Psyllid ID: psy3174
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 265 | 2.2.26 [Sep-21-2011] | |||||||
| Q28104 | 308 | Coatomer subunit epsilon | yes | N/A | 0.815 | 0.701 | 0.381 | 1e-40 | |
| O89079 | 308 | Coatomer subunit epsilon | yes | N/A | 0.811 | 0.698 | 0.394 | 1e-40 | |
| Q5RFR8 | 308 | Coatomer subunit epsilon | yes | N/A | 0.815 | 0.701 | 0.377 | 2e-40 | |
| O14579 | 308 | Coatomer subunit epsilon | no | N/A | 0.815 | 0.701 | 0.377 | 4e-40 | |
| Q60445 | 308 | Coatomer subunit epsilon | yes | N/A | 0.815 | 0.701 | 0.381 | 6e-40 | |
| Q5ZIK9 | 308 | Coatomer subunit epsilon | yes | N/A | 0.784 | 0.675 | 0.381 | 4e-37 | |
| Q9SA78 | 292 | Coatomer subunit epsilon- | yes | N/A | 0.796 | 0.722 | 0.300 | 2e-25 | |
| O64748 | 293 | Coatomer subunit epsilon- | no | N/A | 0.788 | 0.713 | 0.296 | 3e-24 | |
| P0C541 | 297 | Coatomer subunit epsilon- | yes | N/A | 0.796 | 0.710 | 0.305 | 5e-24 | |
| A2XY73 | 297 | Coatomer subunit epsilon- | N/A | N/A | 0.796 | 0.710 | 0.305 | 1e-23 |
| >sp|Q28104|COPE_BOVIN Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 145/262 (55%), Gaps = 46/262 (17%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ+KY V
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGV 68
Query: 62 VLEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF--------- 92
VL+E P EL +++ AEYL+ S+ + + F
Sbjct: 69 VLDEIKPSSAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 128
Query: 93 --------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AW
Sbjct: 129 YDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 188
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
V +A +KL +A+Y Q++ DK T +L+N Q A +AQ ++E A +LQ D
Sbjct: 189 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 248
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+TLIN +V + LGK E++
Sbjct: 249 HPETLINLVVLSQHLGKPPEVT 270
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Bos taurus (taxid: 9913) |
| >sp|O89079|COPE_MOUSE Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 144/261 (55%), Gaps = 46/261 (17%)
Query: 3 STADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVV 62
S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ+KY VV
Sbjct: 10 SGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVV 69
Query: 63 LEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF---------- 92
L+E P EL +++ AEYL+ ++ S + F
Sbjct: 70 LDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFH 129
Query: 93 -------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWV 139
G LE A+ I L + R DLA KELK MQD+DED TLTQL +AWV
Sbjct: 130 DQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWV 189
Query: 140 HIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDS 196
++A +KL EA+Y Q+L DK T +L+N Q A AQ ++E A +LQ D
Sbjct: 190 NLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGH 249
Query: 197 EDTLINNMVTAGRLGKGNEMS 217
+TLIN +V + LGK E++
Sbjct: 250 PETLINLIVLSQHLGKPPEVT 270
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Mus musculus (taxid: 10090) |
| >sp|Q5RFR8|COPE_PONAB Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 144/262 (54%), Gaps = 46/262 (17%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ+K+ V
Sbjct: 9 TSGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPETDVERDVFLYRAYLAQRKFGV 68
Query: 62 VLEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF--------- 92
VL+E P EL +++ A+YL+ S+ S + F
Sbjct: 69 VLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYL 128
Query: 93 --------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
G LE A+ + L + R DLA KELK MQD DED TLTQL +AW
Sbjct: 129 HDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAW 188
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
V +A +KL +A+Y Q++ DK T +L+N Q A +AQ ++E A LLQ D
Sbjct: 189 VSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSG 248
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+TL+N +V + LGK E++
Sbjct: 249 YPETLVNLIVLSQHLGKPPEVT 270
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Pongo abelii (taxid: 9601) |
| >sp|O14579|COPE_HUMAN Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 144/262 (54%), Gaps = 46/262 (17%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ+K+ V
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGV 68
Query: 62 VLEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF--------- 92
VL+E P EL +++ A+YL+ S+ S + F
Sbjct: 69 VLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYL 128
Query: 93 --------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
G LE A+ + L + R DLA KELK MQD DED TLTQL +AW
Sbjct: 129 HDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAW 188
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
V +A +KL +A+Y Q++ DK T +L+N Q A +AQ ++E A LLQ D
Sbjct: 189 VSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSG 248
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+TL+N +V + LGK E++
Sbjct: 249 YPETLVNLIVLSQHLGKPPEVT 270
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Homo sapiens (taxid: 9606) |
| >sp|Q60445|COPE_CRIGR Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 144/262 (54%), Gaps = 46/262 (17%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P +E+D ++ R+Y+AQ+KY V
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGV 68
Query: 62 VLEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF--------- 92
VL+E P EL +++ A+YL+ ++ + + F
Sbjct: 69 VLDEIKPSSAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYF 128
Query: 93 --------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
G LE A+ I L + R DLA KELK MQD+DED TLTQL +AW
Sbjct: 129 HDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 188
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
V++A +KL EA+Y Q+L DK T +L+N Q A AQ ++E A +LQ D
Sbjct: 189 VNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSG 248
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+TLIN +V + LGK E++
Sbjct: 249 HPETLINLIVLSQHLGKPPEVT 270
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. Cricetulus griseus (taxid: 10029) |
| >sp|Q5ZIK9|COPE_CHICK Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 140/254 (55%), Gaps = 46/254 (18%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEE---K 66
DELFDV+NS+Y+G YQ I E QR+K ++P+ E+D ++ RSY+AQ+KY VVL+E
Sbjct: 17 DELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKAN 76
Query: 67 LPEELSCIKVLAEYLSIPSKN-----------------GSSNF----------------- 92
EL +++ AEYLS S+ ++ F
Sbjct: 77 ASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAA 136
Query: 93 ------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD 146
G LE A+ I L + R DLA KELK MQ++DED TLTQL +AWV++A +
Sbjct: 137 LRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGE 196
Query: 147 KLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDSEDTLINN 203
KL +A+Y Q++ DK ST +L+N Q A +AQ K+++A +LQ D +TLIN
Sbjct: 197 KLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINF 256
Query: 204 MVTAGRLGKGNEMS 217
+V + LGK E++
Sbjct: 257 VVLSQHLGKPPEVT 270
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Gallus gallus (taxid: 9031) |
| >sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 130/263 (49%), Gaps = 52/263 (19%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL---EEK 66
D LF++RN +YLG YQ I + + + ++E+D V R+Y+A Y++V+ +E
Sbjct: 8 DHLFNLRNHFYLGAYQAAINNSE-IPNLSQEDIVERDCLVHRAYIALGSYQLVISEIDEA 66
Query: 67 LPEELSCIKVLAEYLSIPSKNGSS------------------------------------ 90
L +K+LA YLS P S+
Sbjct: 67 AATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEA 126
Query: 91 ----NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD 146
+ G ++++AL + ++ M+R+D A K+L+VMQ DEDHTLTQL SAW+++A
Sbjct: 127 LKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 186
Query: 147 KLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSED--TLINN 203
K+ EA+ QD +KY T +++N + + +EEA LL + D++D TL N
Sbjct: 187 KIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANL 246
Query: 204 MVTAGRLGKG-----NEMSVSPP 221
+V + +GK N++ +S P
Sbjct: 247 VVCSLHVGKSSSRYLNQLKLSHP 269
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64748|COPE2_ARATH Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 126/256 (49%), Gaps = 47/256 (18%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL---EEK 66
D LF++RN++YLG YQ I + + P+ +E+D V RSY+A Y++V+ +E
Sbjct: 9 DHLFNLRNNFYLGAYQTAINNSE-IANLSPENAVERDCLVFRSYIALGSYQLVISEIDES 67
Query: 67 LPEELSCIKVLAEYLSIPSKNGSS------------------------------------ 90
L +K+LA YLS P S+
Sbjct: 68 AATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNET 127
Query: 91 ----NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD 146
+ G +++ AL + ++ M+R + A K+L+VMQ DEDHTLTQL SAW+++A
Sbjct: 128 LKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 187
Query: 147 KLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSED--TLINN 203
K+ EA+ +D +KY T +++N + + ++EA LL + D++D TL N
Sbjct: 188 KIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANL 247
Query: 204 MVTAGRLGKGNEMSVS 219
+V + +GK + +S
Sbjct: 248 VVCSLHVGKSSSRHLS 263
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C541|COPE2_ORYSJ Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 57/268 (21%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRL---KATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK 66
D LF +RNS+Y+G YQ I Q + A P L E+D + RSY+A +++V++E
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEI 67
Query: 67 LP---EELSCIKVLAEYLSIPSKNGSS--------------------------------- 90
P L +++L YLS + S
Sbjct: 68 GPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERD 127
Query: 91 --------NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA 142
N G +E+ A+ + L M+R+D A K+L++MQ DEDHTLTQL +AWV +
Sbjct: 128 YAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLV 187
Query: 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDT----AGDSED 198
K+ EA QDL +KY +T +++N + L+ +E+A LL ++ A D+E
Sbjct: 188 MGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAE- 246
Query: 199 TLINNMVTAGRLGKG-----NEMSVSPP 221
TL N +V + LGK N++ ++ P
Sbjct: 247 TLANLVVCSLNLGKSASRYLNQLKLAHP 274
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2XY73|COPE2_ORYSI Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 57/268 (21%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRL---KATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK 66
D LF +R S+Y+G YQ I Q + A P L E+D + RSY+A +++V++E
Sbjct: 8 DHLFGLRYSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEI 67
Query: 67 LP---EELSCIKVLAEYLSIPSKNGSS--------------------------------- 90
P L +++LA YLS + S
Sbjct: 68 GPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERD 127
Query: 91 --------NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA 142
N G +E+ A+ + L M+R+D A K+L++MQ DEDHTLTQL +AWV +
Sbjct: 128 YAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLV 187
Query: 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDT----AGDSED 198
K+ EA QDL +KY +T +++N + L+ +E+A LL ++ A D+E
Sbjct: 188 MGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAE- 246
Query: 199 TLINNMVTAGRLGKG-----NEMSVSPP 221
TL N +V + LGK N++ ++ P
Sbjct: 247 TLANLVVCSLNLGKSASRYLNQLKLAHP 274
|
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Oryza sativa subsp. indica (taxid: 39946) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 265 | ||||||
| 307166543 | 299 | Coatomer subunit epsilon [Camponotus flo | 0.792 | 0.702 | 0.419 | 3e-46 | |
| 383847283 | 309 | PREDICTED: coatomer subunit epsilon-like | 0.818 | 0.702 | 0.404 | 9e-46 | |
| 328787128 | 309 | PREDICTED: coatomer subunit epsilon [Api | 0.818 | 0.702 | 0.396 | 8e-45 | |
| 348505026 | 251 | PREDICTED: coatomer subunit epsilon-like | 0.750 | 0.792 | 0.462 | 2e-44 | |
| 307214673 | 299 | Coatomer subunit epsilon [Harpegnathos s | 0.792 | 0.702 | 0.407 | 3e-44 | |
| 380015783 | 300 | PREDICTED: LOW QUALITY PROTEIN: coatomer | 0.818 | 0.723 | 0.393 | 3e-44 | |
| 348505022 | 302 | PREDICTED: coatomer subunit epsilon-like | 0.792 | 0.695 | 0.406 | 3e-42 | |
| 156536866 | 301 | PREDICTED: coatomer subunit epsilon-like | 0.796 | 0.700 | 0.417 | 6e-42 | |
| 410950896 | 257 | PREDICTED: coatomer subunit epsilon isof | 0.773 | 0.797 | 0.445 | 6e-42 | |
| 260783367 | 298 | hypothetical protein BRAFLDRAFT_287380 [ | 0.807 | 0.718 | 0.4 | 6e-42 |
| >gi|307166543|gb|EFN60610.1| Coatomer subunit epsilon [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 148/255 (58%), Gaps = 45/255 (17%)
Query: 8 EVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK- 66
+VDELFDVRN +Y+GNYQQCI E Q++K++ P+V++E+D + R+Y+AQ+K++VVL+E
Sbjct: 7 DVDELFDVRNHFYIGNYQQCINEAQKIKSSSPEVVMERDVLLYRAYIAQRKFRVVLDEIN 66
Query: 67 --LPEELSCIKVLAEYLSIPSKN-----------GSSNFGTH------------------ 95
P EL +K LA+Y + P + NF H
Sbjct: 67 NLSPPELQPLKTLADYFANPHRREAIIAELDKEANHPNFDNHNFLIVAATIYYHEKNLEA 126
Query: 96 ----------LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV 145
LE AL + YL M R DLA KELK+MQ+KD+D TLTQL AWV+I +
Sbjct: 127 ALRILHDVDHLECMALTLQIYLKMDRPDLARKELKMMQEKDDDATLTQLAQAWVNITSGG 186
Query: 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDSEDTLIN 202
DKL +A+Y Q++IDK+ ST ML+N Q I Q KYEEA LQ D ++ DTLIN
Sbjct: 187 DKLQDAYYIFQEMIDKHSSTSMLLNGQATCFIGQAKYEEAETALQESLDKDSNNPDTLIN 246
Query: 203 NMVTAGRLGKGNEMS 217
+V + +GK E++
Sbjct: 247 MIVVSQHMGKPPEVA 261
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383847283|ref|XP_003699284.1| PREDICTED: coatomer subunit epsilon-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 153/262 (58%), Gaps = 45/262 (17%)
Query: 1 MSSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYK 60
M+ +VDELFDV+N +Y+GNYQQCI E Q++K+T P+V +E+D ++ R+Y+AQ+K++
Sbjct: 10 MARQQQADVDELFDVKNHFYIGNYQQCINEAQKIKSTSPEVAMERDVFLYRAYIAQRKFR 69
Query: 61 VVLEE---KLPEELSCIKVLAEYLSIPSKN-----------GSSNFGTH----------- 95
VVL+E P +L +K+LA+Y + PS+ +N+ H
Sbjct: 70 VVLDEINNSSPMDLQPLKMLADYFANPSRREAIVMELQEATNRANYDNHNFLIVAATIYY 129
Query: 96 -----------------LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
LE AL + YL M R DLA KELK MQ+KD+D TLTQL AW
Sbjct: 130 HEKNLEAALRILRNVDHLECLALTLQIYLKMDRLDLAKKELKTMQEKDDDATLTQLAQAW 189
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
++I++ DKL +A+Y Q++IDK+ ST ML+N Q I Q KYEEA LQ D +
Sbjct: 190 LNISSGGDKLQDAYYIFQEMIDKHSSTSMLLNGQATCFIGQAKYEEAETALQESLDKDSN 249
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+ DTLIN +V + +GK E++
Sbjct: 250 NPDTLINMIVLSQHMGKPPEVA 271
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328787128|ref|XP_393328.2| PREDICTED: coatomer subunit epsilon [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 152/262 (58%), Gaps = 45/262 (17%)
Query: 1 MSSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYK 60
M+ +VDELFDV+N +Y+GNYQQCI E Q++K++ P+V++E+D ++ R+Y+AQ+K++
Sbjct: 10 MARQQQADVDELFDVKNHFYIGNYQQCINEAQKIKSSSPEVIMERDVFLYRAYIAQRKFR 69
Query: 61 VVLEE---KLPEELSCIKVLAEYLSIPSKN-----------GSSNFGTH----------- 95
VVL+E P +L +K+LA+Y + P + +N+ H
Sbjct: 70 VVLDEINNSSPPDLQPLKMLADYFANPCRREAIVAELQQATNRTNYDNHNFLIVAATIYY 129
Query: 96 -----------------LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
LE AL + YL M R DLA KEL MQ+KD+D TLTQL AW
Sbjct: 130 HEKNLEAALRILRNVDHLECLALTLQIYLKMDRLDLAKKELVTMQEKDDDATLTQLAQAW 189
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
++I++ DKL +A+Y QD+IDK+ ST ML+N Q I Q KYEEA LQ D +
Sbjct: 190 LNISSGGDKLQDAYYIFQDMIDKHSSTSMLLNGQATCFIGQAKYEEAETALQESLDKDSN 249
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+ DTLIN +V + +GK E++
Sbjct: 250 NPDTLINMIVLSQHMGKPPEVA 271
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|348505026|ref|XP_003440062.1| PREDICTED: coatomer subunit epsilon-like isoform 3 [Oreochromis niloticus] | Back alignment and taxonomy information |
|---|
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 143/216 (66%), Gaps = 17/216 (7%)
Query: 8 EVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEE-- 65
+VDELFDV+N+YY+G+YQQCI E Q++K + P+ +E+D ++ R+Y+AQ+KY VVL++
Sbjct: 7 DVDELFDVKNAYYIGSYQQCINEAQKVKPSSPEKEIERDMFLYRAYIAQRKYAVVLDDIK 66
Query: 66 -KLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQD 124
P EL +K+ AEYLS SK+ A+ I L++ R DLA KELK MQ+
Sbjct: 67 ANSPPELQAVKMFAEYLSSESKS-----------MAMTIQVLLSLDRVDLARKELKKMQE 115
Query: 125 KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEE 184
+DED TLTQL +AWV+IA +KL +A+Y Q++ DKY ST +L+N Q A +AQ+K+EE
Sbjct: 116 QDEDATLTQLATAWVNIAVGGEKLQDAYYIFQEMSDKYSSTLLLLNGQAACYMAQNKWEE 175
Query: 185 AWDLLQ---DTAGDSEDTLINNMVTAGRLGKGNEMS 217
A +LQ D +TLIN +V LGK E++
Sbjct: 176 AEGVLQEALDKDSSHPETLINLIVLTQHLGKAPEVT 211
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|307214673|gb|EFN89602.1| Coatomer subunit epsilon [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 148/255 (58%), Gaps = 45/255 (17%)
Query: 8 EVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEE-- 65
++DELFDVRN +Y+GNYQQCI E Q++K + P+V +E++ ++ R+Y+AQ+K++VVL+E
Sbjct: 7 DIDELFDVRNHFYIGNYQQCINEAQKIKPSSPEVAMERNVFLYRAYIAQRKFRVVLDEIN 66
Query: 66 -KLPEELSCIKVLAEYLSIP----------------SKNGSSNFGT-------------- 94
P +L +K LA+Y + P S + + NF
Sbjct: 67 NASPLDLQPLKTLADYFANPHRREAIVAELDKAASHSNSDNHNFLIVAATIYYHEKNLEA 126
Query: 95 ---------HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV 145
HLE AL + YL M R DLA KELK MQ+KD+D TLTQL AW++I +
Sbjct: 127 ALRILHDVDHLECMALTLQIYLKMDRLDLARKELKAMQEKDDDATLTQLAQAWLNITSGG 186
Query: 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDSEDTLIN 202
DKL +A+Y Q++IDK+ ST ML+N Q I Q KYEEA LQ D ++ DTLIN
Sbjct: 187 DKLQDAYYIFQEMIDKHSSTSMLLNGQATCFIGQAKYEEAETALQEALDKDSNNPDTLIN 246
Query: 203 NMVTAGRLGKGNEMS 217
+V + +GK E++
Sbjct: 247 MIVLSQHMGKPPEVA 261
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380015783|ref|XP_003691875.1| PREDICTED: LOW QUALITY PROTEIN: coatomer subunit epsilon-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 151/262 (57%), Gaps = 45/262 (17%)
Query: 1 MSSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYK 60
M+ +VDELFDV+N +Y+GNYQQCI E Q++K++ P+V++E+D ++ R+Y+A +K++
Sbjct: 1 MARQQQADVDELFDVKNHFYIGNYQQCINEAQKIKSSSPEVIMERDVFLYRAYIAXRKFR 60
Query: 61 VVLEE---KLPEELSCIKVLAEYLSIPSKN-----------GSSNFGTH----------- 95
VVL+E P +L +K+LA+Y + P + +N+ H
Sbjct: 61 VVLDEINNSSPPDLQPLKMLADYFANPCRREAIVAELQQATNRTNYDNHNFLIVAATIYY 120
Query: 96 -----------------LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
LE AL + YL M R DLA KEL MQ+KD+D TLTQL AW
Sbjct: 121 HEKNLEAALRILRNVDHLECLALTLQIYLKMDRLDLAKKELITMQEKDDDATLTQLAQAW 180
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
++I++ DKL +A+Y QD+IDK+ ST ML+N Q I Q KYEEA LQ D +
Sbjct: 181 LNISSGGDKLQDAYYIFQDMIDKHSSTSMLLNGQATCFIGQAKYEEAETALQESLDKDSN 240
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+ DTLIN +V + +GK E++
Sbjct: 241 NPDTLINMIVLSQHMGKPPEVA 262
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|348505022|ref|XP_003440060.1| PREDICTED: coatomer subunit epsilon-like isoform 1 [Oreochromis niloticus] | Back alignment and taxonomy information |
|---|
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 148/256 (57%), Gaps = 46/256 (17%)
Query: 8 EVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEE-- 65
+VDELFDV+N+YY+G+YQQCI E Q++K + P+ +E+D ++ R+Y+AQ+KY VVL++
Sbjct: 7 DVDELFDVKNAYYIGSYQQCINEAQKVKPSSPEKEIERDMFLYRAYIAQRKYAVVLDDIK 66
Query: 66 -KLPEELSCIKVLAEYLSIPSKN-----------------GSSNF--------------- 92
P EL +K+ AEYLS SK ++ F
Sbjct: 67 ANSPPELQAVKMFAEYLSSESKRDVIVADLDKKMAKSVDAANTTFLLMAASIYYHEMNTD 126
Query: 93 --------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN 144
G LE A+ I L++ R DLA KELK MQ++DED TLTQL +AWV+IA
Sbjct: 127 AAIRTLHQGESLECMAMTIQVLLSLDRVDLARKELKKMQEQDEDATLTQLATAWVNIAVG 186
Query: 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDSEDTLI 201
+KL +A+Y Q++ DKY ST +L+N Q A +AQ+K+EEA +LQ D +TLI
Sbjct: 187 GEKLQDAYYIFQEMSDKYSSTLLLLNGQAACYMAQNKWEEAEGVLQEALDKDSSHPETLI 246
Query: 202 NNMVTAGRLGKGNEMS 217
N +V LGK E++
Sbjct: 247 NLIVLTQHLGKAPEVT 262
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|156536866|ref|XP_001604632.1| PREDICTED: coatomer subunit epsilon-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 107/256 (41%), Positives = 154/256 (60%), Gaps = 45/256 (17%)
Query: 7 NEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEE- 65
N+VDELFDV+N++Y+GNYQQCI E Q++K + P+V LE+D ++ R+Y+AQ+K+++VL+E
Sbjct: 6 NDVDELFDVKNNFYIGNYQQCINETQKVKPSSPEVELERDVFLYRAYIAQRKFRIVLDEI 65
Query: 66 --KLPEELSCIKVLAEYLSIPSKNG-----------SSNFGTH----------------- 95
PEEL +K+LAEY + P S+ TH
Sbjct: 66 KDSSPEELLPLKLLAEYFAHPDHRDKILSEIDKTTISAKLKTHNFKIVAATIYYHENNLE 125
Query: 96 -----------LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN 144
LE +AL + YL M R DLA KE+K MQ+KD+D TLTQL AWV++A
Sbjct: 126 SALRVLHKAENLECSALSVQIYLKMDRLDLATKEVKSMQEKDDDATLTQLALAWVNLATG 185
Query: 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTA---GDSEDTLI 201
+K EA+Y Q++I+KY ST ML+N + LI Q KYEEA D+LQ++ ++ DTLI
Sbjct: 186 REKYQEAYYIFQEMIEKYSSTTMLLNGKATSLILQQKYEEAEDVLQESLEKDSNNPDTLI 245
Query: 202 NNMVTAGRLGKGNEMS 217
N +V + +GK E++
Sbjct: 246 NMIVLSQHMGKPQEVA 261
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|410950896|ref|XP_003982138.1| PREDICTED: coatomer subunit epsilon isoform 3 [Felis catus] | Back alignment and taxonomy information |
|---|
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 141/222 (63%), Gaps = 17/222 (7%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P +E+D ++ R+YLAQ+KY V
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPGRDVERDVFLYRAYLAQRKYGV 68
Query: 62 VLEEKLPE---ELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKE 118
VL+E P EL +++ AEYL+ N S + A+ + L + R DLA KE
Sbjct: 69 VLDEIKPSSAPELQAVRMFAEYLA----NDSQSM-------AMTVQILLKLDRLDLARKE 117
Query: 119 LKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178
LK MQD+DED TLTQL +AWV++A DKL +A+Y Q++ DK ST +L+N Q A +A
Sbjct: 118 LKKMQDQDEDATLTQLATAWVNLAVGGDKLQDAYYIFQEMADKCSSTLLLLNGQAACHMA 177
Query: 179 QDKYEEAWDLLQ---DTAGDSEDTLINNMVTAGRLGKGNEMS 217
Q ++E A +LQ D +TLIN +V + LGK E++
Sbjct: 178 QGRWEAAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVT 219
|
Source: Felis catus Species: Felis catus Genus: Felis Family: Felidae Order: Carnivora Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|260783367|ref|XP_002586747.1| hypothetical protein BRAFLDRAFT_287380 [Branchiostoma floridae] gi|229271871|gb|EEN42758.1| hypothetical protein BRAFLDRAFT_287380 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 146/260 (56%), Gaps = 46/260 (17%)
Query: 4 TADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL 63
A +VDELFD++N++YLGNYQQCI E Q+LK + P V E+D Y+ R+Y+AQKKY VVL
Sbjct: 2 AAQGDVDELFDIKNAFYLGNYQQCINEAQKLKTSSPDVKTERDVYMYRAYIAQKKYGVVL 61
Query: 64 EEKL---PEELSCIKVLAEYLSIPSKN-----------------GSSNF----------- 92
+E EL +++ A YL+ K G++ F
Sbjct: 62 DEVSGVSASELQAVRLYANYLASDQKRDAVLKDLEGQMSSSLDVGNNTFLLMAASIYLHE 121
Query: 93 ------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVH 140
LE +AL + YL M R DLA KELK+MQ+KD+D TLTQ+ AW +
Sbjct: 122 DNYDAALRCLHQSDSLECSALTVQIYLKMDRVDLAKKELKLMQEKDDDATLTQMALAWFN 181
Query: 141 IANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDSE 197
+ +KL +AFY Q++IDK ++P+L+N Q A I Q KYE+A +LQ D ++
Sbjct: 182 MGVGGEKLQDAFYIFQEMIDKNSASPLLLNGQAACCIHQGKYEDAEGILQEAMDKDSNNP 241
Query: 198 DTLINNMVTAGRLGKGNEMS 217
+TLIN +V + LGK E+S
Sbjct: 242 ETLINMIVLSQHLGKAPEIS 261
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 265 | ||||||
| UNIPROTKB|F1RXG7 | 256 | LOC100525632 "Uncharacterized | 0.320 | 0.332 | 0.386 | 2.3e-22 | |
| FB|FBgn0027496 | 306 | epsilonCOP "epsilonCOP" [Droso | 0.460 | 0.398 | 0.384 | 2.3e-22 | |
| ZFIN|ZDB-GENE-041114-59 | 300 | cope "coatomer protein complex | 0.471 | 0.416 | 0.460 | 2.6e-22 | |
| UNIPROTKB|Q5ZIK9 | 308 | COPE "Coatomer subunit epsilon | 0.471 | 0.405 | 0.453 | 3e-21 | |
| UNIPROTKB|F1S7E0 | 308 | LOC100525632 "Uncharacterized | 0.471 | 0.405 | 0.453 | 3.9e-21 | |
| UNIPROTKB|E2RAT6 | 308 | COPE "Uncharacterized protein" | 0.471 | 0.405 | 0.453 | 4.9e-21 | |
| MGI|MGI:1891702 | 308 | Cope "coatomer protein complex | 0.471 | 0.405 | 0.468 | 1e-20 | |
| UNIPROTKB|O14579 | 308 | COPE "Coatomer subunit epsilon | 0.471 | 0.405 | 0.445 | 1.3e-20 | |
| UNIPROTKB|G3V8Q1 | 308 | Cope "Coatomer protein complex | 0.471 | 0.405 | 0.460 | 1.7e-20 | |
| UNIPROTKB|Q28104 | 308 | COPE "Coatomer subunit epsilon | 0.471 | 0.405 | 0.445 | 2.1e-20 |
| UNIPROTKB|F1RXG7 LOC100525632 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 164 (62.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXX 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YL Q
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLEQRKFGV 68
Query: 62 XXXXXXXXXX---SCIKVLAEYLSIPSK 86
I++ AEYL+ S+
Sbjct: 69 VLEEIKPSSSPELQAIRMFAEYLASDSR 96
|
|
| FB|FBgn0027496 epsilonCOP "epsilonCOP" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 208 (78.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 48/125 (38%), Positives = 73/125 (58%)
Query: 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFY 153
T+LE AL + L + R DLA + + MQ+ +D TLTQL AWV +A +++ +AF+
Sbjct: 135 TNLESMALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQMQDAFH 194
Query: 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTA---GDSEDTLINNMVTAGRL 210
Q+ +K+ TP L+N Q V + ++YEEA +L+++ + DTLIN MV A
Sbjct: 195 IYQEFCEKFKPTPALLNGQAVVHLGLERYEEADSVLRESLLKKHNDYDTLINLMVHAHLT 254
Query: 211 GKGNE 215
GK E
Sbjct: 255 GKPTE 259
|
|
| ZFIN|ZDB-GENE-041114-59 cope "coatomer protein complex, subunit epsilon" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 59/128 (46%), Positives = 83/128 (64%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R D+A KELK MQD+DED TLTQL +AWV++A +KL +AF
Sbjct: 135 GESLECMAMTVQILLKLDRVDMARKELKKMQDQDEDATLTQLATAWVNLAIGGEKLQDAF 194
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DKY T +L+N Q A +AQ+K++EA +LQD DS +TLIN +V
Sbjct: 195 YIFQEMSDKYSPTLLLLNGQAASHMAQNKWDEAESVLQDALDKDSGHPETLINLIVLTQH 254
Query: 210 LGKGNEMS 217
+GK E++
Sbjct: 255 MGKPFEVT 262
|
|
| UNIPROTKB|Q5ZIK9 COPE "Coatomer subunit epsilon" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 58/128 (45%), Positives = 83/128 (64%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ I L + R DLA KELK MQ++DED TLTQL +AWV++A +KL +A+
Sbjct: 143 GESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DK ST +L+N Q A +AQ K+++A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINFVVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
|
|
| UNIPROTKB|F1S7E0 LOC100525632 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 58/128 (45%), Positives = 82/128 (64%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AWV++A +KL +A+
Sbjct: 143 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSE--DTLINNMVTAGR 209
Y Q++ DK ST +L+N Q A +AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSSHPETLINLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
|
|
| UNIPROTKB|E2RAT6 COPE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 58/128 (45%), Positives = 82/128 (64%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AWV++A +KL +A+
Sbjct: 143 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DK ST +L+N Q A +AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
|
|
| MGI|MGI:1891702 Cope "coatomer protein complex, subunit epsilon" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 60/128 (46%), Positives = 80/128 (62%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ I L + R DLA KELK MQD+DED TLTQL +AWV++A +KL EA+
Sbjct: 143 GDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q+L DK T +L+N Q A AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
|
|
| UNIPROTKB|O14579 COPE "Coatomer subunit epsilon" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 57/128 (44%), Positives = 79/128 (61%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R DLA KELK MQD DED TLTQL +AWV +A +KL +A+
Sbjct: 143 GDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DK T +L+N Q A +AQ ++E A LLQ+ DS +TL+N +V +
Sbjct: 203 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
|
|
| UNIPROTKB|G3V8Q1 Cope "Coatomer protein complex, subunit epsilon (Predicted), isoform CRA_c" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 59/128 (46%), Positives = 80/128 (62%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ I L + R DLA KELK MQ++DED TLTQL +AWV++A +KL EA+
Sbjct: 143 GDGLECTAMTIQILLKLDRLDLARKELKRMQEQDEDATLTQLATAWVNLAMGGEKLQEAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q+L DK T +L+N Q A AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
|
|
| UNIPROTKB|Q28104 COPE "Coatomer subunit epsilon" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 57/128 (44%), Positives = 80/128 (62%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AWV +A +KL +A+
Sbjct: 143 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DK T +L+N Q A +AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q28104 | COPE_BOVIN | No assigned EC number | 0.3816 | 0.8150 | 0.7012 | yes | N/A |
| P0C541 | COPE2_ORYSJ | No assigned EC number | 0.3059 | 0.7962 | 0.7104 | yes | N/A |
| O89079 | COPE_MOUSE | No assigned EC number | 0.3946 | 0.8113 | 0.6980 | yes | N/A |
| Q9SA78 | COPE1_ARATH | No assigned EC number | 0.3003 | 0.7962 | 0.7226 | yes | N/A |
| Q5RFR8 | COPE_PONAB | No assigned EC number | 0.3778 | 0.8150 | 0.7012 | yes | N/A |
| Q5ZIK9 | COPE_CHICK | No assigned EC number | 0.3818 | 0.7849 | 0.6753 | yes | N/A |
| Q60445 | COPE_CRIGR | No assigned EC number | 0.3816 | 0.8150 | 0.7012 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 265 | |||
| pfam04733 | 288 | pfam04733, Coatomer_E, Coatomer epsilon subunit | 2e-51 |
| >gnl|CDD|218234 pfam04733, Coatomer_E, Coatomer epsilon subunit | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 2e-51
Identities = 93/254 (36%), Positives = 131/254 (51%), Gaps = 47/254 (18%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEE---K 66
DELF+VRN +YLGNYQ+ I E + + + L+E+D Y+ RSYLA Y++V+ E
Sbjct: 1 DELFNVRNYFYLGNYQKAINESD-VTSLSEEALVERDVYMYRSYLALGSYQIVISEIKES 59
Query: 67 LPEELSCIKVLAEYLSIPS---------------------------------KNGSSN-- 91
L +++LAEYL+ PS G +
Sbjct: 60 AATPLQAVRLLAEYLNSPSRKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDA 119
Query: 92 -----FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD 146
G +LE AL + L M+R DLA ++LK MQ DED TLTQL +AWV +A +
Sbjct: 120 LKHLHKGENLEAMALNVQILLKMHRIDLAEQQLKKMQQIDEDATLTQLANAWVKLAVGGE 179
Query: 147 KLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDSEDTLINN 203
K+ +A+Y Q+ +KY STP+L+N Q + +YEEA LL+ D +TLIN
Sbjct: 180 KIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINL 239
Query: 204 MVTAGRLGKGNEMS 217
+V A LGK E+S
Sbjct: 240 VVCALHLGKPAEVS 253
|
This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex. Length = 288 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 265 | |||
| KOG3081|consensus | 299 | 100.0 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.47 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.37 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.35 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.34 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.34 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.31 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.29 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.29 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.29 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.27 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.18 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.18 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.15 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.14 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.13 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.11 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.09 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.08 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.07 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.04 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.02 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.99 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.99 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.96 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.94 | |
| KOG1840|consensus | 508 | 98.93 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.91 | |
| KOG4626|consensus | 966 | 98.89 | ||
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.88 | |
| KOG4626|consensus | 966 | 98.87 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.86 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.82 | |
| KOG2002|consensus | 1018 | 98.8 | ||
| KOG1840|consensus | 508 | 98.79 | ||
| KOG1126|consensus | 638 | 98.77 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.76 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.75 | |
| KOG1129|consensus | 478 | 98.72 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.71 | |
| KOG0547|consensus | 606 | 98.71 | ||
| KOG1126|consensus | 638 | 98.7 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.7 | |
| KOG0624|consensus | 504 | 98.69 | ||
| KOG1173|consensus | 611 | 98.67 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.59 | |
| KOG0547|consensus | 606 | 98.55 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.54 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.51 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.5 | |
| KOG1155|consensus | 559 | 98.49 | ||
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.46 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.38 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.33 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.32 | |
| KOG2376|consensus | 652 | 98.31 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.3 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.3 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.27 | |
| KOG1129|consensus | 478 | 98.27 | ||
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.26 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.24 | |
| KOG2002|consensus | 1018 | 98.21 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.2 | |
| KOG1125|consensus | 579 | 98.17 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.16 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.16 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.14 | |
| KOG2076|consensus | 895 | 98.14 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.1 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.09 | |
| KOG1174|consensus | 564 | 98.04 | ||
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.01 | |
| KOG0624|consensus | 504 | 97.99 | ||
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.99 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.95 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.95 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.91 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.9 | |
| KOG4162|consensus | 799 | 97.9 | ||
| KOG0553|consensus | 304 | 97.9 | ||
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.89 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.87 | |
| KOG0550|consensus | 486 | 97.87 | ||
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.87 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.8 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.78 | |
| KOG3785|consensus | 557 | 97.78 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.78 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.77 | |
| KOG3060|consensus | 289 | 97.75 | ||
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.75 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.74 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.74 | |
| KOG4162|consensus | 799 | 97.72 | ||
| KOG2796|consensus | 366 | 97.71 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.7 | |
| KOG1173|consensus | 611 | 97.7 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.65 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.64 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.59 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.58 | |
| KOG0553|consensus | 304 | 97.56 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.53 | |
| KOG2003|consensus | 840 | 97.5 | ||
| KOG2076|consensus | 895 | 97.5 | ||
| KOG1155|consensus | 559 | 97.5 | ||
| KOG0550|consensus | 486 | 97.49 | ||
| PLN02789 | 320 | farnesyltranstransferase | 97.47 | |
| KOG1174|consensus | 564 | 97.46 | ||
| KOG1128|consensus | 777 | 97.44 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.42 | |
| KOG0548|consensus | 539 | 97.34 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| KOG3785|consensus | 557 | 97.32 | ||
| KOG3060|consensus | 289 | 97.27 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 97.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.24 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 97.19 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.12 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.08 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.96 | |
| KOG0495|consensus | 913 | 96.95 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.95 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.95 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.9 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.84 | |
| KOG0548|consensus | 539 | 96.83 | ||
| KOG0495|consensus | 913 | 96.79 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.77 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.75 | |
| KOG1125|consensus | 579 | 96.73 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.71 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.65 | |
| KOG3081|consensus | 299 | 96.62 | ||
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.6 | |
| KOG0543|consensus | 397 | 96.6 | ||
| KOG4340|consensus | 459 | 96.59 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.54 | |
| KOG0543|consensus | 397 | 96.52 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.51 | |
| KOG1156|consensus | 700 | 96.47 | ||
| KOG2053|consensus | 932 | 96.44 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.37 | |
| KOG4555|consensus | 175 | 96.35 | ||
| KOG1128|consensus | 777 | 96.35 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.3 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.22 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.19 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.17 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.16 | |
| KOG2471|consensus | 696 | 96.13 | ||
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.12 | |
| KOG1156|consensus | 700 | 96.07 | ||
| KOG2376|consensus | 652 | 96.04 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.99 | |
| KOG2003|consensus | 840 | 95.9 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.69 | |
| KOG1127|consensus | 1238 | 95.65 | ||
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.62 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.53 | |
| KOG4340|consensus | 459 | 95.5 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.32 | |
| KOG2300|consensus | 629 | 95.04 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.96 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.84 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.69 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.61 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.57 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 94.56 | |
| KOG4234|consensus | 271 | 94.54 | ||
| KOG4234|consensus | 271 | 94.54 | ||
| KOG2796|consensus | 366 | 94.41 | ||
| KOG1070|consensus | 1710 | 94.34 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.29 | |
| KOG1127|consensus | 1238 | 94.27 | ||
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.11 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 93.86 | |
| KOG1308|consensus | 377 | 93.86 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.74 | |
| KOG0545|consensus | 329 | 93.26 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.85 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.66 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.54 | |
| KOG2053|consensus | 932 | 92.52 | ||
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.2 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.16 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.1 | |
| KOG3364|consensus | 149 | 92.02 | ||
| KOG4648|consensus | 536 | 91.98 | ||
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.79 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 91.48 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.96 | |
| KOG1130|consensus | 639 | 90.94 | ||
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 90.74 | |
| KOG1915|consensus | 677 | 90.68 | ||
| KOG4555|consensus | 175 | 90.67 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 90.65 | |
| KOG2471|consensus | 696 | 90.24 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.65 | |
| KOG2610|consensus | 491 | 89.55 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.54 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.41 | |
| KOG3617|consensus | 1416 | 89.32 | ||
| KOG1586|consensus | 288 | 89.02 | ||
| KOG1915|consensus | 677 | 88.5 | ||
| KOG1586|consensus | 288 | 88.45 | ||
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.27 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 88.18 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.9 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 87.61 | |
| KOG2610|consensus | 491 | 87.41 | ||
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.16 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 86.72 | |
| KOG4642|consensus | 284 | 86.12 | ||
| PF12854 | 34 | PPR_1: PPR repeat | 85.89 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 85.79 | |
| KOG0376|consensus | 476 | 85.75 | ||
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 85.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 85.41 | |
| KOG2047|consensus | 835 | 85.23 | ||
| PF13041 | 50 | PPR_2: PPR repeat family | 84.93 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.71 | |
| KOG4648|consensus | 536 | 84.13 | ||
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 83.82 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 82.42 | |
| KOG1550|consensus | 552 | 82.18 | ||
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.01 | |
| KOG1585|consensus | 308 | 81.85 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 81.19 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 81.15 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.78 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.07 |
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=423.12 Aligned_cols=241 Identities=41% Similarity=0.648 Sum_probs=223.7
Q ss_pred CCCCccCCcchhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---CChHHHHHHHH
Q psy3174 1 MSSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---LPEELSCIKVL 77 (265)
Q Consensus 1 ~~~~~~~~~delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---~~~~l~~~~~~ 77 (265)
|++-+-+..|+||+|||+||+|||++||+++++...++ ...++++|+||+|||+|++..++++| +.|++++++.+
T Consensus 1 m~~~~~g~~d~LF~iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~ 78 (299)
T KOG3081|consen 1 MSSMEAGPEDELFNIRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLL 78 (299)
T ss_pred CCccccCcchhHHHHHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHH
Confidence 56655566699999999999999999999987766554 56789999999999999999999999 78889999999
Q ss_pred HHHhcCCCcCcc-------------------------------cc---------cCCCHHHHHHHHHHHHHcCChHHHHH
Q psy3174 78 AEYLSIPSKNGS-------------------------------SN---------FGTHLEINALKIHTYLTMYRNDLALK 117 (265)
Q Consensus 78 A~~l~~~~~~e~-------------------------------~~---------~~~~lE~~al~v~~~l~~~r~d~Aek 117 (265)
|.|+..+++++. ++ ..+++|+.++.|+|+++|+|+|.|++
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887543 11 18999999999999999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--
Q psy3174 118 ELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-- 195 (265)
Q Consensus 118 ~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-- 195 (265)
.+++|++|++|+|++|||++||++++|++++++|||+|+|+.+++|.|+.++||+|+|+|++|||+||+.+++++|++
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CHHHHHHHHHHHHHcCCCCccC-----------CCChhhhcHHHHHHHHHHHHhhcccc
Q psy3174 196 -SEDTLINNMVTAGRLGKGNEMS-----------VSPPFLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 196 -~pdtl~nl~~~~~~~Gk~~ea~-----------p~hp~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
+|+||+|++|++.++||++++. |.|||+++++++++.|||++.+|.++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDrl~~qy~~s 298 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDRLVLQYDTS 298 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999996643 99999999999999999999999875
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-58 Score=415.15 Aligned_cols=232 Identities=45% Similarity=0.668 Sum_probs=209.1
Q ss_pred cchhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---CChHHHHHHHHHHHhcCCC
Q psy3174 9 VDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---LPEELSCIKVLAEYLSIPS 85 (265)
Q Consensus 9 ~delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---~~~~l~~~~~~A~~l~~~~ 85 (265)
+||||+|||+||+|||++||++++ +.+.+++..+++++|+|||||++|+++.+++++ ++|.+++++++|+|+..+.
