776531 11112234555554 46
Q ss_pred HHHHHHHHHhhhc
Q psy316 135 QYLDSAIQGLVND 147 (341)
Q Consensus 135 ~~v~~vl~~i~~~ 147 (341)
..++++++.+ ..
T Consensus 73 ~~v~~l~~~~-~~ 84 (259)
T d1oaaa_ 73 AGVQRLLSAV-RE 84 (259)
T ss_dssp HHHHHHHHHH-HH
T ss_pred HHHHHHHHHH-HH
Confidence 7788887766 44
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=93.35 E-value=0.04 Score=46.87 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=28.8
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
|.|||+|-+|.+.|..|.+.|. +|+++++++
T Consensus 7 vvIIGaGi~Gls~A~~La~~G~----~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKENK----NTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC----CEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC----cEEEEeCCC
Confidence 9999999999999999999995 999999863
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.34 E-value=0.045 Score=41.27 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
++||.|||+|.+|.-+|..|.+.|. +|+++.|.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~----~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGI----DSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC----EEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccc----cceeeehhc
Confidence 4689999999999999999999884 999999864
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.28 E-value=0.076 Score=42.57 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=51.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc----cChHHHh------hcCCEEEEe
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL----NDNHRII------KEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~----~s~~e~~------~~aDvIila 131 (341)
.+|.|.|+ |.+|...++-....|. ++++..+++++.+.+++ +|+ +. .+..+.+ ...|+||-+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~----~vi~~~~~~~~~~~l~~-~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGA----RIYTTAGSDAKREMLSR-LGVEYVGDSRSVDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTC----EEEEEESSHHHHHHHHT-TCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CEEEEECCCCCcccccchhhccccc----cceeeeccccccccccc-ccccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence 47888885 9999999988877774 88888888888887766 675 21 1222222 236788877
Q ss_pred eChHHHHHHHHHh
Q psy316 132 MKPQYLDSAIQGL 144 (341)
Q Consensus 132 V~~~~v~~vl~~i 144 (341)
+..+.+...++-+
T Consensus 102 ~g~~~~~~~~~~l 114 (183)
T d1pqwa_ 102 LAGEAIQRGVQIL 114 (183)
T ss_dssp CCTHHHHHHHHTE
T ss_pred ccchHHHHHHHHh
Confidence 7766666555443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.25 E-value=0.038 Score=47.47 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=30.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
++||.|||+|.-|.+-|..|.++|+ +|+++++++
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~----~V~vlE~~~ 63 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGH----QVTVLEASE 63 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTC----EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC----CEEEEeCCC
Confidence 3689999999999999999999995 999999864
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.24 E-value=0.04 Score=46.48 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
+++|.|||+|.-|..+|..|.++|. ++|.|++|+++
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi---~~V~V~Er~~~ 36 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGI---GKVTLLESSSE 36 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC---CeEEEEeCCCC
Confidence 3689999999999999999999994 48999998754
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.05 E-value=0.17 Score=42.79 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=52.1
Q ss_pred CCCeEEEE-cc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHH
Q psy316 63 MWTKVGFI-GA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYL 137 (341)
Q Consensus 63 m~~kIgiI-G~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v 137 (341)
|.+|..+| |+ +-+|.++++.|++.|. ...|++..|++++++.+++..+ ..+.++.+ .+..+
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~--~~~Vi~~~R~~~~~~~l~~~~~------------~~~~~~~~Dvs~~~~v 66 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKN--IRHIIATARDVEKATELKSIKD------------SRVHVLPLTVTCDKSL 66 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTT--CCEEEEEESSGGGCHHHHTCCC------------TTEEEEECCTTCHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCC--CCEEEEEeCCHHHHHHHHHhhC------------CceEEEEEecCCHHHH
Confidence 55444444 55 8999999999999984 2368888999988877665321 12333332 45677
Q ss_pred HHHHHHhhhcccccCC--CcEEEEecC
Q psy316 138 DSAIQGLVNDKVTLNS--SRCIISMLV 162 (341)
Q Consensus 138 ~~vl~~i~~~~l~~~~--~~iIVs~~a 162 (341)
+++++.+ ...+ .. =.++|..++
T Consensus 67 ~~~~~~i-~~~~--~~~~idilinnAG 90 (250)
T d1yo6a1 67 DTFVSKV-GEIV--GSDGLSLLINNAG 90 (250)
T ss_dssp HHHHHHH-HHHH--GGGCCCEEEECCC
T ss_pred HHHHHHH-HHHh--CCCCeEEEEEcCc
Confidence 7777766 5433 21 136676543
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.54 Score=35.30 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=66.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~ 139 (341)
..||.+-|. |.-|+.-++.+++.|. +|. ...+|.+.-+ +-.|+ ++++..|+++ .+|.=++-|||....+
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~yGT----~vV-aGVtPgkgG~--~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~d 78 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAYGT----KMV-GGVTPGKGGT--THLGLPVFNTVREAVAATGATASVIYVPAPFCKD 78 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC----EEE-EEECTTCTTE--EETTEEEESSHHHHHHHHCCCEEEECCCGGGHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCC----ceE-EEEccCCCCc--ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHH
Confidence 458999998 9999999999999994 443 3334544322 12477 8888888766 6899999999876555
Q ss_pred -HHHHhhhcccccCCCcEEEEecCCCCHHHHH
Q psy316 140 -AIQGLVNDKVTLNSSRCIISMLVGVDLETLK 170 (341)
Q Consensus 140 -vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~ 170 (341)
+++.+ ...+ ++||.++-|++.-.+.
T Consensus 79 A~~EAi-~agI-----~~iV~ITEgIP~~D~~ 104 (119)
T d2nu7a1 79 SILEAI-DAGI-----KLIITITEGIPTLDML 104 (119)
T ss_dssp HHHHHH-HTTC-----SEEEECCCCCCHHHHH
T ss_pred HHHHHH-HCCC-----CEEEEecCCCCHHHHH
Confidence 55555 4444 4777788999975543
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.98 E-value=0.037 Score=47.11 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=45.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh---------hcCcCCCc--c------ccChHHHhhcC
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKL---------HWPEPMDF--A------LNDNHRIIKEA 125 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~---------~l~~~~g~--~------~~s~~e~~~~a 125 (341)
++||.|+|+ |.+|+.+++.|+++|+ +|++.+|++.... .+.. .++ . ..+..+.+..+
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~----~V~~l~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGH----PTFLLVRESTASSNSEKAQLLESFKA-SGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEECCCCCTTTTHHHHHHHHHHHT-TTCEEECCCTTCHHHHHHHHHTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC----eEEEEECCCccccchhHHHHHHhhcc-CCcEEEEeecccchhhhhhhhhc
Confidence 679999986 9999999999999994 9999998654321 1111 122 1 11223456788
Q ss_pred CEEEEeeCh
Q psy316 126 EYVFLAMKP 134 (341)
Q Consensus 126 DvIilaV~~ 134 (341)
+.++.+...
T Consensus 78 ~~vi~~~~~ 86 (307)
T d1qyca_ 78 DVVISTVGS 86 (307)
T ss_dssp SEEEECCCG
T ss_pred eeeeecccc
Confidence 988887754
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.96 E-value=0.045 Score=44.57 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=29.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
+||.|||+|.-|.+.|..|.++|+ ++|+|+++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~---~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGI---TDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTC---CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCC---CcEEEEECCC
Confidence 379999999999999999999994 3799999864
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.95 E-value=0.076 Score=45.80 Aligned_cols=83 Identities=12% Similarity=0.177 Sum_probs=55.1
Q ss_pred CeEEEE--cccHHHHHHHHHHHhc-CCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHH
Q psy316 65 TKVGFI--GAGNMAQAVATSLIRT-GLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 65 ~kIgiI--G~G~mG~aia~~L~~~-G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~ 138 (341)
++|++| |.+-+|.++++.|++. | .+|++++|++++++.+.+++ .+ ...++.++.+ ..+.++
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g----~~Vi~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~Dvs~~~sv~ 69 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFS----GDVVLTARDVTRGQAAVQQL-------QA--EGLSPRFHQLDIDDLQSIR 69 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSS----SEEEEEESSHHHHHHHHHHH-------HH--TTCCCEEEECCTTCHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCC----CEEEEEECCHHHHHHHHHHH-------Hh--cCCcEEEEEEecCCHHHHH
Confidence 689999 6689999999999975 6 49999999999887665531 11 1122333333 356777
Q ss_pred HHHHHhhhcccccCCCcEEEEecCCC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLVGV 164 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~agi 164 (341)
++++++ ...+ .+=.++|+. +|+
T Consensus 70 ~~~~~~-~~~~--g~iDiLVnN-AGi 91 (275)
T d1wmaa1 70 ALRDFL-RKEY--GGLDVLVNN-AGI 91 (275)
T ss_dssp HHHHHH-HHHH--SSEEEEEEC-CCC
T ss_pred HHHHHH-HHhc--CCcEEEEEc-CCc
Confidence 777777 5444 222467765 444
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.89 E-value=0.048 Score=45.70 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=30.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
+||.|||+|.-|.+-|..|.++|+ +|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~----~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGL----NVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSC----EEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC----CEEEEeCCC
Confidence 789999999999999999999995 999999764
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.75 E-value=0.65 Score=34.95 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=66.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~ 139 (341)
..||.+-|. |..|+.-++.+++.|. +|. ...+|.+--+-- .|+ ++++..|+++ .+|.-++.|||....+
T Consensus 7 ~trVivQGiTG~~G~~ht~~m~~yGT----~iV-aGVtPgkgG~~~--~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~d 79 (121)
T d1oi7a1 7 ETRVLVQGITGREGQFHTKQMLTYGT----KIV-AGVTPGKGGMEV--LGVPVYDTVKEAVAHHEVDASIIFVPAPAAAD 79 (121)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC----EEE-EEECTTCTTCEE--TTEEEESSHHHHHHHSCCSEEEECCCHHHHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCC----ceE-eeeecCCCCcEE--ECCchHhhHHHHHHhcCCeEEEEeeCHHHHHH
Confidence 358999998 9999999999999994 443 333444432211 367 7888888765 6999999999876555
Q ss_pred -HHHHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 140 -AIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 140 -vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
+++.+ ...+ ++||.++-|++.-.+.+
T Consensus 80 Ai~EAi-~agI-----~liv~ITEgVPv~Dm~~ 106 (121)
T d1oi7a1 80 AALEAA-HAGI-----PLIVLITEGIPTLDMVR 106 (121)
T ss_dssp HHHHHH-HTTC-----SEEEECCSCCCHHHHHH
T ss_pred HHHHHH-hCCC-----cEEEEecCCCCHHHHHH
Confidence 55555 4434 47788889999755433
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=92.72 E-value=0.18 Score=42.57 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=54.2
Q ss_pred CeEEEE-cc-cHHHHHHHHHHHhcCCC---CCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHH
Q psy316 65 TKVGFI-GA-GNMAQAVATSLIRTGLC---IPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQY 136 (341)
Q Consensus 65 ~kIgiI-G~-G~mG~aia~~L~~~G~~---~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~ 136 (341)
++|.+| |+ +-+|.++++.|.+.|.- ....|.+++|++++++.+.+++ .+ ....+.++.+ .+..