T Consensus 2 ~deLf~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 2 SDELFTVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp --TTHHHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTST
T ss_pred chHHHHHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCcc
Confidence 689999999999999999999986 777888899999999999999999999999999 7888999999999999865
Q ss_pred cCcc-------------------------------cc---------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 86 KNGS-------------------------------SN---------FGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 86 ~~e~-------------------------------~~---------~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.++. ++ -.+++|+++++||||++|||+|+|+|++++|.+|
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5432 10 1589999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
++|++++|||+|||+++.|++++++|+|+|+|+.+++|+|+.++|++|+|+|++|+|+||++++.++++. +||+|+|
T Consensus 161 ~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 161 DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHcCCCCccC-----------CCChhhhcHHHHHHHHHHHHhhcc
Q psy3174 203 NMVTAGRLGKGNEMS-----------VSPPFLFRSDETTATLDACGLQSN 241 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~-----------p~hp~~~~~~~~~~~FD~~~~~~~ 241 (265)
+|+|+.++||+.++. |+|||++++.++++.||+++.||+
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~~ky~ 290 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAVAKYA 290 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHhcC
Confidence 999999999995432 999999999999999999999995
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-12 Score=125.90 Aligned_cols=215 Identities=17% Similarity=0.150 Sum_probs=170.8
Q ss_pred CcchhH-HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHH
Q psy3174 8 EVDELF-DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEY 80 (265)
Q Consensus 8 ~~delf-~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~ 80 (265)
.+++++ ..+..+-.|+|..|+..+++.....|+. .+...++.++|+.+|+++.++..+ .++.......++..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 99 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPND-AEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARA 99 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHH
Confidence 555555 5588889999999999986665556553 345677889999999999777665 33334444455555
Q ss_pred hcCCCcCcc----------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHH
Q psy3174 81 LSIPSKNGS----------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNE 150 (265)
Q Consensus 81 l~~~~~~e~----------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~e 150 (265)
+...+..+. ...+...+....++.++...|+++.|.+.|+++++.+|++.-..+..+++.+.. |++++
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--~~~~~ 177 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAE--NRFDE 177 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHC--CCHHH
Confidence 444443221 123567888999999999999999999999999999999887777777776655 78999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------
Q psy3174 151 AFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS---------- 217 (265)
Q Consensus 151 A~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~---------- 217 (265)
|..+++++....|.++..+..+|.++..+|++++|...++++++. +++++.+++.++...|+..++.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 257 (899)
T TIGR02917 178 ARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA 257 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999899999999999999999999999999988 6778899999999999987754
Q ss_pred CCChhhhc
Q psy3174 218 VSPPFLFR 225 (265)
Q Consensus 218 p~hp~~~~ 225 (265)
|++|.+..
T Consensus 258 ~~~~~~~~ 265 (899)
T TIGR02917 258 PNSPLAHY 265 (899)
T ss_pred CCCchHHH
Confidence 77776543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-11 Score=119.68 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++.+....++.+|..+|+++.|.+.|+++++..|+++.+....+|+.... ++ .+|..+++++....|+++.++..+
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~-~~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL--KD-PRALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--Cc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence 444555555555555555555555555555555555544444444443332 22 345555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
|.++..+|++++|..+++++++. +|++..+++.++...|+..
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence 55555555555555555555544 4445555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-11 Score=116.95 Aligned_cols=148 Identities=11% Similarity=-0.003 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+........++.++..+|+++.|.+.|+++++.+|+..-..+..+++.+.. |++++|...|+++.+..|..+.+++.+
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL--GDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455667888899999999999999999999999999887766677766555 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCccC----------CCChhhhcH----HHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSE---DTLINNMVTAGRLGKGNEMS----------VSPPFLFRS----DETTATLDA 235 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~p---dtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~----~~~~~~FD~ 235 (265)
|.++..+|++++|...++++++.+| ..+.+++.++..+|+..++. |++|.+... ......|++
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 9999999999999999999999944 47789999999999987765 888865543 223445666
Q ss_pred HHhhccc
Q psy3174 236 CGLQSNS 242 (265)
Q Consensus 236 ~~~~~~~ 242 (265)
....|..
T Consensus 486 A~~~~~~ 492 (615)
T TIGR00990 486 AIEKFDT 492 (615)
T ss_pred HHHHHHH
Confidence 6665553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-11 Score=116.75 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=133.5
Q ss_pred hccHHHHHHHHhhcccCC--hhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH-HHHHHHHHHHhcCCCcCcc---
Q psy3174 21 LGNYQQCIKEGQRLKATD--PKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE-LSCIKVLAEYLSIPSKNGS--- 89 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~~--~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~-l~~~~~~A~~l~~~~~~e~--- 89 (265)
.|.|.+|+..+++..... .........+...+|..+|+++.++..+ ..|. ..++..++..+...++.+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 368999988875543322 1222334455577888999998777666 2333 4455555555444433322
Q ss_pred ------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 90 ------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 90 ------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
...|++.++.+.++.++..+|++++|.+.|+++++++|++.......+.+.... |++++|...|+++...+|
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE--GSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCC
Confidence 335889999999999999999999999999999999999886655555554444 789999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.++.+++.+|.++..+|++++|...++++++.+|
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999998844
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=107.00 Aligned_cols=211 Identities=12% Similarity=0.052 Sum_probs=154.4
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc----CChH------HHHHHHHHHHh
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK----LPEE------LSCIKVLAEYL 81 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei----~~~~------l~~~~~~A~~l 81 (265)
++........|+|.+|+..++++...+|++. +....+.+.+..+|+++.++.-+ ..|. ......++..+
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETV-ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4667778888999999999877766666542 33445577889999998665543 2211 12333445444
Q ss_pred cCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHH
Q psy3174 82 SIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLN 149 (265)
Q Consensus 82 ~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~ 149 (265)
...++.+. ...+.+......++.++...|+++.|.+.++++.+.++++.-..++..|..++ ...++++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 43333221 22467788888999999999999999999999998877654333333333333 3458899
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH----HHHHHHHHHHHcCCCCccC--------
Q psy3174 150 EAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED----TLINNMVTAGRLGKGNEMS-------- 217 (265)
Q Consensus 150 eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd----tl~nl~~~~~~~Gk~~ea~-------- 217 (265)
+|...|+++....|.+...+..+|.++.++|++++|..++.++++.+|+ ++..++.++..+|+.+++.
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988888889999999999999999999999987443 5678888999999987754
Q ss_pred --CCChhh
Q psy3174 218 --VSPPFL 223 (265)
Q Consensus 218 --p~hp~~ 223 (265)
|+++..
T Consensus 278 ~~p~~~~~ 285 (389)
T PRK11788 278 EYPGADLL 285 (389)
T ss_pred hCCCchHH
Confidence 776654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=115.52 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=58.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHH----HHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNE----AFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~e----A~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+.++...||+++|...++++++.+|++.......+.+.... |++++ |...|+++....|+++..+..+|.++..
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~--G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS--GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555543333333332222 33443 5555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 179 QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
+|++++|...++++++. +|++..+++.++..+|+.+++
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55555555555555554 444555555555555555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-10 Score=111.75 Aligned_cols=220 Identities=15% Similarity=0.009 Sum_probs=157.8
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChH-HHHHHHHHHHhcCCCcCc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEE-LSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~-l~~~~~~A~~l~~~~~~e 88 (265)
+-..-.|++++++..+.++....|+... ... ....++.+|+++.++... .++. .......+..+...++.+
T Consensus 152 ~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~-~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 152 RTLVLMDKELQAISLARTQAQEVPPRGD-MIA-TCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHHCCChHHHHHHHHHHHHhCCCCHH-HHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence 4566789999999887555443433211 111 124578889988665433 1111 112222233333333322
Q ss_pred c---------cccCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHH
Q psy3174 89 S---------SNFGTHLEINALKIHTYLTMYRNDL----ALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 89 ~---------~~~~~~lE~~al~v~~~l~~~r~d~----Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
. ...|+++.....++.+|..+|++++ |...++++++.+|+++-+....+++.... |++++|...+
T Consensus 230 eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~--g~~~eA~~~l 307 (656)
T PRK15174 230 EAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT--GQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 1 3458899999999999999999996 89999999999999987777777776655 7899999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 156 QDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 156 ~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
+++....|+++.+...+|.++.++|++++|...++++++.+|+ ....++.++..+|+.+++. |+|+
T Consensus 308 ~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~- 386 (656)
T PRK15174 308 QQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL- 386 (656)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-
Confidence 9999999999999999999999999999999999999988655 3455688889999988765 7764
Q ss_pred hhcHHHHHHHHHHHHhhc
Q psy3174 223 LFRSDETTATLDACGLQS 240 (265)
Q Consensus 223 ~~~~~~~~~~FD~~~~~~ 240 (265)
-..+.+.-..+|++.+..
T Consensus 387 ~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 387 PQSFEEGLLALDGQISAV 404 (656)
T ss_pred hhhHHHHHHHHHHHHHhc
Confidence 344444444555544443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.2e-12 Score=112.04 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+...+...+.++.+.|+++.|.+.|+++++.+|++.-.....+|+.+.. |++.++..+++.+....|.++.++..+
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~--~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM--GDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 678899999999999999999999999999999999998888888886545 678888889988888888888888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|.+++.+|++++|..++++++.. ||.++.+++-++...|+.+++.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999985 8889999999999999988754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=108.83 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=141.1
Q ss_pred HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---------CChHHHHHHHHH--HHhc
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---------LPEELSCIKVLA--EYLS 82 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---------~~~~l~~~~~~A--~~l~ 82 (265)
..+-+...|+|.+|+..++.+....|+.. ....+..+.|+.+|+++.++..+ +++....++..+ ..+.
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHK-EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 35666777888888887766666555543 23445567788888877544433 111121111111 1111
Q ss_pred ----CCCcCcc----c----ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccH
Q psy3174 83 ----IPSKNGS----S----NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKL 148 (265)
Q Consensus 83 ----~~~~~e~----~----~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~ 148 (265)
..+...- . ..+++++..+..+..+...|+++.|.+.+.+.++..||+.-.. +...+..+ ..++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l--~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL--KPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc--CCCCh
Confidence 1110000 1 2347999999999999999999999999999999888886321 11222222 23678
Q ss_pred HHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCcc
Q psy3174 149 NEAFYTLQDLIDKYGSTP--MLVNAQVAVLIAQDKYEEAWDLLQ--DTAGD--SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 149 ~eA~~~~~el~~~~p~t~--~lLn~~A~~~~~~g~~eEAe~~l~--~al~~--~pdtl~nl~~~~~~~Gk~~ea 216 (265)
..+...++.....+|+++ .++..+|++++++|+|++|.+.++ .+++. ++++..+++.+++.+|+.+++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999 899999999999999999999999 57666 666788999999999998664
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=103.66 Aligned_cols=148 Identities=18% Similarity=0.083 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
.-...+.-++.-|+..|++..|++.++++++.||.+..+.+++|.+.-.. |..+.|...|++....+|.+..+||+-|
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~--Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL--GENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--CChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 34567777888999999999999999999999999999999999987766 6699999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCccC----------CCChhhhc-----------HH
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFR-----------SD 227 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~-----------~~ 227 (265)
+-++.||+++||...+.+|++. .++++.|++.|+..+|++..+. |+.|...- +.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 9999999999999999999997 7889999999999999987543 66665432 22
Q ss_pred HHHHHHHHHHhhcccc
Q psy3174 228 ETTATLDACGLQSNSE 243 (265)
Q Consensus 228 ~~~~~FD~~~~~~~~~ 243 (265)
....-||++..+.-+.
T Consensus 191 ~Ar~~~~~~~~~~~~~ 206 (250)
T COG3063 191 PARLYLERYQQRGGAQ 206 (250)
T ss_pred HHHHHHHHHHhccccc
Confidence 3445566666665433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-10 Score=115.91 Aligned_cols=229 Identities=8% Similarity=-0.019 Sum_probs=164.0
Q ss_pred CcchhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhc
Q psy3174 8 EVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLS 82 (265)
Q Consensus 8 ~~delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~ 82 (265)
++.-++..-+.+..|.+.+++..+.+.....|+.. ......+++...|+++.++... .+|.......++..+.
T Consensus 476 ~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~--~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 476 DAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW--QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred CHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH--HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 34446666677777888888885534334445432 1344456667899998665544 2222222233344333
Q ss_pred CCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHH
Q psy3174 83 IPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFY 153 (265)
Q Consensus 83 ~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~ 153 (265)
..++.+. ...|+.....+.+...+..+||+++|...|+++++.+|+ .-.....+.+.. ..|++++|..
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~--~lG~~deA~~ 630 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYR--QRHNVPAAVS 630 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH--HCCCHHHHHH
Confidence 3333221 223666666666566666779999999999999999996 544444444433 3488999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCC
Q psy3174 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSP 220 (265)
Q Consensus 154 ~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~h 220 (265)
.|+++....|+++..++.+|.++..+|++++|...++++++. +|+++.|++.++..+|+.+++. |+.
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999998 7789999999999999987754 777
Q ss_pred hhhhc----HHHHHHHHHHHHhhcc
Q psy3174 221 PFLFR----SDETTATLDACGLQSN 241 (265)
Q Consensus 221 p~~~~----~~~~~~~FD~~~~~~~ 241 (265)
.-+.. +.+....|+++-+.|.
T Consensus 711 a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 711 ALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHH
Confidence 65553 4667777999888654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-09 Score=99.60 Aligned_cols=206 Identities=12% Similarity=-0.027 Sum_probs=142.7
Q ss_pred HhhhhccHHHHHHHHhhcccCC---hhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcC
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATD---PKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKN 87 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~---~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~ 87 (265)
-.+-.|+|.+|+..++++.... +.........+.++|...|+++.++.-+ .++...+...++..+...++.
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 157 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW 157 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH
Confidence 3456899999999876554322 1122233445578889999988665544 223344455555554444432
Q ss_pred cc---------cccCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHH
Q psy3174 88 GS---------SNFGTH-----LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFY 153 (265)
Q Consensus 88 e~---------~~~~~~-----lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~ 153 (265)
+. ...+.+ ......++.+++.+|+++.|.+.++++++.+|++.-..+..+.+.... |++++|..
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~ 235 (389)
T PRK11788 158 QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ--GDYAAAIE 235 (389)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 21 111222 123445677888999999999999999999888776555555554444 78999999
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCccC----------CCC
Q psy3174 154 TLQDLIDKYGST-PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGNEMS----------VSP 220 (265)
Q Consensus 154 ~~~el~~~~p~t-~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ea~----------p~h 220 (265)
+|+++.+..|.. ...++.++.++..+|++++|...++++++.+|+ +..+++.++...|+.+++. |++
T Consensus 236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 236 ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 999999887764 457888999999999999999999999887444 6678888999999887654 777
Q ss_pred hhhh
Q psy3174 221 PFLF 224 (265)
Q Consensus 221 p~~~ 224 (265)
+.+.
T Consensus 316 ~~~~ 319 (389)
T PRK11788 316 RGFH 319 (389)
T ss_pred HHHH
Confidence 6554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=102.67 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=142.8
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHh---hhc-----CChH-HH-----H-HHHHHH
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL---EEK-----LPEE-LS-----C-IKVLAE 79 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l---~ei-----~~~~-l~-----~-~~~~A~ 79 (265)
.+-+...|+|.+|+..++++....|++ .....+..++|+.+|+++.++ ..+ .++. .. + +.+++.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~-~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRH-PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 567778888888888876666555554 233445568888888887666 333 1122 22 1 112222
Q ss_pred HhcCCCcCcc--------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHH
Q psy3174 80 YLSIPSKNGS--------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEA 151 (265)
Q Consensus 80 ~l~~~~~~e~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA 151 (265)
.....+...- ...+++++.....+..+...|+.+.|.+.+.+.++..+|.. ++..+..+.. ++++++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~---l~~l~~~l~~--~~~~~a 313 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER---LVLLIPRLKT--NNPEQL 313 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH---HHHHHhhccC--CChHHH
Confidence 2121111000 23578999999999999999999999999999999655553 2233333333 789999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCcc
Q psy3174 152 FYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 152 ~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ea 216 (265)
....++...++|+++.++..+|.+++++|+|++|.+.++++++.+|+ +...++.+...+|+.+++
T Consensus 314 l~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 314 EKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999555 556899999999997654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-09 Score=113.70 Aligned_cols=198 Identities=12% Similarity=0.012 Sum_probs=142.5
Q ss_pred HhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcC---
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKN--- 87 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~--- 87 (265)
...-.|+|.+|+..+++.....|+.. .....++++|..+|+++.++..+ .+........++.|+...++.
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P~~~-~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDPGSV-WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 34457999999998766555555532 23456688899999998665544 222222222233332221110
Q ss_pred -----------------------------------------cc-----cccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 88 -----------------------------------------GS-----SNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 88 -----------------------------------------e~-----~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
+. ..+|.++.....++.++..+|++++|.+.|++
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 22477888888899999999999999999999
Q ss_pred HHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CH-
Q psy3174 122 MQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SE- 197 (265)
Q Consensus 122 ~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~p- 197 (265)
+++.+|+++-+.+..+.+.... |++++|...|+.+.+..|+++..+..+|.++.++|++++|..++++++.. +|
T Consensus 629 al~~~P~~~~a~~~la~~~~~~--g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 629 VLTREPGNADARLGLIEVDIAQ--GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9999999887777777775555 77999999999998888888888888999999999999999999999876 22
Q ss_pred -----HHHHHHHHHHHHcCCCCccC
Q psy3174 198 -----DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 198 -----dtl~nl~~~~~~~Gk~~ea~ 217 (265)
.++.+++.++...|++.++.
T Consensus 707 ~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 707 SMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHH
Confidence 24456778888888876543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-09 Score=104.69 Aligned_cols=122 Identities=10% Similarity=-0.026 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++.+....++.++...|++++|.+.|+++++.+|++.......+++.+.. |++++|...|+++.+..|..+.....+
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~--G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA--GQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 566666666666666666666676666666666666665544444444433 556666666666666666655444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD----SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea 216 (265)
+.++..+|++++|...+++++.. +|..+.+++.++..+|+.+++
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 55566666666666666666644 344556666666666665554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-09 Score=87.48 Aligned_cols=115 Identities=9% Similarity=-0.147 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+++..+.++.++...||++.|.+.|++++..+|++.-+....+.+.... |++++|...|+++....|.++..+.++|.
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML--KEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3445666788999999999999999999999999885555555444434 78999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
|+..+|++++|...+++++.. +|+...|.+.+...++
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999988 6777777777666543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-09 Score=109.78 Aligned_cols=200 Identities=11% Similarity=-0.071 Sum_probs=143.8
Q ss_pred HhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc--------CChHHHHHH------------H
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK--------LPEELSCIK------------V 76 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei--------~~~~l~~~~------------~ 76 (265)
..+-.|+|.+|+..+++....+|+. .+....+.++|..+|+++.++..+ .++....+. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4556799999999987665555543 234566689999999998776654 111111110 1
Q ss_pred HHHHhcCCCcCc-c--------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH-------
Q psy3174 77 LAEYLSIPSKNG-S--------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVH------- 140 (265)
Q Consensus 77 ~A~~l~~~~~~e-~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~------- 140 (265)
.+..+...++.+ + ...|++.+....++.+|...|++++|++.|+++++.+|++..+....+.+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 122122222221 1 335888999999999999999999999999999999998765433222221
Q ss_pred ---------------------------------HHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3174 141 ---------------------------------IANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWD 187 (265)
Q Consensus 141 ---------------------------------l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~ 187 (265)
+....+++++|...|+++....|+++.++..+|.++.++|++++|..
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 01234788999999999999999998888899999999999999999
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 188 LLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 188 ~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.++++++. +|+.+.+++.+....|++.++.
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999886 7778888887777788776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=85.22 Aligned_cols=119 Identities=9% Similarity=0.054 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDE--DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.+.......+.++..+|+++.|.+.+.++++..+ .........+.+.... |++++|...|+++....|..+..+..
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA--GDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 3445555666666666666666666666655321 1111111122222222 55666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
+|.++..+|++++|...++++++. +|+.+..++.+....|+..
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 666666666666666666666654 4555555555555555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-09 Score=87.72 Aligned_cols=122 Identities=7% Similarity=-0.027 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc--CCCHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY--GSTPMLVN 170 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~--p~t~~lLn 170 (265)
|++.+....++.++..+|+++.|.+.++++++.+|++.......+++.... |++++|...|+++.... |.....+.
T Consensus 62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (234)
T TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ--GKYEQAMQQFEQAIEDPLYPQPARSLE 139 (234)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhccccccchHHHH
Confidence 555566666666666666666666666666665555544333333333333 45666666666655432 23344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
.+|.++..+|++++|...+.++++. +++.+.+++.++...|+..++
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666666666666655 344555666666666655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-08 Score=103.45 Aligned_cols=197 Identities=18% Similarity=0.032 Sum_probs=139.7
Q ss_pred hhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHH
Q psy3174 18 SYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLE 97 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE 97 (265)
.+-.|+|.+|+..++++....+...--...++..+|+.+|+++.++.. ++ ..+.... .......+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~--------l~---~~l~~~p----~~~~~~~~ 311 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSI--------LT---ELFYHPE----TIADLSDE 311 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHH--------HH---HHhhcCC----CCCCCChH
Confidence 466788889998887766543211111345557788888888866652 12 1121110 01122356
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDH---------------TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---------------~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
....++.+++..||+++|.+.+.++.+..|+. .-..+..+.+.. ..|++++|...++++....
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~--~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK--YSNDLPQAEMRARELAYNA 389 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhC
Confidence 67777778899999999999999998876521 112222333333 3378999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHHHH
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSDET 229 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~~ 229 (265)
|..+.++..+|.++..+|++++|+..++++++. ++++...++.++..+|+..++. |++|.+..+...
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999998 5557888899999999887644 999988887665
Q ss_pred HH
Q psy3174 230 TA 231 (265)
Q Consensus 230 ~~ 231 (265)
..
T Consensus 470 ~~ 471 (765)
T PRK10049 470 RD 471 (765)
T ss_pred HH
Confidence 54
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-08 Score=105.66 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=132.1
Q ss_pred HhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH-HHHHHHHHHHhcCCCcCc-c
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE-LSCIKVLAEYLSIPSKNG-S 89 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~-l~~~~~~A~~l~~~~~~e-~ 89 (265)
...-.|+|.+|+..++++....|... ..+....+++..|+++.++..+ ..|. ......++.-+...++.+ +
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~p~~~--a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHDMSNE--DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 33468999999999876654433321 2344467889999988655443 2222 222112222221222221 1
Q ss_pred --------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 90 --------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 90 --------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
...|+ .+....++.++.++|++++|++.|+++++.+|++.......+++-... |++++|..+|+++...
T Consensus 596 l~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~--G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS--GDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHh
Confidence 22365 899999999999999999999999999999999998777777765544 7899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
+|+++.+++++|+++..+|++++|+..++++++.+|+
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999998543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-08 Score=88.03 Aligned_cols=105 Identities=14% Similarity=-0.020 Sum_probs=92.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH-HHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVH-IANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~-l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
..|++.+....++.+|..+||++.|...|+++.+.+|++.-.....|-+- ...|+..+.+|..+++++....|.++..+
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 34889999999999999999999999999999999999886666555542 22333337999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..+|.+++.+|+|++|...++++++.
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999998
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-08 Score=96.48 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=99.2
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CCCHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-GSTPMLV 169 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-p~t~~lL 169 (265)
..|++.+..+.++.++..+||+++|...++++++++|++.......+++.+.. |++++|...++++.... |+++..+
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~--g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH--TGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc--cCHHHHHHHHHHHHHhccccCHHHH
Confidence 35788999999999999999999999999999999999876555555554444 67999999999998775 6788889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGK 212 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk 212 (265)
..+|.++..+|+++||...+.+....+|+ ....++.++..+|+
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 99999999999999999999988776555 33455556666664
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-09 Score=81.58 Aligned_cols=105 Identities=17% Similarity=-0.011 Sum_probs=89.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++.+.+..++.+++..|+++.|...++++.+.+|+++-.....++..+.. +++.+|..+|+++....|.++..+..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML--KEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 4677888999999999999999999999999999888876655555555445 67999999999998889988888889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
+|.|++.+|++++|...++++++.+|+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999988555
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=102.62 Aligned_cols=125 Identities=9% Similarity=-0.021 Sum_probs=111.5
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.|+.+.+.+.+++.+....||+|+|+..+..+++.+||+.-.....+-+- ...+++++|...++++.+..|+++..++
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L--~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGV--KRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHH--HHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 57888999999999999999999999999999999999995544444442 2348999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+|.++.++|+++||..++++++.. +|+++.+++.++..+|+.+++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999976 5779999999999999988754
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.8e-09 Score=85.30 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=91.6
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 115 ALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
-+..++++++++|++. .. .+++... .|++++|...|+.+....|+++..++.+|.++.++|++++|...+.++++
T Consensus 12 ~~~~~~~al~~~p~~~-~~--~g~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPETV-YA--SGYASWQ--EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHHH-HH--HHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567899999999873 22 3455443 48899999999999999999999999999999999999999999999999
Q ss_pred C---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 195 D---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 195 ~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
. +|+++.|++.|+..+|+..++. |++|.....
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 8 7789999999999999998865 888765544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-08 Score=84.77 Aligned_cols=170 Identities=12% Similarity=0.138 Sum_probs=119.7
Q ss_pred chhHHH-HHhhhhccHHHHHHHHhhcccCChhhh--hhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCc
Q psy3174 10 DELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVL--LEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 10 delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~--~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~ 86 (265)
+.+|.. ...|-.|+|..++..++++....|+.. .+..+....+|..+|+++.++.. +-.++...
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~-----------~~~~l~~~-- 100 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAA-----------ADRFIRLH-- 100 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHH-----------HHHHHHHC--
Confidence 345655 566677999999999877666555432 23456667889999998876662 22222111
Q ss_pred CcccccCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHccCCCcHHHHHHH-----------------HHHHH
Q psy3174 87 NGSSNFGTHLEINALKIHTYLTM--------YRNDLALKELKVMQDKDEDHTLTQLCS-----------------AWVHI 141 (265)
Q Consensus 87 ~e~~~~~~~lE~~al~v~~~l~~--------~r~d~Aek~l~~~~~~~~d~~l~~la~-----------------a~v~l 141 (265)
.+.+...+.++.++.++... |+++.|.+.++++++..|++.....+. +.+.+
T Consensus 101 ---p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 177 (235)
T TIGR03302 101 ---PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYL 177 (235)
T ss_pred ---cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233345788888888876 789999999999999999986543222 22222
Q ss_pred HhccccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 142 ANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
..|++.+|...|+++...+|.+ +.++..+|.++..+|++++|.++++.....+|
T Consensus 178 --~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 178 --KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3378999999999999888754 46888999999999999999998776654444
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-08 Score=96.16 Aligned_cols=206 Identities=14% Similarity=0.030 Sum_probs=142.0
Q ss_pred hhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-------------CChHHHHHHH-HHHHhcCC
Q psy3174 19 YYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-------------LPEELSCIKV-LAEYLSIP 84 (265)
Q Consensus 19 fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-------------~~~~l~~~~~-~A~~l~~~ 84 (265)
.+.+.+..+.-..+.+...+|. ......++...|..+|+|+.++.-. .+|.+..+.. +|.++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~P~-~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~ 254 (508)
T KOG1840|consen 176 SIEGTLKGLDIQAKGLGDEDPE-RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL 254 (508)
T ss_pred cchhhHHHHHHHHHhcccCCch-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh
Confidence 3455554444444434444444 4556666888999999998544322 4777666444 78777665
Q ss_pred CcC-cc----------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-------CCCcHHHHHHHHHHH
Q psy3174 85 SKN-GS----------------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK-------DEDHTLTQLCSAWVH 140 (265)
Q Consensus 85 ~~~-e~----------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~-------~~d~~l~~la~a~v~ 140 (265)
++. ++ .++|.....+..++..|...||+++|+..++++.++ .++.+-.++.+...
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~- 333 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA- 333 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH-
Confidence 543 22 235666666777788999999999999999999885 33444444444222
Q ss_pred HHhccccHHHHHHHHHHHHh--------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHH---HHH
Q psy3174 141 IANNVDKLNEAFYTLQDLID--------KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SED---TLI 201 (265)
Q Consensus 141 l~~g~~~~~eA~~~~~el~~--------~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pd---tl~ 201 (265)
+....+++++|..+++.... .+|..+...+.+|+++..+|+|.||++++++|+.+ ++. .+.
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 22445889999999998643 23346678999999999999999999999999986 444 567
Q ss_pred HHHHHHHHcCCCCccC--------------CCChhhhcH
Q psy3174 202 NNMVTAGRLGKGNEMS--------------VSPPFLFRS 226 (265)
Q Consensus 202 nl~~~~~~~Gk~~ea~--------------p~hp~~~~~ 226 (265)
|++..+..+++..++. |+||.+...
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 8888887777766543 999877654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-09 Score=94.59 Aligned_cols=207 Identities=15% Similarity=0.121 Sum_probs=95.4
Q ss_pred HHHhhhhccHHHHHHHH-hhcccC-ChhhhhhHHHHHHHHH--HcccChhHHhhhc-----CCh-HHHHHHHHHHHhcCC
Q psy3174 15 VRNSYYLGNYQQCIKEG-QRLKAT-DPKVLLEKDFYVCRSY--LAQKKYKVVLEEK-----LPE-ELSCIKVLAEYLSIP 84 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~-~~~~~~-~~~~~~e~~~~~~Ray--lalg~~~~~l~ei-----~~~-~l~~~~~~A~~l~~~ 84 (265)
.+-.|=.|+|++|++-+ +.+... +|++. .+|..++. ..+++++.++.-. .++ ....+..++.++...
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~---~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDP---EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45667789999999987 333333 23322 55554444 3455665443322 222 233444455553322
Q ss_pred CcCcc-----c--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHhccccHHHHHHHH
Q psy3174 85 SKNGS-----S--NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD--EDHTLTQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 85 ~~~e~-----~--~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~--~d~~l~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
...++ . +...++..+...++++...++++.+...+.++.+.. ++++......|.+.... |++++|...|
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~--G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL--GDPDKALRDY 169 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC--CHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 22222 0 113456777778889999999999999999987654 56665555556665544 7899999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 156 QDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 156 ~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
+++....|+++.+++.++++++.+|++++|..++...... +|.....++.++..+|++.+++ |++|.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9999999999999999999999999999988888777665 7889999999999999998876 87776
Q ss_pred hhcH
Q psy3174 223 LFRS 226 (265)
Q Consensus 223 ~~~~ 226 (265)
+...
T Consensus 250 ~~~~ 253 (280)
T PF13429_consen 250 WLLA 253 (280)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-08 Score=99.10 Aligned_cols=171 Identities=12% Similarity=-0.055 Sum_probs=131.2
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhh---hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC-CCcCc--
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKV---LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI-PSKNG-- 88 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~---~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~-~~~~e-- 88 (265)
..-+++.|++.+|+..++++...+|.. ..+...-++.+++.+|+++.++..+ -..... +....
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l-----------~~~~~~~P~~~~~~ 347 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT-----------AHTINNSPPFLRLY 347 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH-----------HHHhhcCCceEeec
Confidence 446788999999999976654444332 2344445567789999998766632 111111 11100
Q ss_pred --ccccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC
Q psy3174 89 --SSNFGT--HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 89 --~~~~~~--~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~ 164 (265)
....|+ .++...+.++++...|++++|++.++++++..|+++-..+..+.+.... |++++|+..++++....|+
T Consensus 348 ~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~--g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 348 GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR--GWPRAAENELKKAEVLEPR 425 (765)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCC
Confidence 022343 3678889999999999999999999999999999987777777765555 7899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
++.++..+|.+++.+|+|++|+.+++++++.+|+
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998555
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-08 Score=95.51 Aligned_cols=118 Identities=18% Similarity=0.046 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
|.-+.+...++-+|-.++++|.|...|.+++...|.+. .++-|++ ..+|.++-|+..|++..+..|..+..+
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-----~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay 323 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-----VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY 323 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-----hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence 56666666666666666666666666666666555544 2222222 223344444444444444444444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
|++|.++-..|+..||+.++.+||.. |||.+.||++++..+|+.++
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH
Confidence 44444444444444444444444444 44444444444444444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=82.99 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=92.8
Q ss_pred ccc-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCC
Q psy3174 90 SNF-GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 90 ~~~-~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t 165 (265)
+-. ++++|.++..+.-+...||++.|++.|+-....||.+. ..|.+|+ +..+++.+|+..|.......|++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~-----~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF-----DYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344 78999999999999999999999999999999999999 6677766 44489999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 166 PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
|...-+.|+|++..|+.++|...++.|++.
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=97.56 Aligned_cols=167 Identities=11% Similarity=0.007 Sum_probs=121.2
Q ss_pred HHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCccc---------ccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy3174 53 YLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGSS---------NFGTHLEINALKIHTYLTMYRNDLALK 117 (265)
Q Consensus 53 ylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~~---------~~~~~lE~~al~v~~~l~~~r~d~Aek 117 (265)
|..+|..+.+|.-- +|--..+..-+|.-+...++..++ --|.....++.++-||..+|.++.|..
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 45555555554432 222244555566666665554221 127777888888889999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 118 ELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 118 ~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
.|+++++..|+-. .+..||+ +.+|++++|..-|+|...-.|.....++++|+++-.+|+..+|...+.+|+.
T Consensus 376 ly~~al~v~p~~a-----aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 376 LYLKALEVFPEFA-----AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHhhChhhh-----hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 9999988877644 3333333 4568899999999999888888888899999999999999999999999988
Q ss_pred CCH---HHHHHHHHHHHHcCCCCccC----------CCChhhh
Q psy3174 195 DSE---DTLINNMVTAGRLGKGNEMS----------VSPPFLF 224 (265)
Q Consensus 195 ~~p---dtl~nl~~~~~~~Gk~~ea~----------p~hp~~~ 224 (265)
.+| |...||++++.-.|.-++++ |+-|.+-
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 855 47789999998888887765 7777543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-08 Score=78.10 Aligned_cols=99 Identities=17% Similarity=0.061 Sum_probs=88.3
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-
Q psy3174 117 KELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD- 195 (265)
Q Consensus 117 k~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~- 195 (265)
..|+++++.+|++.......++..+.. +++++|...|+++.+..|+++..+..+|.++..+|++++|..++.+++..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357889999999987777777776656 78999999999999999999999999999999999999999999999988
Q ss_pred --CHHHHHHHHHHHHHcCCCCccC
Q psy3174 196 --SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 --~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+|++..+++.++..+|+..++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHH
Confidence 6778999999999999987653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.7e-08 Score=67.84 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
+...++.++..+|+++.|.+.++++.+..|++.......+.+.... +++++|...|++.....|..+..+..+|.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--GKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 4667888999999999999999999999988865555555554444 78999999999999999988889999999999
Q ss_pred HcCCHHHHHHHHHHHhcCCH
Q psy3174 178 AQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~~p 197 (265)
.+|++++|...+.+++..+|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999987654
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=95.38 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=142.7
Q ss_pred ccCCcchhHHHHH-hhhhccHHHHHHHHhhcccCC--hhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH--HHHH
Q psy3174 5 ADNEVDELFDVRN-SYYLGNYQQCIKEGQRLKATD--PKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE--LSCI 74 (265)
Q Consensus 5 ~~~~~delf~vr~-~fy~G~Y~~~i~~~~~~~~~~--~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~--l~~~ 74 (265)
....|+-|-.+-| .|+-|+|+.|...+...-..+ ....-+--+++.|+|-++|+|+.+..-. ..+. +.+.
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 3456777777755 556899999999865443322 2223444677899999999998654322 1111 2222
Q ss_pred HHHHH-HhcCCCcCcc--------cccCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q psy3174 75 KVLAE-YLSIPSKNGS--------SNFGTHLEINALKIHTYLTMY----RNDLALKELKVMQDKDEDHTLTQLCSAWVHI 141 (265)
Q Consensus 75 ~~~A~-~l~~~~~~e~--------~~~~~~lE~~al~v~~~l~~~----r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l 141 (265)
-.+++ |+....-..+ ..+|++.|.+.+++.+|..-+ ..|.|...+.++++..|+++ .+|+.+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~-----~a~l~l 420 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS-----EAWLEL 420 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH-----HHHHHH
Confidence 22222 2222211111 345999999999999999875 67999999999999999988 777777
Q ss_pred H--hccccHHHHHHHHHHHHh---h--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHH--------HH
Q psy3174 142 A--NNVDKLNEAFYTLQDLID---K--YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDT--------LI 201 (265)
Q Consensus 142 ~--~g~~~~~eA~~~~~el~~---~--~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdt--------l~ 201 (265)
+ .-++++..++-.|..+.+ . .+--|..||++|+.|+..|.+++|...+.+|+.+ ++|- .+
T Consensus 421 aql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 421 AQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 6 122444444666655432 1 2235679999999999999999999999999986 4542 68
Q ss_pred HHHHHHHHcCCCCcc
Q psy3174 202 NNMVTAGRLGKGNEM 216 (265)
Q Consensus 202 nl~~~~~~~Gk~~ea 216 (265)
|++.|...+++...+
T Consensus 501 Nlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHhhhhhhHH
Confidence 999999999987654
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-07 Score=89.03 Aligned_cols=201 Identities=15% Similarity=0.047 Sum_probs=140.7
Q ss_pred HHHhhhhccHHHHHHHHhh-cc---cCChhh--hhhH-HHHHHHHHHcccChhHHhhhc-------------CChHHHH-
Q psy3174 15 VRNSYYLGNYQQCIKEGQR-LK---ATDPKV--LLEK-DFYVCRSYLAQKKYKVVLEEK-------------LPEELSC- 73 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~-~~---~~~~~~--~~e~-~~~~~Raylalg~~~~~l~ei-------------~~~~l~~- 73 (265)
...++-.|.|.+|+.-++. +. ..++.. .+.. .-..+..|..++++..++.-. .||....
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4678889999998877422 11 122211 1111 223578899999997443222 6777554
Q ss_pred HHHHHHHhcCCCcC-cc----------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-----CCCcH-
Q psy3174 74 IKVLAEYLSIPSKN-GS----------------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK-----DEDHT- 130 (265)
Q Consensus 74 ~~~~A~~l~~~~~~-e~----------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~-----~~d~~- 130 (265)
+--+|..+-..++. ++ ..++.-...+...+.++..+|++++|.+.+++.+++ +++++
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 44466555444432 22 123555566777888999999999999999999884 66773
Q ss_pred HH--HHHHHHHHHHhccccHHHHHHHHHHHHhhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----
Q psy3174 131 LT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKY--------GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----- 195 (265)
Q Consensus 131 l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~--------p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----- 195 (265)
+. .--++|+...+ |+++||+.+|+++.+.. +.+...+|.+|..+.+.+++.+|..++.++..+
T Consensus 366 ~a~~~~nl~~l~~~~--gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 366 LAKIYANLAELYLKM--GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred HHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 22 12224555555 78999999999987542 345668999999999999999999999999876
Q ss_pred --CHHH---HHHHHHHHHHcCCCCccC
Q psy3174 196 --SEDT---LINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 --~pdt---l~nl~~~~~~~Gk~~ea~ 217 (265)
+|++ +.||+.++..+|+.+++.
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 8884 469999999999987654
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-08 Score=95.66 Aligned_cols=209 Identities=13% Similarity=0.080 Sum_probs=113.1
Q ss_pred CcchhHHHHHhhhhcc-------HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHh---hhc---CChHHHHH
Q psy3174 8 EVDELFDVRNSYYLGN-------YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL---EEK---LPEELSCI 74 (265)
Q Consensus 8 ~~delf~vr~~fy~G~-------Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l---~ei---~~~~l~~~ 74 (265)
+.++|+++...|-.|- .++|+..++++..--++.. =...-+.|+|-.+++|+.+. +.+ ++-.+..+
T Consensus 312 ~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 312 DASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 3567888877776664 3455555555433111111 01233468888888887433 333 33334444
Q ss_pred HHHHHHhc-CCCcCcc--------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH-------------
Q psy3174 75 KVLAEYLS-IPSKNGS--------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT------------- 132 (265)
Q Consensus 75 ~~~A~~l~-~~~~~e~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~------------- 132 (265)
..+..-|= -++..+- +.-+.++|.+...+-||-.++++|.|.|.+++++++||...=+
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE 470 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH
Confidence 44443221 1111110 2347788888888888888888888888888888877743211
Q ss_pred ----------------HHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3174 133 ----------------QLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 133 ----------------~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al 193 (265)
.--.||.++. ..+++++.|.-.|+++.+..|.+..++-..+.++.+.|+.++|..++.+|+
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 1113444443 223555555555555555555555555555555555555555555555555
Q ss_pred cC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 194 GD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 194 ~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
-+ +|-..++.+.++.-+|+..+++
T Consensus 551 ~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred hcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 44 4445555555555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.9e-07 Score=77.69 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
.....+-..++++..|+++.++.. +..+.. .. ...+...+..+.++.++..+|+++.|...|++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~--------~~~~~~---~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKY--------FEALES---RY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHH---hC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 334455557788999998876662 221111 10 01122336778899999999999999999999
Q ss_pred HHccCCCcHH-----HHHHHHHHHHH----hccccHHHHHHHHHHHHhhcCCCHHH---H--------------HHHHHH
Q psy3174 122 MQDKDEDHTL-----TQLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYGSTPML---V--------------NAQVAV 175 (265)
Q Consensus 122 ~~~~~~d~~l-----~~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p~t~~l---L--------------n~~A~~ 175 (265)
+++..|++.. ..++.++.... ...+++++|...|+++...+|+++.. + ..+|.+
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887664 23333333220 01267999999999999999986543 1 256888
Q ss_pred HHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCcc
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++.+|++.+|...++++++. .++.+.+++.++..+|+..++
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999987 246889999999999987653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=71.37 Aligned_cols=101 Identities=15% Similarity=0.017 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLV 169 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lL 169 (265)
++..+..+..+...|+++.|.+.+.++.+..|++.. ..+..+.+.. ..+++++|...|+++...+|.+ +.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY--AQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 466788999999999999999999999998887642 2222333333 3478999999999999988863 6688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
..+|.++.++|++++|...+.++++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999998665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.8e-08 Score=89.95 Aligned_cols=176 Identities=10% Similarity=0.010 Sum_probs=135.4
Q ss_pred HHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHH
Q psy3174 49 VCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDL 114 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~ 114 (265)
+.|||+++|.+..+-..+ ..|....+.+++..+..-+.-+. +.+|.+.-.+.-.+.|+..|+..+.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 479999999886443333 33334455556655443222111 5678888889999999999999999
Q ss_pred HHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 115 ALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
|.+.|+.+++.++.++-.. ++..|. -+++++=|..+|+.+.+..-.+|.+.+++|.|.+.-+.++-+...+++|
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yf----Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYF----YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccc----cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 9999999999998876322 222222 2388999999999999998899999999999999999999999999999
Q ss_pred hcC------CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHHH
Q psy3174 193 AGD------SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSDE 228 (265)
Q Consensus 193 l~~------~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~ 228 (265)
+.. -.|++.|++.+...-|+..-+. |+|.-..+...
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 987 4568889999988888865432 88877666544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-06 Score=89.76 Aligned_cols=190 Identities=16% Similarity=0.025 Sum_probs=127.8
Q ss_pred hccHHHHHHHHhhcccC---ChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHH
Q psy3174 21 LGNYQQCIKEGQRLKAT---DPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLE 97 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~---~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE 97 (265)
.|.|.++|++++.+... -|+.. ..+++=+|+++++++.++. ++.+.+...+. ....+.+++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~---~~a~adayl~~~~P~kA~~-----------l~~~~~~~~~~--~~~~~~~~~ 368 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYA---RRWAASAYIDRRLPEKAAP-----------ILSSLYYSDGK--TFRNSDDLL 368 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHH---HHHHHHHHHhcCCcHHHHH-----------HHHHHhhcccc--ccCCCcchH
Confidence 56778888877666632 24442 4555677788777765443 22222222211 012244555
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCC---------------CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDE---------------DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~---------------d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
...-+...|+..+|+++|...+.++.+..| |-.-.+...+-+.+.. |++.+|...++++....
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~--gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL--NDLPTAQKKLEDLSSTA 446 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhC
Confidence 456667788889999999998888877322 2222222233332333 67889999999998888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC----------CCChhhhcHHH
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS----------VSPPFLFRSDE 228 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~ 228 (265)
|.++.+++.+|.+++.+|++.+|+..++.++..+|+ +.++++.++..+|++.++. |+|+-++++..
T Consensus 447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 447 PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 988888888999999999999999998877777444 6788888888888876542 99998887664
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=7e-07 Score=85.18 Aligned_cols=159 Identities=12% Similarity=0.158 Sum_probs=122.3
Q ss_pred HHHHHHHHcccChhH--------------Hhhhc-CChHHHHHHHHHHHhcCCCcCcc--------cccCCCHHHHHHHH
Q psy3174 47 FYVCRSYLAQKKYKV--------------VLEEK-LPEELSCIKVLAEYLSIPSKNGS--------SNFGTHLEINALKI 103 (265)
Q Consensus 47 ~~~~Raylalg~~~~--------------~l~ei-~~~~l~~~~~~A~~l~~~~~~e~--------~~~~~~lE~~al~v 103 (265)
.+++++++-.|-+.. +|+-- ..+.+ .+++-+.|+....+.+. +-.|.++...+-++
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 666777776665532 22211 12222 45656666654433211 33589999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
|+++..+++++|.+.|.+++.++|.++..++=.++....+ ++++++...|+|...+||..+...|-.|-++.-|++|+
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~--~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ--HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHH
Confidence 9999999999999999999999999998766665554444 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---------CHHHHHHHHHHHH
Q psy3174 184 EAWDLLQDTAGD---------SEDTLINNMVTAG 208 (265)
Q Consensus 184 EAe~~l~~al~~---------~pdtl~nl~~~~~ 208 (265)
.|.+.+..|.++ ++..++|.+.+..
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 999999999987 5557777755433
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=92.72 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=147.0
Q ss_pred hHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHH----------HHHHHcccChhHHhhhcCChHHHHHHHHHHH
Q psy3174 12 LFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYV----------CRSYLAQKKYKVVLEEKLPEELSCIKVLAEY 80 (265)
Q Consensus 12 lf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~----------~Raylalg~~~~~l~ei~~~~l~~~~~~A~~ 80 (265)
|-++ |.+|=++.|.+|.+.++.+....|--.---++|. .-+||+++-.+ . ++.....|..++.+
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~----~-~~~sPesWca~GNc 430 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID----T-DPNSPESWCALGNC 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh----h-CCCCcHHHHHhcch
Confidence 3344 7889999999999998777665553211122221 13344432221 1 23334567777766
Q ss_pred hcCCCcCcc-------------------------------------------cccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy3174 81 LSIPSKNGS-------------------------------------------SNFGTHLEINALKIHTYLTMYRNDLALK 117 (265)
Q Consensus 81 l~~~~~~e~-------------------------------------------~~~~~~lE~~al~v~~~l~~~r~d~Aek 117 (265)
++-+++-+. .-.|.+.-+++=+++||+++++++.|+-
T Consensus 431 fSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHH
Confidence 654433211 1128899999999999999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 118 ELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 118 ~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.|+++++++|-+.+..-..+-+.-.. ++.++|+.+|+++.-..|.++......|.++...++++||...|++.-+.-|
T Consensus 511 ~fqkA~~INP~nsvi~~~~g~~~~~~--k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 511 HFQKAVEINPSNSVILCHIGRIQHQL--KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHhhhcCCccchhHHhhhhHHHHHh--hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 99999999999875544444443333 7899999999999999999999999999999999999999999999888733
Q ss_pred H---HHHHHHHHHHHcCCCCccC
Q psy3174 198 D---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 198 d---tl~nl~~~~~~~Gk~~ea~ 217 (265)
+ +++-++.++-.+|+...+.
T Consensus 589 ~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 589 QESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred chHHHHHHHHHHHHHHccchHHH
Confidence 3 7788899999999987765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-07 Score=84.38 Aligned_cols=118 Identities=10% Similarity=-0.073 Sum_probs=60.0
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++++....++.++..+|+++.|...|.++++++|++..+....+.+... .|++++|...|++..+..|+++....
T Consensus 94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~--~g~~~eA~~~~~~al~~~P~~~~~~~- 170 (296)
T PRK11189 94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY--GGRYELAQDDLLAFYQDDPNDPYRAL- 170 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHH-
Confidence 356666666666666666666666666666666666655333322222221 25566666666666666665543111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk~ 213 (265)
...+....+++++|...+.++... +|+... .+.+...+|+.
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~ 212 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKI 212 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCC
Confidence 111233455566666666555443 444332 23444445554
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=81.02 Aligned_cols=180 Identities=13% Similarity=0.123 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHcccChhHHhhhc------CChH-HHHHHHHHHHhcCCCcCcc--------cccCCCHHHHHHHHHHHHH
Q psy3174 44 EKDFYVCRSYLAQKKYKVVLEEK------LPEE-LSCIKVLAEYLSIPSKNGS--------SNFGTHLEINALKIHTYLT 108 (265)
Q Consensus 44 e~~~~~~Raylalg~~~~~l~ei------~~~~-l~~~~~~A~~l~~~~~~e~--------~~~~~~lE~~al~v~~~l~ 108 (265)
++.+-.-...++.|++..++... .+.. ...++.-..||.....+.. +.-|+..-+..-++.++++
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 33444446667777776655544 2333 3346667777776655433 3348888889999999999
Q ss_pred cCChHHHHHHHHHHHccCCCcHHHH--------HHHHHHHH-----HhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 109 MYRNDLALKELKVMQDKDEDHTLTQ--------LCSAWVHI-----ANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~d~~l~~--------la~a~v~l-----~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
+|.++.|+..|+.+++-+|.+-+.+ .-+-|+-. +.|+|..+.|+.+...+.+..||+..+.-..|-|
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 9999999999999998777432222 12223211 1467899999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhh
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFL 223 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~ 223 (265)
++..|+...|...++.+-.+ +.++++-...++...|...+.+ |+|..+
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 99999999999999999776 8889999999999999877654 988643
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.3e-07 Score=87.11 Aligned_cols=210 Identities=16% Similarity=0.030 Sum_probs=153.9
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhh---hc--CChH-HHHHHHHHHHhcCCCcC-c
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLE---EK--LPEE-LSCIKVLAEYLSIPSKN-G 88 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~---ei--~~~~-l~~~~~~A~~l~~~~~~-e 88 (265)
-..||-+.|++|......+-..+|-. .+...+..-++..+|+...... .+ ..|. ...+-.++.|+-+-++. +
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh-~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFH-LPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCC-cchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHH
Confidence 45789999999999865555555432 2333333447888888653221 11 2222 33455566665433322 1
Q ss_pred c----------------------------c--------------ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 89 S----------------------------S--------------NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 89 ~----------------------------~--------------~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
+ + ..+++-.-...+++=|.++|.+.+|++-|.++..+.
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 1 0 127777777788889999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C
Q psy3174 127 EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-------GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---S 196 (265)
Q Consensus 127 ~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-------p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~ 196 (265)
|.+++..-=++-|.... +.|.+|..+|+...+.- +-...++|++|-++.++++++||...++++|.+ +
T Consensus 411 P~Dplv~~Elgvvay~~--~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTY--EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred CCcchhhhhhhheeehH--hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 99998776666665545 67999999999986322 113347899999999999999999999999988 9
Q ss_pred HHHHHHHHHHHHHcCCCCccC----------CCChhhhcHHH
Q psy3174 197 EDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSDE 228 (265)
Q Consensus 197 pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~ 228 (265)
+++....+.++.++|+.+.|+ |++.++..++.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999999998765 99888777754
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.1e-07 Score=83.17 Aligned_cols=110 Identities=14% Similarity=-0.020 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+...+..++..|+++.|...|+++++.+|++.......+.+.+.. |++++|+..++++.+..|..+..+..+|.+++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~--g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL--GNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 345577889999999999999999999999876555555554444 789999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 179 QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
+|+|++|...++++++. ++++...+..|...+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998 677777777776555
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.1e-07 Score=89.45 Aligned_cols=123 Identities=12% Similarity=-0.021 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q psy3174 71 LSCIKVLAEYLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHI 141 (265)
Q Consensus 71 l~~~~~~A~~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l 141 (265)
..+..++|+.....+..+. .-.|++..+....+.++.+.+|+|+|...+++++..+||+...+...|-.-.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 4567777777766665543 2359999999999999999999999999999999999999766544433322
Q ss_pred HhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 142 ANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.. |++++|+.+|+++...+|+++..+.++|.+++..|+.++|...+++|++.
T Consensus 166 ~~--g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 166 EI--GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred Hh--cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 78999999999999999999999999999999999999999999999987
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.9e-07 Score=76.28 Aligned_cols=104 Identities=11% Similarity=0.114 Sum_probs=88.1
Q ss_pred cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHcCC--H
Q psy3174 109 MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL-IAQDK--Y 182 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~-~~~g~--~ 182 (265)
.++.+.+...+++.++.+|++. .+|..++ ...+++++|...|+++....|+++.++.++|.++ ...|+ +
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~-----~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS-----EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 5667888888889999999998 5555553 2348899999999999999999999999999985 67788 5
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 183 EEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 183 eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
++|..+++++++. +++++++++.++..+|+..++.
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998 7779999999999999987654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.3e-06 Score=75.53 Aligned_cols=164 Identities=15% Similarity=0.050 Sum_probs=114.1
Q ss_pred HHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCC
Q psy3174 47 FYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYR 111 (265)
Q Consensus 47 ~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r 111 (265)
+.....|..+|+++.++..+ .+....+...++.++...++.+. ...|++......++.++..+||
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33345577777776555433 23334555556665555444332 2348889999999999999999
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 112 NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
+++|.+.++++++.+|++.. ...|..+....+++++|...|++.....+.... +.+.+++.+|++.++. .+..
T Consensus 148 ~~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~---~~~~~~~~lg~~~~~~-~~~~ 220 (296)
T PRK11189 148 YELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQRYEKLDKEQW---GWNIVEFYLGKISEET-LMER 220 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHHHhhCCcccc---HHHHHHHHccCCCHHH-HHHH
Confidence 99999999999999999873 235666665667899999999887655432221 2456777888887653 4444
Q ss_pred Hh---cC-------CHHHHHHHHHHHHHcCCCCccC
Q psy3174 192 TA---GD-------SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 192 al---~~-------~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+. +. ++++.++++.++..+|+..++.
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 43 22 4467899999999999988765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-06 Score=76.98 Aligned_cols=126 Identities=13% Similarity=0.011 Sum_probs=110.5
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
..++...++..-.+......|++.+|...++++...+|++.-+...++....-. |+..+|-.-|.+..+..|..|..+
T Consensus 94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~--Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL--GRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc--cChhHHHHHHHHHHHhccCCchhh
Confidence 346888899988999999999999999999999999999986555555553333 889999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|++|..++..|+++.|+.++..+... ++-+..|++.+.-.+|+..++.
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 99999999999999999999999876 6668889999999999987654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7e-07 Score=78.11 Aligned_cols=121 Identities=13% Similarity=0.160 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHhccccHHHHHHHHHHHHhh--cCCCHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT-LTQLCSAWVHIANNVDKLNEAFYTLQDLIDK--YGSTPMLV 169 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~-l~~la~a~v~l~~g~~~~~eA~~~~~el~~~--~p~t~~lL 169 (265)
|++.-....++.+|-+.|..|.|.+.|++++.++|++- +.+.-.+|+ ..+ |++++|...|++.... +|.-+..+
T Consensus 66 Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL-C~q--g~~~eA~q~F~~Al~~P~Y~~~s~t~ 142 (250)
T COG3063 66 PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL-CAQ--GRPEEAMQQFERALADPAYGEPSDTL 142 (250)
T ss_pred cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH-HhC--CChHHHHHHHHHHHhCCCCCCcchhh
Confidence 67788899999999999999999999999999999874 334444444 555 6999999999999865 56666688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcc
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDS---EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~---pdtl~nl~~~~~~~Gk~~ea 216 (265)
-++++|.+++|+++.|+.+++++++.+ |-++.-++.....-|+...+
T Consensus 143 eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 143 ENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 899999999999999999999999994 44666666666666665443
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-06 Score=79.88 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=89.7
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC------cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED------HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d------~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
.++|..+|+..+.++|+..++++|.|.+.|..++++.|+ ++...+.-+.+ +.+=.+++..|..+.++..+..|
T Consensus 456 kkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 456 KKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDP 534 (606)
T ss_pred HhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCc
Confidence 468999999999999999999999999999999999998 33333333322 11222889999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..-...-++|...+|+|+.+||.++++++...
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 98889999999999999999999999999876
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-06 Score=80.46 Aligned_cols=226 Identities=13% Similarity=0.061 Sum_probs=141.7
Q ss_pred HhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChHHH-HHH-HHHHHhcCCCcCcc
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEELS-CIK-VLAEYLSIPSKNGS 89 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~-~~~-~~A~~l~~~~~~e~ 89 (265)
-.+..|+|+++.+...+....++. ..-.....+++-..+|+++....-+ .+|... +.. ..+++....++.+.
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 345569999998776443322211 1122344467778888887554433 233322 222 22555444444332
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC--cHHHHHH-HHHHHHH---hccccHHHHHHH
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED--HTLTQLC-SAWVHIA---NNVDKLNEAFYT 154 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d--~~l~~la-~a~v~l~---~g~~~~~eA~~~ 154 (265)
...|++++...+.+.+|+..|+++.|.+.+.++.+.... .....+- .+|+.+. .+....+....+
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456999999999999999999999999999888875443 2222222 3454433 222344556666
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 155 LQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 155 ~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
.+++....|+++.+....|..+...|+.++|+..++++++. ||+...-.+.+ ..|++.++. |++|.
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHH
Confidence 66666777888999999999999999999999999999988 55433222222 235544433 88876
Q ss_pred hhcH----HHHHHHHHHHHhhccccCC
Q psy3174 223 LFRS----DETTATLDACGLQSNSEST 245 (265)
Q Consensus 223 ~~~~----~~~~~~FD~~~~~~~~~~~ 245 (265)
+.-. .-....|++..+.|...+.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5432 3355557777777765543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-06 Score=76.82 Aligned_cols=124 Identities=15% Similarity=-0.027 Sum_probs=107.2
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|+.++. +...-.+...|+-|.+-....+...-.+.+.-...+.+-..+.. |++.+|...|+++....|.+...+|
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~--g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--GNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHh--cchHHHHHHHHHHhccCCCChhhhh
Confidence 34667777 88888999999999999988888777777765444455555545 7899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+|+++++.|++++|...+.++++. +|..+.|++..+...|+..++.
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 9999999999999999999999998 8889999999999999987653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-06 Score=69.64 Aligned_cols=119 Identities=8% Similarity=0.026 Sum_probs=91.2
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
.+......+.++.++...|++++|...++++++..++.. ......+.+. ...|++++|...|++..+.+|..+..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIY--ASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 356778899999999999999999999999998766532 2222222222 23488999999999999999999999
Q ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q psy3174 169 VNAQVAVLIAQDK--------------YEEAWDLLQDTAGDSEDTLINNMVTAGRLGK 212 (265)
Q Consensus 169 Ln~~A~~~~~~g~--------------~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk 212 (265)
+..+|.++..+|+ +++|.+++++++..+|+.....+..+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 9999999999988 5777777777777777765445445555554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-05 Score=73.91 Aligned_cols=106 Identities=10% Similarity=0.050 Sum_probs=87.9
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH---
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP--- 166 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~--- 166 (265)
..++.........+.++..+|+++.|++.++++++.+|++.......+.+.... |++++|..++++.....|..+
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~--g~~~eA~~~l~~~l~~~~~~~~~~ 185 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ--GRFKEGIAFMESWRDTWDCSSMLR 185 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--CCHHHHHHHHHhhhhccCCCcchh
Confidence 345788888889999999999999999999999999999976666666665444 889999999999988776322
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 167 -MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 167 -~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
..+..+|.++..+|++++|..++.++...+|
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 2345799999999999999999999976633
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=82.16 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=107.6
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV---DKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~---~~~~eA~~~~~el~~~~p~t~~l 168 (265)
.|+.+-+..+.++=|..|.+...|..-|+++++++|-+- -||.+|.+.= +-.-=|.++|++....-|+++-+
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy-----RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRl 434 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY-----RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRL 434 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH-----HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHH
Confidence 489999999999999999999999999999999999888 7999885321 33445999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+..+|-||.+.++.+||...+.+|+.. +.+.+.-++-++..++...++.
T Consensus 435 w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 435 WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999987 5578889999999998877653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-06 Score=69.07 Aligned_cols=116 Identities=10% Similarity=-0.047 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
..++....+.++..+|+++.|...+++++.+.+++.. +....+.+.. ..|++++|...|++.....|.....++.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--SNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 4677888999999999999999999999988766431 2222233333 3388999999999999999988888999
Q ss_pred HHHHHH-------HcCCHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHcCC
Q psy3174 172 QVAVLI-------AQDKYEEAWDLLQDT-------AGDSEDTLINNMVTAGRLGK 212 (265)
Q Consensus 172 ~A~~~~-------~~g~~eEAe~~l~~a-------l~~~pdtl~nl~~~~~~~Gk 212 (265)
+|.++. .+|++++|...+.++ +..+|+..-.........|+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 999999 888888666666555 44466433333333334443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.9e-06 Score=79.01 Aligned_cols=177 Identities=13% Similarity=0.004 Sum_probs=120.9
Q ss_pred HHhhhhccHHHHHHHHhhcc---cCChhhhhhHHHHHHHHHHcccChhH---Hhhhc--CCh-----HHHHHHHHHHHhc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLK---ATDPKVLLEKDFYVCRSYLAQKKYKV---VLEEK--LPE-----ELSCIKVLAEYLS 82 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~---~~~~~~~~e~~~~~~Raylalg~~~~---~l~ei--~~~-----~l~~~~~~A~~l~ 82 (265)
.-+.-.|+|+.++...+.+. ..+++.........+..++..+..+. .+... ..| .......++..+.
T Consensus 195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 195 EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI 274 (409)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence 44566899998888765554 33444433333344444565544321 22222 233 3455555666665
Q ss_pred CCCcCcc---------cccCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHccCCCcH--HHHHHHHHHHHHhccccHH
Q psy3174 83 IPSKNGS---------SNFGTHLEIN--ALKIHTYLTMYRNDLALKELKVMQDKDEDHT--LTQLCSAWVHIANNVDKLN 149 (265)
Q Consensus 83 ~~~~~e~---------~~~~~~lE~~--al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~--l~~la~a~v~l~~g~~~~~ 149 (265)
..+..+. .+.|++.... .+.....+.-++.+.+.+.+++.++..|+++ -..++.+|+.+.. ++++
T Consensus 275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~--~~~~ 352 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH--GEFI 352 (409)
T ss_pred HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc--ccHH
Confidence 5554432 3456665432 3333444556889999999999999999999 8888999998766 7899
Q ss_pred HHHHHHH--HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 150 EAFYTLQ--DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 150 eA~~~~~--el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+|...|+ ...+..|+... ...+|.++.++|+.++|..++++++..
T Consensus 353 ~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999 46677886655 448999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.7e-06 Score=78.12 Aligned_cols=119 Identities=10% Similarity=-0.090 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN--VDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g--~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
..|..++.+.++...|+++.|.+.++++++..|++...... ++.....| .++...+...++.....+|.....+..+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 34445555555555555555555555555555444422111 11111111 1233333333333223333444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
|.+++.+|++++|+..++++++. ++....+++.++...|+.+
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 44444444444444444444444 2223344444444444443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-06 Score=68.04 Aligned_cols=95 Identities=19% Similarity=0.141 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT---QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~---~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
.-..+.++.++...|+++.|...|+.+++..+|..+. .+.++++.+.. +++++|...++.+ ...++.+.....+
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~--~~~d~Al~~L~~~-~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ--GQYDEALATLQQI-PDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHhc-cCcchHHHHHHHH
Confidence 4556677889999999999999999999987777544 44446665545 7899999999774 3445677788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHh
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al 193 (265)
|.+++++|++++|...+++|+
T Consensus 125 Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 125 GDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.4e-07 Score=61.95 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=42.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.|++++|...|+++...+|.++..+..+|.|+.++|++++|...++++++.+|
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 36788888888888888888888888888888888888888888888877644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.1e-06 Score=70.26 Aligned_cols=75 Identities=12% Similarity=-0.187 Sum_probs=69.7
Q ss_pred hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
...|++++|..+|+-+....|+...-+.++|.|+-++|+|++|...+..|+.+ ||....|+++|+..+|+...+.
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 34589999999999999999999999999999999999999999999999988 8889999999999999987643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.7e-05 Score=80.47 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CCCHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-GSTPMLV 169 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-p~t~~lL 169 (265)
+.+......++..|.+.|++++|.+.|..|.+. .||. .+..+. +......+++++|+.+|+++.... +.+...+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~TynsL--I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-VFFSAL--VDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH--HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 445666777777788888888888888888774 3442 222221 112223467888888888877653 3566677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCccC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD----SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|.+..++.+.|++++|..++.+..+. +..+...+|..+...|+.+++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77778888888888888888777554 3335667777777777776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.5e-06 Score=62.86 Aligned_cols=81 Identities=22% Similarity=0.176 Sum_probs=58.9
Q ss_pred cCChHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3174 109 MYRNDLALKELKVMQDKDEDH--TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~d~--~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe 186 (265)
+|+++.|...+.++++.+|.+ ....+..|++.+.. |++++|+.++++ ....|.++.....+|-|++++|+|+||.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~--~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ--GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT--THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC--CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 688999999999999988842 32333234444434 789999999988 5555555566667799999999999999
Q ss_pred HHHHHH
Q psy3174 187 DLLQDT 192 (265)
Q Consensus 187 ~~l~~a 192 (265)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998875
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-06 Score=61.28 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCH
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD-KYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g-~~eEAe~~l~~al~~~p 197 (265)
.+++++|+..|++..+..|+++.++.++|.|++.+| ++++|...++++++++|
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 377888888888888888888888899999999999 79999999999887655
|
... |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-05 Score=71.51 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=137.2
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---------CChHHHHHHHHHHH--
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---------LPEELSCIKVLAEY-- 80 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---------~~~~l~~~~~~A~~-- 80 (265)
|-..|-..-.|.|..+..-+..+....|... +..-+..|+|+.+|.++.++.-+ +++...-+.-.|.-
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~-~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTPRHP-EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCcCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 4455667777777777665433433333321 11233357777777776554433 34443333333321
Q ss_pred hcCCCcC-cc-----------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccH
Q psy3174 81 LSIPSKN-GS-----------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKL 148 (265)
Q Consensus 81 l~~~~~~-e~-----------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~ 148 (265)
+....+. .+ .....++++....+.=+...|+.|.|.+.+++.++-.-|..+..+.. .. ..+++
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~----~l-~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP----RL-RPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh----hc-CCCCc
Confidence 1111110 00 11256799999999999999999999999999999766666544433 22 22567
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcc
Q psy3174 149 NEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 149 ~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea 216 (265)
..=.+..++-...||++|.++.-+|-.+++.+.|.+|...++.|+.. ...+..-++.++..+|++.++
T Consensus 311 ~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 77778888889999999999999999999999999999999999988 666888899999999998653
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-05 Score=74.96 Aligned_cols=196 Identities=17% Similarity=0.174 Sum_probs=123.2
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhh--hhhHHHHHHHHHHcccChhHHhhhc-CChHHH------HHHHHHHHhc
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKV--LLEKDFYVCRSYLAQKKYKVVLEEK-LPEELS------CIKVLAEYLS 82 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~--~~e~~~~~~Raylalg~~~~~l~ei-~~~~l~------~~~~~A~~l~ 82 (265)
|-+|..+--.|.|+++++-+.++....|+. .+.+- .=+.|.+++|+.++..| .++.+. .=+++-.|-.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cK---vValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCK---VVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhh---HhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 455677778899999999987777654442 21111 23588999999888666 333211 1233444433
Q ss_pred CCCcCcc-----cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 83 IPSKNGS-----SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 83 ~~~~~e~-----~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
..- +++ +..+.+.-++-+.+|++.+++|||+|-++|+...+-+.|+.-.++-...+..+. -..+- ..+
T Consensus 93 nk~-Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~--~~q 165 (652)
T KOG2376|consen 93 NKL-DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ--LLQ 165 (652)
T ss_pred ccH-HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH--HHH
Confidence 221 111 222445557777888999999999999999888776665543333322221111 11111 122
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----------C-HH-------HHHHHHHHHHHcCCCCccC
Q psy3174 158 LIDKYG-STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----------S-ED-------TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 158 l~~~~p-~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----------~-pd-------tl~nl~~~~~~~Gk~~ea~ 217 (265)
....-| +|..++.+.|++++-.|+|++|+++|+.|+.. + .+ +-..|+.|++.+|+..++.
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 222233 47789999999999999999999999999443 2 11 2357899999999998764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-05 Score=80.29 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=111.5
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhc-CCCcC------cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLS-IPSKN------GSSNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~-~~~~~------e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
++=+|+.+++|+.+..-+ ..... .+-.. ...-+++-++...++++++...|++++|++.+.+
T Consensus 373 L~yA~ld~e~~~~A~~~l-----------~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 373 LYYSLNESEQLDKAYQFA-----------VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred HHHHHHhcccHHHHHHHH-----------HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356889999998655422 11111 11000 0123578889999999999999999999999999
Q ss_pred HHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 122 MQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 122 ~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
++...|.+.-..++.|-+.... |++.+|..+++.+...+|++..+..++|.+.+.+|+|.+|+.+...+++..||
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~R--g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLAR--DLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 9999999998888877776655 88999999999998899999999999999999999999999999999998444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-05 Score=62.91 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCC---CHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGS---TPMLVN 170 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~---t~~lLn 170 (265)
++.+.++-++-.+||.++|...|+++++.+.+... ...++++++ ..-|++++|..++++....+|+ ...+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~--~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD--RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 56788889999999999999999999997766542 223344433 2238899999999999999997 666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-+|.++..+|+++||...+.+++..
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7889999999999999999888753
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-05 Score=73.27 Aligned_cols=104 Identities=15% Similarity=-0.020 Sum_probs=92.3
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
+.|++.|...+++++|+.+||++.|...|.++.++.+|++-.. ++++.+.- .|+.-..++..+|+++....|.++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~-a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ-AGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3599999999999999999999999999999999999986554 44454432 35567789999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+..+|..++++|+|.+|....+..++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 999999999999999999999999988
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.5e-05 Score=78.96 Aligned_cols=118 Identities=12% Similarity=0.087 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CCCHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-GSTPMLVNAQVA 174 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-p~t~~lLn~~A~ 174 (265)
.....++..|.+.|+++.|.+.|+.|.+.+ ++++.+..+. +......|++++|..+|+++.... ..+...++.+..
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL--I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA--VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555666666666666666665543 1222111111 111112355666666666665541 123445666666
Q ss_pred HHHHcCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCcc
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD----SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++.+.|++++|..++.+..+. +..+...+|..+...|+.+++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 666666666666666666654 333555666666666665544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-05 Score=75.82 Aligned_cols=122 Identities=17% Similarity=0.086 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+..+.+.+=.+..+..++.+|.|++.+...+..-||++-.+.+.+-+.+.. ++..+|...++.+....|..+.+..++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~--nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEA--NKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 678899999999999999999999999999999999998877777776655 789999999999999999989999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|.++++.|++.||..+|.+.+.. +|+..--|+..+..+|+..++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 99999999999999999998876 888888999999999987654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.3e-06 Score=62.12 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHH
Q psy3174 130 TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTL 200 (265)
Q Consensus 130 ~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl 200 (265)
+...++.... ..+++++|...|+++.+.+|++ +..+..+|.+++..|++++|..++.+++.. .|+++
T Consensus 4 ~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVL----KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3344444443 3488999999999999999865 457888999999999999999999999986 25578
Q ss_pred HHHHHHHHHcCCCCccC----------CCChhhhc
Q psy3174 201 INNMVTAGRLGKGNEMS----------VSPPFLFR 225 (265)
Q Consensus 201 ~nl~~~~~~~Gk~~ea~----------p~hp~~~~ 225 (265)
.+++.++..+|+..++. |+++.+..
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999987644 76665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.9e-06 Score=75.83 Aligned_cols=191 Identities=14% Similarity=0.059 Sum_probs=129.4
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----C-ChHHHHHHHHHHHhcCCCcC--
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----L-PEELSCIKVLAEYLSIPSKN-- 87 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~-~~~l~~~~~~A~~l~~~~~~-- 87 (265)
|.++-+|-|+.|-.-.+.-..+.| ..+.-.++.|+|-...+...++..+ + |.++..+...|......++.
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 556678888888877643222222 2334566678899988887555444 2 22233333344332221111
Q ss_pred ----------------cc-----------cc--------------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 88 ----------------GS-----------SN--------------FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 88 ----------------e~-----------~~--------------~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
|+ ++ -..++|++..++.|.+.-+.+|.+..-+.+++...
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 11 11 15788888888888888888888888888887743
Q ss_pred C-CcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---H
Q psy3174 127 E-DHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---T 199 (265)
Q Consensus 127 ~-d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---t 199 (265)
. |. +-+..|.|+. .+.|.+.-|..-|+=.....|+....||++|+.-++.|+.++|..++.-|-++.|+ .
T Consensus 389 t~~~---~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 389 TQPG---QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred cCcc---hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 2 11 2346888886 45588999999999888888888889999999999999999999999888887776 3
Q ss_pred HHHHHHHHHHcC
Q psy3174 200 LINNMVTAGRLG 211 (265)
Q Consensus 200 l~nl~~~~~~~G 211 (265)
-.|+..++.+.|
T Consensus 466 ~~Nl~~~s~~~g 477 (478)
T KOG1129|consen 466 TTNLQFMSVHYG 477 (478)
T ss_pred ccceeEEeeecC
Confidence 457766665555
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-05 Score=63.04 Aligned_cols=116 Identities=15% Similarity=0.024 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT---QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQ 172 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~---~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~ 172 (265)
.+..+......++.+.+.+.+..+.+-.|+++-. .|..+-+.+ ..|++++|...|+++....|+. +.....+
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~--~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY--EQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4455566667899999999999999988888433 343444433 3488999999999999988753 4467789
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|.+++.+|+|++|...|...-.. .|....-++-++..+|+.+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999774333 666777889999999987653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-05 Score=71.78 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=85.4
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhcCC---CHHHHH
Q psy3174 96 LEINALKIHTY-LTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDLIDKYGS---TPMLVN 170 (265)
Q Consensus 96 lE~~al~v~~~-l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el~~~~p~---t~~lLn 170 (265)
-...+..+..+ +..|+++.|...|+.+++..|++..+-.+.-|++-. ...+++++|...|+.+...||+ .+..+.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45667777766 567999999999999999999987655555555443 2348899999999999999886 566888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHHH
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pdt 199 (265)
.+|.|+..+|++++|..+++++++.+|+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 89999999999999999999999987763
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.9e-06 Score=56.67 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=56.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~ 166 (265)
.++.+++..|+++.|++.|+++++.+|++.-.....+++.... |++++|...|+++.+..|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ--GRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCC
Confidence 5688999999999999999999999999998888888887755 889999999999999999875
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=74.49 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH-TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
--.|..+.++.+|+.+|+++.|-+.|.++...++|+ ++.....+-+.+.. +.+++|...|+.+....|+.+..+.-+
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~--~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR--GDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh--chHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 345678999999999999999999999999999998 66666666666666 669999999999999999988888888
Q ss_pred HHHHHHcC----CHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3174 173 VAVLIAQD----KYEEAWDLLQDTAGD---SEDTLINNMVTAGR 209 (265)
Q Consensus 173 A~~~~~~g----~~eEAe~~l~~al~~---~pdtl~nl~~~~~~ 209 (265)
|.+|...+ ..++|..++.++++. +.+...+++.++..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 88888887 667788888888776 44445555544443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-05 Score=73.88 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+-.+...+...+|++.|...++++.+.+|+ ....+|..++ +.++-.+|..+..+.....|.+..+|+.+|..++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-v~~~LA~v~l----~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE-VAVLLARVYL----LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc-HHHHHHHHHH----hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 333455666789999999999999988876 4445555554 33677899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC
Q psy3174 179 QDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
.++++.|..+.+++.+..|+ +...|+.|+..+|+.++|+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999555 8899999999999999876
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-05 Score=76.62 Aligned_cols=31 Identities=16% Similarity=-0.045 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
.+......++..|.+.|++++|.+.|++|.+
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3445555566666666666666666666655
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.6e-05 Score=72.58 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.+++.-.-++.+|...|.+|.|.+.|+.++...|.+-+ -|..|. .++++..||+..|+++.+..|.-.-+..
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~-----lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL-----LWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH-----HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 78899999999999999999999999999999998873 465554 4568999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC-----------CH--HHHHHHHHHHHHcCCCC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD-----------SE--DTLINNMVTAGRLGKGN 214 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~-----------~p--dtl~nl~~~~~~~Gk~~ 214 (265)
++|+++|.+|-|.||.+.|..||.+ ++ .++.+|=.+...+++++
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9999999999999999999999987 11 35667777777788765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-05 Score=71.14 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhcCC---CHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDLIDKYGS---TPMLVNAQ 172 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el~~~~p~---t~~lLn~~ 172 (265)
+-.|..+.-+++.|+|+.|+..|+..++-.|.++.+..|.=|++=. -++|++++|-++|..+...+|+ .|..|.-+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4488999999999999999999999999999999999999998654 4559999999999999999885 56689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~pdt 199 (265)
|.|...+|+.++|-..|+++.+..|++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999986664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.3e-05 Score=67.55 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH-HHHHHHH
Q psy3174 111 RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY-EEAWDLL 189 (265)
Q Consensus 111 r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~-eEAe~~l 189 (265)
++..|-..|.++.+..+.++.+....++..+.. |+++||..++++..+..|..+..+.++++|...+|+. +++.+++
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~--~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL--GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC--T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 477777777777666556666666667776655 6677777777777777777777777777777777777 4455555
Q ss_pred HHHhcCCH
Q psy3174 190 QDTAGDSE 197 (265)
Q Consensus 190 ~~al~~~p 197 (265)
.+.-..+|
T Consensus 260 ~qL~~~~p 267 (290)
T PF04733_consen 260 SQLKQSNP 267 (290)
T ss_dssp HHCHHHTT
T ss_pred HHHHHhCC
Confidence 55443333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.6e-06 Score=59.03 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.|++++|..+|+++.+.+|.++.++..+|.|++++|++++|..++.+++..+|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 378999999999999999999999999999999999999999999999888555
|
... |
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.2e-05 Score=76.83 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=91.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC-CHHHHHHHHH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDK-----DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS-TPMLVNAQVA 174 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~-----~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~-t~~lLn~~A~ 174 (265)
.+.-++..++-..+.+-+.....+- +..+.+..++.++.+. |++.+|..+|-.+....++ +..++..+|.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~----~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI----GKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc----ccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 4445666666666666666665553 3345778888888854 8899999999999999885 6679999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|++.+|++++|...+..++.. |-|+.+.|+.++..+|+++++.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Confidence 999999999999999999998 5568899999999999998765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00014 Score=73.67 Aligned_cols=143 Identities=10% Similarity=0.043 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC--CHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--TPMLVNA 171 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t~~lLn~ 171 (265)
......++..|.+.|+.++|.+.|++|.+. .||.. |..+ .+......|..++|..+|+++.+.++- +...++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~--ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV-TFLA--VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-HHHH--HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 334444555566666666666666666552 33332 1111 111112335666666666666655442 3345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccC----------CCCh----hhhcHHHHHHHHHHH
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGKGNEMS----------VSPP----FLFRSDETTATLDAC 236 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk~~ea~----------p~hp----~~~~~~~~~~~FD~~ 236 (265)
+..++.+.|+++||.+++++.--. +..+...++..+...|+.+.+. |+++ .+.+...+...+|++
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 666666666666666666543221 3334455555555666554322 4432 233334455566665
Q ss_pred Hhhcc
Q psy3174 237 GLQSN 241 (265)
Q Consensus 237 ~~~~~ 241 (265)
..-+.
T Consensus 548 ~~v~~ 552 (697)
T PLN03081 548 AKVVE 552 (697)
T ss_pred HHHHH
Confidence 55443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-05 Score=73.59 Aligned_cols=84 Identities=11% Similarity=-0.023 Sum_probs=76.0
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC---
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS--- 217 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~--- 217 (265)
..+++.+|...|+++....|.++..+..+|.|++.+|++++|...+.+++++ ++..+.+++.++..+|+..++.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999998 6668899999999999988765
Q ss_pred -------CCChhhhcHH
Q psy3174 218 -------VSPPFLFRSD 227 (265)
Q Consensus 218 -------p~hp~~~~~~ 227 (265)
|+++-+....
T Consensus 94 ~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 94 EKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHhCCCCHHHHHHH
Confidence 8888776554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00015 Score=74.95 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHH--HHHHHHHHHHHcCCCCcc
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SED--TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pd--tl~nl~~~~~~~Gk~~ea 216 (265)
|++++|..+|+++ +.+...+|.+...+.+.|+.++|..++.+..+. .|| |...++..+.+.|..+++
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 4455555555544 334455666666677777777777777766554 344 555566666666665543
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0002 Score=67.60 Aligned_cols=197 Identities=12% Similarity=-0.022 Sum_probs=113.1
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhh---hc---C-ChH-HHHHHHHHHHhcCCCcC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLE---EK---L-PEE-LSCIKVLAEYLSIPSKN 87 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~---ei---~-~~~-l~~~~~~A~~l~~~~~~ 87 (265)
+-.||.|.|.+++..+++....+|.+..--|+|.+-..+ -|.++.+-+ .+ + +.. .-.|.+-..|....-++
T Consensus 240 k~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~-eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 240 KCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQ-EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHh-ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence 678999999999999888888888876566666433222 233432111 11 0 000 00000000111110000
Q ss_pred -------cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 88 -------GSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 88 -------e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...-.+.+.+.+.+.+..++.++|+.+|.=.|+.++.+.|-..-+.-.+.--+|+. +++.||.++-.+...
T Consensus 319 AL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~--~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 319 ALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ--KRFKEANALANWTIR 396 (564)
T ss_pred HHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh--chHHHHHHHHHHHHH
Confidence 00234788999999999999999999999999999998876654443333333334 678888888777665
Q ss_pred hcCCCHHH------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCHH--HHHH
Q psy3174 161 KYGSTPML------------------------------------VNAQVAVLIAQDKYEEAWDLLQDTAGDSED--TLIN 202 (265)
Q Consensus 161 ~~p~t~~l------------------------------------Ln~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl~n 202 (265)
.+|.+... .+.+|-.+...|+++.+..+|++.|...|| ....
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~ 476 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNH 476 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHH
Confidence 55544433 344555555555555555555555555333 3334
Q ss_pred HHHHHHHcCCCCc
Q psy3174 203 NMVTAGRLGKGNE 215 (265)
Q Consensus 203 l~~~~~~~Gk~~e 215 (265)
|+-+....+.+.+
T Consensus 477 Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 477 LGDIMRAQNEPQK 489 (564)
T ss_pred HHHHHHHhhhHHH
Confidence 4555555554444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.4e-05 Score=54.22 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
.+++++|...|+++....|.++.++..+|.++..+|++++|...+.+++.. +++++.+++.++...|+..
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 478999999999999999988889999999999999999999999999987 6668888888888888754
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.4e-05 Score=65.46 Aligned_cols=102 Identities=10% Similarity=-0.131 Sum_probs=66.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
..+.+|.++..+.-+...||+++|++.|+-..-.++-+.---+++|-+. +-.++|++|...|--..-..+++|.....
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~--Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC--QLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 3567777777777777777777777777776665555542222222221 23366777777777766666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.|.|++++|+.++|...+..+.+.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 777777777777777777777765
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00041 Score=64.31 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=120.8
Q ss_pred HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccC
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFG 93 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~ 93 (265)
+++++|-.|+|+.+|..+..+....|...- ...+.+.||++-|+...+|.++ +..+. ...
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~~Wda~-l~~~Rakc~i~~~e~k~AI~Dl--------k~ask-----------Ls~ 220 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQPWDAS-LRQARAKCYIAEGEPKKAIHDL--------KQASK-----------LSQ 220 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcCcchhH-HHHHHHHHHHhcCcHHHHHHHH--------HHHHh-----------ccc
Confidence 568899999999999998777777776531 2233355699999998888743 21111 123
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHH------------HHH--------HHHHHH-----------
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQ------------LCS--------AWVHIA----------- 142 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~------------la~--------a~v~l~----------- 142 (265)
++.|.++-..+.+...|+...+.+.+++-++++|||-.+- |-. -|....
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 5778888888888888888888888888888888875441 100 121111
Q ss_pred -----------------hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 143 -----------------NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 143 -----------------~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+.+++.||+..-.|+.+..|++...|-..|-+|+.-..|++|...++.|++.+++
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 33466777888888888888888889999999999999999999999999988443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00077 Score=59.92 Aligned_cols=168 Identities=9% Similarity=0.093 Sum_probs=115.5
Q ss_pred CcchhHHH-HHhhhhccHHHHHHHHhhcccCChh--hhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCC
Q psy3174 8 EVDELFDV-RNSYYLGNYQQCIKEGQRLKATDPK--VLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIP 84 (265)
Q Consensus 8 ~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~--~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~ 84 (265)
+++++|.. ...|-.|+|.+|++.++++....|. ......++++.+|..+++++.++.. ++ +|+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~--------~e---~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAA--------ID---RFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHH--------HH---HHHHhC
Confidence 45556665 5555559999999998777765543 3445567889999999999877662 22 222211
Q ss_pred CcCcccccCCCHHHHHHHHHHHHHcCC------------------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----
Q psy3174 85 SKNGSSNFGTHLEINALKIHTYLTMYR------------------NDLALKELKVMQDKDEDHTLTQLCSAWVHIA---- 142 (265)
Q Consensus 85 ~~~e~~~~~~~lE~~al~v~~~l~~~r------------------~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---- 142 (265)
.+++...+++++++.++..+++ ...|.+.++++++.-|++.-...|.-++...
T Consensus 100 -----P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 100 -----PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred -----cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 2445667788888877655441 2356677888888888876554443322211
Q ss_pred -----------hccccHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 143 -----------NNVDKLNEAFYTLQDLIDKYGSTP---MLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 143 -----------~g~~~~~eA~~~~~el~~~~p~t~---~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
...|+|.-|..-|+.+.+.+|.|+ ..|..+..++..+|..++|.....-
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 223788899999999999999754 4788888999999999999887643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.98 E-value=1e-05 Score=58.36 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHHH-------hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 146 DKLNEAFYTLQDLI-------DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 146 ~~~~eA~~~~~el~-------~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
|++++|...|++.. +.+|.+...++++|.|+..+|++++|+.+++++++
T Consensus 19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555555543 22344566899999999999999999999999986
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00026 Score=60.99 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=101.2
Q ss_pred CcchhHHH-HHhhhhccHHHHHHHHhhcccCCh--hhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCC
Q psy3174 8 EVDELFDV-RNSYYLGNYQQCIKEGQRLKATDP--KVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIP 84 (265)
Q Consensus 8 ~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~--~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~ 84 (265)
+++++|.. ...|-.|+|.+|++.++++....| ....+..++++.++...|++..++.. +-+|+..-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~-----------~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAA-----------YERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHH-----------HHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-----------HHHHHHHC
Confidence 34556666 889999999999999887775433 23566788889999999999876662 22222211
Q ss_pred CcCcccccCCCHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHccCCCcHHHHHHHH------------HHHH
Q psy3174 85 SKNGSSNFGTHLEINALKIHTYLTMYR-----------NDLALKELKVMQDKDEDHTLTQLCSA------------WVHI 141 (265)
Q Consensus 85 ~~~e~~~~~~~lE~~al~v~~~l~~~r-----------~d~Aek~l~~~~~~~~d~~l~~la~a------------~v~l 141 (265)
.+++...++++++++++..+.+ ...|...++.+++.-|++.-+..|.- -+.+
T Consensus 73 -----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 73 -----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp -----TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334556788888888766532 33677777777777776644322211 1111
Q ss_pred H---hccccHHHHHHHHHHHHhhcCCCHH---HHHHHHHHHHHcCCHHHHH
Q psy3174 142 A---NNVDKLNEAFYTLQDLIDKYGSTPM---LVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 142 ~---~g~~~~~eA~~~~~el~~~~p~t~~---lLn~~A~~~~~~g~~eEAe 186 (265)
+ ...+++..|..-|+.+.+.+|+|+. .|..++.++.++|....|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1 2336777888888888888887655 5667777777777777543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=71.22 Aligned_cols=125 Identities=12% Similarity=0.064 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHhh
Q psy3174 93 GTHLEINALKIHTYLTMYR-----NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV------DKLNEAFYTLQDLIDK 161 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r-----~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~------~~~~eA~~~~~el~~~ 161 (265)
+.++++.-+..+....+++ +..|...|+++++.+|+.....-..+|....... ++...+....++....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 6777776554444444443 6799999999999999998766655565544221 2344555555554443
Q ss_pred --cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCccC
Q psy3174 162 --YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 162 --~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ea~ 217 (265)
.|.++.++..+|..+..+|++++|...+++|++++|. ....++.++...|++.++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5667788888999999999999999999999999554 5678899999999988764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=7e-05 Score=52.55 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhcC
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD-KLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~-~~~eA~~~~~el~~~~p 163 (265)
++.+.....+.++..+|+++.|.+.|+++++.+|++.......+.+.... + ++.+|+..|++..+..|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~--~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL--GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHcCc
Confidence 35788999999999999999999999999999999986655555554444 5 79999999999988776
|
... |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00085 Score=69.47 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=110.6
Q ss_pred hhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-------CChHHHHHHHHHHHhcCCCcCcc---
Q psy3174 20 YLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-------LPEELSCIKVLAEYLSIPSKNGS--- 89 (265)
Q Consensus 20 y~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-------~~~~l~~~~~~A~~l~~~~~~e~--- 89 (265)
-.|.+..|...++++...+.. .-.-+..+|...|+++.++.-+ -.|....+..+...+...+..+.