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~-------~~--~g~~~~~~~~Dvt~~~~ 71 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC-------RA--EGALTDTITADISDMAD 71 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHH-------HT--TTCEEEEEECCTTSHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEecCCCHHH
Confidence 466666 55 77999999999999940 0113889999998887765421 00 1233444443 3567
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++++ ...+ .+=.++|+.++
T Consensus 72 v~~~~~~~-~~~~--g~iDilvnnAg 94 (240)
T d2bd0a1 72 VRRLTTHI-VERY--GHIDCLVNNAG 94 (240)
T ss_dssp HHHHHHHH-HHHT--SCCSEEEECCC
T ss_pred HHHHHHHH-HHHc--CCcceeecccc
Confidence 88888777 5544 33347776643
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.70 E-value=0.069 Score=47.49 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
+.|||.|.| +|-+|+.|++.|++.| ++|++.++.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g----~~V~~~d~~ 48 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEG----HYVIASDWK 48 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT----CEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc----CEEEEEeCC
Confidence 578999996 5999999999999998 499998764
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.70 E-value=0.051 Score=45.19 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=30.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
+||+|||+|.-|..-|..|.+++. .++|+++++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~--~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHS--RAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS--SCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCC--CCeEEEEeCCCC
Confidence 489999999999999999988752 469999998753
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.70 E-value=0.053 Score=44.12 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=29.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
|||.|||+|..|..+|..|.+.+ +..+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~--~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLH--PDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHC--TTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcC--CCCeEEEEeCCC
Confidence 78999999999999999998865 245899998754
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.64 E-value=0.062 Score=40.78 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
++.++.|||+|.+|.-+|..|.+.|. +|+++.|+
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~lG~----~Vtii~~~ 52 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGIGL----DVTVMVRS 52 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC----CEEEEESS
T ss_pred CCCeEEEECCCccHHHHHHHHhhcCC----eEEEEEec
Confidence 45689999999999999999999994 89988775
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=92.64 E-value=0.085 Score=45.04 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=49.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHH
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQG 143 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~ 143 (341)
+.+-|.| .+.||.++++.|++.|. +|.+.+|+++..+...+ .+.. .-.+|+ ..+..+++++++
T Consensus 6 K~alITGas~GIG~aia~~la~~G~----~V~~~~~~~~~~~~~~~-~~~~-------~~~~Dv----~~~~~v~~~~~~ 69 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGA----LVALCDLRPEGKEVAEA-IGGA-------FFQVDL----EDERERVRFVEE 69 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSTTHHHHHHH-HTCE-------EEECCT----TCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH-cCCe-------EEEEeC----CCHHHHHHHHHH
Confidence 3444445 58999999999999995 99999998765443221 1210 001222 256778888877
Q ss_pred hhhcccccCCCcEEEEecC
Q psy316 144 LVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 144 i~~~~l~~~~~~iIVs~~a 162 (341)
+ ...+ .+=.++|+.++
T Consensus 70 ~-~~~~--G~iDiLVnnAG 85 (248)
T d2d1ya1 70 A-AYAL--GRVDVLVNNAA 85 (248)
T ss_dssp H-HHHH--SCCCEEEECCC
T ss_pred H-HHhc--CCCCeEEEeCc
Confidence 6 5444 33347787643
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.62 E-value=0.068 Score=40.28 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=31.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
++.++.|||.|.+|.-+|..|.+.|. +|++..+++
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~----~Vtiv~~~~ 55 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGA----EVTVLEAMD 55 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC----EEEEEESSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCC----ceEEEEeec
Confidence 45789999999999999999999994 999988764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=92.54 E-value=0.049 Score=48.19 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
.+||.|||+|--|...|..|.++|+ +|++++++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~----~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGH----QVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC----EEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCC----CEEEEECCC
Confidence 4799999999999999999999884 999998865
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=92.51 E-value=0.12 Score=43.37 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=32.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
+++-|.|+ +-||.++++.|++.|. +|++++|+++.++....
T Consensus 5 K~~lVTGas~GIG~aia~~l~~~Ga----~V~~~~r~~~~l~~~~~ 46 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLSQEGA----EVTICARNEELLKRSGH 46 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHTCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHhcCC
Confidence 34555565 7899999999999995 99999999988776543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.49 E-value=0.4 Score=40.91 Aligned_cols=84 Identities=10% Similarity=0.056 Sum_probs=52.3
Q ss_pred CCCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCC-hhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHH
Q psy316 63 MWTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPS-ERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQY 136 (341)
Q Consensus 63 m~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~-~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~ 136 (341)
++=|+.+| |.+.+|.++++.|++.|. +|++.+|+ ++.++.+.++ ..+ ...++.++.+ .+++
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga----~Vvi~~~~~~~~~~~~~~~-------~~~--~g~~~~~~~~D~~~~~~ 82 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC----KVIVNYANSTESAEEVVAA-------IKK--NGSDAACVKANVGVVED 82 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHH-------HHH--TTCCEEEEECCTTCHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEeCCchHHHHHHHHH-------HHh--hCCceeeEeCCCCCHHH
Confidence 43456666 469999999999999995 89888765 4555544331 000 1234555444 4667
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+.+.++++ ...+ ..=.++|...+
T Consensus 83 v~~~~~~~-~~~~--g~idilV~nag 105 (272)
T d1g0oa_ 83 IVRMFEEA-VKIF--GKLDIVCSNSG 105 (272)
T ss_dssp HHHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHHH-HHHh--CCCCccccccc
Confidence 88888776 5544 33346676544
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.03 Score=47.64 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=34.1
Q ss_pred CCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 64 WTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 64 ~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
+=|+++| |++.||.++++.|++.|. +|++.+|++++++.+.+
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G~----~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQGA----SAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEECTTSSHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEeCChHHHHHHHH
Confidence 3467777 558899999999999995 99999999887766544
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.077 Score=40.28 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
++++.|||.|.+|.-+|..|.+.|. +|+++.|++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~----~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGS----KTSLMIRHD 55 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSS
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCc----EEEEEeecc
Confidence 4789999999999999999999995 999999874
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.25 Score=42.24 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=33.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCc
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPE 109 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~ 109 (341)
+++-|.|+ +-||.++|+.|++.|. +|++.+|++++++.+.+
T Consensus 15 K~alITGassGIG~aiA~~la~~G~----~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGA----HVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHH
Confidence 45555566 6799999999999995 99999999999887655
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.30 E-value=0.29 Score=41.36 Aligned_cols=83 Identities=14% Similarity=0.253 Sum_probs=48.8
Q ss_pred CCCeEE-EEcc-c--HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChH
Q psy316 63 MWTKVG-FIGA-G--NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQ 135 (341)
Q Consensus 63 m~~kIg-iIG~-G--~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~ 135 (341)
++-|+. |.|+ | -+|.++++.|++.|. +|.+.+|+++..+...+ ..+ ...+..++.+ .+.
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga----~V~i~~~~~~~~~~~~~--------~~~--~~~~~~~~~~D~~~~~ 71 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA----EVALSYQAERLRPEAEK--------LAE--ALGGALLFRADVTQDE 71 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTC----EEEEEESSGGGHHHHHH--------HHH--HTTCCEEEECCTTCHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCC----EEEEEeCcHHHHHHHHH--------hhh--ccCcccccccccCCHH
Confidence 444555 4476 4 499999999999995 89999988544332211 011 1112222322 466
Q ss_pred HHHHHHHHhhhcccccCCCcEEEEecC
Q psy316 136 YLDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 136 ~v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++.+++++ ...+ .+=.++|+.++
T Consensus 72 ~v~~~~~~~-~~~~--g~iDilVnnag 95 (256)
T d1ulua_ 72 ELDALFAGV-KEAF--GGLDYLVHAIA 95 (256)
T ss_dssp HHHHHHHHH-HHHH--SSEEEEEECCC
T ss_pred HHHHHHHHH-HHhc--CCceEEEeccc
Confidence 778888776 5444 33246776644
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.17 E-value=0.079 Score=39.49 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=31.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
+++++.|||+|..|.-+|..|.+.|. +|++..|.+.
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~~g~----~Vtlve~~~~ 55 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRKLGA----QVSVVEARER 55 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTC----EEEEECSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHhhccc----ceEEEeeecc
Confidence 45799999999999999999999994 9999988653
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.11 Score=45.46 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=28.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP 99 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r 99 (341)
++||.|.|+ |-+|+.+++.|++.|+ +|++++|
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~----~V~~~d~ 33 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGH----EVTVVDN 33 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC----EEEEEeC
Confidence 478999966 9999999999999984 8998875
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.15 E-value=0.076 Score=40.20 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
.++|.|||+|.+|.-+|..|.+.|. +|+++.+++.-
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~----~Vtli~~~~~~ 65 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGV----HVSLVETQPRL 65 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESSSST
T ss_pred CCeEEEECcchhHHHHHHHhhcccc----eEEEEeecccc
Confidence 4689999999999999999999985 99999987643
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.06 E-value=0.33 Score=41.41 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=53.4
Q ss_pred CCCeEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChh-hhhhcCcCCCccccChHHHhhcCCEEEEee---ChHH
Q psy316 63 MWTKVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSER-FKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQY 136 (341)
Q Consensus 63 m~~kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e-~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~ 136 (341)
++-|+.+| |.+.||.++++.|++.|. +|.+.+|+.+ .++.+.++ ..+ ...+++++.+ .++.
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~----~Vv~~~r~~~~~~~~~~~~-------~~~--~g~~~~~~~~Dvt~~~~ 71 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKA----KVVVNYRSKEDEANSVLEE-------IKK--VGGEAIAVKGDVTVESD 71 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHH-------HHH--TTCEEEEEECCTTSHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCcHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHH
Confidence 34467777 568899999999999995 9999998754 44444331 011 1234454444 4667
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++++++ ...+ .+=.++|+.++
T Consensus 72 v~~~~~~~-~~~~--G~iDiLVnnAG 94 (261)
T d1geea_ 72 VINLVQSA-IKEF--GKLDVMINNAG 94 (261)
T ss_dssp HHHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHHH-HHHh--CCCCEeeccce
Confidence 88888776 4444 33347787644
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.02 E-value=0.083 Score=41.29 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
+||.|||+|..|..+|..|.+.+. ..+|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~--~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADP--SIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCT--TSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCC--CCcEEEEECCC
Confidence 699999999999999999999873 34899998875
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.92 E-value=0.098 Score=41.85 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=47.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHH---H---hhcCCEEEEeeChH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHR---I---IKEAEYVFLAMKPQ 135 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e---~---~~~aDvIilaV~~~ 135 (341)
..+|.|.|+ |.+|...++.....|. +|++.++++++++.+++ +|+ ..-+..+ . -..+|+||=++.+
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~----~vi~~~~~~~~~~~~~~-lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~- 101 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGL----RVLAAASRPEKLALPLA-LGAEEAATYAEVPERAKAWGGLDLVLEVRGK- 101 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTC----EEEEEESSGGGSHHHHH-TTCSEEEEGGGHHHHHHHTTSEEEEEECSCT-
T ss_pred CCEEEEEeccccchhhhhhhhccccc----ccccccccccccccccc-cccceeeehhhhhhhhhccccccccccccch-
Confidence 357999995 9999998887777784 88888888888887766 676 2211111 1 1246777766653
Q ss_pred HHHHHH
Q psy316 136 YLDSAI 141 (341)
Q Consensus 136 ~v~~vl 141 (341)
.+.+.+
T Consensus 102 ~~~~~~ 107 (171)
T d1iz0a2 102 EVEESL 107 (171)
T ss_dssp THHHHH
T ss_pred hHHHHH
Confidence 344433
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.074 Score=45.26 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=34.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPM 111 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~ 111 (341)
+++-|.|+ +.||.++++.|++.|. +|++.+|++++++.+.++.