T Consensus 335 k~g~~~~A~~vf~~m~~~d~~----s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 335 SLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred hcCCHHHHHHHHhhCCCCCee----eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 457777777766555432211 1122346677777776554332 12332222222222222222111
Q ss_pred -------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 90 -------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 90 -------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
.....+......++..|.+.|+++.|.+.|++|.+.+.. +-+.+..++. ..+++.+|+.+|+++....
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v-s~~~mi~~~~----~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI-SWTSIIAGLR----LNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee-eHHHHHHHHH----HCCCHHHHHHHHHHHHhCC
Confidence 112345566667788999999999999999998653221 1111222222 3478899999999987553
Q ss_pred CCCHH-----------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy3174 163 GSTPM-----------------------------------LVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTA 207 (265)
Q Consensus 163 p~t~~-----------------------------------lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~ 207 (265)
+.+.. +.|.+-..|.+.|++++|...+.+. ..+..+...+|..+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 32222 2234446778889999999888877 44777888899999
Q ss_pred HHcCCCCccC
Q psy3174 208 GRLGKGNEMS 217 (265)
Q Consensus 208 ~~~Gk~~ea~ 217 (265)
...|+..++.
T Consensus 565 ~~~G~~~~A~ 574 (857)
T PLN03077 565 VAHGKGSMAV 574 (857)
T ss_pred HHcCCHHHHH
Confidence 9999987765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.1e-05 Score=59.28 Aligned_cols=71 Identities=23% Similarity=0.186 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGS--TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~--t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++++++|..+|+++.+..|. ....+..+|.|++++|+|++|..++++ .+. +++...-++.|+..+|+.+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 37899999999999999995 345666799999999999999999988 544 667788889999999997654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00026 Score=59.23 Aligned_cols=106 Identities=15% Similarity=0.009 Sum_probs=85.9
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---
Q psy3174 119 LKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--- 195 (265)
Q Consensus 119 l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--- 195 (265)
++.+..+.++..-..-+.|+--.-. |++++|..+|+=+.-..|+.+.-+.++|.|+..+|+|++|...+-.|...
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~--Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~ 103 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQ--GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN 103 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 4555555555443333345553334 89999999999999999999999999999999999999999999999876
Q ss_pred CHHHHHHHHHHHHHcCCCCccC---------CCChhhhcH
Q psy3174 196 SEDTLINNMVTAGRLGKGNEMS---------VSPPFLFRS 226 (265)
Q Consensus 196 ~pdtl~nl~~~~~~~Gk~~ea~---------p~hp~~~~~ 226 (265)
||-..++.+-|+..+|+...+. |.|+.++.-
T Consensus 104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~ 143 (165)
T PRK15331 104 DYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAK 143 (165)
T ss_pred CCCccchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHH
Confidence 8889999999999999998765 777777664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00078 Score=58.00 Aligned_cols=154 Identities=13% Similarity=0.093 Sum_probs=106.3
Q ss_pred HHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 45 KDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 45 ~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
..+-.+...+..|++..++.. +..+..-. ...+-..++.+.++.++...|+++.|...+++.++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~--------f~~l~~~~--------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKL--------FEKLIDRY--------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHH--------HHHHHHH---------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHH--------HHHHHHHC--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455567888899998877662 22222110 12234567889999999999999999999999999
Q ss_pred cCCCcHHH-----HHHHHHHHHHhc-------cccHHHHHHHHHHHHhhcCCCHHHH-----------------HHHHHH
Q psy3174 125 KDEDHTLT-----QLCSAWVHIANN-------VDKLNEAFYTLQDLIDKYGSTPMLV-----------------NAQVAV 175 (265)
Q Consensus 125 ~~~d~~l~-----~la~a~v~l~~g-------~~~~~eA~~~~~el~~~~p~t~~lL-----------------n~~A~~ 175 (265)
..|+|... .++.++.....+ ++...+|+..|+++..++|+|+..- ...|.-
T Consensus 71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877544 344444433322 2557799999999999999875431 346788
Q ss_pred HHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCC
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ 214 (265)
++..|+|..|..-++.+++. .++.+.-++..+..+|...
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 99999999999999999987 4457788899999998753
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00075 Score=67.70 Aligned_cols=118 Identities=14% Similarity=0.006 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
++..+++-.+.+.+..|.|.-.+.++..+++-.+=..--.+.... ..|+..||+..|.......|+.+.++.++|-|+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~--~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE--VKGQLEEAKEAFLVALALDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH--HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 445566777777777777777777777777655422211222222 336677888888887777787777777788888
Q ss_pred HHcCCHHHHHH--HHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 177 IAQDKYEEAWD--LLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 177 ~~~g~~eEAe~--~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++.|+-.-|+. ++.+++.. +|+.+.+++.+...+|....+
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 88777666666 77777777 777777888888888776543
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00018 Score=65.28 Aligned_cols=107 Identities=12% Similarity=0.100 Sum_probs=93.5
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH
Q psy3174 105 TYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY 182 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~ 182 (265)
-+.+.++|.+|...|.++++++|.+.+. +-|.||..| |.+..|..--+......|.....+--+|.++..+|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L----g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL----GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh----cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 4566789999999999999999988765 777788876 5599999999999999999889999999999999999
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCc
Q psy3174 183 EEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 183 eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~e 215 (265)
++|++.+++||+++|+ .-.||-++-..++.+.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~ 201 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKS 201 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999554 66799888888888763
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=74.67 Aligned_cols=122 Identities=11% Similarity=0.106 Sum_probs=98.0
Q ss_pred ccc-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-------
Q psy3174 90 SNF-GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK------- 161 (265)
Q Consensus 90 ~~~-~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~------- 161 (265)
+++ |.+.+.+-.++.+|...|++|.|.+.....++..|+++...+.++++.+.. ++++++-.+ .+.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~--~~~~~~~lv--~~l~~~~~~~~~ 99 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR--RPLNDSNLL--NLIDSFSQNLKW 99 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh--cchhhhhhh--hhhhhcccccch
Confidence 454 789999999999999999999999999999999999998888888876654 334444443 33333
Q ss_pred ------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 162 ------------YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 162 ------------~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
+|.+..+|.++|.||-++|++++|..+++++++. ||.+|-|++..+... +.+.+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 4444478999999999999999999999999998 777999999988888 54443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=60.81 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
.+++++|...|+++....|+ .+.+++++|.++..+|++++|...+++++.. +++++.|++.++..+|+
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 37899999999999877665 4458999999999999999999999999988 66688899999996664
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=67.79 Aligned_cols=199 Identities=14% Similarity=0.076 Sum_probs=135.2
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhc-CChHHHHHHHHHHHhcCC-------CcCcc-------------------cccCC
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEK-LPEELSCIKVLAEYLSIP-------SKNGS-------------------SNFGT 94 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei-~~~~l~~~~~~A~~l~~~-------~~~e~-------------------~~~~~ 94 (265)
......+.+.|+.-+|.++.++++. ..-.+.+....|.|+... ..... -..++
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 3455666778888888888766654 222233344444443321 11100 01277
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
-+|..-..+--..+.|++..|...|..++.+||+++-++ +.-|.|.+ ..-||..||+.--.+.....|.-+..|.-
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n-aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN-AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh-HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence 788888888899999999999999999999999976442 22233333 12288999999999999998888888889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC--CHH---HHHHHHHHHHHcCCCC---------cc-------------CCCChhhh
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD--SED---TLINNMVTAGRLGKGN---------EM-------------SVSPPFLF 224 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~--~pd---tl~nl~~~~~~~Gk~~---------ea-------------~p~hp~~~ 224 (265)
.|.||+.+++|++|.+.+++|++. +++ +|.+...-+....+.+ .+ +-.||..-
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ 406 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN 406 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC
Confidence 999999999999999999999987 433 5655554444332221 11 04555544
Q ss_pred cH--HHHHHHHHHHHhhcc
Q psy3174 225 RS--DETTATLDACGLQSN 241 (265)
Q Consensus 225 ~~--~~~~~~FD~~~~~~~ 241 (265)
.- .+-+..|-++.+-|.
T Consensus 407 agsq~eaE~kFkevgeAy~ 425 (486)
T KOG0550|consen 407 AGSQKEAEAKFKEVGEAYT 425 (486)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 33 456777888887775
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00042 Score=57.80 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=62.6
Q ss_pred ccccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
..|++++|...|+++....|+ ....+..+|.++..+|++++|...+.++++. ++..+.+++.++..+|+...+
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEE 125 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhH
Confidence 338899999999999877664 3468999999999999999999999999998 566788999999999986543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.7e-05 Score=51.83 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=55.6
Q ss_pred HHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 106 YLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 106 ~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
++..|+++.|.+.|+++++.+|++.-..+..+.+.+.. |++++|..+++++....|+++.....+|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ--GQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT--T-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46789999999999999999999988777777776666 7899999999999999998776665544
|
... |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00091 Score=64.15 Aligned_cols=107 Identities=16% Similarity=0.013 Sum_probs=94.6
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.+.|+|+=..-+++.+++..||..+|.+.+++++..+|+..+..+..+-..+.. |++++|..+.++..-..|++|..+
T Consensus 334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~--g~~~eai~~L~~~~~~~p~dp~~w 411 (484)
T COG4783 334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG--GKPQEAIRILNRYLFNDPEDPNGW 411 (484)
T ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc--CChHHHHHHHHHHhhcCCCCchHH
Confidence 356999999999999999999999999999999999999987766655554434 789999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC--CHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD--SED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~--~pd 198 (265)
+.+|-++-.+|+-.+|....-+.+.. +.+
T Consensus 412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~ 442 (484)
T COG4783 412 DLLAQAYAELGNRAEALLARAEGYALAGRLE 442 (484)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999988888776 444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=65.43 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~e 215 (265)
.++|++|+..|+++...||++ +..+..+|.++..+|+|++|...++++++. .||.+..++.++..+|+..+
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 478999999999999999976 568999999999999999999999999976 57799999999999998776
Q ss_pred cC
Q psy3174 216 MS 217 (265)
Q Consensus 216 a~ 217 (265)
+.
T Consensus 236 A~ 237 (263)
T PRK10803 236 AK 237 (263)
T ss_pred HH
Confidence 43
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00032 Score=65.25 Aligned_cols=201 Identities=12% Similarity=0.062 Sum_probs=120.7
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---CChHH--HHHHHHHHHhcCCCc
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---LPEEL--SCIKVLAEYLSIPSK 86 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---~~~~l--~~~~~~A~~l~~~~~ 86 (265)
|.-...+|.+|+|++|++....+.. +++..-+..++.+=++-=+|+|..+-+-. +..+| +.+-.+|-=+...++
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMN-KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhc-cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 4455778999999999998644433 22223355677777777788886443322 22222 222223322222111
Q ss_pred Ccc--cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 87 NGS--SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 87 ~e~--~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
--. ....+++|-...++.+...--.+.+|...|++++.-+++-.-.+ +|+.|..+ +=|+=+..+..-..+.+
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl----DYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKL----DYYDVSQEVLKVYLRQF 215 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc----chhhhHHHHHHHHHHhC
Confidence 100 33467778777777776666678899999999888666654433 33333333 44666666777777889
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHH----------------HHHHH----------HhcC-------CHHHHHHHHHHH
Q psy3174 163 GSTPMLVNAQVAVLIAQ--DKYEEAW----------------DLLQD----------TAGD-------SEDTLINNMVTA 207 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~--g~~eEAe----------------~~l~~----------al~~-------~pdtl~nl~~~~ 207 (265)
|+++...|.+|+.+.+. ||..|++ .+.+- |++. =|+.-.||+..+
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 99888888888888775 4443333 22221 1111 466667888888
Q ss_pred HHcCCCCccC
Q psy3174 208 GRLGKGNEMS 217 (265)
Q Consensus 208 ~~~Gk~~ea~ 217 (265)
..+|.-.|+.
T Consensus 296 L~q~dVqeA~ 305 (557)
T KOG3785|consen 296 LNQNDVQEAI 305 (557)
T ss_pred cccccHHHHH
Confidence 7787776665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.8e-06 Score=58.48 Aligned_cols=54 Identities=28% Similarity=0.185 Sum_probs=45.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-------CHH---HHHHHHHHHHHcCCCCc
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-------SED---TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-------~pd---tl~nl~~~~~~~Gk~~e 215 (265)
||++..+++++|.++..+|+|++|..+++++++. +|+ ++.|++.|+..+|+.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 64 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEE 64 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 5777889999999999999999999999999976 444 56799999999998654
|
... |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0013 Score=68.25 Aligned_cols=131 Identities=11% Similarity=-0.006 Sum_probs=98.1
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH----------
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI---------- 159 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~---------- 159 (265)
+.++.+-.+++.++.||-+||+.++|...|.++++++|+++.+..-.||.. +.. ++++|..++.++.
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~-ae~--dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY-EEE--DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHh--hHHHHHHHHHHHHHHHHhhhcch
Confidence 345777789999999999999999999999999999999987766666663 332 6788887777753
Q ss_pred ----------hhcCC--CH------HHHHHHH------------HHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHH
Q psy3174 160 ----------DKYGS--TP------MLVNAQV------------AVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVT 206 (265)
Q Consensus 160 ----------~~~p~--t~------~lLn~~A------------~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~ 206 (265)
...|+ +. .++-..+ .+|-...+|+++..+|+.+|+.+|. .+..++.|
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~ 266 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF 266 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 33343 22 2233334 7888999999999999999999444 67788877
Q ss_pred HHHcCCCCccCCCChhhhcHHHH
Q psy3174 207 AGRLGKGNEMSVSPPFLFRSDET 229 (265)
Q Consensus 207 ~~~~Gk~~ea~p~hp~~~~~~~~ 229 (265)
+. |+. ++||...++..+
T Consensus 267 y~--~kY----~~~~~~ee~l~~ 283 (906)
T PRK14720 267 YK--EKY----KDHSLLEDYLKM 283 (906)
T ss_pred HH--HHc----cCcchHHHHHHH
Confidence 76 443 567777777663
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00092 Score=59.59 Aligned_cols=123 Identities=14% Similarity=0.079 Sum_probs=106.2
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
+++|+|.-..-+.++.+..+|+++.|.+.|...++-||-++.+.-- -+.+...+|+..+|+.-..+..+.|+.++.++
T Consensus 80 ~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR--KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW 157 (289)
T KOG3060|consen 80 DRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR--KLAILKAQGKNLEAIKELNEYLDKFMNDQEAW 157 (289)
T ss_pred HhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH--HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHH
Confidence 5679999999999999999999999999999999988888876542 33444555788899999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
.-+|-+|+..|.|+.|.=++++.+=. +|-...-++-+...+|..+
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999876 6667778888888888743
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0045 Score=60.94 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=32.2
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHh
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL 63 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l 63 (265)
||.+.=..=.|.|++|++..++....-.|. +......++.++.+|+++.+.
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk-~~~~E~rA~ll~kLg~~~eA~ 58 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILDK-LAVLEKRAELLLKLGRKEEAE 58 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCCH-HHHHHHHHHHHHHcCCHHHHH
Confidence 555555556799999999875444333332 223444578899999987543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00053 Score=56.11 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDED---HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PM 167 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d---~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~ 167 (265)
.+.+-++..++-.+..|+++.|.+.|+.+..--|- ..-++|.+++..... +++.+|...+++....||.+ +.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--GDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCCCccH
Confidence 46778899999999999999999999999886554 455567777776666 77999999999999988854 44
Q ss_pred HHHHHHHHHHHcCC---------------HHHHHHHHHHHhcCCH
Q psy3174 168 LVNAQVAVLIAQDK---------------YEEAWDLLQDTAGDSE 197 (265)
Q Consensus 168 lLn~~A~~~~~~g~---------------~eEAe~~l~~al~~~p 197 (265)
.+...|.+++.+.. ..+|...+++.+...|
T Consensus 86 a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 86 AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 78888999998877 5556666555555433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00043 Score=65.84 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
...+|..++++++++.+|+-.+|.+.+.++++..|.+.......+-.-+.. ++++.|..+.+++....|+....+..+
T Consensus 197 ~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k--~~~~lAL~iAk~av~lsP~~f~~W~~L 274 (395)
T PF09295_consen 197 ERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK--KKYELALEIAKKAVELSPSEFETWYQL 274 (395)
T ss_pred hcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 456889999999999999999999999999998887765555555554444 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~ 190 (265)
|.||+++|+|++|.-.+.
T Consensus 275 a~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 275 AECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHhcCCHHHHHHHHh
Confidence 999999999999987765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0016 Score=65.34 Aligned_cols=205 Identities=18% Similarity=0.107 Sum_probs=141.1
Q ss_pred ccCChhhhhhHHHHHHHHHHcccChhHHhhhc-------CChHHHHHHHHHHHhcCCCcCcc---------cccCCCHHH
Q psy3174 35 KATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-------LPEELSCIKVLAEYLSIPSKNGS---------SNFGTHLEI 98 (265)
Q Consensus 35 ~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-------~~~~l~~~~~~A~~l~~~~~~e~---------~~~~~~lE~ 98 (265)
...+|+. .+|..-=|.-+++.+.++.-+ ....+.++.++|-.++..++-.. ..+++|.-+
T Consensus 474 d~~dp~~----if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 474 DPTDPLV----IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred CCCCchH----HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 4455543 444444455566655444333 22236678888888876655322 345777777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHc------------------------------------------------------
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQD------------------------------------------------------ 124 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~------------------------------------------------------ 124 (265)
+...+++-+..|+..+|......++.
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 77777777777777766665554443
Q ss_pred ----------cCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 125 ----------KDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 125 ----------~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
.++|++-..+-.-|+..+ .-.+..++|..-..|+...+|-.+..++..|.++..+|.++||...+..
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 134444444444455444 2336788899899999999999999999999999999999999999999
Q ss_pred HhcCCHH---HHHHHHHHHHHcCCCCccC------------CCCh----hhhcHHHHHHHHHHHHhhcccc
Q psy3174 192 TAGDSED---TLINNMVTAGRLGKGNEMS------------VSPP----FLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 192 al~~~pd---tl~nl~~~~~~~Gk~~ea~------------p~hp----~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
|+..||+ .+..++.++...|.+.-+. |.+| .+-....+...|++.++-|...
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999555 8889999999999764321 7776 3445577888899998888754
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0018 Score=58.33 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc----cCC--CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQD----KDE--DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~----~~~--d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~ 166 (265)
+..+-++.-++.+..+.|+...|++.+..+-+ ++. ...+.-.+.+.+.+ |+.++-+|+..|.++....|.++
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l--g~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL--GQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee--cccchHHHHHHHhhccccCCCch
Confidence 45677888888899999999999999985533 322 34444455555554 66899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGR 209 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~ 209 (265)
..-|+.|.|++-.|+.-.|.+.++.+.++ +..+++||-+.+..
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999998 44466777665543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00022 Score=50.44 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=44.0
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
..+++++|...++.+...+|.++..+...|.|+..+|+|.+|...+.++++.+|
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 347788888888888888888888888888888888888888888888887743
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00015 Score=70.43 Aligned_cols=149 Identities=15% Similarity=0.064 Sum_probs=118.7
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---------------------------
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA--------------------------- 142 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~--------------------------- 142 (265)
+.+|..+=.++..+.-|+.+|++++|++-+.++..+|+--- .||++++
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-----paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-----PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-----HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence 45799888899989999999999999999999988766322 2333322
Q ss_pred ---------hc-cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CHH------HHHH
Q psy3174 143 ---------NN-VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----SED------TLIN 202 (265)
Q Consensus 143 ---------~g-~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----~pd------tl~n 202 (265)
-+ .++++-|..+|.++....|.+|.++|-+|++....+.|++|..+++.+++. .++ ++.|
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 11 266788999999999999999999999999999999999999999999965 444 4789
Q ss_pred HHHHHHHcCCCCccC----------CCChh----hhcHHHHHHHHHHHHhhcccc
Q psy3174 203 NMVTAGRLGKGNEMS----------VSPPF----LFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~----------p~hp~----~~~~~~~~~~FD~~~~~~~~~ 243 (265)
|+-++..+++..+++ |..+- +--.-.+...||.++.-|.-+
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 999999999998876 54443 333455778888888887744
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0047 Score=58.02 Aligned_cols=230 Identities=15% Similarity=0.118 Sum_probs=139.6
Q ss_pred hhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChh---HHhhhc----CChHHHHHHHHHHHhcCCCcCcc-
Q psy3174 18 SYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYK---VVLEEK----LPEELSCIKVLAEYLSIPSKNGS- 89 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~---~~l~ei----~~~~l~~~~~~A~~l~~~~~~e~- 89 (265)
.++-|+|++|...+.+-..-. +...-..+..+|+-=..|+++ .-+.++ .++.+...-.-++.+-..++...
T Consensus 94 ~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 94 KLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 356799999998864422222 222222333355555555554 233444 23334334445555555544332
Q ss_pred --------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHhccccHHHHHH---HH
Q psy3174 90 --------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK---DEDHTLTQLCSAWVHIANNVDKLNEAFY---TL 155 (265)
Q Consensus 90 --------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~---~~d~~l~~la~a~v~l~~g~~~~~eA~~---~~ 155 (265)
+..|.+++.+-+..++|...|++...-+++.++.+. .+.+..-.--.+|.++-.....-+.+.- ..
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 456999999999999999999999999999999773 3334433444588877743322222332 33
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCccC----------CCChhh
Q psy3174 156 QDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEMS----------VSPPFL 223 (265)
Q Consensus 156 ~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~ 223 (265)
+++.++--.+|.+..+.|.=+++.|..++|.+++.+++.+ ||. |.-++-+... |++..-. |+.|.+
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~-~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRP-GDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCC-CCchHHHHHHHHHHHhCCCChhH
Confidence 3333333356888899999999999999999999999998 666 4333332221 1111100 777744
Q ss_pred hcH----HHHHHHHHHHHhhccccCCCCCcc
Q psy3174 224 FRS----DETTATLDACGLQSNSESTPRDSG 250 (265)
Q Consensus 224 ~~~----~~~~~~FD~~~~~~~~~~~~l~~~ 250 (265)
... .-+++.|-+...-|..++...+|+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 433 336777777766666655555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.002 Score=61.81 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=119.7
Q ss_pred HHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHc---C------ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHh
Q psy3174 73 CIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTM---Y------RNDLALKELKVMQDKDEDHTLTQLCSAWVHIAN 143 (265)
Q Consensus 73 ~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~---~------r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~ 143 (265)
++.++-+.+++. ...|+..++++.++.|+... | ...+|...-+++.++|++++.+.-.++.+....
T Consensus 277 Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 277 AMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 455555544332 23467778888888888764 2 245677788889999999998888888876666
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH----HHHHHHH-HHHHcCCCCccC-
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED----TLINNMV-TAGRLGKGNEMS- 217 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd----tl~nl~~-~~~~~Gk~~ea~- 217 (265)
| +++.|...|++.....|+++..+...|+++..-|+.++|...+++++.++|- .+.-+.+ .+.+.+-+. ++
T Consensus 352 ~--~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~-~~~ 428 (458)
T PRK11906 352 G--QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKN-NIK 428 (458)
T ss_pred c--chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhh-hHH
Confidence 4 4999999999999999999999999999999999999999999999999777 2334444 444444332 22
Q ss_pred --------CCChhhhcHHHHHHHHHHHHh
Q psy3174 218 --------VSPPFLFRSDETTATLDACGL 238 (265)
Q Consensus 218 --------p~hp~~~~~~~~~~~FD~~~~ 238 (265)
..|..+.+..-|.+..-|++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (458)
T PRK11906 429 LYYKETESESHRVIIDNILKLKQLTRICM 457 (458)
T ss_pred HHhhccccccchhhHHHHHHHHHHHHHhc
Confidence 778888888878777777764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00071 Score=60.15 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhcCCC---HHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDLIDKYGST---PMLV 169 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el~~~~p~t---~~lL 169 (265)
.+.+-.+..+..+...|+++.|.+.|++++...|++..+..+.-|+..+ ...+++++|...|++....+|.+ +..+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 5788899999999999999999999999999999998887555444333 23488999999999999999954 4478
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDK------------------YEEAWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~------------------~eEAe~~l~~al~~~pd 198 (265)
..+|.|++.+++ ..+|...+++.++..|+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~ 156 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN 156 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence 889988877652 25677888888887555
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0027 Score=58.50 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS-TPMLVNAQVAVLI 177 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~-t~~lLn~~A~~~~ 177 (265)
..-++|.++.-+++|.|...++++++.+|..+=+.+.++-|.+.. |+|+.|...++.+.+..|+ .+.++..+..||.
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~--g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK--GDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc--cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 456677777788888888888888888888887777788777766 6788888888888888886 6668888888888
Q ss_pred HcCCHHHHHHHHHHHhcC
Q psy3174 178 AQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~ 195 (265)
++|+.++.+..|.++.+.
T Consensus 261 ~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 261 QLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhCCHHHHHHHHHHHHHc
Confidence 888888888888888876
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=57.06 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHc---cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC--CHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQD---KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--TPML 168 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~---~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t~~l 168 (265)
.+....+.++-.+...||+.+|+..|.+++. .++...+.-+|.+-+.+ ++.-+|....+++.+.+|. +|..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~----~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI----QEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh----ccHHHHHHHHHHHhhcCCccCCCCc
Confidence 4556678888899999999999999999987 34455666666666533 7799999999999999884 6776
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea 216 (265)
....|-++..+|+++.|+..++.+++- .|..-+-.++....+|+..++
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHH
Confidence 667788999999999999999999998 777778888999999987653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0057 Score=56.40 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
+++=-+..||-.......|...-.+...++++.--..+|.-|..++ ...++.+.|...+.+..+..|...-.-..+|
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 3444556678788888888888888888888888788888887777 3447888999999999999997666555788
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCHH----HHHHHHHHHHHcCCCCcc
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGDSED----TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~~pd----tl~nl~~~~~~~Gk~~ea 216 (265)
.+++++|+|+.|.+.++.+++.||+ ++--|..|+.++|++.+-
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999888 456889999999999764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=59.74 Aligned_cols=119 Identities=7% Similarity=0.013 Sum_probs=97.3
Q ss_pred cCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMY-RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~-r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.|++..+...+..++..+| ++++|...+.++++.+|++.-+-.--+|+--..|...++++..+++++.+..|.+..+++
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence 4667788888888999998 579999999999999999983322223332223322347889999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
..++++..+|+|++|.+...++++. |.....+.+.+..++
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999997 777888888888776
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0029 Score=62.27 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3174 44 EKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQ 123 (265)
Q Consensus 44 e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~ 123 (265)
|..+|....+...|+++.+++.+ ... .....+.+..+=.++.+|+++||.++|++.|+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L---------------~~~----~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHL---------------EKN----EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH---------------Hhh----hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777888999998877732 110 12345667777778889999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHH-HHh--ccccHHHHHHHHHHHHh----------------------------------------
Q psy3174 124 DKDEDHTLTQLCSAWVH-IAN--NVDKLNEAFYTLQDLID---------------------------------------- 160 (265)
Q Consensus 124 ~~~~d~~l~~la~a~v~-l~~--g~~~~~eA~~~~~el~~---------------------------------------- 160 (265)
+.+||+....-...-.. +.. ..+..+.-..+|+++..
T Consensus 66 ~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl 145 (517)
T PF12569_consen 66 DRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL 145 (517)
T ss_pred HHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH
Confidence 99998874432221110 000 11234444555555311
Q ss_pred -----------------------------------------hcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--
Q psy3174 161 -----------------------------------------KYGSTP--MLVNAQVAVLIAQDKYEEAWDLLQDTAGD-- 195 (265)
Q Consensus 161 -----------------------------------------~~p~t~--~lLn~~A~~~~~~g~~eEAe~~l~~al~~-- 195 (265)
..|.+. .++.-+|-.|...|++++|..++.+|++.
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP 225 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP 225 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 012222 35678899999999999999999999998
Q ss_pred -CHHHHHHHHHHHHHcCCCCccC
Q psy3174 196 -SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 -~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
-||..+..+.++-|.|+..++.
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHH
Confidence 6778899999999999987654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00033 Score=63.56 Aligned_cols=83 Identities=13% Similarity=0.013 Sum_probs=76.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC-----
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS----- 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~----- 217 (265)
++|++|+..|.++....|.++..+-+.|.+|+++|.|+.|....+.|+.+||. ++.-|+.++..+||..++.
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999887 7789999999999998754
Q ss_pred -----CCChhhhcHHH
Q psy3174 218 -----VSPPFLFRSDE 228 (265)
Q Consensus 218 -----p~hp~~~~~~~ 228 (265)
|+++..+..+.
T Consensus 175 aLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 175 ALELDPDNESYKSNLK 190 (304)
T ss_pred hhccCCCcHHHHHHHH
Confidence 99997776654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00079 Score=47.56 Aligned_cols=66 Identities=20% Similarity=0.140 Sum_probs=57.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.++|+..++++.|.+.+.++++++|+++......|.+.... |++++|...|+.+.+..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL--GRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 46899999999999999999999999987776666666656 7899999999999999998776554
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.005 Score=59.08 Aligned_cols=187 Identities=12% Similarity=0.048 Sum_probs=123.5
Q ss_pred HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CC--hHHHHHHHHH-HHhcCCCcC-cccc--
Q psy3174 24 YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LP--EELSCIKVLA-EYLSIPSKN-GSSN-- 91 (265)
Q Consensus 24 Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~--~~l~~~~~~A-~~l~~~~~~-e~~~-- 91 (265)
|.=|++..+ .+.--+...+.++-.+--|+.+|+++.+++-+ .+ ....+-.+-+ .|+....+- .+..
T Consensus 402 ~dwcle~lk--~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 402 CDWCLESLK--ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cHHHHHHHH--HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 445555431 11222334455566667799999988555433 11 1122222222 334332221 1111
Q ss_pred ------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhc
Q psy3174 92 ------FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 92 ------~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~ 162 (265)
-.-++-++...+-+....|++|.|..-|++++..|---+ ++..|+. ...+++++|+..|-++...-
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-----ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-----EALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-----HHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 134555566666788889999999999999966433222 3333333 33488999999999887766
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
-.+..+|..+|.+|-.+.+...|.+++.++-.. +|.+|.-|+-++..-|....++
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 677888889999999999999999999999887 9999999999999999887765
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0032 Score=64.22 Aligned_cols=115 Identities=6% Similarity=-0.082 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+.-.+-.+...||++.|++++.+++..+|-+...--.++-|. ...|+.+++.+..--+....|.+...+.-+|....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~Iy--EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIY--EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHH--HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 333344455567777777777777777776663321111111 123566666666666666666666666666666667
Q ss_pred cCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCc
Q psy3174 179 QDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~e 215 (265)
+|+|..|.-++.+|++.+|+ .+.+-+.++..+|+...
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~ 259 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR 259 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence 77777777777777666444 55566666666666544
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0055 Score=58.78 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-------cC
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED--HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK-------YG 163 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d--~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~-------~p 163 (265)
|.+.-++-.+++||.++||.++|+|.|+++...++- +.+..||..+=++ +.+++|.++|++..+. .|
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l----~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL----KDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhcccch
Confidence 778888889999999999999999999999998876 5555666655544 5688999999987653 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.|..+..-+|.=+.+.++|++|..+..+++.-++
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 4677777788889999999999998888877533
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00038 Score=65.67 Aligned_cols=125 Identities=14% Similarity=0.041 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHH-------HHHHHHHH---hccccHHHHHHHHHHHHhhc
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQL-------CSAWVHIA---NNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~l-------a~a~v~l~---~g~~~~~eA~~~~~el~~~~ 162 (265)
+.+.|.+++++.++...+..|.|...+.+.+.++||+.-.-. .+.|-.-. -..|+|.+|+..|-+.....
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 789999999999999999999999999999999999865422 22333211 23389999999999999999
Q ss_pred CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHH---HHHHHHHHHcCCCCccC
Q psy3174 163 GS----TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTL---INNMVTAGRLGKGNEMS 217 (265)
Q Consensus 163 p~----t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl---~nl~~~~~~~Gk~~ea~ 217 (265)
|+ ...++-+.|.+.+++||..||...-.+|+++||..+ .--+.|...++++.++.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 344788999999999999999999999999988854 34477888889887654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0022 Score=59.36 Aligned_cols=119 Identities=9% Similarity=-0.011 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----hccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
+-.+.+-..--++...++.+.|...+.++++++|++. .+|.+.. .-+..+++++..++++.+..|.+..++
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y-----taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW 109 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNY-----TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW 109 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH-----HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence 4445554555567788999999999999999999998 4554332 222368999999999999999999999
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 170 NAQVAVLIAQDKY--EEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 170 n~~A~~~~~~g~~--eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+..+++..++|+. +++.+++.++++. |-++..+.+.+...+|+..+++
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999984 7889999999998 5558899999999999877654
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0023 Score=60.64 Aligned_cols=197 Identities=12% Similarity=0.001 Sum_probs=139.1
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHH-HHhcCCCcCc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLA-EYLSIPSKNG 88 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A-~~l~~~~~~e 88 (265)
.-.||.-.|..|+..++|.-.. .+...+..+++.|.+++.|+.+.++=-+ .|-.|...+.+. .|+....-+|
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~-~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS-EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc-CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 3578899999999997654333 3446788899999999999987433212 566677777654 5666665555
Q ss_pred c--------cccCCCHHHHHHHH-HHHHHc-CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q psy3174 89 S--------SNFGTHLEINALKI-HTYLTM-YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL 158 (265)
Q Consensus 89 ~--------~~~~~~lE~~al~v-~~~l~~-~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el 158 (265)
+ ..++.+.-.+-+.+ -+++-. .--+.|+|.+.+.+.+.|+-+-+-++.|-+-... |++++++.+.+..
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E--g~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE--GPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh--CccchHHHHHHHH
Confidence 4 12344444444432 222221 2257899999999999999987766666554444 8899999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC
Q psy3174 159 IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 159 ~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
.-.+|+.. +-+-+|.+..++..+.+|.+.+..||.+||. ++--|- .....-+++++.
T Consensus 465 L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~-~lEK~~~~~DAT 524 (564)
T KOG1174|consen 465 LIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR-LLEKSDDESDAT 524 (564)
T ss_pred HhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH-HHHhccCCCCcc
Confidence 99988765 6778999999999999999999999999776 444442 333344444444
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00047 Score=68.85 Aligned_cols=165 Identities=15% Similarity=0.017 Sum_probs=121.7
Q ss_pred HHHHHcccChhHH----hhhc-CChHHHHHHHHHHHhcCCCcCcc----cccCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy3174 50 CRSYLAQKKYKVV----LEEK-LPEELSCIKVLAEYLSIPSKNGS----SNFGTHLEINALKIHTYLTMYRNDLALKELK 120 (265)
Q Consensus 50 ~Raylalg~~~~~----l~ei-~~~~l~~~~~~A~~l~~~~~~e~----~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~ 120 (265)
.-||..+|+-.++ ..++ .+|.......+.+++..+.-++. .++. +.-+....+...+..+++..+-+.++
T Consensus 431 i~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~-sarA~r~~~~~~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYI-SARAQRSLALLILSNKDFSEADKHLE 509 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhh-hHHHHHhhccccccchhHHHHHHHHH
Confidence 4567777754322 2223 46777777778887776654432 1110 11122222223344688999999999
Q ss_pred HHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CH
Q psy3174 121 VMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SE 197 (265)
Q Consensus 121 ~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~p 197 (265)
..++++|=..-+-.+.++.++.- ++++.|...|.......|+....+|+++.+|+..|+-.+|-..+++|+.- |+
T Consensus 510 ~sl~~nplq~~~wf~~G~~ALql--ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 510 RSLEINPLQLGTWFGLGCAALQL--EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred HHhhcCccchhHHHhccHHHHHH--hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 99999998886666666666655 78999999999999999999999999999999999999999999999986 77
Q ss_pred HHHHHHHHHHHHcCCCCccC
Q psy3174 198 DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 198 dtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+.-|...++...|.++++.
T Consensus 588 ~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 588 QIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred eeeechhhhhhhcccHHHHH
Confidence 78889999999999888765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00043 Score=44.83 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA 142 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~ 142 (265)
++....++.+|..+|++|.|++.|+++++.+||++ .+|..++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~-----~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP-----EAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH-----HHHHHhh
Confidence 46778889999999999999999999999999998 6676553
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0032 Score=61.07 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
|+--+-.-..+..+.+-|++..|.+.|.+++..+|++... +.|.+|+.| +.+.+|..--+...+.+|..+..+.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL----~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL----GEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcCchHHHHHH
Confidence 3334444455889999999999999999999999988654 888899988 4589999998999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRL 210 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~ 210 (265)
-.|.|+..+.+|++|.+.++++++.||+ ++-....|...+
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999666 666777787764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0026 Score=62.57 Aligned_cols=104 Identities=13% Similarity=-0.110 Sum_probs=80.8
Q ss_pred cCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 92 FGTHLEINALKIHTYLTMYR--------NDLALKELKVMQDK--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r--------~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
.|+...+++.++.++...+. ...|.+...++... ++.......+.+.+.+.. |++++|...|+++...
T Consensus 372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~--g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK--GKTDEAYQAINKAIDL 449 (517)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHc
Confidence 37777888877777766432 34555666665554 555666666666666655 8899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.| +...++.+|.++..+|++++|.+.+.+|+.++|.
T Consensus 450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 98 5789999999999999999999999999999443
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0047 Score=57.70 Aligned_cols=168 Identities=15% Similarity=0.098 Sum_probs=81.8
Q ss_pred cHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHH-HHH------HHHHhcCCCcCcc
Q psy3174 23 NYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSC-IKV------LAEYLSIPSKNGS 89 (265)
Q Consensus 23 ~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~-~~~------~A~~l~~~~~~e~ 89 (265)
+|..||...+--.....+..-..+.|++-||..+|+|+.++++- +.++... +.+ +..|...+.. .
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~--~ 114 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI--A 114 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH--H
Confidence 56777776532222333333357899999999999999877643 1111111 110 1111110000 0
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.+-++++=+.-++-++.++.|+-..-...-... .|.+--||.+|-++... -.|+||+-+|..+.+..|.-..+=
T Consensus 115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L----qD~~EdqLSLAsvhYmR--~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL----QDTLEDQLSLASVHYMR--MHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH----hhhHHHHHhHHHHHHHH--HHHHHHHHHHHHHHhcChhhhhhH
Confidence 223455555555555555554432222211111 12233344444444433 346666666666665555544444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
..+|.|+.++.=|+=+.+.+.--+..+||
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 45566666666666665555555555444
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=52.77 Aligned_cols=125 Identities=14% Similarity=-0.082 Sum_probs=69.3
Q ss_pred HHHHHHHcccChhHHhhhc-----CChHHHH--HHHHHHHhcCCCcCcc--------cccCCCHHHHHHHHHHHHHcCCh
Q psy3174 48 YVCRSYLAQKKYKVVLEEK-----LPEELSC--IKVLAEYLSIPSKNGS--------SNFGTHLEINALKIHTYLTMYRN 112 (265)
Q Consensus 48 ~~~Raylalg~~~~~l~ei-----~~~~l~~--~~~~A~~l~~~~~~e~--------~~~~~~lE~~al~v~~~l~~~r~ 112 (265)
+.+.-+=+.|.++.+++-. +.|.-.+ .|.+|-......+.+. +.|+.+.|+..-++-+|+.+|.+
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 3455566777777555422 2222111 2334443333322222 34566677777777777777777
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 113 DLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 113 d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
..|-=.|.+++=+.|-+++.-...|=+....|| ++++-|..+|.......|.....|.|+
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 777777777766677666665444444444344 666667777777766666433344443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00038 Score=43.58 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
|...++++|.++..+|++++|+.+++++++.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3568999999999999999999999999874
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0016 Score=62.40 Aligned_cols=40 Identities=10% Similarity=-0.087 Sum_probs=35.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT 130 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~ 130 (265)
..|++.+....++.+|..+||+++|...|+++++++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 3488999999999999999999999999999999998865
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0064 Score=50.74 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
-.+...+.+-+..++.+.++..+..+.-+.|..+-..+..+|+.+.. +++.+|..+++++.+..|.++..--.+|+|+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r--~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR--GDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh--CCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34556677788888899999999988888998888888889998877 6799999999999888888888877888898
Q ss_pred HHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcC
Q psy3174 177 IAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLG 211 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~G 211 (265)
..+|+.+ =..+-.++++. +|++..-.-.+...-+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~d~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGADPDARALVRALLARAD 124 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 8888753 11222344555 7776655544444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0056 Score=48.72 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=62.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH------HHHHHHHHH
Q psy3174 137 AWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED------TLINNMVTA 207 (265)
Q Consensus 137 a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd------tl~nl~~~~ 207 (265)
+|..=.. |+.++|..+|++....-.+. ...+.++|.++..+|++++|..++++++..+|+ +-..++.+.
T Consensus 8 A~a~d~~--G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSL--GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhc--CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 4443333 88999999999998864432 347889999999999999999999999987444 445677888
Q ss_pred HHcCCCCccC
Q psy3174 208 GRLGKGNEMS 217 (265)
Q Consensus 208 ~~~Gk~~ea~ 217 (265)
..+|++.|++
T Consensus 86 ~~~gr~~eAl 95 (120)
T PF12688_consen 86 YNLGRPKEAL 95 (120)
T ss_pred HHCCCHHHHH
Confidence 9999998865
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.017 Score=56.15 Aligned_cols=194 Identities=16% Similarity=0.207 Sum_probs=130.5
Q ss_pred hHHHHHhhhhccHHHHHHHHhhccc---C----------Ch---hhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHH
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKA---T----------DP---KVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIK 75 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~---~----------~~---~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~ 75 (265)
.+.+|..|- -|++|.+.+++... . +. ........+..-.++.-|-+..+++-+ ||.+ .
T Consensus 119 ~~~lRkay~--~y~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~sgv~~G~G~f~L~lSlL-Pp~~---~ 192 (468)
T PF10300_consen 119 GYKLRKAYK--IYKECMKIIEKLKKKAKSSSPGEPDSHDSWDDDSTKPIDEFFESGVYFGFGLFNLVLSLL-PPKV---L 192 (468)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhhhhccCCCCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhC-CHHH---H
Confidence 467787774 48888887654321 0 00 011223445567789999999999976 4433 3
Q ss_pred HHHHHhcCCCcCcc-----------cccCCCHHHHHHHHH-----HHH----HcCChHHHHHHHHHHHccCCCcHHHHHH
Q psy3174 76 VLAEYLSIPSKNGS-----------SNFGTHLEINALKIH-----TYL----TMYRNDLALKELKVMQDKDEDHTLTQLC 135 (265)
Q Consensus 76 ~~A~~l~~~~~~e~-----------~~~~~~lE~~al~v~-----~~l----~~~r~d~Aek~l~~~~~~~~d~~l~~la 135 (265)
.+.+++--.++++. ++....+-.+.+++. -.+ .-...+.|++++..+++.-|++.+-.+-
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34444444445443 112223333333211 111 2446788999999999999999999999
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHh---hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHH-HHHHHHH
Q psy3174 136 SAWVHIANNVDKLNEAFYTLQDLID---KYGS-TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTL-INNMVTA 207 (265)
Q Consensus 136 ~a~v~l~~g~~~~~eA~~~~~el~~---~~p~-t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl-~nl~~~~ 207 (265)
.|.+.... |+.++|...|++... ..|. ....+--+|||++-+++|++|...+.+..+. .+-+. .-.++|+
T Consensus 273 ~gR~~~~~--g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 273 EGRLERLK--GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHh--cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 99998877 779999999998653 2232 3446788999999999999999999999876 33333 4668888
Q ss_pred HHcCCC
Q psy3174 208 GRLGKG 213 (265)
Q Consensus 208 ~~~Gk~ 213 (265)
..+|+.
T Consensus 351 ~~l~~~ 356 (468)
T PF10300_consen 351 LMLGRE 356 (468)
T ss_pred Hhhccc
Confidence 899987
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00081 Score=40.63 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.++..+|.+++.+|++++|...++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999988764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00085 Score=41.26 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3174 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 154 ~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe 186 (265)
.|++..+..|+++..++++|+++..+|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999996
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0037 Score=56.08 Aligned_cols=72 Identities=32% Similarity=0.380 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCcc
Q psy3174 146 DKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++|.+|..-|++..+.||. ++.....+|-++..||+|++|..++..+... -||.|.-+++|...+|+.+++
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 5699999999999999995 6778999999999999999999999999876 789999999999999998765
Q ss_pred C
Q psy3174 217 S 217 (265)
Q Consensus 217 ~ 217 (265)
.
T Consensus 235 ~ 235 (262)
T COG1729 235 C 235 (262)
T ss_pred H
Confidence 3
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.071 Score=53.43 Aligned_cols=120 Identities=13% Similarity=0.010 Sum_probs=95.8
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.||+..-+..+++||+..|++.+.|+..|..=...-|..+..=+.++-+.=.. +.+-.|..+++...-+.|....++.
T Consensus 680 ~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~--~~~~rAR~ildrarlkNPk~~~lwl 757 (913)
T KOG0495|consen 680 SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD--GQLVRARSILDRARLKNPKNALLWL 757 (913)
T ss_pred hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh--cchhhHHHHHHHHHhcCCCcchhHH
Confidence 47999999999999999999999999999999999999985433333332223 5789999999999999999998887
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHH--HH-HHHHHHHHHcCC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSED--TL-INNMVTAGRLGK 212 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl-~nl~~~~~~~Gk 212 (265)
..--.-++.|+.+.|+.+..+||+..|. .| +--|.+.-+-++
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 7777788999999999999999998444 33 344444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=49.30 Aligned_cols=86 Identities=16% Similarity=0.048 Sum_probs=72.3
Q ss_pred CCcHHHHHHH-HHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 127 EDHTLTQLCS-AWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 127 ~d~~l~~la~-a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
++.++.-|.+ .|+.+.. +...++..+++-+--..|..+.+-..-||+|+..|+|.+|..+|+++.+. .|-.-+-
T Consensus 6 ~~~iv~gLie~~~~al~~--~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRL--GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred cHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 4455555554 5665544 68999999999999999999999999999999999999999999998887 6667788
Q ss_pred HHHHHHHcCCCC
Q psy3174 203 NMVTAGRLGKGN 214 (265)
Q Consensus 203 l~~~~~~~Gk~~ 214 (265)
++.|+..+|.+.
T Consensus 84 lA~CL~~~~D~~ 95 (160)
T PF09613_consen 84 LALCLYALGDPS 95 (160)
T ss_pred HHHHHHHcCChH
Confidence 899999999874
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0013 Score=63.15 Aligned_cols=69 Identities=9% Similarity=0.052 Sum_probs=55.5
Q ss_pred cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 125 KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM---LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 125 ~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~---lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+|++....+..+... ...|+|++|...|++.....|++.. .++++|+||.++|+++||...+++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL--~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSL--FSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677774333333322 2348999999999999999998774 5999999999999999999999999997
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0019 Score=41.66 Aligned_cols=38 Identities=13% Similarity=-0.066 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNM 204 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~ 204 (265)
.++..+|.++..+|++++|+.+++++++. ||+....++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45667788888888888888888888887 555555554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.072 Score=48.09 Aligned_cols=102 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCC--
Q psy3174 93 GTHLEINALKIHTYLTM-YRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGS-- 164 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~-~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~-- 164 (265)
..-..+...++.+|... |+++.|.+.|+++.++ .++.+ ......+.+++ ...++|++|..+|+++...+-.
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 33445566666667666 6777777777777664 12211 11111111111 2235677777777776654321
Q ss_pred -C---H-HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 165 -T---P-MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 165 -t---~-~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+ . ..+....+|++.+|++..|...+.+..+.
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1 1 13344566777777777777777776655
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=57.24 Aligned_cols=101 Identities=9% Similarity=-0.029 Sum_probs=83.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHH-H-HHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLT-Q-LCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD 180 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~-~-la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g 180 (265)
+-..+.-|+++.|...|.+++.++|.+.+. . -..++..+ ++|++|+.--.+..+..|+=+..++-+|+++..+|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~----~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL----GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHH----hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 446778899999999999999999876543 2 22244432 67999999999999999988999999999999999
Q ss_pred CHHHHHHHHHHHhcCCH---HHHHHHHHHH
Q psy3174 181 KYEEAWDLLQDTAGDSE---DTLINNMVTA 207 (265)
Q Consensus 181 ~~eEAe~~l~~al~~~p---dtl~nl~~~~ 207 (265)
+|+||...+.+.|+.+| -...++.-++
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999944 4667777666
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.034 Score=55.60 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=88.3
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
++|++..+..-.+++-++.|..+.|+..+.++++--|.+-+.=-...|+. ..+ +| ...+.++..++-.+|.+|.
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le-~~~-~r----kTks~DALkkce~dphVll 821 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLE-PRP-QR----KTKSIDALKKCEHDPHVLL 821 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhc-cCc-cc----chHHHHHHHhccCCchhHH
Confidence 35778888888888888888888888888888887777764333333331 111 12 3345556666677788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
..|..+-...+++.|.+.+.+|+.+ +.|+.+++-......|...
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999998 5559999999999999654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.037 Score=45.35 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=65.2
Q ss_pred ccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHcCC--CC
Q psy3174 146 DKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE---D---TLINNMVTAGRLGK--GN 214 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p---d---tl~nl~~~~~~~Gk--~~ 214 (265)
|+|++|...|+++-.++|- +......++.++...|+|++|...+++-+.+|| + ++.-.+.+...+.. ..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~ 103 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQ 103 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHh
Confidence 8899999999999999993 566778899999999999999999999999944 4 44444544444433 00
Q ss_pred ccCCCChhhhcHHHHHHHHHHHHhhc
Q psy3174 215 EMSVSPPFLFRSDETTATLDACGLQS 240 (265)
Q Consensus 215 ea~p~hp~~~~~~~~~~~FD~~~~~~ 240 (265)
..+...-........-..|.+++.+|
T Consensus 104 ~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 104 SFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred hhcccccCcHHHHHHHHHHHHHHHHC
Confidence 00001112222344556666666666
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.042 Score=49.11 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH-----HHHHHHHHHH----hccccHHHHHHHHHHHHhhcC
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT-----QLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~-----~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p 163 (265)
|-+...+..+++++.+.+++++|.....+.+..-|.|.-. ..+++++--. .-+....+|+.-|+++.+++|
T Consensus 68 ~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 68 PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 3456889999999999999999999999999987766533 2222222111 222556789999999999999
Q ss_pred CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCccC---
Q psy3174 164 STPMLV-----------------NAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNEMS--- 217 (265)
Q Consensus 164 ~t~~lL-----------------n~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ea~--- 217 (265)
+|.-.- -..|--|++.|.|.-|..-+++.++. -.+.|.-+...+..+|-.+++-
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 763321 23566788999999999999999987 3347889999999999987653
Q ss_pred -------CCChhhhcH
Q psy3174 218 -------VSPPFLFRS 226 (265)
Q Consensus 218 -------p~hp~~~~~ 226 (265)
|++||.++-
T Consensus 228 ~vl~~N~p~s~~~~~~ 243 (254)
T COG4105 228 KVLGANYPDSQWYKDA 243 (254)
T ss_pred HHHHhcCCCCcchhhh
Confidence 999988764
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.027 Score=55.26 Aligned_cols=144 Identities=9% Similarity=0.009 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIAN---NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~---g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
+.-+..+++.|.+.+|.=.|..+...+|+|. +||..|.. ..++=+.|+.-+++..+..|....+|-.+|++|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha-----eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA-----EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH-----HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 4457789999999999999999999999999 89988873 236777899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhcC-----------------------CHHHHHHHHHHHHHcCCCCccCCCChhhhcH----HHH
Q psy3174 177 IAQDKYEEAWDLLQDTAGD-----------------------SEDTLINNMVTAGRLGKGNEMSVSPPFLFRS----DET 229 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~-----------------------~pdtl~nl~~~~~~~Gk~~ea~p~hp~~~~~----~~~ 229 (265)
.-+|.=.+|..+|...+.. +++.+.++-..+...++.... ...|.+..- --.
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhc
Confidence 9999999999999998764 222333333322222221100 022333332 347
Q ss_pred HHHHHHHHhhccccCCCCCc
Q psy3174 230 TATLDACGLQSNSESTPRDS 249 (265)
Q Consensus 230 ~~~FD~~~~~~~~~~~~l~~ 249 (265)
..+|||.+.-|...+..-..
T Consensus 443 s~efdraiDcf~~AL~v~Pn 462 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPN 462 (579)
T ss_pred chHHHHHHHHHHHHHhcCCc
Confidence 88999999999877544433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.029 Score=50.64 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHH---hcc-ccHHHHHHHHHHHHhhcC---C---CHHH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLTQLCSAWVHIA---NNV-DKLNEAFYTLQDLIDKYG---S---TPML 168 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~~la~a~v~l~---~g~-~~~~eA~~~~~el~~~~p---~---t~~l 168 (265)
...+.+|... +++.|...|+++.++- ...-..+.|..+.+++ ... +++++|...|+++.+.+. . ....
T Consensus 79 ~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 79 EEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 3344454444 6666666666665531 0011112222223222 233 689999999999876543 1 1236
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC-------CH---HHHHHHHHHHHHcCCCCc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD-------SE---DTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~-------~p---dtl~nl~~~~~~~Gk~~e 215 (265)
+..+|.++..+|+|++|..++++.... .. +.+.+.+.|....|+...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~ 214 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVA 214 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHH
Confidence 788999999999999999999998764 11 355677888888887643
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.024 Score=46.82 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
.+...+.+.+..++++.++..+..+.-+-|...-..+..+|+.+.. |++.||..+|+++.+..+.+|..--.+|+|+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r--g~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIAR--GNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHc--CCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 3445566677788999999999888888888888888889998877 67999999999999888888888888889999
Q ss_pred HcCCHH
Q psy3174 178 AQDKYE 183 (265)
Q Consensus 178 ~~g~~e 183 (265)
.+|+..
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.098 Score=47.19 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3174 111 RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 111 r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~ 190 (265)
.+..|-=+|..+.+.-+.-+++++.++-+.+.. +||+||..+.+++.++.+..|..|.++-+|-..+|+-+|+.+-+.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~--~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL--GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHh--cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 345555567777777778888888888888866 789999999999999999889988888888888998888776555
Q ss_pred HHhcC-CHH
Q psy3174 191 DTAGD-SED 198 (265)
Q Consensus 191 ~al~~-~pd 198 (265)
.-+.. ||+
T Consensus 266 ~QLk~~~p~ 274 (299)
T KOG3081|consen 266 SQLKLSHPE 274 (299)
T ss_pred HHHHhcCCc
Confidence 44444 665
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.089 Score=54.53 Aligned_cols=121 Identities=14% Similarity=-0.007 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC---cHH--HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH----
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDED---HTL--TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP---- 166 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d---~~l--~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~---- 166 (265)
..++..++.++...|+++.|...+.++..+... ... ..............|..+.|.....+.....+...
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 344555666777777777777777776553211 110 00000000111123556666666555443221111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CH---HHHHHHHHHHHHcCCCCcc
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SE---DTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~p---dtl~nl~~~~~~~Gk~~ea 216 (265)
..+..+|.++..+|++++|...+.+++.. .. .++..++.++..+|+..++
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 12457888999999999999999999875 22 2667889999999998654
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.026 Score=53.25 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
+-|...++.||+++++++.|.+.-.++++.+++++-..---+-..+.. +.|+.|...|+++.+..|++-.+-+-+..|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~--~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL--GEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345667788999999999999999999999999976655444444444 669999999999999999998899999989
Q ss_pred HHHcCCHHHH-HHHHHHHhcC
Q psy3174 176 LIAQDKYEEA-WDLLQDTAGD 195 (265)
Q Consensus 176 ~~~~g~~eEA-e~~l~~al~~ 195 (265)
.-+..++.+. .+++...+..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 8888888877 4566666654
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.03 Score=51.44 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
++-+.+-|...-+++..++..+.+.- ++...-+++-++.+.... |++++|..-|++..+-.+-.|.+-.++|.||.
T Consensus 114 ~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllyke--gqyEaAvqkFqaAlqvsGyqpllAYniALaHy 189 (459)
T KOG4340|consen 114 VLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKE--GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY 189 (459)
T ss_pred HHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecc--ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence 34444556666777888888777763 233333344444553333 78999999999999998988888889999999
Q ss_pred HcCCHHHHHHHHHHHhcC
Q psy3174 178 AQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~ 195 (265)
+.|.+..|.++..+..++
T Consensus 190 ~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIER 207 (459)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 999999999999998886
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0028 Score=37.88 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
..+..+|.+++.+|+|++|...++++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46788999999999999999999999987653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.086 Score=48.10 Aligned_cols=129 Identities=13% Similarity=0.040 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+++.+....++.+|+.+|+.+.|+.++..+-.-..+.-... ..+|+.+...-....+.-. ++.-....|++.....-+
T Consensus 165 ~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~~~-l~~~~aadPdd~~aa~~l 242 (304)
T COG3118 165 PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEIQD-LQRRLAADPDDVEAALAL 242 (304)
T ss_pred cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCHHH-HHHHHHhCCCCHHHHHHH
Confidence 77889999999999999999999999988744333332212 3456655532222222222 233345679999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCccCCCChhhhcHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKGNEMSVSPPFLFRSDET 229 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~~ea~p~hp~~~~~~~~ 229 (265)
|..+...|+.++|.+.|-..+.+ ++..---++.+....| |.||.+..+-.+
T Consensus 243 A~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g------~~Dp~~~~~RRk 298 (304)
T COG3118 243 ADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG------PADPLVLAYRRK 298 (304)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC------CCCHHHHHHHHH
Confidence 99999999999999999888876 5555556666666666 566766665443
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.036 Score=52.35 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=78.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHcc-------CCCc--H-HHHHHHHHHHHHh---ccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDK-------DEDH--T-LTQLCSAWVHIAN---NVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~-------~~d~--~-l~~la~a~v~l~~---g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
+-.|.+.|++.+|.+.|+++..+ +++. . ....-.+++|++. -.++|.+|...-.+.....|.+...|
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 44789999999999999998774 1111 1 1111113333331 11679999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAG 208 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~ 208 (265)
.-.|-+++.+|+|+.|...++++++..|+ +-.-++.|-.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999444 4444454443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.023 Score=48.90 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=64.2
Q ss_pred ccccHHHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCcc
Q psy3174 144 NVDKLNEAFYTLQDLI-DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 144 g~~~~~eA~~~~~el~-~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~~ea 216 (265)
.-|++.||...|++.. ..+..++.+|.|+|.+.+..+++.+|...|+...+- .||+.--++.++..+|++.++
T Consensus 101 elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 101 ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 3388999999999975 457789999999999999999999999999999987 677777889999999998754
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.13 Score=51.27 Aligned_cols=100 Identities=11% Similarity=-0.048 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.=|.-..+.++-...+|++|.|.|++++.|++|+.-..--.+++.+-. +.++-..+.-.++.+..|.-...+.+.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm--Rd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM--RDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 566778888888999999999999999999999999974333333443333 568888888888899999888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~ 194 (265)
|+++...|++..|.+++.+-.+
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876544
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.066 Score=55.01 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=87.5
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
+||+.+-..++.+.++.++||.|+|-+.+...-....++.+|.-+. .+.....+++++|+.+|+.+.+++|. -.++.
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l--~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~ 114 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFL--QNVYRDLGKLDEAVHLYERANQKYPS-EELLY 114 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHH--HHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence 5789999999999999999999999988877766555554443332 22333448899999999999999999 77899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTA 207 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~ 207 (265)
++.-||.+-+.|.+=...-.+.... +|-.+++-+.+.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 9999999999998866655555444 666666654433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.007 Score=36.39 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDH 129 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~ 129 (265)
++.+.++.+|..+|++++|.+.|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 678889999999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.056 Score=56.01 Aligned_cols=121 Identities=14% Similarity=0.008 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-cH----HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC---C--
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDED-HT----LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG---S-- 164 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-~~----l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p---~-- 164 (265)
..++.+..+.++...|+++.|...++++++..+. .. .+....+.+.. ..|++.+|...+++...... +
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~--~~G~~~~A~~~~~~al~~~~~~g~~~ 528 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH--CKGELARALAMMQQTEQMARQHDVYH 528 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhhhcchH
Confidence 3466677888999999999999999999874332 22 11122223322 34889999999999865422 1
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C---H-H--HHHHHHHHHHHcCCCCccC
Q psy3174 165 -TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----S---E-D--TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 165 -t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~---p-d--tl~nl~~~~~~~Gk~~ea~ 217 (265)
....++.+|.++..+|++++|+..+.++++. . + . +..+++.+....|+.+++.
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 593 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE 593 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 1336788999999999999999999999886 1 1 1 3346778888889987653
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.026 Score=46.02 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=59.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHH------HHHHHHHHHHHcCCCCcc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-SED------TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pd------tl~nl~~~~~~~Gk~~ea 216 (265)
+|+++.|+..|.+.....|..+..+|+.|-++..||+.++|.+.+.+|+++ .|- ....-+.++..+|+.+.+
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 378999999999999999988889999999999999999999999999988 332 345667788888887654
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.024 Score=57.04 Aligned_cols=125 Identities=18% Similarity=0.061 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHH----------HH-HH--------------HHHHhcccc
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQL----------CS-AW--------------VHIANNVDK 147 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~l----------a~-a~--------------v~l~~g~~~ 147 (265)
...+|...-.+.||+..|..+.|+.+.++-++-+||+.+--+ -+ || -.+...+++
T Consensus 421 ~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 421 FERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKD 500 (777)
T ss_pred HHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchh
Confidence 678888999999999999999999999999996666553310 00 11 111233467
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 148 LNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 148 ~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
++++...++.-....|-.+..+.+.|.|.++.+++..|...+..+... |.+...|+.+.+..+|+..+++
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 888888888888888988889999999999999999999999999998 4457889999999999987654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.12 Score=49.93 Aligned_cols=120 Identities=13% Similarity=-0.052 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHH---ccCCCcHHHHHHHHHHHHHh---c----cccHHHHHHHHHHHHhhcCC
Q psy3174 98 INALKIHTYLTMYR---NDLALKELKVMQ---DKDEDHTLTQLCSAWVHIAN---N----VDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 98 ~~al~v~~~l~~~r---~d~Aek~l~~~~---~~~~d~~l~~la~a~v~l~~---g----~~~~~eA~~~~~el~~~~p~ 164 (265)
..++++.-.+..+- .+.|..++.+++ +++|+.+...-..||..+.. | .....+|...-+...+..|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44677766655443 456777899999 99999998887777777662 2 24466788888999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
++..+-.+|.+....|+++.|...+++|+..+|+ ++.-.+.+..+.|+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999554 7778888999999987654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0099 Score=35.40 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDH 129 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~ 129 (265)
++..+.++.++..+|+++.|.+.++++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3678889999999999999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.11 Score=47.24 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=72.2
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcC
Q psy3174 119 LKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD---KYEEAWDLLQDTAGD 195 (265)
Q Consensus 119 l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g---~~eEAe~~l~~al~~ 195 (265)
++..+..+|.+.-.=.-++-+++.. +++.+|..-|++..+..|+++..+-+.|.+++.+. .-.+|..++.+++..
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 4444456788773222222233323 78999999999999999999999889998888765 467899999999988
Q ss_pred ---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 196 ---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 ---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|+..++-|+.-+-..|+..++.
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~ 247 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAA 247 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHH
Confidence 5558888888888899887654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.051 Score=44.88 Aligned_cols=83 Identities=17% Similarity=0.057 Sum_probs=69.7
Q ss_pred HHHHHHH-HHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHH
Q psy3174 130 TLTQLCS-AWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMV 205 (265)
Q Consensus 130 ~l~~la~-a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~ 205 (265)
++.-|.+ .|+.+.. +.+.++..+.+-+--..|.++.+----+|+|+..|+|.||..++++..+. -|-.-+-+++
T Consensus 9 iv~gLi~~~~~aL~~--~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 9 LLGGLIEVLMYALRS--ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 3443333 5666654 88999999999999999999998888899999999999999999999887 3666788899
Q ss_pred HHHHcCCCC
Q psy3174 206 TAGRLGKGN 214 (265)
Q Consensus 206 ~~~~~Gk~~ 214 (265)
|...+|.+.
T Consensus 87 CL~al~Dp~ 95 (153)
T TIGR02561 87 CLNAKGDAE 95 (153)
T ss_pred HHHhcCChH
Confidence 999999875
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0091 Score=36.87 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.++++|.++.++|+|++|.++++++|..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999998764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.06 Score=46.40 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHH---HHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLC---SAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la---~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
..++..+...|++|.|+..++.++...-|+.+..++ .+.|-+.+ +++++|....+-..+. ++.+......|.++
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~--~k~D~AL~~L~t~~~~-~w~~~~~elrGDil 169 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ--KKADAALKTLDTIKEE-SWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhccccc-cHHHHHHHHhhhHH
Confidence 345778888999999999999999877777665444 45565555 7799999988766544 56777788899999
Q ss_pred HHcCCHHHHHHHHHHHhcC
Q psy3174 177 IAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~ 195 (265)
+.+|+-.+|...+.++++.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 170 LAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHcCchHHHHHHHHHHHHc
Confidence 9999999999999999998
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0071 Score=58.47 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH-hhcCC---CH----
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI-DKYGS---TP---- 166 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~-~~~p~---t~---- 166 (265)
-.|+.-..|..|+.+..+..+..+.+.+..+..|+....+--+-...+. |++..|.+..--.. .++|. ||
T Consensus 205 k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~--gn~~kA~KlL~~sni~~~~g~~~T~q~~~ 282 (696)
T KOG2471|consen 205 KLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAH--GNHPKAMKLLLVSNIHKEAGGTITPQLSS 282 (696)
T ss_pred chhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHh--cchHHHHHHHHhcccccccCccccchhhh
Confidence 4567777889999999999999999999998888876655555555555 67888888776542 33332 43
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhc-C--------------------CHHHHHHHHHHHHHcCCCCccC
Q psy3174 167 -MLVNAQVAVLIAQDKYEEAWDLLQDTAG-D--------------------SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 167 -~lLn~~A~~~~~~g~~eEAe~~l~~al~-~--------------------~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
...|++|++|.++|+|.-+.-++.+|+. . .-+++.|.++.+.|.|||-.++
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Af 355 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAF 355 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHH
Confidence 3459999999999999999999999995 1 3457899999999999998766
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.061 Score=52.34 Aligned_cols=121 Identities=13% Similarity=0.086 Sum_probs=93.8
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc----cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQD----KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~----~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t 165 (265)
..||++.=-++..++++...|+++.|.+.|.++.+ |.+=+.+..-=.+|..+.. .+|++|...|.++.+...|+
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~--~~w~~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ--HDWEEAAEYFLRLLKESKWS 338 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH--chHHHHHHHHHHHHhccccH
Confidence 45899999999999999999999999999998764 2333444444458888888 67999999999999999997
Q ss_pred HH-HHHHHHHHHHHcCCH-------HHHHHHHHHHhcC--------CH-H-HHHHHHHHHHHcCC
Q psy3174 166 PM-LVNAQVAVLIAQDKY-------EEAWDLLQDTAGD--------SE-D-TLINNMVTAGRLGK 212 (265)
Q Consensus 166 ~~-lLn~~A~~~~~~g~~-------eEAe~~l~~al~~--------~p-d-tl~nl~~~~~~~Gk 212 (265)
.. -....|+|+...|+. ++|..++.++-.. -| | ...-.+.-+...++
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~~ 403 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQAK 403 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcCC
Confidence 77 457889999999999 8888888777543 22 3 34455555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.069 Score=53.20 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=102.5
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.+|+..|.+++.+..+..+||.++|-..++..+..|..+.++==..+.+.-.+ .+|.+|..-|+.+....|++..+|-
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--K~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--KKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788899999999999999999999999999999999987755555554333 8899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSEDT---LINNMVTAGRLGKGNE 215 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pdt---l~nl~~~~~~~Gk~~e 215 (265)
.++....|+|+|+-....=.+.++..|.- .+-.++.....|....
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888886653 3445555555665543
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.032 Score=55.01 Aligned_cols=119 Identities=15% Similarity=0.046 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH-HHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV-NAQ 172 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL-n~~ 172 (265)
++++.++.-+..+...+.+++|.+...+++...||++-..-.- .|++.+ .++|++|+++.+.-.-. .+.... .-.
T Consensus 10 ~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cK-vValIq-~~ky~~ALk~ikk~~~~--~~~~~~~fEK 85 (652)
T KOG2376|consen 10 DNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCK-VVALIQ-LDKYEDALKLIKKNGAL--LVINSFFFEK 85 (652)
T ss_pred ccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhh-Hhhhhh-hhHHHHHHHHHHhcchh--hhcchhhHHH
Confidence 4668888999999999999999999999999987776443332 233332 37899999666543211 111111 578
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|.|+.++++.+||...+. .++. ++-++.--+-++..+|+.++++
T Consensus 86 AYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydeal 130 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEAL 130 (652)
T ss_pred HHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHH
Confidence 899999999999999998 6666 4447777788999999988765
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.051 Score=46.28 Aligned_cols=85 Identities=11% Similarity=0.025 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHhcC-------CH---HHHHHHHHHHHHcCCCC
Q psy3174 148 LNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY---EEAWDLLQDTAGD-------SE---DTLINNMVTAGRLGKGN 214 (265)
Q Consensus 148 ~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~---eEAe~~l~~al~~-------~p---dtl~nl~~~~~~~Gk~~ 214 (265)
++.|...++....+.|.++..|+..|.+++.+.++ +|+..++++|.++ +| +++.|++.++..+|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~-- 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF-- 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--
Confidence 56788888888889999999999999988888666 5677777777664 44 589999999999985
Q ss_pred ccCCCChhhhcHHHHHHHHHHHHhhcc
Q psy3174 215 EMSVSPPFLFRSDETTATLDACGLQSN 241 (265)
Q Consensus 215 ea~p~hp~~~~~~~~~~~FD~~~~~~~ 241 (265)
++-+..+.+..|++....|.
T Consensus 85 -------l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 85 -------LTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp -------H---HHHHHHHHHHHHHHHH
T ss_pred -------hcCChHHHHHHHHHHHHHHH
Confidence 33334555666666666665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.7 Score=42.29 Aligned_cols=173 Identities=15% Similarity=0.083 Sum_probs=87.0
Q ss_pred hhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHH
Q psy3174 18 SYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLE 97 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE 97 (265)
.|--|.|.++.+...... .++....++.+-+-..+-++|..+.+++-+ +++-+-. ..+.|
T Consensus 500 ~f~ngd~dka~~~ykeal-~ndasc~ealfniglt~e~~~~ldeald~f-------~klh~il------------~nn~e 559 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEAL-NNDASCTEALFNIGLTAEALGNLDEALDCF-------LKLHAIL------------LNNAE 559 (840)
T ss_pred eeecCcHHHHHHHHHHHH-cCchHHHHHHHHhcccHHHhcCHHHHHHHH-------HHHHHHH------------HhhHH
Confidence 366788888887753222 222234455555555566777776655521 1111111 12334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCC--CcHHHHHHHHHH--------------------------------HHHh
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDE--DHTLTQLCSAWV--------------------------------HIAN 143 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d~~l~~la~a~v--------------------------------~l~~ 143 (265)
.++.++-||..+.++..|...|-++..+=| +.++..|+.-|- ++-+
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 444445555555555555555544444322 223333332221 1212
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
.=+++|+.+|++..-..|.-..--...|.|+.+-|+|..|.+++++.-.+ +-|.|--|..++.-+|-
T Consensus 640 --qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 640 --QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred --HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 22455666666665555543333334666777777777777777766665 44455555555555554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.018 Score=34.41 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDH 129 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~ 129 (265)
+..+.++++|..+|++++|.+.|+++++++||+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 567889999999999999999999999988863
|
... |
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.064 Score=55.83 Aligned_cols=100 Identities=16% Similarity=0.051 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|.+.++..-++++|...||+.-|.|.+.++..++|+++-.+--.|-+.... |+|.+|...++++...+..-....+++
T Consensus 593 PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~--GkYkeald~l~~ii~~~s~e~~~q~gL 670 (1238)
T KOG1127|consen 593 PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN--GKYKEALDALGLIIYAFSLERTGQNGL 670 (1238)
T ss_pred chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 888899999999999999999999999999999999987776666665555 779999999999888776555577777
Q ss_pred HHHHHHc-------CCHHHHHHHHHHHhc
Q psy3174 173 VAVLIAQ-------DKYEEAWDLLQDTAG 194 (265)
Q Consensus 173 A~~~~~~-------g~~eEAe~~l~~al~ 194 (265)
|-|+++. |-+-.|.++++++++
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777764 334444445554444
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=38.27 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCccCCCChhhhcHH
Q psy3174 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED-----TLINNMVTAGRLGKGNEMSVSPPFLFRSD 227 (265)
Q Consensus 153 ~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd-----tl~nl~~~~~~~Gk~~ea~p~hp~~~~~~ 227 (265)
.-+++.....|+++.....+|.+++..|++++|.+.+.+++..+++ .---++.+...+| |.||.+..+-
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg------~~~plv~~~R 82 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG------PGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-------TT-HHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC------CCChHHHHHH
Confidence 3456667788999999999999999999999999999999998433 4456677777777 5689888876
Q ss_pred HHH
Q psy3174 228 ETT 230 (265)
Q Consensus 228 ~~~ 230 (265)
.+-
T Consensus 83 RkL 85 (90)
T PF14561_consen 83 RKL 85 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.01 Score=35.01 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+..+|+|+..+|++++|...+++.++.+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3556788888888888888888887776654
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.078 Score=48.78 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=49.5
Q ss_pred HhhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 159 IDKYG--STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 159 ~~~~p--~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+.-| .+...+++.|++..+.|.|++|..-++.|++. +|-+..|++.+....|....++
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence 34445 47778999999999999999999999999998 9999999988888888765543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.027 Score=33.13 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
+++.++.++..+|+++.|.+.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444445555555555555555555444443
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.7 Score=42.55 Aligned_cols=192 Identities=15% Similarity=0.049 Sum_probs=104.5
Q ss_pred hHHHHHhhhhccHHHHHHHHhhccc-------CChhh------hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHH
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKA-------TDPKV------LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLA 78 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~-------~~~~~------~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A 78 (265)
|.+|+...-.|-|.+|+++..++-. .+... +......+..|.+-.|.+..++.+| .-.-
T Consensus 279 l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i--------~dm~ 350 (629)
T KOG2300|consen 279 LVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEI--------VDMK 350 (629)
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH--------HHHH
Confidence 5678888889999999987432211 11000 2223333445566666776666654 1111
Q ss_pred HHhc-CCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-c--HHHHHHHHHHHHHhccccHHHHHHH
Q psy3174 79 EYLS-IPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED-H--TLTQLCSAWVHIANNVDKLNEAFYT 154 (265)
Q Consensus 79 ~~l~-~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-~--~l~~la~a~v~l~~g~~~~~eA~~~ 154 (265)
++.. .++.- -.-.-+.-+..++++--+.-|-++.|+..+..+.+.-+. + ..+++-.|-+++.. ++-++-+.+
T Consensus 351 ~w~~r~p~~~--Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~--~~~ed~y~~ 426 (629)
T KOG2300|consen 351 NWCTRFPTPL--LLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRI--GDAEDLYKA 426 (629)
T ss_pred HHHHhCCchH--HHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHh--ccHHHHHHH
Confidence 1111 11000 000113344556666666778889999888888764332 2 22333333343433 556666666
Q ss_pred HHHHHhh--cCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHH--------HHHHHHHHHHHcCCCCc
Q psy3174 155 LQDLIDK--YGS-TPM----LVNAQVAVLIAQDKYEEAWDLLQDTAGD-SED--------TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 155 ~~el~~~--~p~-t~~----lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pd--------tl~nl~~~~~~~Gk~~e 215 (265)
.+-+... ++. +.. ++...|.-.+.++++.||...+.+.++. +.+ .|.-|+-+..-.|+..+
T Consensus 427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~e 503 (629)
T KOG2300|consen 427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVE 503 (629)
T ss_pred HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 6666543 231 222 3445566778899999999999999887 433 23344555555666544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.061 Score=47.63 Aligned_cols=97 Identities=6% Similarity=-0.028 Sum_probs=77.8
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccC-CCChhhh
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTAGRLGKGNEMS-VSPPFLF 224 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk~~ea~-p~hp~~~ 224 (265)
+....|-..|.++....|.-...+.-++..+-+-|+++.|...+.+.++++|+-..--++=...+|+.+... |-..|
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p~~pP~aY-- 86 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETPEKPPSAY-- 86 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCCCCCchHH--
Confidence 456777788888888888777788888888999999999999999999999997776667777889876544 44345
Q ss_pred cHHHHHHHHHHHHhhcccc-CCCCC
Q psy3174 225 RSDETTATLDACGLQSNSE-STPRD 248 (265)
Q Consensus 225 ~~~~~~~~FD~~~~~~~~~-~~~l~ 248 (265)
++..||.++++|+-. |.+|+
T Consensus 87 ----Ve~LFD~~Ae~Fd~~LVdkL~ 107 (287)
T COG4976 87 ----VETLFDQYAERFDHILVDKLG 107 (287)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999866 66665
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.14 Score=43.71 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHhc---c---ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC--
Q psy3174 112 NDLALKELKVMQDKDEDH--TLTQLCSAWVHIANN---V---DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDK-- 181 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~--~l~~la~a~v~l~~g---~---~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~-- 181 (265)
++.|.+.+......+|.+ .|+.=+.+.+.+++- . .-+++|..=|+++....|+....+.++|.+++.+++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 677888888877777774 566777777777632 1 347788888888889999999999999999999887
Q ss_pred ---------HHHHHHHHHHHhcCCHH
Q psy3174 182 ---------YEEAWDLLQDTAGDSED 198 (265)
Q Consensus 182 ---------~eEAe~~l~~al~~~pd 198 (265)
|++|...+++|.+.+|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66666677776666665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.024 Score=33.82 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.++..+|.++..+|++++|...++++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3677899999999999999999999987644
|
... |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.04 Score=30.59 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
..++.+|.+++.+|++++|...++++++.+|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567899999999999999999999987644
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.5 Score=40.81 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=73.1
Q ss_pred hhHHHHHhhhhccHHHHHHHHhh-cccCCh-hhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCc
Q psy3174 11 ELFDVRNSYYLGNYQQCIKEGQR-LKATDP-KVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 11 elf~vr~~fy~G~Y~~~i~~~~~-~~~~~~-~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e 88 (265)
-|.-.|..+-.|+|.+|+...+. +....+ ..+.-....++|.++.+|+++..+..++.+.-..+...
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~----------- 160 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAI----------- 160 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHH-----------
Confidence 46677889999999999998643 333333 34666777889999999999987775411111111110
Q ss_pred ccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHH
Q psy3174 89 SSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCS 136 (265)
Q Consensus 89 ~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~ 136 (265)
..-+++-+++..|+-++|++.|.++++.+++....++..
T Consensus 161 ---------~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lq 199 (207)
T COG2976 161 ---------VAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQ 199 (207)
T ss_pred ---------HHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHH
Confidence 012344599999999999999999999987766555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.6 Score=34.30 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=83.1
Q ss_pred HHHHHHHH-HHHHcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC-CHHHHHH
Q psy3174 97 EINALKIH-TYLTMYRNDLALKELKVMQDKDED---HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS-TPMLVNA 171 (265)
Q Consensus 97 E~~al~v~-~~l~~~r~d~Aek~l~~~~~~~~d---~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~-t~~lLn~ 171 (265)
........ ++..+++++.|...+.+++..++. ........... ....+++++|...+.+.....+. ....+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (291)
T COG0457 130 LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL--LEALGRYEEALELLEKALKLNPDDDAEALLN 207 (291)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH--HHHhcCHHHHHHHHHHHHhhCcccchHHHHH
Confidence 33444444 899999999999999999776652 22111221111 22347899999999999999888 6888899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGDSE---DTLINNMVTAGRLG 211 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~~p---dtl~nl~~~~~~~G 211 (265)
++.++...+++++|...+..++...| ..+..++......|
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 99999999999999999999999854 45666666666444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.56 Score=42.38 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=67.9
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
....+.+..+.|++.|+++.+-..-..-..++.|.+.... +++.+-|..+|+.....+|.++..+..-..-++..|+.+
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~ 87 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDIN 87 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHH
Confidence 4445566699999999999865444443344445554433 356667999999999999999988888888889999999
Q ss_pred HHHHHHHHHhcC
Q psy3174 184 EAWDLLQDTAGD 195 (265)
Q Consensus 184 EAe~~l~~al~~ 195 (265)
.|..++++++..
T Consensus 88 ~aR~lfer~i~~ 99 (280)
T PF05843_consen 88 NARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.086 Score=45.96 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHhhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTP-----MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~-----~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
|.|.+|..-|.++.+.+|.++ .++.+.|+|.+++++|+.|...-.+|++++|. .|.--+.++..+.|+++++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHH
Confidence 678888888888888888542 25667888888888888888888888888664 4555566777776666654
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.33 Score=42.43 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=74.3
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCc------HHH-HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 105 TYLTMYRNDLALKELKVMQDKDEDH------TLT-QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~~~d~------~l~-~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
-+...|.+.+|.+-|..++++-|.- ++. +-|-+.+.+ ++++.|+.---+..+..|.....|-..|-+|-
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl----~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL----RKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh----hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 5677899999999999999987653 222 333444433 67999999888899999988888888999999
Q ss_pred HcCCHHHHHHHHHHHhcCCHHH
Q psy3174 178 AQDKYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~~pdt 199 (265)
++.+|++|...|.+.++.+|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 9999999999999999986653
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.26 Score=44.70 Aligned_cols=117 Identities=14% Similarity=0.066 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH----hhcC--CCHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI----DKYG--STPMLVNA 171 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~----~~~p--~t~~lLn~ 171 (265)
++..+-+++.++.+-.-...++++.+-+ |..+...-+++.+.+-- |..+-|...|++.- .... ......-+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~--GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI--GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 6778889999999999999999999977 55676666666666655 66888888888543 2222 23445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.|.+|+-+.+|.+|...+.+.+.. +|-..-|.+-|...+|+..+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 889999999999999999999988 4445669999999999988765
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.1 Score=48.56 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHH---------------------------
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK---DEDHTLTQLCSAWVHIA--------------------------- 142 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~---~~d~~l~~la~a~v~l~--------------------------- 142 (265)
|++-=.+.....-.+..+..+.|+++..+++.. -+.+-..++..||+|+-
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 554445555556667788899999999888772 23444445555555543
Q ss_pred ------hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcC
Q psy3174 143 ------NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLG 211 (265)
Q Consensus 143 ------~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~G 211 (265)
.-.+++++|-.+++.+..++..+..++...|..++.+.+-++|..+|.+||+- |-+++.-.+.+--..|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 22356778888888888999999999999999999999999999999999985 7788888888888888
Q ss_pred CCCcc---C----CCChhhhcH--------------HHHHHHHHHHHhh
Q psy3174 212 KGNEM---S----VSPPFLFRS--------------DETTATLDACGLQ 239 (265)
Q Consensus 212 k~~ea---~----p~hp~~~~~--------------~~~~~~FD~~~~~ 239 (265)
.++-. + ..||-=.++ ...+..|.|+++.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 87641 1 455432222 2367889998874
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.9 Score=44.41 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHh-----------
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLID----------- 160 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~----------- 160 (265)
.+.+..-....+-.-+...+..-.+.=+++++++||-. .|||-|+... ....||..+|++..+
T Consensus 165 ~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCA-----dAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~ 239 (539)
T PF04184_consen 165 TDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCA-----DAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQF 239 (539)
T ss_pred CCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhh-----HHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhh
Confidence 34444444555666667777777788888888898877 6888777532 457888888888531
Q ss_pred --hcC---------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCccC----
Q psy3174 161 --KYG---------ST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE-----DTLINNMVTAGRLGKGNEMS---- 217 (265)
Q Consensus 161 --~~p---------~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p-----dtl~nl~~~~~~~Gk~~ea~---- 217 (265)
.++ ++ +.+--.+|.|.-++|+.+||.+++++.+..+| .+..||+.++..++...++-
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111 11 22456789999999999999999999986532 26679999999999876532
Q ss_pred -------CCChhhhcHHHHHHHHHHHHhhcccc
Q psy3174 218 -------VSPPFLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 218 -------p~hp~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
|.... ..|-...-.|-+.+++|++.
T Consensus 320 kYdDi~lpkSAt-i~YTaALLkaRav~d~fs~e 351 (539)
T PF04184_consen 320 KYDDISLPKSAT-ICYTAALLKARAVGDKFSPE 351 (539)
T ss_pred HhccccCCchHH-HHHHHHHHHHHhhccccCch
Confidence 44332 23333333666677777654
|
The molecular function of this protein is uncertain. |
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.14 Score=53.49 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=76.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 102 KIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 102 ~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
++-.|+.-+++..|.-.++.++..+|.++ .+|+++. ...|+|.-|.+.|.++....|.+.....-.|+....
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~-----n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDY-----NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhH-----HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 55667778888888999999999999999 6676665 334889999999999999999998899999999999
Q ss_pred cCCHHHHHHHHHHHhcC
Q psy3174 179 QDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~ 195 (265)
.|+|.||.+.+...+..
T Consensus 643 ~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYA 659 (1238)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999998877654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.3 Score=39.69 Aligned_cols=83 Identities=14% Similarity=0.055 Sum_probs=53.9
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
......+-++..++..+.-|+++.|.+.|+.+...-|-+.. +++.+++.+... +.+.+|...+++....||.++.
T Consensus 29 ~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~--~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 29 VYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN--GEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCCCCC
Confidence 34567777777788888888888888888877765444433 345555555544 5678888888887777774432
Q ss_pred ---HHHHHHHH
Q psy3174 168 ---LVNAQVAV 175 (265)
Q Consensus 168 ---lLn~~A~~ 175 (265)
++...|.+
T Consensus 107 ~dY~~YlkgLs 117 (254)
T COG4105 107 ADYAYYLKGLS 117 (254)
T ss_pred hhHHHHHHHHH
Confidence 44444444
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.68 Score=36.24 Aligned_cols=77 Identities=18% Similarity=0.079 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q psy3174 133 QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLG 211 (265)
Q Consensus 133 ~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~G 211 (265)
+||+.-+ +++|.-..+||-.|.+-+.+.....-.+.--....+|.+|+|++| +...... .||+.--++-|.+++|
T Consensus 8 lLAElAL-~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a~klG 83 (116)
T PF09477_consen 8 LLAELAL-MATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCAWKLG 83 (116)
T ss_dssp HHHHHHH-HHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHHHHCT
T ss_pred HHHHHHH-HHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHHHhhc
Confidence 4444333 457778899999999888877542222333345578999999999 5566655 8888888888888888
Q ss_pred CC
Q psy3174 212 KG 213 (265)
Q Consensus 212 k~ 213 (265)
-.
T Consensus 84 L~ 85 (116)
T PF09477_consen 84 LA 85 (116)
T ss_dssp -H
T ss_pred cH
Confidence 64
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.047 Score=50.76 Aligned_cols=109 Identities=15% Similarity=-0.015 Sum_probs=88.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD 180 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g 180 (265)
+.-.+..|.++.|...+..+++++|++.+.. -+.+++.| .+...|+.-+.-.....|++...+-..+.++..+|
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl----~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKL----KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeec----cCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 3445567889999999999999999987553 34444433 67999999999999999999888888899999999
Q ss_pred CHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCc
Q psy3174 181 KYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 181 ~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~e 215 (265)
+|++|...|..+.++ ++++=..+=.|--+.++-.+
T Consensus 197 ~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e 233 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEE 233 (377)
T ss_pred chHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhh
Confidence 999999999999998 77777777667666666543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.74 E-value=2.6 Score=33.55 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH-------------HHHHHHHHHHH-------hccccHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL-------------TQLCSAWVHIA-------NNVDKLNEAFYTLQ 156 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l-------------~~la~a~v~l~-------~g~~~~~eA~~~~~ 156 (265)
|.....+......++...+...+.+++.+.....+ ..+...|+.+. ...|++++|....+
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 33444455566778899999999999885221111 11122222221 23467778888888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 157 DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 157 el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
.+...+|.+-.+.-.+-.++..+|+..+|...+.+.-.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888887766766777778888888888777776644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.59 Score=41.99 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHc-----------cCC-----CcHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQD-----------KDE-----DHTLTQLCSAWVHIANNVDKLNEAFYTLQDL 158 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~-----------~~~-----d~~l~~la~a~v~l~~g~~~~~eA~~~~~el 158 (265)
..+.+--.+-=+.+.||+.+|..-|+.++- ++| |..++.|-.-|.......|.|-+++..-.++
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 344444455567788999999999998865 111 2233333222222222336788888888899
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHH
Q psy3174 159 IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 159 ~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdt 199 (265)
...+|.+...+.-.|-+|..-=+..||+..+..+|+.||..