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~----~V~~~~r~~~~l~~~~~~~ 51 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGA----RVVAVSRTQADLDSLVREC 51 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEECCHHHHHHHHHhc
Confidence 34545555 8899999999999995 9999999999888776543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=91.85 E-value=0.26 Score=41.84 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=49.1
Q ss_pred CCeEEEEcc-c--HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee-ChHHHHH
Q psy316 64 WTKVGFIGA-G--NMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM-KPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G--~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV-~~~~v~~ 139 (341)
.+++.|.|+ | -||.++|+.|++.|. +|++.+|+++..+.+++ ..+....+.++..-+ .+..+.+
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga----~V~i~~r~~~~~~~~~~--------l~~~~~~~~~~~~d~~~~~~~~~ 72 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGA----TLAFTYLNESLEKRVRP--------IAQELNSPYVYELDVSKEEHFKS 72 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC----EEEEEESSTTTHHHHHH--------HHHHTTCCCEEECCTTCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHHH--------HHhhCCceeEeeecccchhhHHH
Confidence 456667786 5 499999999999995 99999998542222211 111122334433333 3456667
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.++ ...+ .+=.++|...+
T Consensus 73 ~~~~~-~~~~--g~id~lV~nag 92 (274)
T d2pd4a1 73 LYNSV-KKDL--GSLDFIVHSVA 92 (274)
T ss_dssp HHHHH-HHHT--SCEEEEEECCC
T ss_pred HHHHH-HHHc--CCCCeEEeecc
Confidence 77666 4444 33345665543
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.84 E-value=0.2 Score=42.25 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=46.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHH
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAI 141 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl 141 (341)
+.+++-|.|+ +.||.++++.|++.|. +|++.+|+.+..+.+.. + .+|+ ..++.+++++
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga----~V~~~~r~~~~~~~~~~---~----------~~Dv----~~~~~v~~~~ 64 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGH----KVAVTHRGSGAPKGLFG---V----------EVDV----TDSDAVDRAF 64 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSSCCCTTSEE---E----------ECCT----TCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCcchhcCceE---E----------EEec----CCHHHHHHHH
Confidence 3444555555 6799999999999995 99999998655443211 1 0111 1345666777
Q ss_pred HHhhhcccccCCCcEEEEecC
Q psy316 142 QGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++ ...+ .+=.++|+.++
T Consensus 65 ~~~-~~~~--g~iDiLVnnAG 82 (237)
T d1uzma1 65 TAV-EEHQ--GPVEVLVSNAG 82 (237)
T ss_dssp HHH-HHHH--SSCSEEEEECS
T ss_pred HHH-HHhc--CCceEEEeeec
Confidence 666 4444 32247777644
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.76 E-value=0.1 Score=39.38 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=30.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
+++.|||.|.+|.-+|..|.+.|. +|+++.|++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~----~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGY----HVKLIHRGA 65 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTC----EEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHhhcccc----eEEEEeccc
Confidence 689999999999999999999984 999999875
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.75 E-value=0.014 Score=48.51 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=22.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGL 88 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~ 88 (341)
|||.|||+|-+|.+.|..|.++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCC
Confidence 689999999999999999999984
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=91.64 E-value=0.16 Score=41.85 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=35.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
+||-+||.|.-|+.++.+|.+.|. +..+.+..|-+.+.+....
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~-~~v~~iainTD~~~L~~~~ 43 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGI-HGVEFVAVNTDLQVLEASN 43 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCC-TTEEEEEEESCHHHHHTCC
T ss_pred CeEEEEEeCchHHHHHHHHHHcCC-CceEEEEEcCCHHHHhcCC
Confidence 589999999999999999999884 4456778888888777543
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.64 E-value=0.23 Score=41.39 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=37.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
++.||.|||.|.-|+.++..|.+.|. ...+.+.+|.+.+.+....
T Consensus 14 ~~~ki~ViGvGGaG~n~v~~l~~~~~-~~v~~iainTD~~~L~~~~ 58 (209)
T d2vapa1 14 TKAKITVVGCGGAGNNTITRLKMEGI-EGAKTVAINTDAQQLIRTK 58 (209)
T ss_dssp TCCCEEEEEEHHHHHHHHHHHHHHTC-TTEEEEEEESBHHHHHTSC
T ss_pred cCCcEEEEEeCChHHHHHHHHHHcCC-CceEEEEEeCCHHHHhcCC
Confidence 56799999999999999999999884 4456778888887777654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=91.62 E-value=0.069 Score=45.73 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=45.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhh--------hhhcCcCCCc--c---ccC---hHHHhhcCC
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERF--------KLHWPEPMDF--A---LND---NHRIIKEAE 126 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~--------~~~l~~~~g~--~---~~s---~~e~~~~aD 126 (341)
++||.|+|+ |.+|+.+++.|++.|+ +|++..|++.. ...+.. .++ . ..+ ..+....++
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~----~V~~~~R~~~~~~~~~~~~~~~~~~-~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGH----PTYVLFRPEVVSNIDKVQMLLYFKQ-LGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC----CEEEECCSCCSSCHHHHHHHHHHHT-TTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC----EEEEEECCCcccchhHHHHHhhhcc-CCcEEEEeecccchhhhhhccCcc
Confidence 578999985 9999999999999994 99999986432 112222 233 1 112 234567889
Q ss_pred EEEEeeCh
Q psy316 127 YVFLAMKP 134 (341)
Q Consensus 127 vIilaV~~ 134 (341)
.++.++++
T Consensus 78 ~~~~~~~~ 85 (312)
T d1qyda_ 78 VVISALAG 85 (312)
T ss_dssp EEEECCCC
T ss_pred hhhhhhhh
Confidence 98887753
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=91.59 E-value=0.081 Score=45.64 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=29.4
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
+|.|||+|-+|.+.|..|.+.|. .+|++.+|++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~---~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGW---NNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC---CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCC---CcEEEEeCCC
Confidence 69999999999999999999984 4799999864
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.57 E-value=1 Score=34.22 Aligned_cols=94 Identities=12% Similarity=0.172 Sum_probs=67.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhh--cCCEEEEeeChHHHHH
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIK--EAEYVFLAMKPQYLDS 139 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~--~aDvIilaV~~~~v~~ 139 (341)
..||.+-|. |.-|+.-++.+++.|. +|. ...+|.+--.- -.|+ ++++..|+.+ .+|.-++-|||....+
T Consensus 15 ~TrVivQGiTG~~G~~ht~~m~~YGT----~iV-aGVtPgKgG~~--~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~d 87 (130)
T d1euca1 15 NTKVICQGFTGKQGTFHSQQALEYGT----NLV-GGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYVPPPFAAA 87 (130)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTC----EEE-EEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHHHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHhcC----CeE-EeeccCCCCcc--ccCccchhhHHHHHHhcCCcEEEEecCHHHHHH
Confidence 468999998 9999999999999994 544 22344432221 1367 7888888876 7999999999876555
Q ss_pred -HHHHhhhcccccCCCcEEEEecCCCCHHHHH
Q psy316 140 -AIQGLVNDKVTLNSSRCIISMLVGVDLETLK 170 (341)
Q Consensus 140 -vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~ 170 (341)
+++.+ ...+ ++||.++-|++.-.+-
T Consensus 88 Ai~EAi-~agI-----~liV~ITEgIPv~Dm~ 113 (130)
T d1euca1 88 AINEAI-DAEV-----PLVVCITEGIPQQDMV 113 (130)
T ss_dssp HHHHHH-HTTC-----SEEEECCCCCCHHHHH
T ss_pred HHHHHH-hCCC-----CEEEEecCCCCHHHHH
Confidence 55555 4444 4778888999975543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.15 Score=40.97 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=53.0
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeC-hHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMK-PQYLDSAI 141 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~-~~~v~~vl 141 (341)
.++|.|||-+. +|..++.-|.+.|. .|++++... .+..+.++++|+||.++- |..+.
T Consensus 37 GK~v~VIGrS~~VG~Pla~lL~~~ga----tVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p~~i~--- 95 (166)
T d1b0aa1 37 GLNAVVIGASNIVGRPMSMELLLAGC----TTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGFIP--- 95 (166)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTTC----EEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTCBC---
T ss_pred cceEEEEeccccccHHHHHHHHHhhc----ccccccccc--------------chhHHHHhhhhHhhhhccCccccc---
Confidence 57899999977 89999998888884 898886431 245667889999999994 54321
Q ss_pred HHhhhcccccCCCcEEEEe
Q psy316 142 QGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 142 ~~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||++
T Consensus 96 ----~~~v--k~g~vvIDv 108 (166)
T d1b0aa1 96 ----GDWI--KEGAIVIDV 108 (166)
T ss_dssp ----TTTS--CTTCEEEEC
T ss_pred ----cccc--CCCcEEEec
Confidence 3346 788899876
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=91.48 E-value=0.5 Score=39.75 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=52.6
Q ss_pred EEEE--cccHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 67 VGFI--GAGNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 67 IgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
|.+| |.+.||.++++.|++.|. +|.+. .|+++.++.+.++ ..+ ...+++++.+ .++.++++
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga----~V~i~~~~~~~~~~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~ 69 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGC----KVLVNYARSAKAAEEVSKQ-------IEA--YGGQAITFGGDVSKEADVEAM 69 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHH-------HHH--HTCEEEEEECCTTSHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC----EEEEEeCCCHHHHHHHHHH-------HHH--cCCcEEEEeCCCCCHHHHHHH
Confidence 6666 568899999999999995 88774 6777777766542 111 1234555544 46678888
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++++ ...+ .+=.++|+.++
T Consensus 70 ~~~~-~~~~--g~iDiLVnnAg 88 (244)
T d1edoa_ 70 MKTA-IDAW--GTIDVVVNNAG 88 (244)
T ss_dssp HHHH-HHHS--SCCSEEEECCC
T ss_pred HHHH-HHHc--CCCCccccccc
Confidence 8877 5544 33347777643
|
| >d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=91.47 E-value=0.13 Score=39.31 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=53.5
Q ss_pred CchhHHHHHhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCch
Q psy316 236 SMMNSFGAIAGSGCAYLFLVMDAMADGAVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGG 315 (341)
Q Consensus 236 ~~~d~~~al~g~gpa~~~~~~eal~ea~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG 315 (341)
..||..++++.+.|+++.. +++....+.+.+......+...+++.....+.+ + .+.+|+.|.+.+.++..
T Consensus 3 ~eHD~~~A~ishLpH~~~~---al~~~l~~~~~~~~~~~~~a~~~fr~~l~~~tR-I------a~~~p~lw~dI~~~N~~ 72 (128)
T d2pv7a1 3 TEHDHNMTYIQALRHFSTF---ANGLHLSKQPINLANLLALSSPIYRLELAMIGR-L------FAQDAELYADIIMDKSE 72 (128)
T ss_dssp HHHHHHHHHHTHHHHHHHH---HHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHH-H------HTSCHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHcCcchhHHHHHccHhHhhHHHHHHH-H------HCCCHHHHHHHHHHCHH
Confidence 4689999999999987765 455555678899888888888777654322221 1 23489999999998865
Q ss_pred HHHHHHHHHHh
Q psy316 316 STIAGIHALEK 326 (341)
Q Consensus 316 ~t~~~l~~l~~ 326 (341)
. ...|..|.+
T Consensus 73 ~-~~~l~~~~~ 82 (128)
T d2pv7a1 73 N-LAVIETLKQ 82 (128)
T ss_dssp C-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 4 455666554
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=91.39 E-value=0.3 Score=40.98 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=29.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
.||.|.|+|.-|..+++.|.+.+. .+++++||.
T Consensus 27 ~riv~~GAGsAg~gia~~l~~~~~---~~i~~~D~~ 59 (222)
T d1vl6a1 27 VKVVVNGIGAAGYNIVKFLLDLGV---KNVVAVDRK 59 (222)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC---CEEEEEETT
T ss_pred cEEEEEChHHHHHHHHHHHHHhcc---cceEeecce
Confidence 689999999999999999999885 689999984
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.2 Score=40.28 Aligned_cols=71 Identities=6% Similarity=0.157 Sum_probs=53.2
Q ss_pred CCeEEEEcccH-HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHH
Q psy316 64 WTKVGFIGAGN-MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQ 142 (341)
Q Consensus 64 ~~kIgiIG~G~-mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~ 142 (341)
.++|.|||-++ .|..++.-|.+.|. .|++++... .+..+..+++|+||.++....+ +.
T Consensus 39 Gk~vvVIGrS~iVGrPLa~lL~~~ga----tVt~~~~~t--------------~~l~~~~~~aDivi~a~G~~~~---i~ 97 (170)
T d1a4ia1 39 GRHAVVVGRSKIVGAPMHDLLLWNNA----TVTTCHSKT--------------AHLDEEVNKGDILVVATGQPEM---VK 97 (170)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTC----EEEEECTTC--------------SSHHHHHTTCSEEEECCCCTTC---BC
T ss_pred cceEEEEecCCccchHHHHHHHhccC----ceEEEeccc--------------ccHHHHHhhccchhhccccccc---cc
Confidence 47899999976 89999999999884 899887532 1345667889999999964322 11
Q ss_pred HhhhcccccCCCcEEEEe
Q psy316 143 GLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 143 ~i~~~~l~~~~~~iIVs~ 160 (341)
...+ +++.+||+.
T Consensus 98 ---~~~v--k~g~iviDv 110 (170)
T d1a4ia1 98 ---GEWI--KPGAIVIDC 110 (170)
T ss_dssp ---GGGS--CTTCEEEEC
T ss_pred ---cccc--cCCCeEecc
Confidence 2346 788899987
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.26 E-value=0.077 Score=44.80 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=28.4
Q ss_pred CeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 65 TKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 65 ~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|||.+| | .+-||.++++.|.+.|. +|++.+|+++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga----~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGH----QIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECChH
Confidence 678777 4 57899999999999995 9999998754
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.18 E-value=0.092 Score=39.74 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=32.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
+++++.|||+|.+|.-+|..|.+.|. +|++..|++.-
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~----~Vtvi~~~~~~ 60 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGS----EVTVVEFASEI 60 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTC----EEEEECSSSSS
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCC----eEEEEEEcccc
Confidence 45789999999999999999999995 99999987654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=91.17 E-value=0.11 Score=39.24 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
.++|.|||.|.+|.-+|..|.+.|. +|++..+.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~----~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGK----KVTVIDILD 63 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC----EEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHhhccce----EEEEEEecC
Confidence 3689999999999999999999995 999998864
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.04 E-value=0.14 Score=39.27 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
.++|.|||+|.+|.-+|..|.+.|. +|+++.+.+.
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~----~Vtvie~~~~ 69 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANM----HVTLLDTAAR 69 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhhCc----ceeeeeeccc
Confidence 4789999999999999999999985 9999998754
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=91.01 E-value=0.39 Score=40.49 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=51.2
Q ss_pred CCCeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCcCCCccccChHHHhhcCCEEEEee---ChHH
Q psy316 63 MWTKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQY 136 (341)
Q Consensus 63 m~~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~ 136 (341)
++-|+++| | .+.||.++++.|++.|. +|.+++|+++. .+...++. ..+++++.+ .+..
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga----~V~~~~~~~~~~~~~~~~~~------------g~~~~~~~~Dvs~~~~ 66 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGA----DIAIADLVPAPEAEAAIRNL------------GRRVLTVKCDVSQPGD 66 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSCCHHHHHHHHHT------------TCCEEEEECCTTCHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCchHHHHHHHHHc------------CCcEEEEEeeCCCHHH
Confidence 34467766 4 47899999999999995 99999987542 22111111 123444443 4677
Q ss_pred HHHHHHHhhhcccccCCCcEEEEecC
Q psy316 137 LDSAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 137 v~~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+++++ ...+ .+=.++|+.++
T Consensus 67 v~~~~~~~-~~~~--G~iDilVnnAG 89 (247)
T d2ew8a1 67 VEAFGKQV-ISTF--GRCDILVNNAG 89 (247)
T ss_dssp HHHHHHHH-HHHH--SCCCEEEECCC
T ss_pred HHHHHHHH-HHHc--CCCCEEEECCC
Confidence 88888777 5444 33347887643
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.93 E-value=0.13 Score=41.55 Aligned_cols=86 Identities=8% Similarity=0.070 Sum_probs=54.5
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCc----CCCc------cccChHHHhhcCCEEEEe
Q psy316 64 WTKVGFIGAGNM-AQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPE----PMDF------ALNDNHRIIKEAEYVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~m-G~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~----~~g~------~~~s~~e~~~~aDvIila 131 (341)
.+++.|||-+++ |..|+.-|.+.|. .|+.++.+-.. ..+-.. ..+. ..+...+....+|++|.+
T Consensus 29 GK~vvVIGrS~iVG~Pla~lL~~~ga----TVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa 104 (171)
T d1edza1 29 GKKCIVINRSEIVGRPLAALLANDGA----TVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 104 (171)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSC----EEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCEEEEECCccccHHHHHHHHHHCCC----EEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence 488999998765 9999999998884 89888764211 111000 0011 011245567789999999
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEe
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISM 160 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~ 160 (341)
++...+. +....+ ++|.++|+.
T Consensus 105 vG~p~~~-----i~~d~i--k~GavvIDv 126 (171)
T d1edza1 105 VPSENYK-----FPTEYI--KEGAVCINF 126 (171)
T ss_dssp CCCTTCC-----BCTTTS--CTTEEEEEC
T ss_pred cCCCccc-----cChhhc--ccCceEeec
Confidence 9754310 103356 789999986
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=90.93 E-value=0.19 Score=44.28 Aligned_cols=65 Identities=22% Similarity=0.174 Sum_probs=45.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC-----C--------C-c-cccChHHHhhcCCE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP-----M--------D-F-ALNDNHRIIKEAEY 127 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~-----~--------g-~-~~~s~~e~~~~aDv 127 (341)
.++|.|.|+ |-+|+.+++.|+++|+ +|.+..|+.++.+.+... . + + ...+..+++..+|.
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~----~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGY----KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcC----EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence 468999966 9999999999999994 999888987665543210 0 0 1 11233456788998
Q ss_pred EEEee
Q psy316 128 VFLAM 132 (341)
Q Consensus 128 IilaV 132 (341)
|+-+.
T Consensus 87 v~~~a 91 (342)
T d1y1pa1 87 VAHIA 91 (342)
T ss_dssp EEECC
T ss_pred hhhhc
Confidence 88554
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.77 E-value=0.077 Score=44.94 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=39.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhh--cCCEEEEee
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIK--EAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~--~aDvIilaV 132 (341)
|||.|.|+ |-+|+.+++.|.+.| ++|+..+|++-. +.+ ..+..++++ +.|+||-+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g----~~Vi~~~r~~~D---~~d-----~~~~~~~l~~~~~d~vih~a 60 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN----VEVIPTDVQDLD---ITN-----VLAVNKFFNEKKPNVVINCA 60 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS----EEEEEECTTTCC---TTC-----HHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC----CEEEEeechhcc---CCC-----HHHHHHHHHHcCCCEEEeec
Confidence 68999987 999999999999988 499999886311 111 112234443 568888665
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.71 E-value=0.17 Score=43.12 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=26.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAP 99 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r 99 (341)
.++|.|=|.|++|+..++.|.+.|. +|+ +.|.
T Consensus 31 g~~v~IqGfGnVG~~~a~~L~~~Ga----kvv~vsD~ 63 (242)
T d1v9la1 31 GKTVAIQGMGNVGRWTAYWLEKMGA----KVIAVSDI 63 (242)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTC----EEEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC----eEEEeecc
Confidence 5789999999999999999999994 654 5554
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.48 E-value=0.065 Score=44.29 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=31.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCC---CCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGL---CIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~---~~~~~V~v~~r~~ 101 (341)
+||+|||+|.-|-+-|..|.++|+ ...++|+++++++
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~ 42 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 42 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence 589999999999999999999884 2235899999865
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.31 E-value=0.13 Score=43.68 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=34.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP 110 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~ 110 (341)
+++-|.|+ +-+|.++++.|++.|. +|++++|++++++.+.++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga----~V~~~~r~~~~l~~~~~~ 48 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGA----KVVAVTRTNSDLVSLAKE 48 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC----EEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHh
Confidence 44555565 6799999999999995 999999999888777654
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.21 E-value=0.091 Score=42.99 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=28.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
++||.|+|+ |-+|+.+++.|++.|+ ..+|++..|++
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~--~~~v~~~~r~~ 38 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPT--LAKVIAPARKA 38 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTT--CCEEECCBSSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEEEeCCc
Confidence 379999988 9999999999999984 12566666653
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.11 E-value=0.19 Score=37.34 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=30.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
.++|.|||.|.+|.-+|..|.+.|. +|+++.|.+.