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 99999999999999999999999999999999999998874
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.24 Score=30.39 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
..++..++.+|..+|++++|++.++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34566778888888888888888888876
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.16 Score=28.94 Aligned_cols=25 Identities=32% Similarity=0.205 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
.....+|.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567889999999999999988763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.97 Score=33.88 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTLINN 203 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl 203 (265)
.+-++|.++...|++++|...+++|+.. |...+...
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~a 83 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYA 83 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4566899999999999999999999987 55555433
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=92.52 E-value=2.3 Score=44.14 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=80.0
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHH
Q psy3174 105 TYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEE 184 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eE 184 (265)
=.+..+++..|-+...+.+.--|...-+..-.|++.+.. |++.||..+.+.+....|.+-..|--+-.||..+|++++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~--gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRL--GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHh--cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 345556778888888888887777666655567776655 778899988888888877777778788889999999999
Q ss_pred HHHHHHHHhcCCHH--HHHHHHHHHHHcCC
Q psy3174 185 AWDLLQDTAGDSED--TLINNMVTAGRLGK 212 (265)
Q Consensus 185 Ae~~l~~al~~~pd--tl~nl~~~~~~~Gk 212 (265)
|..+++++...+|. .+.++..++..-+.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 99999999888444 66666666665553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.20 E-value=4.6 Score=31.55 Aligned_cols=123 Identities=21% Similarity=0.116 Sum_probs=89.6
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC---CCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG---STPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p---~t~~l 168 (265)
.+.........+.++..++++..|.+.+......+++.........+. +....+++++|...|++.....| .....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG-ALYELGDYEEALELYEKALELDPELNELAEA 169 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCccchHHH
Confidence 345667777788889999999999999999999777663222222220 12234889999999999876555 23345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGDS----EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~~----pdtl~nl~~~~~~~Gk~~e 215 (265)
+...+..+...+++++|...+.+++... +....++..++...|+...
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 5556666888999999999999999983 3457788888888885543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.31 Score=26.68 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
.....++.++..+++++.|...++++++.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667788999999999999999998887664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.75 Score=31.18 Aligned_cols=36 Identities=6% Similarity=-0.048 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT 132 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~ 132 (265)
|+++.++..+.++|+++.|.+....+++++|++.-.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 788999999999999999999999999999998733
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.96 Score=36.94 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=57.0
Q ss_pred CCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHh-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 126 DEDHTLTQLCSAWVHIANN-VDKLNEAFYTLQDLID-KYGS-TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g-~~~~~eA~~~~~el~~-~~p~-t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+.-+.-++...||.-..+. ....++-..+++++.. .+|. .-.-+.-+|+.|.+.|+|++|..++.-.++.
T Consensus 28 ~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 28 SDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred ccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4556667888899855532 2678899999999996 6774 5557888999999999999999999999987
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.54 Score=44.13 Aligned_cols=93 Identities=9% Similarity=-0.058 Sum_probs=72.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD 180 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g 180 (265)
+-.|.++|+|++|...|.+....+|-++++ +-|+||+.+ .++--|+.--.++....-.-...+...+.+...+|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~----K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ----KSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH----HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 448999999999999999999999976554 778888855 44666665555555444334567778888999999
Q ss_pred CHHHHHHHHHHHhcCCHHH
Q psy3174 181 KYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 181 ~~eEAe~~l~~al~~~pdt 199 (265)
+.+||....+.+|++.|.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 9999999999999996653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.79 E-value=4.7 Score=35.01 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy3174 147 KLNEAFYTLQDLIDKYGS----TPMLVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 147 ~~~eA~~~~~el~~~~p~----t~~lLn~~A~~~~~~g~~eEAe 186 (265)
+.++|..++-...+..+. +|.++.++|.+++++|++++|.
T Consensus 155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555444331 4666667777777777777664
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.48 E-value=3 Score=39.86 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
.+=...+-+|..+.-|+++.|++-|..|+. +|+--+.-|---|+ -++..|..+-|..+-++...+.|.-+...-..--
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyl-eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYL-EAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHH-HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 445667889999999999999999999965 22222222222233 3366688999999999999988854444434444
Q ss_pred HHHHcCCHHHHHHHHHHHhcC
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~ 195 (265)
..++.|+|+.|..++....+.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHH
Confidence 588999999999999876653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.96 E-value=7.5 Score=33.76 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC-CCHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG-STPMLVNAQ 172 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p-~t~~lLn~~ 172 (265)
+..|.-..++..++.. .+.-+++......-.++++ .|..... -.-++|...|-++-...- .|+.+...+
T Consensus 78 ~~~e~k~~R~~a~~~s--~~~l~~L~~~tk~S~dP~l------lYy~Wsr--~~d~~A~~~fL~~E~~~~l~t~elq~aL 147 (203)
T PF11207_consen 78 KQKERKTDRFRALLHS--YQELERLQEETKNSQDPYL------LYYHWSR--FGDQEALRRFLQLEGTPELETAELQYAL 147 (203)
T ss_pred chHhHHHHHHHHHHHH--HHHHHHHHHHHccCCCccH------HHHHhhc--cCcHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 3445555555555543 3444445555544555555 2333333 235789888888866533 789999988
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD-------SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~-------~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|.-|. ..+-++|..+|.++|+. ||+++..|+.++..+|+...+
T Consensus 148 AtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 148 ATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 87776 78899999999999987 899999999999999987654
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.7 Score=41.83 Aligned_cols=138 Identities=16% Similarity=0.042 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH------HHHHHHHHHHHhccccHHHHHHHHHH-------HHhhcCCC
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTL------TQLCSAWVHIANNVDKLNEAFYTLQD-------LIDKYGST 165 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l------~~la~a~v~l~~g~~~~~eA~~~~~e-------l~~~~p~t 165 (265)
+++-+.-++++|+.......|+.+++.+-++.- .||..||..| +.|++|..+..- ++++-+.
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL----~DY~kAl~yH~hDltlar~lgdklGE- 94 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYL----KDYEKALKYHTHDLTLARLLGDKLGE- 94 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhH----hhHHHHHhhhhhhHHHHHHhcchhcc-
Confidence 345567789999999999999999998876533 3677777766 458888776543 2223221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCccC-CCChhhhcHHHHHHHHHH
Q psy3174 166 PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---------SEDTLINNMVTAGRLGKGNEMS-VSPPFLFRSDETTATLDA 235 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---------~pdtl~nl~~~~~~~Gk~~ea~-p~hp~~~~~~~~~~~FD~ 235 (265)
..+--+++.++--+|+|+||.-.-.+-|.. ..-.+.|++.|+...||-..-. |..- -+--.++...|.+
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~-g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK-GAFNAEVTSALEN 173 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc-ccccHHHHHHHHH
Confidence 223345778899999999999887776664 3447899999999999965322 3221 2223455566666
Q ss_pred HHhhccc
Q psy3174 236 CGLQSNS 242 (265)
Q Consensus 236 ~~~~~~~ 242 (265)
.+.=|.-
T Consensus 174 Av~fy~e 180 (639)
T KOG1130|consen 174 AVKFYME 180 (639)
T ss_pred HHHHHHH
Confidence 6665553
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.65 Score=37.23 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHh---hcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 130 TLTQLCSAWVHIANNV-----DKLNEAFYTLQDLID---KYGS---------TPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 130 ~l~~la~a~v~l~~g~-----~~~~eA~~~~~el~~---~~p~---------t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
+|.+.+.+|..|..++ +-|.+|...++...+ +-|. +.....+++-++..+|+|+|+...-.++
T Consensus 2 PLkeVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 2 PLKEVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 5678889999888665 556777777777643 3332 3445778889999999999999988888
Q ss_pred hcC-------CHH-------HHHHHHHHHHHcCCCCccC
Q psy3174 193 AGD-------SED-------TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 193 l~~-------~pd-------tl~nl~~~~~~~Gk~~ea~ 217 (265)
|-- |.| +.++-++...-+|+++|++
T Consensus 82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~ 120 (144)
T PF12968_consen 82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEAL 120 (144)
T ss_dssp HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHH
Confidence 753 444 3457788888899987765
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=90.68 E-value=4.7 Score=39.54 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=81.6
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcC-CCHHHHHHHHHH--HH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYG-STPMLVNAQVAV--LI 177 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p-~t~~lLn~~A~~--~~ 177 (265)
-+-++++.+|--+++|.+.++++|.+. .+|...+ +.-|..+.|-.+|+=+.+... ++|.+| ..+.+ -+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c-----~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell-wkaYIdFEi 518 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENC-----YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL-WKAYIDFEI 518 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhh-----HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH-HHHhhhhhh
Confidence 345667788888899999999998887 6777766 333678888888887777644 566544 33333 45
Q ss_pred HcCCHHHHHHHHHHHhcC--CHHHHHHHHHH--HHHcCCCCccCCCChh--hhcHHHHHHHHHHHHhhcc
Q psy3174 178 AQDKYEEAWDLLQDTAGD--SEDTLINNMVT--AGRLGKGNEMSVSPPF--LFRSDETTATLDACGLQSN 241 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~--~pdtl~nl~~~--~~~~Gk~~ea~p~hp~--~~~~~~~~~~FD~~~~~~~ 241 (265)
..|.++.|..++++.|++ |--+.+..+.. +...|+..+.. +..- -.+.......||++-..|.
T Consensus 519 ~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~-~~~e~~~~~~~~AR~iferAn~~~k 587 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDL-AELEITDENIKRARKIFERANTYLK 587 (677)
T ss_pred hcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccch-hhhhcchhHHHHHHHHHHHHHHHHH
Confidence 788999999999999888 44455444333 22333322111 0000 1123445667777666554
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=90.67 E-value=5.9 Score=32.51 Aligned_cols=87 Identities=15% Similarity=-0.007 Sum_probs=69.5
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHhhcCC-CH---HHHHHHHHHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIAN---NVDKLNEAFYTLQDLIDKYGS-TP---MLVNAQVAVL 176 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~---g~~~~~eA~~~~~el~~~~p~-t~---~lLn~~A~~~ 176 (265)
.++-.-|++|.|...|.+++.+.|... .+|.|-++ -+++.++|.--..+..+..++ |- ......|+++
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~ra-----SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERA-----SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccch-----HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 366678999999999999999888766 45555441 347899999999999888663 32 2677889999
Q ss_pred HHcCCHHHHHHHHHHHhcC
Q psy3174 177 IAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~ 195 (265)
..+|+-+.|...+..|.++
T Consensus 126 Rl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHhCchHHHHHhHHHHHHh
Confidence 9999999999999988775
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=90.65 E-value=2.3 Score=33.82 Aligned_cols=63 Identities=13% Similarity=-0.051 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
-+.++-.++..+...|+++.|.+.+++++..+|-+--.......... ..|+..+|...|+++.
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~--~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA--AQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH--HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HCcCHHHHHHHHHHHH
Confidence 44566677778999999999999999999999977643333323322 4488999999999975
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.6 Score=42.77 Aligned_cols=120 Identities=9% Similarity=-0.054 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHH---HHHHHHHHHH---hccccHHHHHHHHHHHHh-----
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLT---QLCSAWVHIA---NNVDKLNEAFYTLQDLID----- 160 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~---~la~a~v~l~---~g~~~~~eA~~~~~el~~----- 160 (265)
.++.+.+++..|.+..+|++..|-|.+...--.. +.-++| .-...|.|+. ..-+.|+-+..+|.++.+
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999987763322 233344 2334566665 222779988888888764
Q ss_pred ----hcC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 161 ----KYG---------STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 161 ----~~p---------~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
.-| .+-.++.+.|+.+++.||.-+|-..+.++... +|-++--|+.|+.+-.+
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 011 23457888999999999999999999999876 99999999988877443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.33 Score=32.91 Aligned_cols=31 Identities=13% Similarity=-0.026 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+..+|+.+.++|+|++|......+|+.+|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4667999999999999999999999998665
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=89.55 E-value=17 Score=34.28 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=11.0
Q ss_pred hccHHHHHHHHhhcccCChhh
Q psy3174 21 LGNYQQCIKEGQRLKATDPKV 41 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~~~~~ 41 (265)
+|++..|+. ++.+++|+.
T Consensus 47 Lggi~a~a~---kL~ssDP~~ 64 (491)
T KOG2610|consen 47 LGGILASAE---KLSSSDPEA 64 (491)
T ss_pred hhhHHHHHH---HHhcCChHH
Confidence 566655555 466677753
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.57 Score=28.59 Aligned_cols=27 Identities=7% Similarity=-0.178 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
+..++.+|..+|+++.|...|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999996543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.29 Score=29.79 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=24.1
Q ss_pred HHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 189 LQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 189 l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
+++|++. |++.+.|++.++...|+..++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 6788888 777999999999999998765
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=89.32 E-value=14 Score=38.82 Aligned_cols=95 Identities=20% Similarity=0.101 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc----------CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH---
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK----------DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI--- 159 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~----------~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~--- 159 (265)
.++.-+-+.++..|...|++-+|.+-|.+++.. |=++-|.++| +..|+...-+|-.+|+|.+
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla-----l~s~~~d~v~aArYyEe~g~~~ 1038 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA-----LMSGGSDLVSAARYYEELGGYA 1038 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-----hhcCchhHHHHHHHHHHcchhh
Confidence 678888899999999999999999999888763 2233333333 2334444444444555421
Q ss_pred ----------------------------------hhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 160 ----------------------------------DKYG-STPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 160 ----------------------------------~~~p-~t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
+..| ++|.+++--|.-+..-..|++|..+|..+
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444 57888888888888888899988877644
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.8 Score=38.69 Aligned_cols=100 Identities=9% Similarity=0.018 Sum_probs=72.4
Q ss_pred HHhccccHHHHHHHHHHHHhhcC----CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhcC----CHH----HHHHHHHH
Q psy3174 141 IANNVDKLNEAFYTLQDLIDKYG----STPM--LVNAQVAVLIAQDKYEEAWDLLQDTAGD----SED----TLINNMVT 206 (265)
Q Consensus 141 l~~g~~~~~eA~~~~~el~~~~p----~t~~--lLn~~A~~~~~~g~~eEAe~~l~~al~~----~pd----tl~nl~~~ 206 (265)
+..|+++++||-.+|.+....+- |+.. ..--.|.+|++.|.-.+|-..+.+|..- +|. .|.+-|.+
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 55677899999999999876543 4433 4556788999999988888888888753 776 67788899
Q ss_pred HHHcCCCCccCCCChhhhcHHHHH-HHHHHHHhhc
Q psy3174 207 AGRLGKGNEMSVSPPFLFRSDETT-ATLDACGLQS 240 (265)
Q Consensus 207 ~~~~Gk~~ea~p~hp~~~~~~~~~-~~FD~~~~~~ 240 (265)
+..+|+..-+...|--+.++-+.+ ..|......|
T Consensus 103 yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~Y 137 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHY 137 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHH
Confidence 999999876666666666665544 4444444444
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=88.50 E-value=6.8 Score=38.49 Aligned_cols=117 Identities=9% Similarity=-0.006 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
...-+..+.++-.+++.+++.|++++-.++-..|.+-+ --+|+.+-..-+.++.--.+|++..+-.|.+...+..-|
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl---Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL---FKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH---HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 44456778888999999999999999999998887753 357777765557799999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC----CHHHHH-HHHHHHHHcCCC
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD----SEDTLI-NNMVTAGRLGKG 213 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~----~pdtl~-nl~~~~~~~Gk~ 213 (265)
-.-..+|+++.|..++.-|++. -|++|. ..|..-...|..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 9999999999999999999987 788765 334444444443
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=88.45 E-value=7.4 Score=34.89 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
..-..|+-..+.||-.|||+--|-+....+-+
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaE 121 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAE 121 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHH
Confidence 45567888889999999998887775555433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.27 E-value=0.52 Score=41.70 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
-+++-++-.|-..|-.++|+-.+.+++.+.|+-+-.-.-++...+ -.|+++-|+..|+-+.+..|..-...-+.|..+
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~--~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT--QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH--hcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 456667778888888999999999999999998744333332222 337899999999999999997555555678888
Q ss_pred HHcCCHHHHHHHHHHHhcCCHH
Q psy3174 177 IAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~~pd 198 (265)
.--|||+-|.+.+.+-.+.||.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCC
Confidence 8999999999999888877443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=88.18 E-value=11 Score=35.68 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC----C--cHHHHHHHHHHHHHhccccHHHHHHHHHH-HHhhcCCCHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDE----D--HTLTQLCSAWVHIANNVDKLNEAFYTLQD-LIDKYGSTPM 167 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~----d--~~l~~la~a~v~l~~g~~~~~eA~~~~~e-l~~~~p~t~~ 167 (265)
+.+.+..+-..|....++|...+.+..+..+.. + ++-.+.|.|.. -....|+.++|..++.+ +....+.++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 444455555678888888888888888877621 1 22224444433 12224788888888888 4444555555
Q ss_pred HHHHHHHHHHH---------cCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCC
Q psy3174 168 LVNAQVAVLIA---------QDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGN 214 (265)
Q Consensus 168 lLn~~A~~~~~---------~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ 214 (265)
.+-..|-+|-. ...+++|...+.++++.+|+ .-+|++++....|...
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcc
Confidence 54444444321 23477888888888888777 4578888888888754
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.77 Score=26.01 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELK 120 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~ 120 (265)
...+.++.++...||+++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999998875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=87.61 E-value=5.6 Score=39.09 Aligned_cols=100 Identities=8% Similarity=-0.007 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-cH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhh-cCCCHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDED-HT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDK-YGSTPMLVN 170 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~-~p~t~~lLn 170 (265)
+-+...+++|+-++||.++|.|.++.+++..|. +. --+|.++++ ..++|.++-.+..+.-+. -|.+..+-.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL----elq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL----ELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH----hcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 455677899999999999999999999875543 22 224444444 336788888888776443 344443333
Q ss_pred HHHHHHH-------------HcCC---HHHHHHHHHHHhcCCHHH
Q psy3174 171 AQVAVLI-------------AQDK---YEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 171 ~~A~~~~-------------~~g~---~eEAe~~l~~al~~~pdt 199 (265)
..|..-. +.|- -..|.+.+.+|.+.||++
T Consensus 335 TaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 335 TAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 3332221 1221 123567888888876653
|
The molecular function of this protein is uncertain. |
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=87.41 E-value=4.1 Score=38.34 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC--CCHHH--HHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG--STPML--VNAQV 173 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p--~t~~l--Ln~~A 173 (265)
..-+.+..+...|-++.||+.-++++++++-+.=+.=|.+-|-=.. +|.+|+..+.++-.+.-- +.... +=..|
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~--~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMN--GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhc--chhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 3445677888899999999999999999998876666666663323 789999999888765432 32222 34678
Q ss_pred HHHHHcCCHHHHHHHHHHHh
Q psy3174 174 AVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al 193 (265)
++|+.-++|+.|++++..-+
T Consensus 255 l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhcccchhHHHHHHHHHH
Confidence 99999999999999997543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.16 E-value=17 Score=30.59 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh---hcC-CC--HHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID---KYG-ST--PMLV 169 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~---~~p-~t--~~lL 169 (265)
.++-.++.-|+++|+++.|.+.|.++.+-. .......+...++.++--.+++..+.....++.. ..+ |+ ..+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345566779999999999999999997742 2223334444444444333667777777766543 222 22 2255
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
...|..++.+|+|.+|-..+.++..-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 67788899999999999999888654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=86.72 E-value=15 Score=32.06 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcc-----ccHHHHHHHHHHHHhh--cCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CH
Q psy3174 133 QLCSAWVHIANNV-----DKLNEAFYTLQDLIDK--YGS----TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----SE 197 (265)
Q Consensus 133 ~la~a~v~l~~g~-----~~~~eA~~~~~el~~~--~p~----t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----~p 197 (265)
-|-.||+.--.|. .=++.|...|++..+. +|. ...++..+|.++.+.|+++||...+.+++.. .|
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~ 200 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKE 200 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCc
Confidence 3445888554433 1245688888887654 432 3458889999999999999999999999986 33
Q ss_pred HHHHHHHHH
Q psy3174 198 DTLINNMVT 206 (265)
Q Consensus 198 dtl~nl~~~ 206 (265)
-.+.+++.=
T Consensus 201 ~~l~~~AR~ 209 (214)
T PF09986_consen 201 PKLKDMARD 209 (214)
T ss_pred HHHHHHHHH
Confidence 356666543
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=86.12 E-value=3.6 Score=36.91 Aligned_cols=80 Identities=13% Similarity=-0.001 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHccCCCcH--HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3174 110 YRNDLALKELKVMQDKDEDHT--LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWD 187 (265)
Q Consensus 110 ~r~d~Aek~l~~~~~~~~d~~--l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~ 187 (265)
.|++.|...|.+++.++|--+ -++-|+-++.+ .+++-+..-=+...+..|........++.+.++...|++|..
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 345555555555555444322 12233323221 334444444444444445445555555555555555555555
Q ss_pred HHHHHh
Q psy3174 188 LLQDTA 193 (265)
Q Consensus 188 ~l~~al 193 (265)
.|++|+
T Consensus 100 ~Lqra~ 105 (284)
T KOG4642|consen 100 VLQRAY 105 (284)
T ss_pred HHHHHH
Confidence 555553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=85.89 E-value=1.6 Score=26.43 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVM 122 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~ 122 (265)
.-....++..|++.||+|+|.+.+.+|
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 345567788999999999999999887
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=85.79 E-value=19 Score=35.17 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHH-HHHHHH---HhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLC-SAWVHI---ANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la-~a~v~l---~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
-++.-.+.++-+++++++|++++.++-+-..+++.. +- +.+-+. +--.++++.=....-++-+..|.++.+.-=.
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~-lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFL-LKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHH-HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 455667889999999999999999997755555321 11 111111 1111556666666777788899888877789
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC----------------CHH-HHH-HHHHHHHHcCCCCccC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD----------------SED-TLI-NNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~----------------~pd-tl~-nl~~~~~~~Gk~~ea~ 217 (265)
|+...++|+|.+|...+.-..+. -+| .+. ..+-|...+|+..|..
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999988755543 233 233 4578899999987743
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=85.75 E-value=2.4 Score=41.13 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
.....+--.+.-+.+|.|...|.++++++|...+. .-|.+++. .+.+..|..-..++.+..|.-...+.-.|.+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a 81 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTA 81 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHH
Confidence 34444556777889999999999999999965433 33445553 2678888888888888888877777788889
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
.|..+++-+|...|+..... +|++..-
T Consensus 82 ~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 82 VMALGEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHhHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 99999999999999988877 6665543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.66 E-value=3.2 Score=36.81 Aligned_cols=119 Identities=13% Similarity=-0.005 Sum_probs=82.3
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH-HHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM-LVN 170 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~-lLn 170 (265)
.|+-++....++.-+..-|++|.|-..+..++++||..--+-+--+ +++. -+||++-|-.-|.+..+..|.+|. .|
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~L- 171 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALY-YGGRYKLAQDDLLAFYQDDPNDPFRSL- 171 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeee-ecCchHhhHHHHHHHHhcCCCChHHHH-
Confidence 5999999999999999999999999999999999997643322221 1122 248999999999999999998876 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk~~e 215 (265)
.+ .+.-+.-+..+|..-+.+=.+. +.+-.-.- .|-..+||-.+
T Consensus 172 WL-Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~-iV~~yLgkiS~ 215 (297)
T COG4785 172 WL-YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWN-IVEFYLGKISE 215 (297)
T ss_pred HH-HHHHhhCCHHHHHHHHHHHHHhccHhhhhHH-HHHHHHhhccH
Confidence 11 1233445666777666555444 55544332 35566777654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.60 E-value=12 Score=36.22 Aligned_cols=85 Identities=15% Similarity=0.017 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
.++.+..-.++...+.+|+++.|++.|++..++ +- +.+++...|. .+.=.++- ++....++ .|..
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---~~-----L~lLy~~~g~--~~~L~kl~-~~a~~~~~----~n~a 408 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF---SG-----LLLLYSSTGD--REKLSKLA-KIAEERGD----INIA 408 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H---HH-----HHHHHHHCT---HHHHHHHH-HHHHHTT-----HHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc---cc-----cHHHHHHhCC--HHHHHHHH-HHHHHccC----HHHH
Confidence 456777778888888888888888888886431 11 2345555532 22222222 23333332 3444
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~a 192 (265)
..|++..|++++-.++|.++
T Consensus 409 f~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHc
Confidence 45677788888887777655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=85.41 E-value=2.2 Score=25.73 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
.+...+|.+-..+.+.|++++|.+++.+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4566788888899999999999998865
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=85.23 E-value=26 Score=35.70 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-----HHHHHHHHHHHHH-hccccH--HHHHHHHHHHHhhcCCCH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH-----TLTQLCSAWVHIA-NNVDKL--NEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-----~l~~la~a~v~l~-~g~~~~--~eA~~~~~el~~~~p~t~ 166 (265)
+|+..--.+-.+...+|.|+|.+.|..++..+.-. +--|+-+-..++. +...+. -.--.+++....++++-.
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 44555555668888999999999999886532211 1112322222222 222222 234557777778888744
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 -MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 -~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.++.++|.-|++-|+++.|.+++.+++..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 48999999999999999999999999986
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=84.93 E-value=4 Score=26.38 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..+|.+-..+.+.|++++|.+++++-.+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 35555556667777777777777666655
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.71 E-value=3.8 Score=26.61 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
+-++.+|..||+.+.|++++.++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4578899999999999999999985
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=84.13 E-value=1.5 Score=41.25 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCccC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE---DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p---dtl~nl~~~~~~~Gk~~ea~ 217 (265)
+|+|+||+--|-.....+|.++....+.|.+|+++.+|.-|+..-..|+.+|- -...--+.....+|+..|+-
T Consensus 110 QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 48999999999999999999999999999999999999999999999888732 23445556666677766654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.82 E-value=17 Score=33.47 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
|++.+|...|..+.+..|.+..+..++|.|++..|+.++|+.+|..
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 4555555556555555555555555555566666666665555543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.53 E-value=2.3 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+|.+|+.+|+.+.|.++|++++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 5899999999999999999999965
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=82.42 E-value=9.9 Score=34.24 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=56.2
Q ss_pred HHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 140 HIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA-QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 140 ~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~-~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
++....+..+.|-.+|.++....+.+..++...|..-.+ .++.+-|..+++.++.. +++.+...+......|+...
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence 334444669999999999985545577788888888777 45555599999999987 88888888888888887654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=82.18 E-value=8.6 Score=38.26 Aligned_cols=95 Identities=18% Similarity=0.073 Sum_probs=42.9
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHh--c-cccHHHHHHHHHHHHhh------cCCCHHHHHHHHHHHHHcC----
Q psy3174 114 LALKELKVMQDKDEDHTLTQLCSAWVHIAN--N-VDKLNEAFYTLQDLIDK------YGSTPMLVNAQVAVLIAQD---- 180 (265)
Q Consensus 114 ~Aek~l~~~~~~~~d~~l~~la~a~v~l~~--g-~~~~~eA~~~~~el~~~------~p~t~~lLn~~A~~~~~~g---- 180 (265)
.|.+.++.+ .+..++..+...+++.+.. | ..+.+.|+.+|+.+... .+ .+...+++|.|+++..
T Consensus 230 ~a~~~~~~~--a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 230 EAFKYYREA--AKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred HHHHHHHHH--HhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCcc
Confidence 344444444 2333444444444443332 0 14455555555555431 11 2224445555555532
Q ss_pred -CHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q psy3174 181 -KYEEAWDLLQDTAGD-SEDTLINNMVTAGRLG 211 (265)
Q Consensus 181 -~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~G 211 (265)
+++.|..++.++.+. +|+..++++++...-.
T Consensus 307 ~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGNPDAQYLLGVLYETGT 339 (552)
T ss_pred ccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC
Confidence 344455555555555 5555555555444433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.01 E-value=72 Score=33.60 Aligned_cols=118 Identities=9% Similarity=-0.060 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-CC-C-cHHH-HHHHHHHHHH----hccccHHHHHHHHHHHHhhcCC
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK-DE-D-HTLT-QLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~-~~-d-~~l~-~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p~ 164 (265)
..+++++.+.+-......|+++|+.++.++-.. .+ + .... .+| .|..+. -+.+++++|..+-++..+.-|.
T Consensus 412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~a-e~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLA-EFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 678899999999999999999999999888652 22 1 1111 122 122222 4558899999999998766552
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-------CHHHHHHH--HHHHHHcC
Q psy3174 165 -----TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-------SEDTLINN--MVTAGRLG 211 (265)
Q Consensus 165 -----t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-------~pdtl~nl--~~~~~~~G 211 (265)
-...+..++.+++-+|++++|..+.+++.+. +-+.++.+ ..++..+|
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 3446778899999999999999999999886 22333333 44556677
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=81.85 E-value=25 Score=31.83 Aligned_cols=122 Identities=20% Similarity=0.167 Sum_probs=74.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccC----CCcHHH----HHHHHHHHHHhccccHHHHHHHHHHHH------hhcCCCHH
Q psy3174 102 KIHTYLTMYRNDLALKELKVMQDKD----EDHTLT----QLCSAWVHIANNVDKLNEAFYTLQDLI------DKYGSTPM 167 (265)
Q Consensus 102 ~v~~~l~~~r~d~Aek~l~~~~~~~----~d~~l~----~la~a~v~l~~g~~~~~eA~~~~~el~------~~~p~t~~ 167 (265)
.+--.+...++|+|.++|++.+++= .++.-. +.+..+| ..+++.||-..|.+.+ ..+|+-..
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV----rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV----RLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh----hhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 3344556678899999998887741 122211 2222222 3367888777777643 33444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC----CHH---HHHHHHHHHHHcCCCCccC--CCChhhhcHHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD----SED---TLINNMVTAGRLGKGNEMS--VSPPFLFRSDE 228 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~----~pd---tl~nl~~~~~~~Gk~~ea~--p~hp~~~~~~~ 228 (265)
...++-.+|+...+|-.|+.+++..-+. .|+ ++.||+..+. .|.+++.. -+.|.+.++..
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~sp~~r~MDn 260 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLSSPTVRNMDN 260 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHcChHhhhhhH
Confidence 5666667788888999999999997766 333 7788876543 34433322 55666666543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.19 E-value=19 Score=32.57 Aligned_cols=58 Identities=10% Similarity=-0.010 Sum_probs=49.5
Q ss_pred hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHH
Q psy3174 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTL 200 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl 200 (265)
...++++.|....+-+....|++|.-.--.|.++.++|.+..|...|+.-++. +|++.
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 35588999999999999999999987778899999999999999999988887 55543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=81.15 E-value=8 Score=28.91 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=26.4
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
..|++++..+.++..+...|+++.|...+-.++..+++
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34677788888888888888888888888877776543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.78 E-value=28 Score=34.93 Aligned_cols=112 Identities=15% Similarity=0.068 Sum_probs=76.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHcc----C------CCc----------------HHHHHHHHHHHHHhccccHHHHHHH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDK----D------EDH----------------TLTQLCSAWVHIANNVDKLNEAFYT 154 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~----~------~d~----------------~l~~la~a~v~l~~g~~~~~eA~~~ 154 (265)
+.+.+.+.-++.+.|+|.+.++++. . +.. ..+....+|.++.. +++..|...
T Consensus 306 lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~--~~~~~a~~~ 383 (608)
T PF10345_consen 306 LSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR--GDWSKATQE 383 (608)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 3455667777787888777777652 1 111 11234557777767 568888888
Q ss_pred HHHHHhh---cCC------CHHHHHHHHHHHHHcCCHHHHHHHHH-------HHhc-C--CHH--HH--HHHHHHHHHcC
Q psy3174 155 LQDLIDK---YGS------TPMLVNAQVAVLIAQDKYEEAWDLLQ-------DTAG-D--SED--TL--INNMVTAGRLG 211 (265)
Q Consensus 155 ~~el~~~---~p~------t~~lLn~~A~~~~~~g~~eEAe~~l~-------~al~-~--~pd--tl--~nl~~~~~~~G 211 (265)
.+++.+. .|. .+.+....|+.+...|+.+.|+..+. +... . +.| ++ .|++.+....+
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence 8887654 232 47788899999999999999999998 3333 3 556 23 47788887777
Q ss_pred CCC
Q psy3174 212 KGN 214 (265)
Q Consensus 212 k~~ 214 (265)
...
T Consensus 464 ~~~ 466 (608)
T PF10345_consen 464 SRD 466 (608)
T ss_pred ccc
Confidence 643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.07 E-value=9.2 Score=29.76 Aligned_cols=71 Identities=20% Similarity=0.054 Sum_probs=41.5
Q ss_pred HhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q psy3174 142 ANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk~~ 214 (265)
.+|.-..+||..|-+-+.......-.+---....+|-+|+|++|..+.+.. -.||+.-.++-|.|++|-..
T Consensus 15 gTG~HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~--~~pdlepw~ALce~rlGl~s 85 (115)
T TIGR02508 15 GTGHHCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL--CYPDLEPWLALCEWRLGLGS 85 (115)
T ss_pred HccchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC--CCchHHHHHHHHHHhhccHH
Confidence 356667777777776665543221111112233577778887776554332 17777777777777777543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 265 | ||||
| 3mkr_A | 291 | Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomp | 2e-33 |
| >pdb|3MKR|A Chain A, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of The Copi Vesicular Coat Length = 291 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 265 | |||
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 1e-40 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 5e-37 |
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 141 bits (355), Expect = 1e-40
Identities = 95/252 (37%), Positives = 138/252 (54%), Gaps = 46/252 (18%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPE 69
DELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ+KY VVL+E P
Sbjct: 1 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS 60
Query: 70 ---ELSCIKVLAEYLSIPSKNGSS------------------------------------ 90
EL +++ AEYL+ S+ +
Sbjct: 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120
Query: 91 ----NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD 146
+ G LE A+ + L + R DLA KELK MQD+DED TLTQL +AWV +A +
Sbjct: 121 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 147 KLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG---DSEDTLINN 203
KL +A+Y Q++ DK T +L+N Q A +AQ ++E A +LQ+ +TLIN
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240
Query: 204 MVTAGRLGKGNE 215
+V + LGK E
Sbjct: 241 VVLSQHLGKPPE 252
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Length = 310 | Back alignment and structure |
|---|
Score = 132 bits (332), Expect = 5e-37
Identities = 39/271 (14%), Positives = 74/271 (27%), Gaps = 71/271 (26%)
Query: 7 NEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK 66
+ + F+++ +YY GN+ QC++E ++ FY ++ LA +Y +
Sbjct: 12 QDPMDYFNIKQNYYTGNFVQCLQEIEKFSKVTD---NTLLFYKAKTLLALGQY-----QS 63
Query: 67 LPEELSCIKVLAEYLSIPSKN--------------------------------------- 87
KVL Y+
Sbjct: 64 QDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETC 123
Query: 88 ----GSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT------LTQLCSA 137
+ E+ L I L A + ED + L +
Sbjct: 124 VEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183
Query: 138 WVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-- 195
++ A N + FY ++L + + + + + Q EA +++ D
Sbjct: 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQ-LGLLNLHLQQRNIAEAQGIVELLLSDYY 242
Query: 196 -----------SEDTLINNMVTAGRLGKGNE 215
L N + A G E
Sbjct: 243 SVEQKENAVLYKPTFLANQITLALMQGLDTE 273
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 265 | |||
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 100.0 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.6 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.58 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.54 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.53 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.53 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.5 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.49 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.46 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.45 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.44 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.44 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.43 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.39 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.36 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.36 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.34 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.34 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.34 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.32 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.32 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.32 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.31 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.31 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.3 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.3 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.28 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.27 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.27 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.26 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.25 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.25 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.24 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.24 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.24 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.23 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.23 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.22 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.22 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.21 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.21 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.2 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.18 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.16 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.16 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.15 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.13 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.13 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.12 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.11 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.11 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.1 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.09 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.09 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.08 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.07 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.07 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.07 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.06 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.06 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.06 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.04 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.04 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.03 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.99 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.97 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.96 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.96 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.95 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.94 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.94 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.93 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.92 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.92 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.87 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.82 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.82 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.82 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.81 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.75 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.75 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.74 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.73 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.72 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.68 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.65 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.64 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.64 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.62 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.62 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.61 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.59 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.55 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.52 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.51 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.51 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.5 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.48 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.47 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.47 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.46 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.46 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.39 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.39 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.38 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.28 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.22 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.21 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.2 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.18 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.11 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.07 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.05 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.98 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.91 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.87 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.82 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.79 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.65 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.59 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.53 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.48 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.37 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.33 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.3 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.29 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.07 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.98 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 96.94 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 96.85 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.68 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.67 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.23 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.17 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.15 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.0 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.66 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.73 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.53 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 93.4 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.88 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.61 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.93 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.14 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 91.06 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 90.56 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.53 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 88.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.47 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 87.94 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.1 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.37 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.65 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.55 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.99 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.23 |
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=345.27 Aligned_cols=229 Identities=17% Similarity=0.250 Sum_probs=195.1
Q ss_pred cCCcchhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCC
Q psy3174 6 DNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPS 85 (265)
Q Consensus 6 ~~~~delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~ 85 (265)
..|+|+||+|||+||+|+|++||++++++++.++ .++++|+||||||+|++..+.+ ++|.+++|+++|+|+..+.
T Consensus 11 ~~~~~~lf~ikn~fy~G~yq~~i~e~~~~~~~~~---~~~~~~~~Rs~iAlg~~~~~~~--~~~~~~a~~~la~~~~~~a 85 (310)
T 3mv2_B 11 SQDPMDYFNIKQNYYTGNFVQCLQEIEKFSKVTD---NTLLFYKAKTLLALGQYQSQDP--TSKLGKVLDLYVQFLDTKN 85 (310)
T ss_dssp ----CCTHHHHHHHTTTCHHHHTHHHHTSSCCCC---HHHHHHHHHHHHHTTCCCCCCS--SSTTHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHHhhHHHHHHHHHHhcCccch---HHHHHHHHHHHHHcCCCccCCC--CCHHHHHHHHHHHHhcccH
Confidence 4689999999999999999999999877665444 4689999999999999986554 6777889999999997542
Q ss_pred cCc---------c---------------cc--------------c--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 86 KNG---------S---------------SN--------------F--GTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 86 ~~e---------~---------------~~--------------~--~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
... . ++ . ++++|++++.|++++++||+|+|++++++|+++
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 110 0 11 1 289999999999999999999999999999999
Q ss_pred CC------CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--
Q psy3174 126 DE------DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-- 194 (265)
Q Consensus 126 ~~------d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~-- 194 (265)
+| |+++++|+++|+++.+|++++++|+++|+|+.+++|+ +..++| |++++|+|+||+..++.+++
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHHHHHHHHHHSHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHHHHHHHHHHHhc
Confidence 98 7999999999999999999999999999999999996 445666 89999999999999987665
Q ss_pred ----------C-CHHHHHHHHHHHHHcCCCCccC--------CCChhhhcHHHHHHHHHHHHhhcccc
Q psy3174 195 ----------D-SEDTLINNMVTAGRLGKGNEMS--------VSPPFLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 195 ----------~-~pdtl~nl~~~~~~~Gk~~ea~--------p~hp~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
. ||++++|+|+++.++|+..+.+ |+||+++++.++++.||+++.+|+++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~~~~ky~~~ 309 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDTS 309 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTCC--
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 8999999999999999955443 99999999999999999999999865
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=302.87 Aligned_cols=234 Identities=43% Similarity=0.673 Sum_probs=217.4
Q ss_pred chhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---CChHHHHHHHHHHHhcCCCc
Q psy3174 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---LPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 10 delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---~~~~l~~~~~~A~~l~~~~~ 86 (265)
||||+|||+||+|+|++||++++++...+|++..+++++++|+|+++|+++.++.++ ++|.+.++..++.++...++
T Consensus 1 d~l~~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 1 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc
Confidence 799999999999999999999988888999999999999999999999999999988 67789999999999887664
Q ss_pred Ccc-------------------------------cc---------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 87 NGS-------------------------------SN---------FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 87 ~e~-------------------------------~~---------~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
.+. ++ .|+++++...++++|+.+||+++|.+.|+++++++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 321 11 17899999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHH
Q psy3174 127 EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINN 203 (265)
Q Consensus 127 ~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl 203 (265)
||++..+++.+|+++..+.|++++|+.+|+++.+.+|+++.+++++|.+++++|+|++|+..++++++. +|+++.|+
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999998899999999999999999999999999999999999999999999999998 88899999
Q ss_pred HHHHHHcCCCCccC-----------CCChhhhcHHHHHHHHHHHHhhcccc
Q psy3174 204 MVTAGRLGKGNEMS-----------VSPPFLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 204 ~~~~~~~Gk~~ea~-----------p~hp~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
++++..+|+..++. |+||++.++.+++..||+++.+|+|+
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~~~~~~~ 291 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQYAPS 291 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999986532 99999999999999999999999875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-14 Score=122.88 Aligned_cols=232 Identities=13% Similarity=0.031 Sum_probs=164.0
Q ss_pred cchhH-HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHh
Q psy3174 9 VDELF-DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYL 81 (265)
Q Consensus 9 ~delf-~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l 81 (265)
++-++ ..+..|..|+|.+|+..++++...+|.. ........+++..+|+++.++..+ .+....++..++.++
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH-ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44444 4478889999999999876665544443 223444578889999998666544 232344455555555
Q ss_pred cCCC-cCc-c--------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHH
Q psy3174 82 SIPS-KNG-S--------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEA 151 (265)
Q Consensus 82 ~~~~-~~e-~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA 151 (265)
...+ ..+ + ...|.+.+....++.++..+|+++.|.+.++++++..|++.......+.+.... |++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT--NNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT--TCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--hhHHHH
Confidence 4444 322 1 334778888888888899999999999999988888887765555555554444 678889
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHcCCCCccC--
Q psy3174 152 FYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------------SEDTLINNMVTAGRLGKGNEMS-- 217 (265)
Q Consensus 152 ~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------------~pdtl~nl~~~~~~~Gk~~ea~-- 217 (265)
...|+++....|.++.+++.+|.++..+|++++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999888888888888888888899999999998888888864 3457888888888888877654
Q ss_pred --------CCChhhhcHH----HHHHHHHHHHhhcccc
Q psy3174 218 --------VSPPFLFRSD----ETTATLDACGLQSNSE 243 (265)
Q Consensus 218 --------p~hp~~~~~~----~~~~~FD~~~~~~~~~ 243 (265)
|+++.+.... .....|++...-|...
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7776554432 2455566666666544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=124.76 Aligned_cols=122 Identities=15% Similarity=0.013 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++......++.++..+|++++|.+.|+++++.+|+++.+....+.+.... |++++|...|+++....|.++..++.+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK--GSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 556666666666666666666666666666666666554433333333323 556666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|.++..+|++++|...++++++. ++.+..+++.++..+|+..++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666666665 344556666666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-14 Score=117.80 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=144.0
Q ss_pred hhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc
Q psy3174 11 ELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 11 elf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
-++.. ...+-.|+|++|+..+++....+|+. .+......+++..+|+++.++.. ++....
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~--------~~~al~---------- 67 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQD-PEALYWLARTQLKLGLVNPALEN--------GKTLVA---------- 67 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHH----------
Confidence 34444 45667899999999987666666654 23455667889999999876662 221111
Q ss_pred cccCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTM-----------YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL 158 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~-----------~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el 158 (265)
..|++.+....++.++..+ |++++|.+.|+++++.+|+++.+....+++.... |++++|...|+++
T Consensus 68 -~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~--g~~~~A~~~~~~a 144 (217)
T 2pl2_A 68 -RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL--GERDKAEASLKQA 144 (217)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence 2367889999999999999 9999999999999999999987766666665545 7899999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 159 IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 159 ~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.... +++.+++.+|.++..+|++++|...++++++. +++++.+++.++..+|+.+++.