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~----~vt~i~~~~~ 56 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGR----RTVMLVRTEP 56 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhcch----hheEeeccch
Confidence 3689999999999999999999884 9999998753
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.01 E-value=0.14 Score=45.05 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC
Q psy316 63 MWTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP 99 (341)
Q Consensus 63 m~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r 99 (341)
|.+||.|.|+ |-+|+.|++.|++.|+ +|++.|+
T Consensus 1 M~kKILITG~tGfIGs~lv~~Ll~~g~----~V~~ld~ 34 (346)
T d1ek6a_ 1 MAEKVLVTGGAGYIGSHTVLELLEAGY----LPVVIDN 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC----CEEEEEC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCcC----EEEEEEC
Confidence 7889999865 9999999999999994 8888764
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=89.77 E-value=0.17 Score=42.87 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=33.3
Q ss_pred CCeEEEEcc-cH--HHHHHHHHHHhcCCCCCCeEEEEcCChhhh-hhcCcCC
Q psy316 64 WTKVGFIGA-GN--MAQAVATSLIRTGLCIPAQIIASAPSERFK-LHWPEPM 111 (341)
Q Consensus 64 ~~kIgiIG~-G~--mG~aia~~L~~~G~~~~~~V~v~~r~~e~~-~~l~~~~ 111 (341)
.+++-|.|+ |. ||.++|+.|.+.|. +|++.+|+.++. +++.+++
T Consensus 6 gK~~lItGaag~~GIG~aiA~~la~~Ga----~Vil~~~~~~~~~~~~~~~~ 53 (268)
T d2h7ma1 6 GKRILVSGIITDSSIAFHIARVAQEQGA----QLVLTGFDRLRLIQRITDRL 53 (268)
T ss_dssp TCEEEECCCSSTTCHHHHHHHHHHHTTC----EEEEEECSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcCC----EEEEEeCChHHHHHHHHHHc
Confidence 456666685 65 99999999999995 899999987765 4454443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.35 E-value=0.79 Score=38.65 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=49.8
Q ss_pred eEEEE--cccHHHHHHHHHHHhcCCCCCCeEEE-EcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHH
Q psy316 66 KVGFI--GAGNMAQAVATSLIRTGLCIPAQIIA-SAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDS 139 (341)
Q Consensus 66 kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v-~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~ 139 (341)
|+.+| |.+-+|.++++.|++.|. +|++ +.|+++.++.+.+++ .+ ...+++++.+ .++.+++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~----~Vvi~~~~~~~~~~~~~~~~-------~~--~g~~~~~~~~D~~~~~~v~~ 73 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGA----SVVVNYGSSSKAAEEVVAEL-------KK--LGAQGVAIQADISKPSEVVA 73 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHHH-------HH--TTCCEEEEECCTTSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEcCCChHHHHHHHHHH-------HH--cCCCceEecCCCCCHHHHHH
Confidence 55555 557899999999999995 8887 567766666554421 00 1234555444 3566777
Q ss_pred HHHHhhhcccccCCCcEEEEecC
Q psy316 140 AIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 140 vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
+++++ ...+ ..=.++|+.++
T Consensus 74 ~~~~~-~~~~--g~idilinnag 93 (259)
T d1ja9a_ 74 LFDKA-VSHF--GGLDFVMSNSG 93 (259)
T ss_dssp HHHHH-HHHH--SCEEEEECCCC
T ss_pred HHHHH-HHHc--CCCcEEEeccc
Confidence 77766 4433 22236676644
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=89.20 E-value=0.2 Score=37.95 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=31.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
+.++.|||.|.+|.=+|..|.+.|. +|++..+.++
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~----~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGS----RLDVVEMMDG 60 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTC----EEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCC----EEEEEEeecc
Confidence 4789999999999999999999995 9999988653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.17 E-value=0.13 Score=44.77 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=29.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..|.|||+|--|.+.|..|.+.|+ +|.|++++.
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~----~V~iiEk~~ 34 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNK----KVLVIEKRN 34 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTC----CEEEECSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCC----cEEEEECCC
Confidence 469999999999999999999985 999998764
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=89.12 E-value=0.7 Score=39.05 Aligned_cols=91 Identities=8% Similarity=-0.007 Sum_probs=49.9
Q ss_pred eEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEE-cCChhhhhhcCcCC----Cc----cccChHH-HhhcCCEEEEe--
Q psy316 66 KVGFI--GAGNMAQAVATSLIRTGLCIPAQIIAS-APSERFKLHWPEPM----DF----ALNDNHR-IIKEAEYVFLA-- 131 (341)
Q Consensus 66 kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~-~r~~e~~~~l~~~~----g~----~~~s~~e-~~~~aDvIila-- 131 (341)
-|++| |.+.||.++++.|++.|. +|++. .|+++.++.+.+++ +. ...+... .....++....
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga----~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d 78 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGY----AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 78 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeeccccccccccccccccc
Confidence 38888 457899999999999995 88775 55666666554321 11 1111100 00112222222
Q ss_pred -eChHHHHHHHHHhhhcccccCCCcEEEEecCC
Q psy316 132 -MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVG 163 (341)
Q Consensus 132 -V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~ag 163 (341)
...+.++++++++ ...+ .+=.++|..++.
T Consensus 79 v~~~~~v~~~~~~~-~~~~--G~iDiLVnnAG~ 108 (284)
T d1e7wa_ 79 VTLFTRCAELVAAC-YTHW--GRCDVLVNNASS 108 (284)
T ss_dssp BCHHHHHHHHHHHH-HHHH--SCCCEEEECCCC
T ss_pred CCCHHHHHHHHHHH-HHHh--CCCCEEEecCCc
Confidence 2356677777776 5444 333477876443
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.90 E-value=0.61 Score=39.04 Aligned_cols=69 Identities=7% Similarity=0.153 Sum_probs=46.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEee---ChHHHHHH
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAM---KPQYLDSA 140 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV---~~~~v~~v 140 (341)
++|-|.|+ +-+|.++++.|++.+ -..++|++..|++++++.+.+. .-....+.++.+ .+..++++
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a-~~g~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~~Dvs~~~~v~~~ 71 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLP-QPPQHLFTTCRNREQAKELEDL----------AKNHSNIHILEIDLRNFDAYDKL 71 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSS-SCCSEEEEEESCTTSCHHHHHH----------HHHCTTEEEEECCTTCGGGHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHH----------HhcCCcEEEEEEEeccHHHHHHH
Confidence 46878877 789999999997521 1125999999998876654321 112346666665 35677777
Q ss_pred HHHh
Q psy316 141 IQGL 144 (341)
Q Consensus 141 l~~i 144 (341)
++++
T Consensus 72 ~~~i 75 (248)
T d1snya_ 72 VADI 75 (248)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7765
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=88.80 E-value=0.2 Score=41.62 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
|..-|.|||+|.-|...|..|.++|+ +|.++++++.
T Consensus 1 M~yDViIIGaG~aGl~aA~~la~~G~----~V~liEk~~~ 36 (251)
T d2i0za1 1 MHYDVIVIGGGPSGLMAAIGAAEEGA----NVLLLDKGNK 36 (251)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC----cEEEEeCCCC
Confidence 45569999999999999999999995 9999998753
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=88.54 E-value=0.75 Score=38.42 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=28.8
Q ss_pred CCeEEEEccc---HHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh
Q psy316 64 WTKVGFIGAG---NMAQAVATSLIRTGLCIPAQIIASAPSERFKL 105 (341)
Q Consensus 64 ~~kIgiIG~G---~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~ 105 (341)
.+++-|.|++ -+|.++|+.|++.|. +|++.+|+++..+
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~----~V~i~~~~~~~~~ 45 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGA----ELAFTYQNDKLKG 45 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTC----EEEEEESSTTTHH
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCC----EEEEEeCCHHHHH
Confidence 3555566764 488999999999995 8999999855433
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.42 E-value=0.33 Score=40.23 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
..++|.|||+|.-|...|..|.+.|+ +|++++++.
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~----~v~l~E~~~ 82 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGY----TVHLTDTAE 82 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTC----EEEEECSSS
T ss_pred CCceEEEEcccHHHHHHHHHHHHhcc----ceeeEeecc
Confidence 45789999999999999999999995 999999865
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.41 E-value=0.45 Score=45.01 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=30.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
..+|.|||+|.+|+-++++|...|. ..++++|.+
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~GV---g~itivD~d 58 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLPGI---GSFTIIDGN 58 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTTTC---SEEEEECCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHhcC---CEEEEEcCC
Confidence 4689999999999999999999996 689998763
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.31 E-value=0.26 Score=41.36 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
...||.|||+|.=|.+-|..|.++|+ +|+|+..+
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~----~V~VlEa~ 37 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGM----DVTLLEAR 37 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTC----EEEEECSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC----CEEEEeCC
Confidence 45689999999999999999999995 99999875
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=88.09 E-value=0.23 Score=43.60 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP 99 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r 99 (341)
|||.|+|+ |-+|+.+++.|++.|+ +|++.+|
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~----~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH----DVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC----EEEEEEC
Confidence 68999966 9999999999999984 9998875
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.92 E-value=0.88 Score=37.92 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=29.7
Q ss_pred EEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh-hhhcCc
Q psy316 67 VGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERF-KLHWPE 109 (341)
Q Consensus 67 IgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~-~~~l~~ 109 (341)
+++| |.+.+|.++++.|+++|. +|++.+|+.++ .+++.+
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~----~Vvi~~r~~~~~~~~~~~ 44 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGF----RVVVHYRHSEGAAQRLVA 44 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC----EEEEEESSCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCchHHHHHHHH
Confidence 5666 457799999999999995 99999988654 344433
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=87.83 E-value=0.23 Score=42.04 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=27.9
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
|.|||+|-.|.+.|..|.+.|+ +|+++++.
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~----~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGV----KTLLVDAF 35 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC----CEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC----cEEEEeCC
Confidence 8999999999999999999995 89999875
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.66 E-value=0.25 Score=39.56 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=28.7
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
+.|||+|.-|...|..|.++|+ +|.|+++++
T Consensus 8 viViGaG~~Gl~~A~~La~~G~----~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGK----KVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTC----CEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCC----CEEEEcCCC
Confidence 7999999999999999999995 999999874
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.60 E-value=0.8 Score=38.63 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=25.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-cCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIR-TGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~-~G~~~~~~V~v~~r~ 100 (341)
.++|+|-|.|++|..+++.|.+ .|. .-|.+.|.+
T Consensus 32 g~~v~IqGfGnVG~~~a~~L~~~~G~---kvv~vsD~~ 66 (239)
T d1gtma1 32 GKTIAIQGYGNAGYYLAKIMSEDFGM---KVVAVSDSK 66 (239)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCC---EEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCc---ceeeccccc
Confidence 4789999999999999999875 463 234455543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.56 E-value=0.48 Score=37.41 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=34.9
Q ss_pred CeEEEE-cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc
Q psy316 65 TKVGFI-GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF 113 (341)
Q Consensus 65 ~kIgiI-G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~ 113 (341)
.+|.|+ |.|.+|...++-....|. +|++.++++++.+.+++ +|.