T Consensus 145 l~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 145 LALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred Hhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 9998 89999999999999999999999999999998 6778999999999999988765
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-14 Score=121.57 Aligned_cols=211 Identities=13% Similarity=-0.021 Sum_probs=163.9
Q ss_pred HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHccc-ChhHHhhhc------CChHHHHHHHHHHHhcCCCc
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQK-KYKVVLEEK------LPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg-~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~ 86 (265)
-....+..|+|++++..++++....|+. ......+.+++..+| +++.++.-+ .+....++..++..+...++
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSN-PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTS-THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 4577788999999999876655444433 233455678899999 887655444 22224445556655544433
Q ss_pred Ccc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 87 NGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 87 ~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
.+. ...|++.+....++.+|..+|+++.|.+.++++++.+|++..+....+++.... |++++|...|++
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~ 218 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN--GEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--ccHHHHHHHHHH
Confidence 322 234788899999999999999999999999999999999987777777776655 789999999999
Q ss_pred HHhhc---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC--------
Q psy3174 158 LIDKY---------GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS-------- 217 (265)
Q Consensus 158 l~~~~---------p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~-------- 217 (265)
+.... |..+.++..+|.++..+|++++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 98876 556678999999999999999999999999987 6679999999999999987654
Q ss_pred --CCChhhhcHH
Q psy3174 218 --VSPPFLFRSD 227 (265)
Q Consensus 218 --p~hp~~~~~~ 227 (265)
|+++.+....
T Consensus 299 ~~p~~~~~~~~l 310 (330)
T 3hym_B 299 LRRDDTFSVTML 310 (330)
T ss_dssp TCSCCHHHHHHH
T ss_pred cCCCchHHHHHH
Confidence 8888665543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.4e-14 Score=126.29 Aligned_cols=199 Identities=10% Similarity=-0.045 Sum_probs=115.0
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCc
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e 88 (265)
.+..|-.|+|.+|+..+.++...+|+.. .....+.+.+...|+++.++... .+....++..++..+...++.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNT-GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 4566778888888887655544444432 22344456677777776544322 3333444444444433333221
Q ss_pred c---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q psy3174 89 S---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 89 ~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
. ...|++.+....++.++..+|+++.|.+.|+++++.+|+........+.+.... |++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL--GRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHH
Confidence 1 123666666666666666666666666666666666666654443333333222 55666666666666
Q ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 160 DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 160 ~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
...|..+..++.+|.++..+|++++|...++++++. +++.+.+++.++...|+..++
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666666666666666666655 444556666666666665554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-13 Score=107.39 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=135.6
Q ss_pred cCCcch-hHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC
Q psy3174 6 DNEVDE-LFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI 83 (265)
Q Consensus 6 ~~~~de-lf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~ 83 (265)
|+|... ++.+ ...+-.|+|++|+..+++.-..+|+. .+....+.++|..+|+++.++.. +....
T Consensus 1 ~ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~a~~~--------~~~~~----- 66 (184)
T 3vtx_A 1 MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-VETLLKLGKTYMDIGLPNDAIES--------LKKFV----- 66 (184)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHH-----
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHH--------HHHHH-----
Confidence 344333 4555 44556799999999987665555554 23455667889999999876662 11111
Q ss_pred CCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 84 PSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 84 ~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
...++..+.....+.++...++++.|.+.+.++.+.+|++.-.....+.+.... |++++|...|+++.+..|
T Consensus 67 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 67 ------VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM--GEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp ------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCT
T ss_pred ------hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh--CCchhHHHHHHHHHHhcc
Confidence 233567788899999999999999999999999999999987777777776655 789999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.++.++..+|.++..+|++++|...+++|++.+|+
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999887
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-13 Score=112.28 Aligned_cols=190 Identities=9% Similarity=-0.039 Sum_probs=141.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTH 95 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~ 95 (265)
...+..|+|.+|+..+++....+|+. ......+.++|..+|+++.++.. +..... ..+.+
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~~ 90 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAF--------YDKALE-----------LDSSA 90 (243)
T ss_dssp -----------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTTC
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHH-----------cCCcc
Confidence 55677899999988876655555543 23445557888888888876662 121111 13456
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
.+....++.++..+|+++.|.+.++++++.+|++.......+.+.+.. |++++|...|+++....|.++..+..+|.+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL--EQPKLALPYLQRAVELNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 788899999999999999999999999999988876666666665545 789999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSD 227 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~ 227 (265)
++.+|++++|...+.++++. +++++.+++.++..+|+..++. |+++.+....
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 99999999999999999887 6778999999999999988764 7777665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-12 Score=115.03 Aligned_cols=133 Identities=14% Similarity=0.016 Sum_probs=83.8
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHH------------HHHHHHHHhccccHHHHHHHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQL------------CSAWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~l------------a~a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
.|.+.+....++.++..+|+++.|.+.++++++.+|++..... ..+.+.+ ..|++++|...|+++.
T Consensus 184 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~ 261 (359)
T 3ieg_A 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI--RDGRYTDATSKYESVM 261 (359)
T ss_dssp CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence 3666667777777777777777777777777766666654211 1122222 2356777777777777
Q ss_pred hhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 160 DKYGSTPM----LVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 160 ~~~p~t~~----lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
...|.++. ++..+|.++..+|++++|...++++++. +|+++.+++.++..+|+..++. |+++.
T Consensus 262 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 262 KTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 77676543 3445677777777777777777777765 5566777777777777765543 66665
Q ss_pred hhcH
Q psy3174 223 LFRS 226 (265)
Q Consensus 223 ~~~~ 226 (265)
+...
T Consensus 342 ~~~~ 345 (359)
T 3ieg_A 342 IREG 345 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=113.20 Aligned_cols=194 Identities=12% Similarity=0.074 Sum_probs=154.1
Q ss_pred cchhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcC
Q psy3174 9 VDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKN 87 (265)
Q Consensus 9 ~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~ 87 (265)
++.++.. +..+..|+|.+|+..++++...+|+. .........++..+|+++.++.. +.....
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~-------- 65 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPD--------LTKVIA-------- 65 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHH--------HHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHccCHHHHHHH--------HHHHHH--------
Confidence 3445555 66788999999999986655545443 23456667889999999877662 221111
Q ss_pred cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC---CcHHHHHHH------------HHHHHHhccccHHHHH
Q psy3174 88 GSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE---DHTLTQLCS------------AWVHIANNVDKLNEAF 152 (265)
Q Consensus 88 e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~---d~~l~~la~------------a~v~l~~g~~~~~eA~ 152 (265)
..|++.+....++.++..+|+++.|.+.++++++.+| ++....... +.+. ...|++++|.
T Consensus 66 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--~~~~~~~~A~ 140 (359)
T 3ieg_A 66 ---LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA--FDGADYTAAI 140 (359)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCHHHHH
T ss_pred ---hCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH--HHccCHHHHH
Confidence 1356779999999999999999999999999999999 766544333 2222 3348899999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CC
Q psy3174 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VS 219 (265)
Q Consensus 153 ~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~ 219 (265)
..|+++.+..|.++..+..+|.++..+|++++|...+.++++. +++++.+++.++..+|+..++. |+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999999999999999999999998 7889999999999999987754 88
Q ss_pred Chhhh
Q psy3174 220 PPFLF 224 (265)
Q Consensus 220 hp~~~ 224 (265)
++.+.
T Consensus 221 ~~~~~ 225 (359)
T 3ieg_A 221 HKRCF 225 (359)
T ss_dssp CHHHH
T ss_pred chHHH
Confidence 88754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-14 Score=124.40 Aligned_cols=204 Identities=13% Similarity=0.008 Sum_probs=146.4
Q ss_pred hhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcC
Q psy3174 11 ELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSI 83 (265)
Q Consensus 11 elf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~ 83 (265)
.+|.. ...+-.|+|.+|+..+++.....|+. ......+.++|..+|+++.++..+ .+....++..++..+..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 34544 77788999999999986665545543 234556678899999998766555 33335556666665554
Q ss_pred CCcCcc---------cccC----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHH
Q psy3174 84 PSKNGS---------SNFG----------THLEINALKIHTYLTMYRNDLALKELKVMQDKDED--HTLTQLCSAWVHIA 142 (265)
Q Consensus 84 ~~~~e~---------~~~~----------~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d--~~l~~la~a~v~l~ 142 (265)
.++.+. ...| ........++.++..+|+++.|.+.++++++.+|+ ++.+....+.+...
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 444322 1112 22334445588999999999999999999999988 66555555555544
Q ss_pred hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
. |++++|...|+++....|.++.+++.+|.++..+|++++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 226 ~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 226 S--GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp H--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred C--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 4 78999999999999999999999999999999999999999999999987 6678999999999999998765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=121.50 Aligned_cols=206 Identities=8% Similarity=-0.104 Sum_probs=142.4
Q ss_pred HhhhhccHHHHHH-HHhhcc---cCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCc
Q psy3174 17 NSYYLGNYQQCIK-EGQRLK---ATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 17 ~~fy~G~Y~~~i~-~~~~~~---~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~ 86 (265)
...++|+|.+++. .+++.- +.+|.......+...++++..|+++.++..+ .+....++..++..+...++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5678999999998 654332 2333223445566788999999998766554 23334555556655544443
Q ss_pred Ccc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHH----------------HHHHHHH
Q psy3174 87 NGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQL----------------CSAWVHI 141 (265)
Q Consensus 87 ~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~l----------------a~a~v~l 141 (265)
.+. ...|++.+....++.+|..+|+++.|.+.++++++.+|++..... ..+.+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-- 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH--
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH--
Confidence 322 234889999999999999999999999999999998887653321 11111
Q ss_pred HhccccHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 142 ANNVDKLNEAFYTLQDLIDKYGS--TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~~p~--t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
...|++++|..+|+++....|. .+..++.+|.++..+|++++|...++++++. ++.++.+++.++..+|+..++
T Consensus 192 -~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 -LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 1347899999999999999998 7889999999999999999999999999887 667889999999999998776
Q ss_pred C----------CCChhhhc
Q psy3174 217 S----------VSPPFLFR 225 (265)
Q Consensus 217 ~----------p~hp~~~~ 225 (265)
. |+++.+..
T Consensus 271 ~~~~~~al~~~~~~~~~~~ 289 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRY 289 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 4 77775543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-12 Score=109.92 Aligned_cols=134 Identities=10% Similarity=-0.027 Sum_probs=113.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQD--KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~--~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.|.+.+....++.+|..+|++++|.+.++++++ ..+++.......+++.+.. |++++|...|+++....|..+..+
T Consensus 101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~ 178 (252)
T 2ho1_A 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM--KKPAQAKEYFEKSLRLNRNQPSVA 178 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCcccHHHH
Confidence 356788899999999999999999999999998 7777776666666665545 789999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSD 227 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~ 227 (265)
..+|.++..+|++++|...++++++. +++.+..++.++..+|+..++. |++|.+..+.
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999987 7778889999999999877653 7777766543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-12 Score=117.98 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=113.7
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHH------------HHHHHHhccccHHHHHHHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCS------------AWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~------------a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
.|++++....++.+|..+|+++.|.+.++++++.+|++....... +.... ..|++++|...|+++.
T Consensus 207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI--RDGRYTDATSKYESVM 284 (450)
T ss_dssp HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999887654332 33333 3378999999999999
Q ss_pred hhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 160 DKYGSTPM----LVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 160 ~~~p~t~~----lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
...|.++. ++..+|.++.++|++++|...++++++. +++++.+++.++..+|+..++. |+++.
T Consensus 285 ~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH
Confidence 99998643 7889999999999999999999999976 6779999999999999987754 99887
Q ss_pred hhcHHH
Q psy3174 223 LFRSDE 228 (265)
Q Consensus 223 ~~~~~~ 228 (265)
+.....
T Consensus 365 ~~~~l~ 370 (450)
T 2y4t_A 365 IREGLE 370 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 755443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-12 Score=113.58 Aligned_cols=203 Identities=12% Similarity=0.016 Sum_probs=131.2
Q ss_pred hhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcC
Q psy3174 11 ELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSI 83 (265)
Q Consensus 11 elf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~ 83 (265)
.++.. +..+-.|+|.+|+..+++.....|+. ......+.++|..+|+++.++..+ .+....++..++..+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444 67778899999999886665555543 234455678899999988665544 23334444444444332
Q ss_pred CCcCcc----------------------------------------------------------cccCC--CHHHHHHHH
Q psy3174 84 PSKNGS----------------------------------------------------------SNFGT--HLEINALKI 103 (265)
Q Consensus 84 ~~~~e~----------------------------------------------------------~~~~~--~lE~~al~v 103 (265)
.++.+. ...|+ .......++
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 222111 01144 566777777
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
.+|..+|+++.|.+.++++++.+|++..+....+.+.... |++++|...|+++....|..+..+..+|.++..+|+++
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG--NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 7777777777777777777777777665544444444433 56777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcC---C-----------HHHHHHHHHHHHHcCCCCcc
Q psy3174 184 EAWDLLQDTAGD---S-----------EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 184 EAe~~l~~al~~---~-----------pdtl~nl~~~~~~~Gk~~ea 216 (265)
+|...++++++. + ++++.+++.++..+|+.+++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 777777777765 3 45667777777777776543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-13 Score=113.60 Aligned_cols=162 Identities=14% Similarity=-0.029 Sum_probs=133.9
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.....++++.+|+++.++.. ++ ..+ ...|++++....++.++..+|++++|.+.|+++++.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~--------~~---~al--------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTL--------FE---RAL--------KENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHH--------HH---HHH--------TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH--------HH---HHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556778888888866652 11 111 245788999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHh---------ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-
Q psy3174 126 DEDHTLTQLCSAWVHIAN---------NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD- 195 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~---------g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~- 195 (265)
+|+++.+....+.+.... ..|++++|...|+++.+..|+.+..+..+|.++..+|++++|...++++++.
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 999986655555554433 0167999999999999999999999999999999999999999999999987
Q ss_pred -CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 196 -SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 196 -~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+|+++.+++.++..+|+.+++. |+++.+...
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 190 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 8889999999999999998765 888866543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=109.99 Aligned_cols=190 Identities=7% Similarity=-0.042 Sum_probs=131.3
Q ss_pred hhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc
Q psy3174 11 ELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 11 elf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
.++.. ...+..|+|.+|+..+++..... ........+.++|..+|+++.++..+ ...........
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~--------~~a~~~~~~~~---- 72 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTL--------NDAVEQGREMR---- 72 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHH--------HHHHHHHHHTT----
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHH--------HHHHHhCcccc----
Confidence 34544 55667899999999875543322 22334566678899999998777632 11111100000
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc--------------------------cCCCcHHHHHHHHHHHHHh
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQD--------------------------KDEDHTLTQLCSAWVHIAN 143 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~--------------------------~~~d~~l~~la~a~v~l~~ 143 (265)
..++........++.++..+|+++.|.+.++++++ .+|+........+++.+..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 01112256666666777777777777777777666 5555555555555554444
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|++++|...|+++....|.++..+..+|.++..+|++++|...+.++++. +++++.+++.++..+|+..++
T Consensus 153 --~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 153 --SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp --TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77999999999999999988889999999999999999999999999887 677888999999999987654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.7e-13 Score=112.95 Aligned_cols=214 Identities=10% Similarity=-0.054 Sum_probs=142.7
Q ss_pred chhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-------CChH--HHHHHHHHH
Q psy3174 10 DELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-------LPEE--LSCIKVLAE 79 (265)
Q Consensus 10 delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-------~~~~--l~~~~~~A~ 79 (265)
+.++.. ...|-.|+|++|+..+++....+|+. ......+.++|..+|+++.++..+ .++. ..++..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS-PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC-STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344444 67778899999999986665555543 234556678999999998766543 1112 223444554
Q ss_pred HhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHH
Q psy3174 80 YLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNE 150 (265)
Q Consensus 80 ~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~e 150 (265)
.+...++.+. ...|++.+....++.+|..+|+++.|.+.++++++.+|++.......++..... +++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN--KEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH--HHHHH
Confidence 4443333221 224677778888888888888888888888888887777765554444222223 37888
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcC---CH--------HHHHHHHHHHHHcCCCCcc
Q psy3174 151 AFYTLQDLIDKYGSTPMLVNAQVAVLIAQDK---YEEAWDLLQDTAGD---SE--------DTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 151 A~~~~~el~~~~p~t~~lLn~~A~~~~~~g~---~eEAe~~l~~al~~---~p--------dtl~nl~~~~~~~Gk~~ea 216 (265)
|...|+++.+..|.++..+..+|.++..+|+ +++|...++++++. .| +++.+++.++..+|+..++
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888777777778888888887 77788888887765 22 3556777788778777655
Q ss_pred C----------CCChhhhcH
Q psy3174 217 S----------VSPPFLFRS 226 (265)
Q Consensus 217 ~----------p~hp~~~~~ 226 (265)
. |++|.++..
T Consensus 241 ~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCccHHHHHHH
Confidence 4 777766554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.7e-13 Score=124.93 Aligned_cols=207 Identities=13% Similarity=0.020 Sum_probs=141.1
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
.-.+-.|+|.+|+..++++....|+. ......+..++..+|+++.++..+ .+.....+..++..+...++.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYN-LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence 34455667777766654443333321 222334456666666665444332 22233444444444433333221
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...|.+.+....++.+|...|++++|.+.|+++++.+|++..+....+.+.... |++++|..+|+++.+
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL--GNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 224778888888899999999999999999999888888776665555554444 679999999999988
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------C----HHHHHHHHHHHHHcCCCCccC----------CCC
Q psy3174 161 KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------S----EDTLINNMVTAGRLGKGNEMS----------VSP 220 (265)
Q Consensus 161 ~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~----pdtl~nl~~~~~~~Gk~~ea~----------p~h 220 (265)
..|.++..++.++.++.++|++++|..+++++++. + +.++.+++.++...|+.+++. |++
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 88888888999999999999999999999988875 3 447788899999999887654 777
Q ss_pred hhhhc
Q psy3174 221 PFLFR 225 (265)
Q Consensus 221 p~~~~ 225 (265)
+.+..
T Consensus 550 ~~~~~ 554 (597)
T 2xpi_A 550 ANVHT 554 (597)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 75544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-12 Score=104.71 Aligned_cols=148 Identities=12% Similarity=-0.016 Sum_probs=126.6
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
+..+|..+|+++.++.. ++... ...|++++++..++.+|..+|+++.|.+.+.++....++
T Consensus 11 lG~~~~~~g~~~~A~~~--------~~~al-----------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 71 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRA--------YKKVL-----------KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71 (184)
T ss_dssp HHHHHHHHTCHHHHHHH--------HHHHH-----------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCHHHHHHH--------HHHHH-----------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch
Confidence 46778899999877762 22111 124678999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHH
Q psy3174 129 HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMV 205 (265)
Q Consensus 129 ~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~ 205 (265)
+.......+++.... +++++|...++++....|.++..+..+|.++..+|++++|...++++++. +++++.+++.
T Consensus 72 ~~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 149 (184)
T 3vtx_A 72 SAEAYYILGSANFMI--DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL 149 (184)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence 987776666665555 78999999999999999999999999999999999999999999999987 7778999999
Q ss_pred HHHHcCCCCccC
Q psy3174 206 TAGRLGKGNEMS 217 (265)
Q Consensus 206 ~~~~~Gk~~ea~ 217 (265)
++..+|+.+++.
T Consensus 150 ~~~~~g~~~~A~ 161 (184)
T 3vtx_A 150 AYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHCCCHHHHH
Confidence 999999987654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.3e-13 Score=115.58 Aligned_cols=204 Identities=10% Similarity=0.019 Sum_probs=100.7
Q ss_pred cchhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHh
Q psy3174 9 VDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYL 81 (265)
Q Consensus 9 ~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l 81 (265)
.+.+|.. +..+..|+|.+|+..++++....|+. ......+..++..+|+++.++..+ .+....++..++..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3344544 66777899999998876655444432 233445577888899887665544 232334444444443
Q ss_pred cCCCcCcc---------cccCCCHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q psy3174 82 SIPSKNGS---------SNFGTHLEINALK--------------IH-TYLTMYRNDLALKELKVMQDKDEDHTLTQLCSA 137 (265)
Q Consensus 82 ~~~~~~e~---------~~~~~~lE~~al~--------------v~-~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a 137 (265)
...++.+. ...|.+.+..... +. ++...|+++.|.+.++++++.+|++..+....+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 32222111 1112222222221 22 344445555555555555555554443333333
Q ss_pred HHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 138 WVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 138 ~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
++.... |++++|...|+++.+..|.++..+..+|.++..+|++++|...++++++. +++++.+++.++..+|+..
T Consensus 180 ~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLS--NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHh--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 333323 44555555555555555555555555555555555555555555555544 3444555555555555544
Q ss_pred c
Q psy3174 215 E 215 (265)
Q Consensus 215 e 215 (265)
+
T Consensus 258 ~ 258 (327)
T 3cv0_A 258 L 258 (327)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=107.62 Aligned_cols=183 Identities=9% Similarity=0.001 Sum_probs=122.6
Q ss_pred ccCCcchhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC
Q psy3174 5 ADNEVDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI 83 (265)
Q Consensus 5 ~~~~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~ 83 (265)
+..+++.++.. ...|..|+|++|+..+++....+|........+...++..+|+++.++.. +....
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~--------~~~al----- 69 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADY--------FDIAI----- 69 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHH--------HHHHH-----
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHH--------HHHHH-----
Confidence 44456666666 55666788888888875544433311113345567778888888766652 11111
Q ss_pred CCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH--HHHHHHHHHHH---hccccHHHHHHHHHHH
Q psy3174 84 PSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL--TQLCSAWVHIA---NNVDKLNEAFYTLQDL 158 (265)
Q Consensus 84 ~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l--~~la~a~v~l~---~g~~~~~eA~~~~~el 158 (265)
...|++.+....++.+|..+|+++.|.+.++++++.+|++.. ..++.+|.+++ ...|++++|...|+++
T Consensus 70 ------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 70 ------KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp ------HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 123556778888888888888888888888888888887762 23333344333 2337788888888888
Q ss_pred HhhcCC--CHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHhcC---CHHHHHHHHHH
Q psy3174 159 IDKYGS--TPMLVNAQVAVLIAQDKY---------------------------EEAWDLLQDTAGD---SEDTLINNMVT 206 (265)
Q Consensus 159 ~~~~p~--t~~lLn~~A~~~~~~g~~---------------------------eEAe~~l~~al~~---~pdtl~nl~~~ 206 (265)
....|. .+..+.++|.+++.+|+. ++|...++++++. +++++..+..+
T Consensus 144 l~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 144 TDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 888887 778888888888888888 7888888888877 55555555444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=121.54 Aligned_cols=208 Identities=11% Similarity=-0.094 Sum_probs=159.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
.-..-.|++.+++..++++....|+. ......+...|...|+++.++..+ .+....++..++..+...++.+.
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRHPEK-AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44567899999998876554434432 223344567889999998666544 23334455555555444333222
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...|++......++.+|...|++++|.+.|+++++.+|+++.+....+++.... |++++|..+|+++.+
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK--SDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 235788899999999999999999999999999999999987777777776655 789999999999987
Q ss_pred h------cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCC
Q psy3174 161 K------YGST-PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSP 220 (265)
Q Consensus 161 ~------~p~t-~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~h 220 (265)
. .|+. ...++.+|.++..+|++++|...++++++. ++.++.+++.++...|+..++. |++
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 7 4443 679999999999999999999999999987 7789999999999999987754 887
Q ss_pred hhhhcH
Q psy3174 221 PFLFRS 226 (265)
Q Consensus 221 p~~~~~ 226 (265)
+.+...
T Consensus 584 ~~~~~~ 589 (597)
T 2xpi_A 584 IMASDL 589 (597)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 765544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-11 Score=100.19 Aligned_cols=190 Identities=12% Similarity=-0.015 Sum_probs=142.5
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCC
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGT 94 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~ 94 (265)
....+..|+|.+|+..+++.....|+. ......+..+|..+|+++.++.. +..... ..|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~-----------~~~~ 74 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQES--------FRQALS-----------IKPD 74 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHH--------HHHHHH-----------hCCC
Confidence 366778899999999876554444432 22345557888899998866652 221111 1245
Q ss_pred CHHHHHHHHHHHHHc-CChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 95 HLEINALKIHTYLTM-YRNDLALKELKVMQD--KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 95 ~lE~~al~v~~~l~~-~r~d~Aek~l~~~~~--~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
+.+....++.++..+ |+++.|.+.++++++ ..++........+++.... |++++|...|+++....|.++..+..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 152 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ--GQFGLAEAYLKRSLAAQPQFPPAFKE 152 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 678889999999999 999999999999998 5555555555555555444 78999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD----SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+|.++..+|++++|...++++++. +++.+..++.++...|+..++. |++|.+..+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999876 4557777777777787765432 777766554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.44 E-value=9e-12 Score=113.93 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=145.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTH 95 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~ 95 (265)
...+-.|+|.+|+..++++....|+. ......+.++|..+|+++.++.. +..... ..|++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~-----------~~p~~ 93 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPD--------LTKVIQ-----------LKMDF 93 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHCCCHHHHHHH--------HHHHHh-----------cCCCc
Confidence 55667799999998876554444433 23345557788888988876652 111111 13567
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH---HHHHHH------------HHHHHHhccccHHHHHHHHHHHHh
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT---LTQLCS------------AWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~---l~~la~------------a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
......++.+|..+|+++.|.+.|+++++.+|++. ...... +.+.. ..|++++|...|+++..
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF--GSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999876 332221 22222 33789999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhc
Q psy3174 161 KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFR 225 (265)
Q Consensus 161 ~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~ 225 (265)
..|.++.+++.+|.++..+|++++|...+.++++. +++++.+++.++...|+..++. |+++.+..
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 249 (450)
T 2y4t_A 172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 99999999999999999999999999999999886 7889999999999999987764 88887643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-12 Score=121.56 Aligned_cols=208 Identities=9% Similarity=-0.063 Sum_probs=160.8
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
...+..|+|.+|+..+++....+|. ......+.++|..+|+++.++..+ .+....++..++..+...++.+.
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 4466789999999998665554554 445566678899999988655544 22223444555555444443322
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...|.+.+....++.++...|+++.|.+.++++++..|++..+....+++.... |++++|...|+++..
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK--NDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
Confidence 235788899999999999999999999999999999988876666666665555 789999999999998
Q ss_pred hcCCCH------HHHHHHHHHHHH---cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------C
Q psy3174 161 KYGSTP------MLVNAQVAVLIA---QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------V 218 (265)
Q Consensus 161 ~~p~t~------~lLn~~A~~~~~---~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p 218 (265)
..|.++ ..+..+|.++.. +|++++|...++++++. +++++.+++.++..+|+..++. |
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 887654 388999999999 99999999999999987 6778899999999999987764 8
Q ss_pred CChhhhcHH
Q psy3174 219 SPPFLFRSD 227 (265)
Q Consensus 219 ~hp~~~~~~ 227 (265)
+++.+....
T Consensus 481 ~~~~~~~~~ 489 (514)
T 2gw1_A 481 TMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 888776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-12 Score=112.15 Aligned_cols=198 Identities=10% Similarity=-0.027 Sum_probs=148.3
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH-HHHHHHH------------
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE-LSCIKVL------------ 77 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~-l~~~~~~------------ 77 (265)
...+..|+|.+|+..+++....+|+. ......+.++|..+|+++.++..+ ..|. ......+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHH
Confidence 55677899999999976655444443 234555678899999998666543 1111 1111111
Q ss_pred --HH-HhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc
Q psy3174 78 --AE-YLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV 145 (265)
Q Consensus 78 --A~-~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~ 145 (265)
+. .+...++.+. ...|++.+....++.++..+|+++.|.+.++++++.+|++..+....+++....
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 219 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-- 219 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--
Confidence 21 0111111111 224788999999999999999999999999999999999887766666665555
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--C-------------HHHHHHHHHHHHHc
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--S-------------EDTLINNMVTAGRL 210 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~-------------pdtl~nl~~~~~~~ 210 (265)
|++++|...|+++.+..|.++..+..+|.++..+|++++|...++++++. + +.++.+++.++..+
T Consensus 220 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999987 2 45778999999999
Q ss_pred CCCCcc
Q psy3174 211 GKGNEM 216 (265)
Q Consensus 211 Gk~~ea 216 (265)
|+..++
T Consensus 300 g~~~~A 305 (327)
T 3cv0_A 300 NRPDLV 305 (327)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 987654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=114.96 Aligned_cols=196 Identities=10% Similarity=-0.054 Sum_probs=146.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH-HHHH----------HHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE-LSCI----------KVLAE 79 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~-l~~~----------~~~A~ 79 (265)
.-.+..|+|.+|+..+++.....|+. ......+.++|..+|+++.++..+ ..|. .... ..++.
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence 55667899999999986655444443 234555678899999998766544 1222 1111 11233
Q ss_pred HhcCCCcCcc---------cccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccH
Q psy3174 80 YLSIPSKNGS---------SNFGT--HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKL 148 (265)
Q Consensus 80 ~l~~~~~~e~---------~~~~~--~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~ 148 (265)
.+...++.+. ...|+ +.+....++.+|..+|+++.|.+.|+++++.+|++..+....+.+.... |++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~ 263 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG--DRS 263 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCH
Confidence 3322222211 22366 8899999999999999999999999999999999886666666555544 789
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHcCCC
Q psy3174 149 NEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS---------------EDTLINNMVTAGRLGKG 213 (265)
Q Consensus 149 ~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~---------------pdtl~nl~~~~~~~Gk~ 213 (265)
++|...|+++.+.+|.++..++.+|.++..+|++++|...++++++.+ +.++.+++.++..+|+.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999999999999999999999999999999999999999999999872 34678999999999986
Q ss_pred C
Q psy3174 214 N 214 (265)
Q Consensus 214 ~ 214 (265)
+
T Consensus 344 ~ 344 (365)
T 4eqf_A 344 E 344 (365)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-11 Score=97.23 Aligned_cols=150 Identities=11% Similarity=-0.023 Sum_probs=123.1
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.....+.+...|+++.++..+ -.. ....|++.+....++.++...|+++.|.+.++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~-----------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLL-----------EQV--------YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-----------TTT--------CCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHH-----------HHH--------HHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344567788888887665521 000 0234567889999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
+|++..+....+.+.... +++++|...|+++...+|.++..+..+|.++..+|++++|..++.++++. ++.++.+
T Consensus 72 ~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQV--QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp CTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 998887666666665555 78999999999999999999999999999999999999999999999987 6778999
Q ss_pred HHHHHHHcCCCCcc
Q psy3174 203 NMVTAGRLGKGNEM 216 (265)
Q Consensus 203 l~~~~~~~Gk~~ea 216 (265)
++.++..+|+..++
T Consensus 150 la~~~~~~~~~~~A 163 (186)
T 3as5_A 150 IAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 99999999987654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=114.85 Aligned_cols=203 Identities=9% Similarity=0.026 Sum_probs=158.2
Q ss_pred hccHHHHHHHHhhccc-----C--Ch------hhhhhHHHHHHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhc
Q psy3174 21 LGNYQQCIKEGQRLKA-----T--DP------KVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLS 82 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~-----~--~~------~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~ 82 (265)
.|+|.+|+..+++... . .| .........+.+++..+|+++.++..+ ..|...++..++..+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA 281 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence 7999999998755433 2 21 223344555678899999998766554 1222555666676665
Q ss_pred CCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHH
Q psy3174 83 IPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFY 153 (265)
Q Consensus 83 ~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~ 153 (265)
..++.+. ...|++.+....++.++..+|+++.|.+.++++++.+|++..+....+++.... |++++|..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~ 359 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE--NKFDDCET 359 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT--TCHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc--CCHHHHHH
Confidence 5554432 345888999999999999999999999999999999999876655555554434 78999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHH------HHHHHHHHHHH---cCCCCccC----
Q psy3174 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SED------TLINNMVTAGR---LGKGNEMS---- 217 (265)
Q Consensus 154 ~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pd------tl~nl~~~~~~---~Gk~~ea~---- 217 (265)
.|+++....|.++..++.+|.++..+|++++|...+.++++. +++ ++.+++.++.. +|+..++.
T Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 360 LFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999987 433 88999999999 99887654
Q ss_pred ------CCChhhhc
Q psy3174 218 ------VSPPFLFR 225 (265)
Q Consensus 218 ------p~hp~~~~ 225 (265)
|+++.+..
T Consensus 440 ~a~~~~~~~~~~~~ 453 (514)
T 2gw1_A 440 KASKLDPRSEQAKI 453 (514)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHHhCcccHHHHH
Confidence 88776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-12 Score=122.05 Aligned_cols=208 Identities=9% Similarity=-0.061 Sum_probs=126.3
Q ss_pred cchhHHHHHhhhhcc---------------HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccCh-hHHhhhcCChHHH
Q psy3174 9 VDELFDVRNSYYLGN---------------YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKY-KVVLEEKLPEELS 72 (265)
Q Consensus 9 ~delf~vr~~fy~G~---------------Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~-~~~l~ei~~~~l~ 72 (265)
.++|+..+..||..+ +.+++..++......++ .........++|..+|++ +.++..+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~------ 126 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQV-EAQALMLKGKALNVTPDYSPEAEVLL------ 126 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHTSSSSCCHHHHHHH------
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHhccccHHHHHHHH------
Confidence 455666666666533 33444443322223332 233445556777788887 6555521
Q ss_pred HHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-------
Q psy3174 73 CIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV------- 145 (265)
Q Consensus 73 ~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~------- 145 (265)
+... ...|++.+++..++.+|..+|++++|.+.|+++++.+|+ ..+....+++.. ..
T Consensus 127 --~~al-----------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~--~~~~~~~~~ 190 (474)
T 4abn_A 127 --SKAV-----------KLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLR--QLQTDSGDE 190 (474)
T ss_dssp --HHHH-----------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHT--TCCCSCHHH
T ss_pred --HHHH-----------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHH--HhccCChhh
Confidence 1111 113556777777777777777777777777777777776 333333333322 23
Q ss_pred --ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcCCH------HHHHHHHHHHHH
Q psy3174 146 --DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ--------DKYEEAWDLLQDTAGDSE------DTLINNMVTAGR 209 (265)
Q Consensus 146 --~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~--------g~~eEAe~~l~~al~~~p------dtl~nl~~~~~~ 209 (265)
+++++|...|+++.+..|.++..++.+|.+++.+ |++++|...++++++.+| +++.|++.++..
T Consensus 191 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~ 270 (474)
T 4abn_A 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY 270 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777 777777777777777543 467777777777
Q ss_pred cCCCCccC----------CCChhhhcH----HHHHHHHHHHHhh
Q psy3174 210 LGKGNEMS----------VSPPFLFRS----DETTATLDACGLQ 239 (265)
Q Consensus 210 ~Gk~~ea~----------p~hp~~~~~----~~~~~~FD~~~~~ 239 (265)
+|+..++. |+++.+... ......+++....
T Consensus 271 ~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 271 EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776654 777654432 2233444544443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-12 Score=106.99 Aligned_cols=193 Identities=13% Similarity=0.016 Sum_probs=146.4
Q ss_pred hccHHHHHHHHhhcccC---ChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc--
Q psy3174 21 LGNYQQCIKEGQRLKAT---DPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS-- 89 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~---~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~-- 89 (265)
.|+|.+|+..++++... ++.........+.++|..+|+++.++..+ .+....++..++..+...++.+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 48899999987555432 33344555666788899999998766544 33335555566665554444322
Q ss_pred -------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 90 -------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 90 -------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
...|++.+....++.+|..+|+++.|.+.++++++.+|++....+. ..+....+++++|...|++.....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW---LYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHH---HHHHHHhcCHHHHHHHHHHHHhcC
Confidence 2347889999999999999999999999999999999998754433 333334488999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCccC
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS-------EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~-------pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|.+...++ ++.+++..+++++|...+.++++.+ ++++.+++.++..+|+..++.
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 87766554 7778889999999999999999883 467889999999999987765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-13 Score=106.13 Aligned_cols=109 Identities=6% Similarity=-0.038 Sum_probs=56.2
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHH
Q psy3174 105 TYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEE 184 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eE 184 (265)
++...|++|.|...++++...+|++....+..|.+.+.. +++++|...|+++....|.++..++.+|.|+..+|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA--KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 444445555555555555555555544443333333333 445555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 185 AWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 185 Ae~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
|...++++++. +|+++.+++.++..+|+..+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 55555555554 44455555555555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=106.37 Aligned_cols=178 Identities=15% Similarity=0.105 Sum_probs=132.1
Q ss_pred HHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCC---HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 45 KDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTH---LEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 45 ~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~---lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
..+...+.++..|+++.++.. +-..+. .+|++ .++.+.++.+|..+|+++.|.+.|++
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~-----------~~~~l~--------~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 77 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEY-----------FKAVFT--------YGRTHEWAADAQFYLARAYYQNKEYLLAASEYER 77 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH-----------HHHHGG--------GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH-----------HHHHHH--------hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 456778889999999876662 222222 22344 89999999999999999999999999
Q ss_pred HHccCCCcHHH---HHHHHHHHHH------hccccHHHHHHHHHHHHhhcCCCHHHH-----------------HHHHHH
Q psy3174 122 MQDKDEDHTLT---QLCSAWVHIA------NNVDKLNEAFYTLQDLIDKYGSTPMLV-----------------NAQVAV 175 (265)
Q Consensus 122 ~~~~~~d~~l~---~la~a~v~l~------~g~~~~~eA~~~~~el~~~~p~t~~lL-----------------n~~A~~ 175 (265)
+++..|++... ....+.+.+. ...+++++|...|+++...+|+++... ..+|.+
T Consensus 78 ~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 78 FIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998865322 2222333332 015889999999999999999876544 678999
Q ss_pred HHHcCCHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCC----------CCccC----------CCChhhhcHHHH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGDS------EDTLINNMVTAGRLGK----------GNEMS----------VSPPFLFRSDET 229 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~~------pdtl~nl~~~~~~~Gk----------~~ea~----------p~hp~~~~~~~~ 229 (265)
++.+|+|++|...++++++.+ ++.+.+++.++..+|. ..++. |+||++......
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEEL 237 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 999999999999999999873 4488999999998854 34433 999988776655
Q ss_pred HHHHHHHHhhcc
Q psy3174 230 TATLDACGLQSN 241 (265)
Q Consensus 230 ~~~FD~~~~~~~ 241 (265)
....-+-..+|.
T Consensus 238 l~~~~~~~~~~~ 249 (261)
T 3qky_A 238 YTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 544444444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-11 Score=121.56 Aligned_cols=154 Identities=7% Similarity=-0.114 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy3174 43 LEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVM 122 (265)
Q Consensus 43 ~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~ 122 (265)
.+....+..+|..+|+++.++.. ++... ...|++.++...++.+|..+||+++|.+.|+++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~--------~~kAl-----------~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRL--------YRKAL-----------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH--------HHHHH-----------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH--------HHHHH-----------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556667889999999877662 22111 124678899999999999999999999999999
Q ss_pred HccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHH
Q psy3174 123 QDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDT 199 (265)
Q Consensus 123 ~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdt 199 (265)
++++|++..+....+.+.... |++++|...|+++.+..|+.+..++++|.++..+|++++|...+++|+++ +++.
T Consensus 70 l~l~P~~~~a~~nLg~~l~~~--g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 70 IRISPTFADAYSNMGNTLKEM--QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 999999985554444444434 78999999999999999999999999999999999999999999999998 7779
Q ss_pred HHHHHHHHHHcCCCCccC
Q psy3174 200 LINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 200 l~nl~~~~~~~Gk~~ea~ 217 (265)
+.|++.++..+|+..++.
T Consensus 148 ~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHHHHHHHTTCCTTHH
T ss_pred HhhhhhHHHhcccHHHHH
Confidence 999999999999998753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.3e-11 Score=92.98 Aligned_cols=162 Identities=12% Similarity=0.051 Sum_probs=130.6
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCC
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGT 94 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~ 94 (265)
....+..|+|.+|+..+++.....|+. ......+.+++..+|+++.++.. +..... ..|.
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~ 74 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADAFD-VDVALHLGIAYVKTGAVDRGTEL--------LERSLA-----------DAPD 74 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTSCC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCccC-hHHHHHHHHHHHHcCCHHHHHHH--------HHHHHh-----------cCCC
Confidence 356677899999999987666555543 23445567889999998876652 121111 1345
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+.++...++.++...|+++.|.+.++++.+..|++.......+++.... |++++|...|+++....|.++..+..+|.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 152 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL--GRFDEAIDSFKIALGLRPNEGKVHRAIAF 152 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc--CcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 7789999999999999999999999999999999887776666666555 78999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
++..+|++++|...++++++.+|+
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999887443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-12 Score=127.12 Aligned_cols=134 Identities=13% Similarity=-0.039 Sum_probs=118.4
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.+++..++.+|..+||+++|.+.|+++++++|++..+....+.+.... |++++|...|+++.+..|+.+..++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~--g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--GKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35788999999999999999999999999999999999986555555444434 8899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
++|.++..+|++++|...+++|+++ +++++.|++.++..+|+.++++ |+++.+...
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence 9999999999999999999999998 6779999999999999998765 999876544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=114.99 Aligned_cols=172 Identities=9% Similarity=-0.027 Sum_probs=110.8
Q ss_pred ccHHHHHHHHhhcccCChhhh------hhHHHHHHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhcCCCcCcc-
Q psy3174 22 GNYQQCIKEGQRLKATDPKVL------LEKDFYVCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLSIPSKNGS- 89 (265)
Q Consensus 22 G~Y~~~i~~~~~~~~~~~~~~------~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~~~~~~e~- 89 (265)
|.|.+|+..++++....|+.. ........+++...|+++.++..+ ..|...++..++..+...++.+.
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 578888877655554444321 222334456677788877665544 22335555566666655554332
Q ss_pred --------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 90 --------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 90 --------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
...|++.+....++.++..+|+++.|.+.++++++.+|++..+....+++.... |++++|..+|+++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ--GKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Confidence 224677777777777777777777777777777777777665555555554444 6677777777777777
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+|.++..+..+|.++..+|++++|...++++++.
T Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7777777777777777777777777777777665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=96.06 Aligned_cols=112 Identities=12% Similarity=-0.002 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|+..|....++.+|...|++++|.+.|+++++++|++..+....+.+.... |++++|...|+++.+..|..+..+..+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL--MEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh--ccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 566778888999999999999999999999999999986655555555545 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVT 206 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~ 206 (265)
|.++..+|++++|...+++++++ ++++..++..|
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999998 66677777665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-11 Score=100.42 Aligned_cols=148 Identities=11% Similarity=-0.050 Sum_probs=122.1
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.+...++++.+|+++.++.. +......- . +.+....+.++.++..+|+++.|.+.++++++.
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~--------~~~al~~~-~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 71 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEK--------YSEYLKLT-N---------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK 71 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHH--------HHHHHHHT-T---------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHH--------HHHHHhcc-C---------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 45567889999999877762 22221110 0 145578888999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP-------MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~-------~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
+|++..+....+++.... |++++|...|+++....|.++ ..+..+|.++..+|++++|...++++++.+|+
T Consensus 72 ~p~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDM--KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp TCSHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred CcchHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999887777777776655 789999999999999999988 56999999999999999999999999998554
Q ss_pred -----HHHHHHHHHHHcCCC
Q psy3174 199 -----TLINNMVTAGRLGKG 213 (265)
Q Consensus 199 -----tl~nl~~~~~~~Gk~ 213 (265)
++.+++.++..+|+.
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 668999999999886
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=105.64 Aligned_cols=188 Identities=16% Similarity=0.189 Sum_probs=142.4
Q ss_pred CcchhHHH-HHhhhhccHHHHHHHHhhcccCChhh--hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCC
Q psy3174 8 EVDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKV--LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIP 84 (265)
Q Consensus 8 ~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~--~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~ 84 (265)
+++.+|.. ...|-.|+|.+|+..++++....|+. ..+..+.+..+|..+|+++.++.. +..+... .
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~--------~~~~l~~--~- 82 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASE--------YERFIQI--Y- 82 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHH--C-
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHH--------HHHHHHH--C-
Confidence 45556666 67778899999999987776555543 245667778999999999977762 2222221 0
Q ss_pred CcCcccccCCCHHHHHHHHHHHHH--------cCChHHHHHHHHHHHccCCCcHHHH-----------------HHHHHH
Q psy3174 85 SKNGSSNFGTHLEINALKIHTYLT--------MYRNDLALKELKVMQDKDEDHTLTQ-----------------LCSAWV 139 (265)
Q Consensus 85 ~~~e~~~~~~~lE~~al~v~~~l~--------~~r~d~Aek~l~~~~~~~~d~~l~~-----------------la~a~v 139 (265)
.+.+...+.++.++.++.. +|+++.|.+.|+++++..|++.... +..+++
T Consensus 83 -----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 83 -----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp -----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223557889999999999 9999999999999999999886555 233444
Q ss_pred HHHhccccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCHH------HH
Q psy3174 140 HIANNVDKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQ----------DKYEEAWDLLQDTAGDSED------TL 200 (265)
Q Consensus 140 ~l~~g~~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~----------g~~eEAe~~l~~al~~~pd------tl 200 (265)
.... |++++|...|+++...+|+ .+..+..+|.++..+ |++++|...++++++.+|+ ..