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga----~Vi~~~~s~~k~~~~~~-lGa 74 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGA----KLIGTVGTAQKAQSALK-AGA 74 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTC----EEEEEESSHHHHHHHHH-HTC
T ss_pred CEEEEEccccccchHHHHHHHHhCC----eEeecccchHHHHHHHh-cCC
Confidence 579998 556699888887777774 89999999999887765 564
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=87.49 E-value=0.12 Score=41.31 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhcCC
Q psy316 62 PMWTKVGFIGAGNMAQAVATSLIRTGL 88 (341)
Q Consensus 62 ~m~~kIgiIG~G~mG~aia~~L~~~G~ 88 (341)
.|+.+|.|||.|..|.-+|..|.+.|.
T Consensus 1 ~m~a~VvIIGgG~~G~e~A~~l~~~g~ 27 (183)
T d1d7ya1 1 ALKAPVVVLGAGLASVSFVAELRQAGY 27 (183)
T ss_dssp CCCSSEEEECCSHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEECccHHHHHHHHHHHhcCC
Confidence 388899999999999999999999884
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=87.42 E-value=0.24 Score=43.23 Aligned_cols=35 Identities=17% Similarity=0.075 Sum_probs=30.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
...|.|||+|.-|-++|..|.+.|+ ++.+++++++
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~----~v~i~Ek~~~ 41 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGR----SVHVIETAGD 41 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC----CEEEECSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHhCCC----CEEEEEcCCC
Confidence 3469999999999999999999996 8999998754
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.27 E-value=0.74 Score=36.47 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhcC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTG 87 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G 87 (341)
.+|+++|+|++|+.+++.|.+..
T Consensus 5 i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 5 VNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCC
T ss_pred EEEEEEeCCHHHHHHHHHHHHhH
Confidence 57999999999999999998754
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.14 E-value=1.2 Score=38.79 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=65.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCC---CC----CCeEEEEcCC----hhhhhhcCc---CC---Cc--cccChHHHhh--
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGL---CI----PAQIIASAPS----ERFKLHWPE---PM---DF--ALNDNHRIIK-- 123 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~---~~----~~~V~v~~r~----~e~~~~l~~---~~---g~--~~~s~~e~~~-- 123 (341)
.||.|.|+|.-|..+++.|...+. +. ..+|+++|+. ..+...+.. .+ .. ...++.++++
T Consensus 26 ~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~ 105 (294)
T d1pj3a1 26 HKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNIL 105 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHH
T ss_pred cEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhc
Confidence 589999999999999988765431 11 1368888873 222111211 00 11 2246777776
Q ss_pred cCCEEEEee-ChH-HHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhcc
Q psy316 124 EAEYVFLAM-KPQ-YLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKLS 174 (341)
Q Consensus 124 ~aDvIilaV-~~~-~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l~ 174 (341)
++|++|-+. ++. .-+++++.+ ... +++.+|..+++..+ .++..++..
T Consensus 106 kptvliG~S~~~g~ft~evi~~M-a~~---~~~PIIFaLSNPt~~~e~~~~~a~~~t~ 159 (294)
T d1pj3a1 106 KPSTIIGVAGAGRLFTPDVIRAM-ASI---NERPVIFALSNPTAQAECTAEEAYTLTE 159 (294)
T ss_dssp CCSEEEECCCSSCCSCHHHHHHH-HHH---CSSCEEEECCSSGGGCSCCHHHHHHHTT
T ss_pred CCceEEEecCCCCcCCHHHHHHH-Hhc---CCCcEEEEccCCCCcCCcCHHHHHhhcc
Confidence 788777665 333 246777776 543 57789999988764 345555554
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=87.05 E-value=0.76 Score=40.09 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=62.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhc----CCCC---CCeEEEEcCCh----hh--hhhcCcCCCc---cccChHHHhh--cCC
Q psy316 65 TKVGFIGAGNMAQAVATSLIRT----GLCI---PAQIIASAPSE----RF--KLHWPEPMDF---ALNDNHRIIK--EAE 126 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~----G~~~---~~~V~v~~r~~----e~--~~~l~~~~g~---~~~s~~e~~~--~aD 126 (341)
.||.|.|+|.-|.++++.|... |... ..+|+++||.- .+ +...++.+-. ...+..++++ +++
T Consensus 26 ~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~~~~~~~~l~~~i~~vkpt 105 (298)
T d1gq2a1 26 HTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPT 105 (298)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHHHCCS
T ss_pred cEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHHHhhhhhhhHHHhhccChh
Confidence 5899999999999999888643 3210 13788888732 11 1111111111 2234556655 356
Q ss_pred EEEEee-ChH-HHHHHHHHhhhcccccCCCcEEEEecCCCC-----HHHHHHhcc
Q psy316 127 YVFLAM-KPQ-YLDSAIQGLVNDKVTLNSSRCIISMLVGVD-----LETLKKKLS 174 (341)
Q Consensus 127 vIilaV-~~~-~v~~vl~~i~~~~l~~~~~~iIVs~~agi~-----~~~l~~~l~ 174 (341)
++|-+. .+. .-+++++.+ ... .+..+|..+++..+ .++.-+|..
T Consensus 106 vliG~s~~~g~ft~evv~~m-a~~---~~~PIIFaLSNPt~~~E~~~~~a~~wt~ 156 (298)
T d1gq2a1 106 VLIGVAAIGGAFTQQILQDM-AAF---NKRPIIFALSNPTSKAECTAEQLYKYTE 156 (298)
T ss_dssp EEEECSCCTTCSCHHHHHHH-HHH---CSSCEEEECCSSGGGCSSCHHHHHHHTT
T ss_pred eeEecccccCcCCHHHHHHH-Hhh---CCCCEEEEccCCCCcCCCCHHHHhhhcc
Confidence 666554 343 346677776 543 56779998988765 345555654
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.02 E-value=1.3 Score=38.47 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=50.1
Q ss_pred CeEEEE-c-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccCh-HHHhhcCCEEEE-eeChHHHHHH
Q psy316 65 TKVGFI-G-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDN-HRIIKEAEYVFL-AMKPQYLDSA 140 (341)
Q Consensus 65 ~kIgiI-G-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~-~e~~~~aDvIil-aV~~~~v~~v 140 (341)
=|+.+| | .+.||.++++.|++.|. +|++.+|+.+.....+.+ . ..... .+.-.....+.. ......++++
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga----~Vvi~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 80 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGA----LVVVNDLGGDFKGVGKGS-S-AADKVVEEIRRRGGKAVANYDSVEAGEKL 80 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC----EEEEECCCBCTTSCBCCS-H-HHHHHHHHHHHTTCEEEEECCCGGGHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC----EEEEEeCCchhhhhhhhH-H-HHHHHHHHHhhcccccccccchHHHHHHH
Confidence 467777 4 47899999999999995 999999876543322221 0 00011 111122222222 2345666777
Q ss_pred HHHhhhcccccCCCcEEEEecC
Q psy316 141 IQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 141 l~~i~~~~l~~~~~~iIVs~~a 162 (341)
++.+ ...+ .+=.++|+.++
T Consensus 81 v~~~-~~~~--G~iDiLVnNAG 99 (302)
T d1gz6a_ 81 VKTA-LDTF--GRIDVVVNNAG 99 (302)
T ss_dssp HHHH-HHHT--SCCCEEEECCC
T ss_pred HHHH-HHHc--CCCCEEEECCc
Confidence 7665 4433 33347887643
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.78 E-value=1.3 Score=33.24 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=52.4
Q ss_pred CCeEEEEcccH-----------HHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCC-EEEEe
Q psy316 64 WTKVGFIGAGN-----------MAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAE-YVFLA 131 (341)
Q Consensus 64 ~~kIgiIG~G~-----------mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aD-vIila 131 (341)
.+||.|||+|. .+...++.|.+.|+ ++++.|.||+.... +. ..+| +.|.+
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~----~~IliN~NPeTVst----------d~----d~aD~lYfep 65 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY----ETIMVNCNPETVST----------DY----DTSDRLYFEP 65 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC----EEEEECCCTTSSTT----------ST----TSSSEEECCC
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC----eEEEEecChhhhhc----------Ch----hhcCceEEcc
Confidence 46899999984 46677888999994 99999999876431 11 1345 44557
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCC
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVD 165 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~ 165 (341)
+....+.++++.- +++.+++++ +|-+
T Consensus 66 lt~e~v~~Ii~~E-------~p~~ii~~~-GGQt 91 (121)
T d1a9xa4 66 VTLEDVLEIVRIE-------KPKGVIVQY-GGQT 91 (121)
T ss_dssp CSHHHHHHHHHHH-------CCSEEECSS-STHH
T ss_pred CCHHHHHHHHHHh-------CCCEEEeeh-hhhh
Confidence 7777777777654 456666655 5544
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=86.67 E-value=0.4 Score=40.49 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=47.1
Q ss_pred EEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHHhhcCCEEEEeeChHHHHHHHHHhhhc
Q psy316 69 FIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRIIKEAEYVFLAMKPQYLDSAIQGLVND 147 (341)
Q Consensus 69 iIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~~~~aDvIilaV~~~~v~~vl~~i~~~ 147 (341)
|-|+ +.+|.++|+.|.+.|. +|.+.+|+.++++.+.+. + .....+|+ +.+++++++++++ ..
T Consensus 5 VTGas~GiG~aiA~~la~~Ga----~V~i~~r~~~~~~~~~~~-~-------~~~~~~dv----~~~~~~~~~~~~~-~~ 67 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGH----TVACHDESFKQKDELEAF-A-------ETYPQLKP----MSEQEPAELIEAV-TS 67 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTC----EEEECCGGGGSHHHHHHH-H-------HHCTTSEE----CCCCSHHHHHHHH-HH
T ss_pred EECCCCHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHhh-h-------CcEEEecc----CCHHHHHHHHHHH-HH
Confidence 3455 5699999999999995 999999988877765431 1 11123443 2345566666665 44
Q ss_pred ccccCCCcEEEEecC
Q psy316 148 KVTLNSSRCIISMLV 162 (341)
Q Consensus 148 ~l~~~~~~iIVs~~a 162 (341)
.+ .+=.++|+.++
T Consensus 68 ~~--G~iDiLVnNAg 80 (252)
T d1zmta1 68 AY--GQVDVLVSNDI 80 (252)
T ss_dssp HH--SCCCEEEEECC
T ss_pred Hc--CCCCEEEECCc
Confidence 33 22247776643
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=86.55 E-value=0.21 Score=41.34 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=29.4
Q ss_pred eEEEE--cccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhh
Q psy316 66 KVGFI--GAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKL 105 (341)
Q Consensus 66 kIgiI--G~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~ 105 (341)
|+++| |.+-||.++++.|++.|. +|++.+|+++..+
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga----~V~i~~~~~~~~~ 39 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGY----RVVVLDLRREGED 39 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC----EEEEEESSCCSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC----EEEEEECCccccc
Confidence 45666 458999999999999995 9999999876544
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.49 E-value=0.44 Score=35.06 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=47.9
Q ss_pred CeEEEEcc----------cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc-cccChHHHhhcCCEEEEeeC
Q psy316 65 TKVGFIGA----------GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF-ALNDNHRIIKEAEYVFLAMK 133 (341)
Q Consensus 65 ~kIgiIG~----------G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~-~~~s~~e~~~~aDvIilaV~ 133 (341)
++|||.|+ ..-.--+...|.+.|. +|.+||+.-...+ ...+. ...+..+.+..+|+||+...
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~----~v~iyDP~v~~~~---~~~~~~~~~~l~~~~~~sDiII~~~~ 88 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDI----KIIIYEPMLNKLE---SEDQSVLVNDLENFKKQANIIVTNRY 88 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSC----EEEEECTTCSCCC---TTCCSEECCCHHHHHHHCSEEECSSC
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhcccc----ceeeecCCcChhH---hccCCEEEeCHHHHHhhCCEEEEcCC
Confidence 37999987 4456678899989885 9999998643221 11345 66788888999998887766
Q ss_pred hHHHH
Q psy316 134 PQYLD 138 (341)
Q Consensus 134 ~~~v~ 138 (341)
...+.
T Consensus 89 ~~~~~ 93 (108)
T d1dlja3 89 DNELQ 93 (108)
T ss_dssp CGGGG
T ss_pred chHHH
Confidence 65543
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.49 E-value=0.51 Score=41.15 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=57.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEE-EEcC----------ChhhhhhcCcCCCc------cccChHHHhh-cC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQII-ASAP----------SERFKLHWPEPMDF------ALNDNHRIIK-EA 125 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~-v~~r----------~~e~~~~l~~~~g~------~~~s~~e~~~-~a 125 (341)
.++|.|=|.|++|...|+.|.+.|. +|+ +.|. +.+.+..+..+.+. ...++.+++. +|
T Consensus 36 gktvaIqGfGnVG~~~A~~L~e~Ga----kvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (293)
T d1hwxa1 36 DKTFAVQGFGNVGLHSMRYLHRFGA----KCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDC 111 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC----EEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC----EEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCc
Confidence 4789999999999999999999994 554 4442 33444443332221 1112234444 89
Q ss_pred CEEEEeeChHHHHHHHHHhhhcccccCCCcEEEEecCC-CCHHHHHHhcc
Q psy316 126 EYVFLAMKPQYLDSAIQGLVNDKVTLNSSRCIISMLVG-VDLETLKKKLS 174 (341)
Q Consensus 126 DvIilaV~~~~v~~vl~~i~~~~l~~~~~~iIVs~~ag-i~~~~l~~~l~ 174 (341)
||+|-|-....+.. +. .+.+ .-++|+--+++ ++.+.. +.|.
T Consensus 112 DIliPaA~~~~I~~---~~-a~~l---~ak~I~EgAN~P~t~eA~-~~L~ 153 (293)
T d1hwxa1 112 DILIPAASEKQLTK---SN-APRV---KAKIIAEGANGPTTPQAD-KIFL 153 (293)
T ss_dssp SEEEECSSSSCBCT---TT-GGGC---CCSEEECCSSSCBCHHHH-HHHH
T ss_pred cEEeeccccccccH---HH-HHHH---hhCEEeccCCCCCCcchH-HHHH
Confidence 99999865543321 12 3334 34577766655 344443 4443
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=86.41 E-value=0.24 Score=43.34 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=31.4
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
.+||.|.| +|-+|+.+++.|++.|+ +|++++|++.+
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~----~V~~~~r~~~~ 44 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGA----TVKGYSLTAPT 44 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEESSCSS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC----EEEEEECCCCc
Confidence 47999997 59999999999999994 99999997654
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.36 E-value=0.34 Score=39.58 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCC-CCeEE-EEcC--ChhhhhhcC
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCI-PAQII-ASAP--SERFKLHWP 108 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~-~~~V~-v~~r--~~e~~~~l~ 108 (341)
|.+||||=|.|++|..+.+.++..+... .-+|. +-+. +.+.+..|-
T Consensus 1 M~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLl 50 (190)
T d1k3ta1 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQM 50 (190)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHh
Confidence 7889999999999999999988765321 22443 3343 455554443
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=86.26 E-value=0.15 Score=43.25 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=24.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
|||.|.|+ |-+|+.+++.|.+.| ++++.+++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g-----~~v~~~~~ 32 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG-----NLIALDVH 32 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS-----EEEEECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-----CEEEEECC
Confidence 78999986 999999999998887 44444443
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.25 E-value=0.97 Score=36.99 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=33.8
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcC
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWP 108 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~ 108 (341)
+|-|||.|..|..++.+|.+.+. ..-+++.+|-+.+.+....
T Consensus 3 ~IkViGvGGaG~n~vn~~~~~~~-~~v~~iainTD~~~L~~~~ 44 (198)
T d1rq2a1 3 VIKVVGIGGGGVNAVNRMIEQGL-KGVEFIAINTDAQALLMSD 44 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTC-CSEEEEEEESCHHHHHHCC
T ss_pred eEEEEEeCchHHHHHHHHHHcCC-CCceEEEEcchHHHHhcCC
Confidence 68899999999999999999984 4457778887777766543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=85.47 E-value=0.43 Score=42.15 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=25.9
Q ss_pred eEE-EEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 66 KVG-FIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 66 kIg-iIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
|+. |.| +|-+|+.+++.|++.|+ +|++.+|..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~----~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY----EVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC----EEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC----EEEEEECCC
Confidence 455 556 69999999999999994 999999843
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.90 E-value=0.38 Score=37.26 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=26.1
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
||.|||.|..|.-+|..|.+ + .+|++++|.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~----~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-T----YEVTVIDKEP 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-T----SEEEEECSSS
T ss_pred eEEEECCcHHHHHHHHHHHc-C----CCEEEEeccc
Confidence 79999999999999998864 4 3899998753
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.65 E-value=0.7 Score=37.23 Aligned_cols=65 Identities=17% Similarity=0.327 Sum_probs=46.0
Q ss_pred CCeEEEEcc--cHHHHHHHHHHHhcCCCCCCeEEEEcCC-----hhhhhhcC---cCCC--c-cccChHHHhhcCCEEEE
Q psy316 64 WTKVGFIGA--GNMAQAVATSLIRTGLCIPAQIIASAPS-----ERFKLHWP---EPMD--F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~--G~mG~aia~~L~~~G~~~~~~V~v~~r~-----~e~~~~l~---~~~g--~-~~~s~~e~~~~aDvIil 130 (341)
..||+|||= -++..+++..+..-|. +++++.+. ++-.+.+. .+.| + .+.+..++++++|+|..
T Consensus 5 ~lkia~vGD~~nnV~~Sli~~~~~~G~----~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt 80 (185)
T d1dxha2 5 DISYAYLGDARNNMGNSLLLIGAKLGM----DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHT 80 (185)
T ss_dssp GCEEEEESCCSSHHHHHHHHHHHHTTC----EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEE
T ss_pred CCEEEEEcCCcchHHHHHHHHHHHcCC----EEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEe
Confidence 468999994 4899999999999885 89988762 12122111 1123 3 67788999999999876
Q ss_pred ee
Q psy316 131 AM 132 (341)
Q Consensus 131 aV 132 (341)
-+
T Consensus 81 ~~ 82 (185)
T d1dxha2 81 DV 82 (185)
T ss_dssp CC
T ss_pred eh
Confidence 54
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.54 E-value=0.39 Score=38.61 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=48.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--c----ccChHHHhh-----cCCEEEEee
Q psy316 65 TKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--A----LNDNHRIIK-----EAEYVFLAM 132 (341)
Q Consensus 65 ~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~----~~s~~e~~~-----~aDvIilaV 132 (341)
.+|.|.| +|.+|+..++-....|. ..|+...+++++...+.+++|. + ..+..+.++ ..|+||=++
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga---~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~v 108 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGC---SRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNV 108 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTC---SEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESS
T ss_pred CEEEEECCCchhhHHHHHHHHHcCC---cceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecC
Confidence 3577777 59999988887766774 4566667777776666654564 1 123333333 378888888
Q ss_pred ChHHHHHHHHHh
Q psy316 133 KPQYLDSAIQGL 144 (341)
Q Consensus 133 ~~~~v~~vl~~i 144 (341)
-...+...++.+
T Consensus 109 Gg~~~~~~~~~l 120 (187)
T d1vj1a2 109 GGDISNTVISQM 120 (187)
T ss_dssp CHHHHHHHHTTE
T ss_pred CchhHHHHhhhc
Confidence 655555555444
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=84.14 E-value=0.85 Score=34.51 Aligned_cols=64 Identities=27% Similarity=0.288 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHH
Q psy316 250 AYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALE 325 (341)
Q Consensus 250 a~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~ 325 (341)
.+++..+.++.|+ +.+.|+++++.++++..+..++..+-.. ...+.+.-.+|+++...+.+++.
T Consensus 14 ~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~------------~~~~~~~~~~~~f~~~l~~KDl~ 80 (133)
T d1vpda1 14 VIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAK------------APMVMDRNFKPGFRIDLHIKDLA 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHH------------HHHHHTTCCCCSSBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhc------------cchhhhccCCCCchHHHHHHHHH
Confidence 3444445555554 5699999999999999887666444322 33455556678777776666653
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.12 E-value=1.3 Score=36.15 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=33.1
Q ss_pred eEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhc
Q psy316 66 KVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHW 107 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l 107 (341)
+|-|||.|.-|+.++..|.+.+. ..-+++..|-+.+.+...
T Consensus 3 ~IkViGvGGaG~n~v~~~~~~~~-~~v~~iainTD~~~L~~~ 43 (198)
T d1ofua1 3 VIKVIGVGGGGGNAVNHMAKNNV-EGVEFICANTDAQALKNI 43 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTC-CSEEEEEEESBTGGGSSC
T ss_pred eEEEEEECchHHHHHHHHHHcCC-CCeEEEEEeCcHHHHhcC
Confidence 58899999999999999999984 445777788777766643
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.09 E-value=0.64 Score=34.30 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=28.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
+.++.|||.|.+|.-+|..|.+.|. +..+|+++.|.+
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~-~~~~Vtli~~~~ 56 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKP-KDGQVTLCYRGE 56 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCC-TTCEEEEEESSS
T ss_pred CCeEEEECCcHHHHHHHHHhhhccc-CCcEEEEEeccc
Confidence 4789999999999999977765542 234899988764
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=84.08 E-value=0.42 Score=39.93 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
..|.|||+|.-|...|..|.++|+ +|.++++++.
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~----~V~vlEk~~~ 38 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGK----SVTVFDNGKK 38 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC----CEEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCC----cEEEEecCCC
Confidence 359999999999999999999995 8999999864
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=83.93 E-value=0.44 Score=36.19 Aligned_cols=65 Identities=20% Similarity=0.120 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCChHHHHHhcCCCchHHHHHHHHHH
Q psy316 250 AYLFLVMDAMADG---AVKQGIPRDMALRIGAQLLKGSGQLVHKDLLRMDHAAQAHPAVIKDQICSPGGSTIAGIHALE 325 (341)
Q Consensus 250 a~~~~~~eal~ea---~~~~Gl~~~~a~~lv~~~~~gs~~l~~~~~~~~~~~~~~~p~~l~~~v~tpgG~t~~~l~~l~ 325 (341)
.+++..+.++.|+ +.+.|+++++.++++..+..++..+. . .-|..+.+.-..|+++.....+++.
T Consensus 13 ~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~-~----------~~p~~~~~~~~~~~f~~~~~~KDl~ 80 (132)
T d2cvza1 13 ALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATE-N----------LIPQRVLTRAFPKTFALGLLVKDLG 80 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHH-H----------THHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhh-h----------hhhHHHHHHhhhhhhHHHHHhhHHH
Confidence 3344444455554 56999999999999988776664433 2 1344555566677766666665553
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=83.83 E-value=0.86 Score=35.60 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=45.6
Q ss_pred CCeEEEEcc--cHHHHHHHHHHHhcCCCCCCeEEEEcCCh-----hhhh---hcCcCCC--c-cccChHHHhhcCCEEEE
Q psy316 64 WTKVGFIGA--GNMAQAVATSLIRTGLCIPAQIIASAPSE-----RFKL---HWPEPMD--F-ALNDNHRIIKEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~--G~mG~aia~~L~~~G~~~~~~V~v~~r~~-----e~~~---~l~~~~g--~-~~~s~~e~~~~aDvIil 130 (341)
..||+|||= .++..+++..+.+-|. +++++.... +-.+ .+..+.+ + ...+++++++++|+|..
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~g~----~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt 78 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKMGM----NFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYT 78 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTC----EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCC----EEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheec
Confidence 468999994 5899999999988885 888887632 1111 1111112 3 66788999999999987
Q ss_pred ee
Q psy316 131 AM 132 (341)
Q Consensus 131 aV 132 (341)
-+
T Consensus 79 ~~ 80 (161)
T d1vlva2 79 DV 80 (161)
T ss_dssp CC
T ss_pred cc
Confidence 55
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.38 E-value=0.52 Score=40.90 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=27.4
Q ss_pred CeEE-EEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 65 TKVG-FIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 65 ~kIg-iIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
+||+ |.| +|-+|+.++..|++.|+ +|++.+|.+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~----~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY----EVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC----EEEEEECCC
Confidence 5895 555 59999999999999994 999998854
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=83.31 E-value=0.5 Score=37.77 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=25.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA 98 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~ 98 (341)
|||||=|.|++|..+.+.|...++ +|...+
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i----~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGV----EVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC----CEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCC----EEEEEC
Confidence 689999999999999999988875 665554
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=83.04 E-value=0.27 Score=41.94 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=54.5
Q ss_pred CeEEEEcc--cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcC---CC----c--cccChHHHh--hcCCEEEEe
Q psy316 65 TKVGFIGA--GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEP---MD----F--ALNDNHRII--KEAEYVFLA 131 (341)
Q Consensus 65 ~kIgiIG~--G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~---~g----~--~~~s~~e~~--~~aDvIila 131 (341)
++|.=+|+ |.+...|++.+...| .|+.++++++.++..++. ++ + ...+..+.. ...|.||+-
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~~g-----~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld 161 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNGKG-----TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD 161 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSS-----EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred CEEEEeeeeCcHHHHHHHHHhCCCc-----EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec
Confidence 68888876 556666776664454 899999999877654431 21 2 223333333 247999988
Q ss_pred eChHHHHHHHHHhhhcccccCCCcEEEEecCCCCHHHHHH
Q psy316 132 MKPQYLDSAIQGLVNDKVTLNSSRCIISMLVGVDLETLKK 171 (341)
Q Consensus 132 V~~~~v~~vl~~i~~~~l~~~~~~iIVs~~agi~~~~l~~ 171 (341)
+|... ++++++ ...| ++|-.++.... +++++.+
T Consensus 162 ~p~p~--~~l~~~-~~~L--KpGG~lv~~~P--~i~Qv~~ 194 (250)
T d1yb2a1 162 IPDPW--NHVQKI-ASMM--KPGSVATFYLP--NFDQSEK 194 (250)
T ss_dssp CSCGG--GSHHHH-HHTE--EEEEEEEEEES--SHHHHHH
T ss_pred CCchH--HHHHHH-HHhc--CCCceEEEEeC--CcChHHH
Confidence 86321 223333 4445 56666654433 3444443
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.70 E-value=0.49 Score=40.35 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=28.1
Q ss_pred EEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCCh
Q psy316 67 VGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSE 101 (341)
Q Consensus 67 IgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~ 101 (341)
|.|||+|.-|.+-|..|.++|+ +|+|++++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~----~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGL----NVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTC----CEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCC----CEEEEecCC
Confidence 7899999999999999999995 899998753
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=82.29 E-value=0.71 Score=33.89 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=28.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCChh
Q psy316 63 MWTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPSER 102 (341)
Q Consensus 63 m~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e 102 (341)
.++++.|||.|.+|.-+|..|.+.+. ...+|+++.|++.
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~~~-~g~~Vtli~~~~~ 55 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAYKA-RGGQVDLAYRGDM 55 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSC-TTCEEEEEESSSS
T ss_pred cCCeEEEECCChHHHHHHHHhHhhcc-cccccceeccccc
Confidence 45789999999999999977655421 1248999888643
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=82.13 E-value=0.5 Score=40.73 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=27.9
Q ss_pred eEEEEcccHHHHHHHHHHH-----hcCCCCCCeEEEEcCChh
Q psy316 66 KVGFIGAGNMAQAVATSLI-----RTGLCIPAQIIASAPSER 102 (341)
Q Consensus 66 kIgiIG~G~mG~aia~~L~-----~~G~~~~~~V~v~~r~~e 102 (341)
-|.|||+|..|..+|..|. ++|+ +|++++|++.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~----~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDL----KVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTC----CEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCC----cEEEEcCCCC
Confidence 4899999999999999996 4675 8999998653
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=82.00 E-value=3.3 Score=34.25 Aligned_cols=85 Identities=16% Similarity=0.136 Sum_probs=50.8
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCccccChHHH-hhcCCEEEEee---ChHHHH
Q psy316 64 WTKVGFIG-AGNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDFALNDNHRI-IKEAEYVFLAM---KPQYLD 138 (341)
Q Consensus 64 ~~kIgiIG-~G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~~~~s~~e~-~~~aDvIilaV---~~~~v~ 138 (341)
...+-|.| .|-||.++++.|.+.|. .+|.++.|+..+.+...+. ..++ ...+.+.++.+ .+..+.
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga---~~vvl~~R~~~~~~~~~~~-------~~~l~~~g~~v~~~~~Dv~d~~~~~ 78 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGA---PHLLLVSRSGPDADGAGEL-------VAELEALGARTTVAACDVTDRESVR 78 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTC---SEEEEEESSGGGSTTHHHH-------HHHHHHTTCEEEEEECCTTCHHHHH
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCC---CEEEEEeCCccCHHHHHHH-------HHHHHhccccccccccccchHHHHH
Confidence 35677777 58999999999999994 3688888875544332220 1111 12355666555 346677
Q ss_pred HHHHHhhhcccccCCCcEEEEecC
Q psy316 139 SAIQGLVNDKVTLNSSRCIISMLV 162 (341)
Q Consensus 139 ~vl~~i~~~~l~~~~~~iIVs~~a 162 (341)
.++..+ .... +-..|++..+
T Consensus 79 ~~~~~i-~~~~---~i~~vv~~ag 98 (259)
T d2fr1a1 79 ELLGGI-GDDV---PLSAVFHAAA 98 (259)
T ss_dssp HHHHTS-CTTS---CEEEEEECCC
T ss_pred Hhhccc-cccc---cccccccccc
Confidence 777766 4422 2234555543
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=81.96 E-value=0.45 Score=34.67 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=25.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEcCC
Q psy316 64 WTKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASAPS 100 (341)
Q Consensus 64 ~~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~r~ 100 (341)
.++|.|||.|+=|.-++..|.+.+- +.+++..|+
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak---~v~~~~~r~ 65 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAK---HPIYQSLLG 65 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSC---SSEEEECTT
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcC---EEEEEEecC
Confidence 4789999999999999999977652 234455444
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=81.87 E-value=0.7 Score=37.03 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=25.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhcCCCCCCeEEEEc
Q psy316 65 TKVGFIGAGNMAQAVATSLIRTGLCIPAQIIASA 98 (341)
Q Consensus 65 ~kIgiIG~G~mG~aia~~L~~~G~~~~~~V~v~~ 98 (341)
+||||=|.|++|..+.+.+++.+.-+.-+|...+
T Consensus 2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN 35 (173)
T d1obfo1 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN 35 (173)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence 6899999999999999999875432233555554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=81.02 E-value=1.8 Score=34.10 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=51.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhhhhhcCcCCCc--cc----cChHH-Hh-----hcCCEEEE
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERFKLHWPEPMDF--AL----NDNHR-II-----KEAEYVFL 130 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~~~~l~~~~g~--~~----~s~~e-~~-----~~aDvIil 130 (341)
..+|.|.|+ |.+|.+.++-....|. +|+...+++++.+.+++ +|. .. .+..+ +. ...|+||=
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~Ga----~vi~~~~~~~~~~~~~~-~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D 104 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLKGC----KVVGAAGSDEKIAYLKQ-IGFDAAFNYKTVNSLEEALKKASPDGYDCYFD 104 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHTTC----EEEEEESSHHHHHHHHH-TTCSEEEETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEeCCCchhHHHHHHHHccCC----EEEEeCCCHHHHHHHHh-hhhhhhcccccccHHHHHHHHhhcCCCceeEE
Confidence 357888887 7788888777777774 89999999988887766 564 11 11122 22 24889998
Q ss_pred eeChHHHHHHHHHh
Q psy316 131 AMKPQYLDSAIQGL 144 (341)
Q Consensus 131 aV~~~~v~~vl~~i 144 (341)
++-.+.+.+.++-+
T Consensus 105 ~vG~~~~~~~~~~l 118 (182)
T d1v3va2 105 NVGGEFLNTVLSQM 118 (182)
T ss_dssp SSCHHHHHHHGGGE
T ss_pred ecCchhhhhhhhhc
Confidence 88766665555444
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.64 E-value=0.61 Score=38.70 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=29.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcCChhh
Q psy316 65 TKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAPSERF 103 (341)
Q Consensus 65 ~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r~~e~ 103 (341)
.||-|.|+ |.||.++++.|.++| ++|++++|+++.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G----~~V~~~~~~~~~ 38 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNG----YTVLNIDLSAND 38 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT----EEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC----CEEEEEECCchh
Confidence 47877766 899999999999999 499999998653
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.18 E-value=0.89 Score=39.42 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=26.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhcCCCCCCeEEEEcC
Q psy316 64 WTKVGFIGA-GNMAQAVATSLIRTGLCIPAQIIASAP 99 (341)
Q Consensus 64 ~~kIgiIG~-G~mG~aia~~L~~~G~~~~~~V~v~~r 99 (341)
+++|.|.|+ |-+|+.+++.|.+.|+ +|++.+|
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~----~V~~~d~ 48 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQ----KVVGLDN 48 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC----EEEEEEC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC----EEEEEEC
Confidence 356777755 9999999999999994 9998875
|