T Consensus 158 ~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 235 (261)
T 3qky_A 158 YERR--ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAE 235 (261)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHc--cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 4434 8899999999999999997 455899999999987 9999999999999998554 44
Q ss_pred HHHHHHHHHcCCC
Q psy3174 201 INNMVTAGRLGKG 213 (265)
Q Consensus 201 ~nl~~~~~~~Gk~ 213 (265)
..+..+...+|+.
T Consensus 236 ~~l~~~~~~~~~~ 248 (261)
T 3qky_A 236 ELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666666654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=7.5e-11 Score=98.40 Aligned_cols=174 Identities=10% Similarity=0.039 Sum_probs=133.7
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTH 95 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~ 95 (265)
.-.+..|+|.+|+..+++.....|.. ......+.++|..+|+++.++.. +..... ..+.+
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~~ 124 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNVYVVKEMYKEAKDM--------FEKALR-----------AGMEN 124 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHhccHHHHHHH--------HHHHHH-----------hCCCC
Confidence 45677899999999976654444432 23345557889999998876652 121111 12456
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
.+....++.++..+|+++.|.+.++++++..|++.......+.+.... |++++|...|+++....|.++..+..+|.+
T Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 202 (243)
T 2q7f_A 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE--GMLDEALSQFAAVTEQDPGHADAFYNAGVT 202 (243)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 788999999999999999999999999999999887766666666555 789999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
+..+|++++|...++++++. ++.+..++..+....|
T Consensus 203 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 203 YAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999988 5566666665554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-12 Score=102.45 Aligned_cols=107 Identities=8% Similarity=-0.149 Sum_probs=95.1
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
...|++++.++.++.++..+||+++|.+.|+++++.+|+++......+.+.... |++++|...|+++....|+++..+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--EQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCCCCcHHH
Confidence 445889999999999999999999999999999999999986555554444434 889999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.++|.|+..+|++++|...++++++..|+
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=113.89 Aligned_cols=207 Identities=10% Similarity=-0.069 Sum_probs=159.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
.-.+..|+|.+|+..+++....+|+ ......+.+++..+|+++.++..+ .+....++..++..+...++.+.
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 4456688999999997666555555 345666788899999998766544 33334555566665554444322
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...|++.+....++.++..+|+++.|.+.++++++.+|++..+....+++.... |++++|...|+++..
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR--GDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 234888899999999999999999999999999999999887766666666555 789999999999987
Q ss_pred hcCC------CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----
Q psy3174 161 KYGS------TPMLVNAQVAVLIAQ----------DKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS---- 217 (265)
Q Consensus 161 ~~p~------t~~lLn~~A~~~~~~----------g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~---- 217 (265)
..|. ....+..+|.++..+ |++++|...++++++. +++++.+++.++..+|+..++.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7653 223467789999999 9999999999999987 6779999999999999988765
Q ss_pred ------CCChhhhcH
Q psy3174 218 ------VSPPFLFRS 226 (265)
Q Consensus 218 ------p~hp~~~~~ 226 (265)
|+++.....
T Consensus 487 ~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 487 DSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHC--CHHHHHH
T ss_pred HHHHhCCCcHHHHHH
Confidence 777766554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-11 Score=101.94 Aligned_cols=179 Identities=15% Similarity=0.049 Sum_probs=132.6
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhh------hhhHHHHHHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhcCC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKV------LLEKDFYVCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLSIP 84 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~------~~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~~~ 84 (265)
.-.+..|+|++|+..+++.....|+. .......+.++|..+|+++.++..+ ..|..........+-...
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHH
Confidence 56778999999999975544333322 1345566678899999998766543 111111111111110000
Q ss_pred CcC--cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 85 SKN--GSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 85 ~~~--e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
... .....|...+....++.++...|+++.|.+.++++++.+|+++.+....+.+.+.. |++++|...|+++.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--MSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhC
Confidence 000 00234678899999999999999999999999999999999887766666665555 78999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS 196 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~ 196 (265)
|..+..+..+|.++..+|++++|...++++++.+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-11 Score=88.85 Aligned_cols=119 Identities=10% Similarity=-0.083 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+...+.....+.++..+|+++.|.+.++++++.+|++.......+++.... +++++|...|+++....|.++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL--GNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--hchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 456788899999999999999999999999999999887666666665545 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
|.++..+|++++|...+.++++. ++.+..+++.++..+|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987 677889999999999875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=98.40 Aligned_cols=119 Identities=12% Similarity=-0.006 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++....+.++.+|..+|+++.|.+.|+++++++|+++.+....+.+.... |++++|...|+++.+..|.++.+++.+
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE--ENTDKAVECYRRSVELNPTQKDLVLKI 105 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 456677788999999999999999999999999999987666666665545 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHH-HHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 173 VAVLIAQDKYEEAWD-LLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 173 A~~~~~~g~~eEAe~-~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
|.++..+|++++|.. .+++|++. ||++......++...|++
T Consensus 106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 106 AELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence 999999999988765 46899987 777877788888888864
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=98.32 Aligned_cols=180 Identities=9% Similarity=-0.035 Sum_probs=139.7
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
+..+..|+|.+|+..+++.....|+. ......+.++|...|+++.++..+ .+.....+..++..+...++.+.
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 55677899999999876554444433 234455678899999998666544 23334445555554443333221
Q ss_pred ---------c--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q psy3174 90 ---------S--NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL 158 (265)
Q Consensus 90 ---------~--~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el 158 (265)
. ..+...+....++.++..+|++++|.+.++++++.+|++..+....+.+.... |++++|...|+++
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE--REYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 2 45778899999999999999999999999999999999887766666665555 7899999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 159 IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 159 ~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
....|.++..+..++.++..+|++++|..+++++++.+|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999988444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-11 Score=89.71 Aligned_cols=119 Identities=11% Similarity=-0.067 Sum_probs=104.8
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.+.+...+..++.++...|+++.|.+.++++++.+|++..+....+.+... .+++++|...|+++....|.++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK--LLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT--TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 477889999999999999999999999999999999887655555555433 388999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
+|.++..+|++++|...++++++. +++...+++.++..+|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999988 45578899988888774
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=101.42 Aligned_cols=118 Identities=11% Similarity=0.018 Sum_probs=103.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHH----------------HHHHHHHhccccHHHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLC----------------SAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la----------------~a~v~l~~g~~~~~eA~~~~~e 157 (265)
.+.+.+...+.+++..|+++.|.+.|+++++.+|+++..... .+.+.... |++++|...|++
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~ 79 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN--RNYDKAYLFYKE 79 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 467888899999999999999999999999999998755444 44444434 789999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
+....|.++..+..+|.+++.+|++++|...++++++. +++++.+++.++..+|..
T Consensus 80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999998 677999999999887753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-10 Score=85.94 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+.+.....+.++...|+++.|.+.++++++.+|++..+....+.+.... +++++|..+|+++....|.++..+..+|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 3678889999999999999999999999999998876655555554444 78999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
++..+|++++|...++++++. ++++..+++.+...+|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999987 6778899998887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-11 Score=110.53 Aligned_cols=184 Identities=9% Similarity=-0.009 Sum_probs=130.9
Q ss_pred hccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccC-hhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHH
Q psy3174 21 LGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKK-YKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEIN 99 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~-~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~ 99 (265)
.|+|.+|+..++++-..+|+.. ..-.+...++..+|+ ++.++.. ++... ...|++.++.
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~-~a~~~~g~~l~~~g~d~~eAl~~--------~~~al-----------~l~P~~~~a~ 169 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANY-TVWHFRRVLLKSLQKDLHEEMNY--------ITAII-----------EEQPKNYQVW 169 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCCHHHHHHH--------HHHHH-----------HHCTTCHHHH
T ss_pred CCChHHHHHHHHHHHHhCccCH-HHHHHHHHHHHHcccCHHHHHHH--------HHHHH-----------HHCCCCHHHH
Confidence 4778888888766555555532 223444556777886 7766552 11111 2346678888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA- 178 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~- 178 (265)
..++.++..+|++++|.+.|+++++++|++.-+....+|+.... |++++|+..|+++....|..+..++.+|.++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~--g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF--KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888886655555554444 678888888888888888888888888888888
Q ss_pred cCCHHHH-----HHHHHHHhcC---CHHHHHHHHHHHHHcCC--CCccC---------CCChhhhcH
Q psy3174 179 QDKYEEA-----WDLLQDTAGD---SEDTLINNMVTAGRLGK--GNEMS---------VSPPFLFRS 226 (265)
Q Consensus 179 ~g~~eEA-----e~~l~~al~~---~pdtl~nl~~~~~~~Gk--~~ea~---------p~hp~~~~~ 226 (265)
.|++++| ...+.+++.+ ++..+.|++.++..+|. ..+++ |+++++...
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~ 314 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAF 314 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHH
Confidence 5555777 4788888887 55678888888888773 33322 777776553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-11 Score=117.29 Aligned_cols=172 Identities=13% Similarity=0.006 Sum_probs=135.1
Q ss_pred hhhccHHHHHHHHhhcc--------cCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCccc
Q psy3174 19 YYLGNYQQCIKEGQRLK--------ATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSS 90 (265)
Q Consensus 19 fy~G~Y~~~i~~~~~~~--------~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~ 90 (265)
+-.|+|++|++.+++.. ..+|+. .+..+...++|+.+|+++.++.. +.... .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~--------~~~al-----------~ 461 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES-VELPLMEVRALLDLGDVAKATRK--------LDDLA-----------E 461 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC-SHHHHHHHHHHHHHTCHHHHHHH--------HHHHH-----------H
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc-hhHHHHHHHHHHhcCCHHHHHHH--------HHHHh-----------c
Confidence 77899999998876554 344442 34456667889999999877762 11111 1
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.++.+.++.+|..+|++++|.+.|+++++.+|++.......+.+.... |++++ ...|+++....|.++..++
T Consensus 462 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~--g~~~~-~~~~~~al~~~P~~~~a~~ 538 (681)
T 2pzi_A 462 RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA--GNTDE-HKFYQTVWSTNDGVISAAF 538 (681)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH--TCCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--CChHH-HHHHHHHHHhCCchHHHHH
Confidence 24678899999999999999999999999999999999987766666665555 77999 9999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDS---EDTLINNMVTAGRLGKG 213 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~---pdtl~nl~~~~~~~Gk~ 213 (265)
++|.++..+|++++|...++++++.+ ++...|++.++...|+.
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999984 45778898888776653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-10 Score=97.71 Aligned_cols=171 Identities=11% Similarity=0.071 Sum_probs=122.4
Q ss_pred chhHHH-HHhhhhccHHHHHHHHhhcccCChhh--hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCc
Q psy3174 10 DELFDV-RNSYYLGNYQQCIKEGQRLKATDPKV--LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 10 delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~--~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~ 86 (265)
+.+|.. ...|-.|+|++|+..++++....|.. ..+..+.+..+|..+|+++.++... ..+... .+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~--------~~~l~~--~P-- 72 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAI--------DRFIRL--NP-- 72 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHH--------HHHHHH--CT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHHH--Cc--
Confidence 345654 67788999999999987766544433 3356677789999999999777632 111110 00
Q ss_pred CcccccCCCHHHHHHHHHHHHH------------------cCChHHHHHHHHHHHccCCCcHHHHHH-------------
Q psy3174 87 NGSSNFGTHLEINALKIHTYLT------------------MYRNDLALKELKVMQDKDEDHTLTQLC------------- 135 (265)
Q Consensus 87 ~e~~~~~~~lE~~al~v~~~l~------------------~~r~d~Aek~l~~~~~~~~d~~l~~la------------- 135 (265)
+.+...++++.++.++.. +|+++.|.+.|+++++..|++..+..+
T Consensus 73 ----~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 73 ----THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp ----TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 111122355555555554 689999999999999999998754322
Q ss_pred ----HHHHHHHhccccHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 136 ----SAWVHIANNVDKLNEAFYTLQDLIDKYGSTP---MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 136 ----~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~---~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+.+.+ ..|++++|...|+++...+|+++ ..+..+|.|+..+|++++|...++++....|+
T Consensus 149 ~~~~~a~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYT--ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHH--HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHH--HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 233333 33889999999999999999876 47899999999999999999999988776443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-12 Score=102.86 Aligned_cols=108 Identities=12% Similarity=-0.014 Sum_probs=92.8
Q ss_pred HcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3174 108 TMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWD 187 (265)
Q Consensus 108 ~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~ 187 (265)
++.++-.+...++++++++|+++-.....+++.... |++++|...|+++....|.++..++++|.|+..+|+|++|..
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNK--GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH
Confidence 333344455668888889999987766666665545 889999999999999999999999999999999999999999
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 188 LLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 188 ~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.++++++. +|+.+.|++.|+..+|+.+++.
T Consensus 92 ~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~ 124 (151)
T 3gyz_A 92 LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124 (151)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 99999998 7779999999999999988765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-11 Score=110.67 Aligned_cols=123 Identities=7% Similarity=-0.020 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDK-LNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~-~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
|+..+++..++.++..+|+++.|.+.++++++++|++..+....+.+.... |+ +++|+..|+++....|.++.+++.
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~--g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--QKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 444555555555555555555555555555555555553322222222222 43 555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+|+++..+|++++|...+++++++ +++++.|++.++..+|+..+++
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 555555555555555555555555 4445555555555555555443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=103.63 Aligned_cols=105 Identities=17% Similarity=0.022 Sum_probs=85.8
Q ss_pred cCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 92 FGTHLEINALK--IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 92 ~~~~lE~~al~--v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.|++....... +.++...||+++|.+.|+++++..|+++......+.+.+.. |++++|...|+++....|+++..+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ--GRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 36665433332 24444569999999999999999999987766666665555 789999999999999999999999
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDKYEE-AWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eE-Ae~~l~~al~~~pd 198 (265)
+++|.++..+|++++ |..+++++++.+|+
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999987 57899999988444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-10 Score=94.25 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=113.8
Q ss_pred cchhH-HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHH----------------HHHHHHcccChhHHhhhcCChHH
Q psy3174 9 VDELF-DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFY----------------VCRSYLAQKKYKVVLEEKLPEEL 71 (265)
Q Consensus 9 ~delf-~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~----------------~~Raylalg~~~~~l~ei~~~~l 71 (265)
++.++ .....+-.|+|.+|+..+++....+|++. +..++ +.++|..+|+++.++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~------ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT-EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF------ 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH-HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH------
Confidence 44544 34677888999999999876666666642 23344 56667777777665552
Q ss_pred HHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHH
Q psy3174 72 SCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEA 151 (265)
Q Consensus 72 ~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA 151 (265)
+.... ...|++.+.+..++.+|..+|+++.|.+.|+++++++|+++-+....+++....|.....++
T Consensus 77 --~~~al-----------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 77 --YKELL-----------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp --HHHHH-----------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHH-----------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 11111 12466788888888888888888888888888888888887666666665555555566677
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 152 FYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 152 ~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
...|+.+....| ....+...|.++..+|+|++|...++++++.+|+
T Consensus 144 ~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 144 ETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 777777653222 1224556788888888888888888888888555
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=109.52 Aligned_cols=124 Identities=7% Similarity=-0.142 Sum_probs=105.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRN-DLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~-d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
..+...+..+.++.++..+|++ ++|.+.|+++++.+|++.-+....+.+.... |++++|...|+++.+..|+ +..+
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~-~~~~ 173 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK--GDVTSAHTCFSGALTHCKN-KVSL 173 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHTTCCC-HHHH
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC-HHHH
Confidence 3457889999999999999999 9999999999999999876666666665555 7799999999999999888 6889
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc--------CCCCccC
Q psy3174 170 NAQVAVLIAQ---------DKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL--------GKGNEMS 217 (265)
Q Consensus 170 n~~A~~~~~~---------g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~--------Gk~~ea~ 217 (265)
..+|.++..+ |++++|...++++++. +++++.+++.++..+ |+..++.
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999999 9999999999999987 677889999999888 7766654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-10 Score=86.05 Aligned_cols=117 Identities=15% Similarity=0.003 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
+....++.++...|+++.|.+.++++++.+|++.......+.+.... +++++|...|+++....|.++..+..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh--cCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 45677889999999999999999999999888876555555554444 7899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 177 IAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
..+|++++|...+.++++. ++.++.+++.++..+|+..+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH
Confidence 9999999999999999886 67788899999998887543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=92.99 Aligned_cols=102 Identities=12% Similarity=-0.133 Sum_probs=91.7
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++++.++.++.++...|++++|.+.|+++++.+|++.......+.+.... |++++|...|+++....|+++..+..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM--GQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4678889999999999999999999999999999999986665555555444 78999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+|.|++.+|++++|...++++++.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999987
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=91.22 Aligned_cols=104 Identities=10% Similarity=-0.143 Sum_probs=93.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++++.++.++.++...|+++.|.+.|+++++.+|++.......+.+.... |++++|...|+++....|.++..+..
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL--GLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4678889999999999999999999999999999999987666666665545 78999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
+|.|+..+|++++|...++++++.+|
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998733
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-10 Score=93.75 Aligned_cols=132 Identities=10% Similarity=-0.001 Sum_probs=108.0
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHh--hcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLID--KYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~--~~p~t~~l 168 (265)
.|++.+....++.++..+|+++.|.+.+.++++.+|++..+....+.+.. .. |++++|...|+++.. ..|..+..
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 115 (225)
T 2vq2_A 38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC--GRLNRPAESMAYFDKALADPTYPTPYIA 115 (225)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--TTTCCHHHHHHHHHHHHTSTTCSCHHHH
T ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH--HhcCcHHHHHHHHHHHHcCcCCcchHHH
Confidence 47888899999999999999999999999999988888765555555543 44 679999999999988 55666778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------C-CChhhhc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------V-SPPFLFR 225 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p-~hp~~~~ 225 (265)
+..+|.++..+|++++|...+.++++. +++++.+++.++..+|+..++. | +++.+..
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 889999999999999999999999876 6778889999999999887765 7 7766543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-10 Score=92.43 Aligned_cols=112 Identities=5% Similarity=-0.129 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.+.+..++.++...|+++.|.+.|+++++.+|++.......+++.+.. +++++|...|+++....|..+..+..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS--GQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 456788999999999999999999999999999999987766666665555 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVT 206 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~ 206 (265)
|.+++.+|++++|...++++++. +++.+.+.+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999988 55555544433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-10 Score=96.94 Aligned_cols=200 Identities=11% Similarity=-0.029 Sum_probs=140.0
Q ss_pred hHHH-HHhhhhccHHHHHHHHhhcccCC--hhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhc
Q psy3174 12 LFDV-RNSYYLGNYQQCIKEGQRLKATD--PKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLS 82 (265)
Q Consensus 12 lf~v-r~~fy~G~Y~~~i~~~~~~~~~~--~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~ 82 (265)
++.+ ...+..|+|++|+..+++..... ++........+.++|..+|+++.++..+ .+....++..++..+.
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 4443 56778999999999976554422 2222333456688899999998776555 2333445556666555
Q ss_pred CCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccc-cHHHHH
Q psy3174 83 IPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD-KLNEAF 152 (265)
Q Consensus 83 ~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~-~~~eA~ 152 (265)
..++.+. ...|.+......++.+....++++.|.+.++++++.+|++.......+.+....|.. ++++|.
T Consensus 120 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHH
Confidence 4444322 345889999999994444556999999999999999999987777777776666432 288899
Q ss_pred HHHHHHHhhc---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 153 YTLQDLIDKY---GST-----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 153 ~~~~el~~~~---p~t-----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
..|+++.+.. |+. ...+..+|.++..+|++++|...++++++. +|...-.+..+....|
T Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999988765 442 257888999999999999999999999998 5555555555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-10 Score=81.50 Aligned_cols=111 Identities=12% Similarity=-0.043 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
..+.+...+.++...|+++.|.+.++++++.+|++.......+.+.... +++++|...++++....|.++..+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4677888999999999999999999999999998876666666665545 78999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTA 207 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~ 207 (265)
++..+|++++|...++++++. ++++..+++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999998 566666666553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-10 Score=97.61 Aligned_cols=159 Identities=14% Similarity=0.050 Sum_probs=110.2
Q ss_pred HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHH
Q psy3174 24 YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKI 103 (265)
Q Consensus 24 Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v 103 (265)
|++|+..++++...++.........+..+|..+|+++.++.-+ -+++...-.... .+.+....+...++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~~~~~~-------~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL----NDALAIREKTLG-------KDHPAVAATLNNLA 92 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHTC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHH----HHHHHHHHHHcC-------CcchHHHHHHHHHH
Confidence 4455555443333343334455666788899999998776621 011111111100 23356678899999
Q ss_pred HHHHHcCChHHHHHHHHHHHcc-----CC---CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------cCCCHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDK-----DE---DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK--------YGSTPM 167 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~-----~~---d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~--------~p~t~~ 167 (265)
.+|..+|+++.|.+.++++++. ++ +...+....+++.... |++++|...|+++... .|....
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ--GKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999987 23 3333333344444333 8899999999999876 455667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+..+|.++..+|++++|...++++++.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999975
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=94.15 Aligned_cols=149 Identities=15% Similarity=0.065 Sum_probs=118.0
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.+-..+.++..|+++.++..+ + +.....|++.+....++.++..+|++++|.+.++++++.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~--------~-----------~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVI--------Q-----------TLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH--------H-----------TSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHH--------H-----------HHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 344567778888877655521 1 001245788999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH-----HHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE-----DTL 200 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p-----dtl 200 (265)
+| ++......+++.+... ....+|...|+++....|+++..+..+|.++..+|++++|...++++++.+| ...
T Consensus 70 ~p-~~~~~~~~~~~~~~~~-~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~ 147 (176)
T 2r5s_A 70 YQ-DNSYKSLIAKLELHQQ-AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK 147 (176)
T ss_dssp GC-CHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHH
T ss_pred cC-ChHHHHHHHHHHHHhh-cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHH
Confidence 88 6544444455544322 2344689999999999999999999999999999999999999999999854 378
Q ss_pred HHHHHHHHHcCCCCc
Q psy3174 201 INNMVTAGRLGKGNE 215 (265)
Q Consensus 201 ~nl~~~~~~~Gk~~e 215 (265)
.+++.++..+|+.++
T Consensus 148 ~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 148 KTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHhCCCCc
Confidence 899999999999765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-10 Score=87.00 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
...+.+...+.++...|+++.|.+.|+++++.+|++.......+.+.+.. |++++|...|+++....|..+..+..+|
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--MSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 45678888999999999999999999999999999886665555555545 7899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCC
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGDS 196 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~~ 196 (265)
.+++.+|++++|...++++++.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=100.67 Aligned_cols=171 Identities=15% Similarity=0.064 Sum_probs=119.6
Q ss_pred hHHH-HHhhhhccHHHHHHHHhhcccC-------ChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC
Q psy3174 12 LFDV-RNSYYLGNYQQCIKEGQRLKAT-------DPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI 83 (265)
Q Consensus 12 lf~v-r~~fy~G~Y~~~i~~~~~~~~~-------~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~ 83 (265)
++.+ ...+..|+|.+|+..+++.... ++.........+.++|..+|+++.++..+ -+++...-....
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~----~~al~~~~~~~~- 104 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL----NDALAIREKTLG- 104 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH----HHHHHHHHHHhC-
Confidence 4444 5667789999999987554431 23334445566678899999998776621 111111111110
Q ss_pred CCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-----CCc---HHHHHHHHHHHHHhccccHHHHHHHH
Q psy3174 84 PSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD-----EDH---TLTQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 84 ~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~-----~d~---~l~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
...+....+...++.+|..+|+++.|.+.++++++.. +++ ..+....+.+.. ..|++++|..+|
T Consensus 105 ------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~ 176 (311)
T 3nf1_A 105 ------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ--NQGKYEEVEYYY 176 (311)
T ss_dssp ------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHH
T ss_pred ------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHH
Confidence 2234567888999999999999999999999999863 333 222233333333 348899999999
Q ss_pred HHHHhh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 156 QDLIDK--------YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 156 ~el~~~--------~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+++... .|.....++.+|.++..+|++++|...++++++.
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998776 4556668999999999999999999999999974
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-09 Score=94.03 Aligned_cols=205 Identities=12% Similarity=-0.016 Sum_probs=145.3
Q ss_pred CCcchhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHc----ccChhHHhhhc----CChHHHHHHHH
Q psy3174 7 NEVDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLA----QKKYKVVLEEK----LPEELSCIKVL 77 (265)
Q Consensus 7 ~~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Rayla----lg~~~~~l~ei----~~~~l~~~~~~ 77 (265)
++++.++.+ ...+..|+|.+|+..+++.....+ ......+.++|.. .++++.++.-+ ......+...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345556666 455667999999999755443222 1345666788888 89988666544 11123344445
Q ss_pred HHHhcC----CCcCcc-------cccCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q psy3174 78 AEYLSI----PSKNGS-------SNFGTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA 142 (265)
Q Consensus 78 A~~l~~----~~~~e~-------~~~~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~ 142 (265)
+..+.. .++.+. .-..++.++...++.+|.. .+++++|.+.|+++.+.++......++..+..-.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 160 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCC
Confidence 544433 222211 0114688999999999999 9999999999999999886555555555444211
Q ss_pred hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH----cCCC
Q psy3174 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR----LGKG 213 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~----~Gk~ 213 (265)
...+++++|+..|++..+. ..+..+..+|.++.. ++++++|...++++++. +++...+++.++.. .|+.
T Consensus 161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCS
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCH
Confidence 1148899999999999877 356788899999999 99999999999999998 88899999999988 6666
Q ss_pred Ccc
Q psy3174 214 NEM 216 (265)
Q Consensus 214 ~ea 216 (265)
.++
T Consensus 239 ~~A 241 (273)
T 1ouv_A 239 KQA 241 (273)
T ss_dssp TTH
T ss_pred HHH
Confidence 554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-10 Score=85.88 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.+.+...+.++...|+++.|.+.|+++++.+|+++......+.+.+.. +++++|...|+++....|.++..+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 567899999999999999999999999999999999886666666665555 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
|.++..+|++++|...++++++.+|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999988554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-10 Score=84.79 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC-------H
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST-------P 166 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t-------~ 166 (265)
+..+....++.++...|+++.|.+.++++++.+|++.......+.+.... +++++|...|+++....|.+ +
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--GDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 34677888999999999999999999999999999887666666665545 78999999999999887765 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk 212 (265)
.++..+|.++..+|++++|...++++++. +|++...+..+...+++
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999987 77788888877776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=84.35 Aligned_cols=115 Identities=12% Similarity=-0.036 Sum_probs=97.5
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH---TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
..+.+.+.+...+.++...|+++.|.+.|+++++.+|++ .......+.+.... +++++|...|+++....|.++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL--EDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTSCCHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCccCHH
Confidence 347889999999999999999999999999999999987 43333334443333 7899999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTA 207 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~ 207 (265)
.+..+|.++..+|++++|...++++++. ++++..++..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999987 566666665554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-10 Score=86.94 Aligned_cols=100 Identities=11% Similarity=-0.051 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
+..+..+.+++..|+++.|.+.++++++.+|++.......+.+.... |++++|...|+++....|+.+..+..+|.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44677888999999999999999999999999986666666655544 7899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhcCCHH
Q psy3174 177 IAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~~pd 198 (265)
..+|++++|...++++++.+|+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999998775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.2e-10 Score=97.48 Aligned_cols=123 Identities=19% Similarity=0.144 Sum_probs=105.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.+....++.+|+.+||+++|.+.++++.+.+|+.....+..+.. +. ..++..+|...|+++....|+++.++.
T Consensus 146 ~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~-l~-~~~~~~~a~~~l~~al~~~P~~~~~~~ 223 (287)
T 3qou_A 146 LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE-LL-XQAADTPEIQQLQQQVAENPEDAALAT 223 (287)
T ss_dssp HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH-HH-HHHTSCHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH-HH-hhcccCccHHHHHHHHhcCCccHHHHH
Confidence 3477899999999999999999999999999999999776544443333 22 235688899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDS-----EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~-----pdtl~nl~~~~~~~Gk~~e 215 (265)
.+|.+++++|++++|...+.+++..+ ++...+++.++..+|+..+
T Consensus 224 ~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 224 QLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999973 5578999999999998764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.15 E-value=8.1e-10 Score=93.46 Aligned_cols=155 Identities=10% Similarity=0.084 Sum_probs=116.3
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.+...+.++..|+++.++.. +..+... .+ ..+...+..+.++.+|..+|+++.|.+.|+++++.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~--------~~~~~~~--~p------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQ--------LEALDNR--YP------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHH--------HHHHHHH--CT------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH--------HHHHHHh--CC------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34456788999999877662 2222110 01 11234578999999999999999999999999999
Q ss_pred CCCcHH-----HHHHHHHHHHH--------------hccccHHHHHHHHHHHHhhcCCCHHHH-----------------
Q psy3174 126 DEDHTL-----TQLCSAWVHIA--------------NNVDKLNEAFYTLQDLIDKYGSTPMLV----------------- 169 (265)
Q Consensus 126 ~~d~~l-----~~la~a~v~l~--------------~g~~~~~eA~~~~~el~~~~p~t~~lL----------------- 169 (265)
.|++.. ..++.++..+. ...+++++|...|+++...+|+++...
T Consensus 71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 998854 33343333211 124789999999999999999876443
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCC---H---HHHHHHHHHHHHcCCCCcc
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDS---E---DTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~---p---dtl~nl~~~~~~~Gk~~ea 216 (265)
..+|.+++.+|+|++|...++++++.+ | +++.+++.++..+|+..++
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 467889999999999999999999873 3 5789999999999987653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=93.17 Aligned_cols=109 Identities=12% Similarity=0.009 Sum_probs=94.4
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 116 LKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 116 ek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+.|+++++++|+++-.....+.+.+.. |++++|...|+++....|.++..++++|.|+..+|+|++|...+++++..
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQS--GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4568889999998886666666665545 78999999999999999999999999999999999999999999999987
Q ss_pred ---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 196 ---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 196 ---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+|+++.+++.++..+|+..++. |++|.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 7779999999999999988765 887766444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-09 Score=82.48 Aligned_cols=113 Identities=12% Similarity=-0.057 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVN 170 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn 170 (265)
+.++..+.++...|+++.|.+.|+++++.+|++. -.....+.+.... |++++|...|+++...+|++ +..+.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT--RNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 4567789999999999999999999999988877 3444444444444 78999999999999999988 78899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLG 211 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~G 211 (265)
.+|.+++.+|++++|...++++++.+|+ +......+....+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999988444 4444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.3e-10 Score=87.08 Aligned_cols=118 Identities=9% Similarity=-0.039 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
...+.+...+.++...|+++.|.+.|+++++.+|++..+....+.+.... +++++|...|+++....|.++..+..+|
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34677888999999999999999999999999999876666666665544 7899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHH--HHHcCCC
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVT--AGRLGKG 213 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~--~~~~Gk~ 213 (265)
.++..+|++++|...+.++++. ++++..++..+ ....|+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 56666555544 4444543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=113.12 Aligned_cols=148 Identities=9% Similarity=0.033 Sum_probs=126.1
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.+....++.+|..+|++++|.+.|+++++.+|++.......+.+.+.. |++++|...|+++....|+.+..++
T Consensus 428 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~ 505 (681)
T 2pzi_A 428 DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT--GDYDSATKHFTEVLDTFPGELAPKL 505 (681)
T ss_dssp CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 34889999999999999999999999999999999999986665555555545 7899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHHHH--------
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSDET-------- 229 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~~-------- 229 (265)
++|.++.++|+|++ ...++++++. +++.+.|++.++..+|+.+++. |+++.+......
T Consensus 506 ~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 506 ALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999999 9999999987 6678999999999999987764 777655433221
Q ss_pred ----HHHHHHHHhhcc
Q psy3174 230 ----TATLDACGLQSN 241 (265)
Q Consensus 230 ----~~~FD~~~~~~~ 241 (265)
...|+++...+.
T Consensus 585 ~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 585 SEVTEEQIRDAARRVE 600 (681)
T ss_dssp --CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 366777777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-10 Score=82.07 Aligned_cols=103 Identities=12% Similarity=-0.064 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC--CHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--TPMLVN 170 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t~~lLn 170 (265)
|++.+....++.++..+|+++.|.+.++++++.+|++.......+.+.... +++++|...|+++....|. .+.++.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--ERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 567788888999999999999999999999999998876655555555444 7899999999999999999 999999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHhcCCH
Q psy3174 171 AQVAVLIAQ-DKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 171 ~~A~~~~~~-g~~eEAe~~l~~al~~~p 197 (265)
.+|.++..+ |++++|...+.+++..+|
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999999 999999999999998744
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.8e-10 Score=100.17 Aligned_cols=122 Identities=8% Similarity=-0.134 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---HH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC--
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH---TL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST-- 165 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t-- 165 (265)
....+...++.+|..+|+++.|.+.+++++++.++. .. +....+.+.. ..|++++|...|++.....|..
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI--FLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHhCcC
Confidence 344567777888888888888888888887753321 10 1222222222 2377888888888877655533
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C----HHHHHHHHHHHHHcCCCCccC
Q psy3174 166 ----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----S----EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 166 ----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~----pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
...++.+|.++..+|++++|...++++++. + +.++.+++.++..+|+..++.
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 557788888888888888888888888876 1 446778888888888876654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=89.01 Aligned_cols=108 Identities=14% Similarity=-0.005 Sum_probs=90.7
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-
Q psy3174 117 KELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD- 195 (265)
Q Consensus 117 k~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~- 195 (265)
..|+++++++|++.-.....+...+.. |++++|...|+++....|.++..+..+|.|+..+|++++|...+++++..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA--GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 567788888888876666666665545 78999999999999999999999999999999999999999999999988
Q ss_pred --CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 196 --SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 196 --~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+|+++.+++.++..+|+..++. |++|.....
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 7779999999999999988764 887765554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.9e-10 Score=101.47 Aligned_cols=121 Identities=13% Similarity=0.044 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH---------------TLTQLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---------------~l~~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
+...+.+..++.+|..+|+++.|.+.|+++++++|++ ..+....+.+.+.. +++++|...|++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~~~~ 221 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL--QAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 5677889999999999999999999999999999887 33333334443334 789999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
+....|..+..++.+|.+++.+|++++|...++++++. +++++.+++.++..+|+..+
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 67789999999999997543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=104.49 Aligned_cols=124 Identities=12% Similarity=-0.071 Sum_probs=107.6
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.+....++.++..+|++++|.+.|+++++.+|++.-+....+.+.... |++++|...|+++.+..|.++..++
T Consensus 18 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~ 95 (568)
T 2vsy_A 18 HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ--QRHAEAAVLLQQASDAAPEHPGIAL 95 (568)
T ss_dssp ---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34778899999999999999999999999999999999887666666665555 7899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc---CCCCcc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL---GKGNEM 216 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~---Gk~~ea 216 (265)
.+|.++..+|++++|...++++++. +++++.+++.++..+ |+.+++
T Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 9999999999999999999999987 677899999999999 665544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-10 Score=97.32 Aligned_cols=199 Identities=10% Similarity=-0.065 Sum_probs=104.0
Q ss_pred HHhhhhccHHHHHHHHhh---cccCChhhhhhHHHHHHHHHHcccChhHHhhhc----------C-ChH-HHHHHHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQR---LKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK----------L-PEE-LSCIKVLAEY 80 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~---~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei----------~-~~~-l~~~~~~A~~ 80 (265)
+..+..|+|.+|+..+++ ..+.++.........+.++|..+|+++.++.-+ . ++. ..+...++..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 555666777776666432 234566555555666666666666665444332 1 111 2233444444
Q ss_pred hcCCCcCcc---------------cccCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHcc
Q psy3174 81 LSIPSKNGS---------------SNFGTHLEINALKIHTYLTMYR--------------------NDLALKELKVMQDK 125 (265)
Q Consensus 81 l~~~~~~e~---------------~~~~~~lE~~al~v~~~l~~~r--------------------~d~Aek~l~~~~~~ 125 (265)
+...++.+. +..+....+...++.++..+|+ ++.|.+.+++++++
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 433333211 0111123355666667777777 66666666666553
Q ss_pred ----CCC--cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC---C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3174 126 ----DED--HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG---S---TPMLVNAQVAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 126 ----~~d--~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p---~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al 193 (265)
++. ...+....+++.+.. |++++|...|++.....+ + ....+..+|.++..+|++++|..++++++
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLL--GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 111222223333323 567777777766654433 1 12256666777777777777777777666
Q ss_pred cC---C------HHHHHHHHHHHHHcCCCCcc
Q psy3174 194 GD---S------EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 194 ~~---~------pdtl~nl~~~~~~~Gk~~ea 216 (265)
+. . +.++.+++.++..+|+..++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 54 1 33556666677777766554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=102.13 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=26.6
Q ss_pred HHhhhhccHHHHHHHHhh---cccCChhhhhhHHHHHHHHHHcccChhHHh
Q psy3174 16 RNSYYLGNYQQCIKEGQR---LKATDPKVLLEKDFYVCRSYLAQKKYKVVL 63 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~---~~~~~~~~~~e~~~~~~Raylalg~~~~~l 63 (265)
...+..|+|.+|+..+++ +.+.++.........+.++|..+|+++.++
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 106 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 555556666666665422 234555544445555666666666665443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-09 Score=94.85 Aligned_cols=184 Identities=13% Similarity=0.003 Sum_probs=127.6
Q ss_pred HHHhhhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
-...+..|+|.+|+..+++... .++.........+..+|..+|+++.++.-. -+.+..+-...
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~-------~~al~~~~~~~----- 177 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA-------RQAYEIYKEHE----- 177 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-------HHHHHHHHTCS-----
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHhCc-----
Confidence 3456678999999998654432 222224445556678899999998777621 11122221111
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC---CcHH---HHHHHHHHHHHhccccHHHHHHHHHHHHh---
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE---DHTL---TQLCSAWVHIANNVDKLNEAFYTLQDLID--- 160 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~---d~~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~--- 160 (265)
+..+....+...++.+|..+|+++.|.+.+++++++.+ +... +....|++.. ..|++++|...|++..+
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--SQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHH
Confidence 11234567888899999999999999999999988633 2211 1222233333 33889999999999987
Q ss_pred --hc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHH---HHHHHHHHHHcCC
Q psy3174 161 --KY-GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDT---LINNMVTAGRLGK 212 (265)
Q Consensus 161 --~~-p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdt---l~nl~~~~~~~Gk 212 (265)
.. |..+.+++.+|.++..+|++++|...++++++. +|.. +.+++.++...|+
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 44 556778999999999999999999999999987 5553 4567777777776
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=90.43 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-------cHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhh-----
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDED-------HTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDK----- 161 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-------~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~----- 161 (265)
+.+...+.++...||+++|.+.|+++++++|+ +..-..+.+|.|++ ..-|++++|...|++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 45667788999999999999999999999998 55434455677666 3348999999999999999
Q ss_pred --cCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 162 --YGSTPMLV----NAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 162 --~p~t~~lL----n~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.|+....+ +++|+++..+|+++||...++++++++|+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999 99999999999999999999999998655
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=9e-10 Score=98.39 Aligned_cols=202 Identities=10% Similarity=-0.084 Sum_probs=138.2
Q ss_pred HHHHhhhhccHHHHHHHHhhccc---CChhhhhhHHHHHHHHHHcccChhHHhhhc-----------CChH-HHHHHHHH
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKA---TDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----------LPEE-LSCIKVLA 78 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~---~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----------~~~~-l~~~~~~A 78 (265)
.-...+..|+|.+|+..+++... .++.........+.++|..+|+++.++.-+ .+|. ..+...++
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34677888999999999755443 333323344556678899999998665433 1222 33455566
Q ss_pred HHhcCCCcCcc---------------cccCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH
Q psy3174 79 EYLSIPSKNGS---------------SNFGTHLEINALKIHTYLTMYR--------------------NDLALKELKVMQ 123 (265)
Q Consensus 79 ~~l~~~~~~e~---------------~~~~~~lE~~al~v~~~l~~~r--------------------~d~Aek~l~~~~ 123 (265)
..+...++.+. +..+....+...++.+|..+|+ ++.|.+.+++++
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55554443322 1112235578888999999999 999999999887
Q ss_pred ccC---CCc---HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 124 DKD---EDH---TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST------PMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 124 ~~~---~d~---~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t------~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
++. ++. ..+....+.+.... |++++|...|++.....|.. ...++.+|.++..+|++++|..++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLL--GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 741 122 11222223333333 78999999999987665422 23789999999999999999999999
Q ss_pred HhcC---C------HHHHHHHHHHHHHcCCCCccC
Q psy3174 192 TAGD---S------EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 192 al~~---~------pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+++. . +.++.+++.++..+|+..++.
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9976 2 457789999999999987764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.8e-10 Score=84.38 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=83.7
Q ss_pred HcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHH
Q psy3174 108 TMYRNDLALKELKVMQDK---DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEE 184 (265)
Q Consensus 108 ~~~r~d~Aek~l~~~~~~---~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eE 184 (265)
.+|++++|.+.|+++++. +|++..+....+.+.... |++++|...|+++.+.+|+++.++..+|.|++.+|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 478999999999999999 577666555556665545 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 185 AWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 185 Ae~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
|...++++++. +|++......+....+..+
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYADKLD 112 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999987 7777666555655555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=92.59 Aligned_cols=121 Identities=9% Similarity=-0.053 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.+.+..++.++..+|+++.|.+.++++++.+|++..+....+.+.... |++++|...|+++....|..+..+..+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 456777888888888888888888888888888888776655555555444 678888888888888888877888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea 216 (265)
|.+++.+|++++|...++++++.+|+ ...... +....|+..++
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A 163 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQA 163 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHH
Confidence 88888888888888888888876333 333222 33445555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.6e-10 Score=96.70 Aligned_cols=198 Identities=8% Similarity=-0.062 Sum_probs=134.9
Q ss_pred HHhhhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhc----------CChH--HHHHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEK----------LPEE--LSCIKVLA 78 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei----------~~~~--l~~~~~~A 78 (265)
...+..|+|.+|+..+++... .++.........+.++|..+|+++.++..+ ..+. ..+...++
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 130 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 556778999999998644321 223334455566678899999998665443 1121 22344455
Q ss_pred HHhcCCCc--------------------Ccc---------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3174 79 EYLSIPSK--------------------NGS---------------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQ 123 (265)
Q Consensus 79 ~~l~~~~~--------------------~e~---------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~ 123 (265)
..+...++ .+. +..+....+...++.++..+|+++.|.+.+++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44432222 110 1123445678888999999999999999999998
Q ss_pred ccCCCc---HH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 124 DKDEDH---TL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST------PMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 124 ~~~~d~---~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t------~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
+..+.. .. +....+++.. ..|++++|..+|++.....+.. ...+..+|.++..+|++++|...+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYI--FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 864321 11 1222233333 3378999999999988765533 56889999999999999999999999
Q ss_pred HhcCCHH---------HHHHHHHHHHHcCCCCc
Q psy3174 192 TAGDSED---------TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 192 al~~~pd---------tl~nl~~~~~~~Gk~~e 215 (265)
+++..+. ++.+++.++..+|+..+
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9999433 66789999999998654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=9.7e-10 Score=97.01 Aligned_cols=123 Identities=15% Similarity=0.014 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++.+....++..++..|+++.|+..|+++++.+|++.-.....+.+.+.. |++++|...|+++....|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~--g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIAL--NRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC--CCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 788899999999999999999999999999999999987766666665555 789999999999999999766677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+..+..+|+.++|...++++++. +++...+++.++..+|+.+++.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence 88899999999999999999988 6779999999999999998765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-09 Score=93.66 Aligned_cols=123 Identities=8% Similarity=-0.049 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-HHHHHHHHHHHHH---hcc-ccHHHHHHHHHHHHhhcCCC----
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH-TLTQLCSAWVHIA---NNV-DKLNEAFYTLQDLIDKYGST---- 165 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-~l~~la~a~v~l~---~g~-~~~~eA~~~~~el~~~~p~t---- 165 (265)
...++..++.+|..+|++++|...|++++++.++. -....+.+|.+++ ... |++++|...|++..+.+|..
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 34566667778888888888888888777754321 0001122222222 222 66888888888877666532
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---HH-------HHHHHHHHHHHcCCCCccC
Q psy3174 166 --PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS---ED-------TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 166 --~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~---pd-------tl~nl~~~~~~~Gk~~ea~ 217 (265)
...++.+|.++..+|+|++|..+++++++.+ +. ++.+++.|+..+|+..++.
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3457777888888888888888888887762 21 4567777777777766543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-09 Score=87.67 Aligned_cols=121 Identities=11% Similarity=-0.089 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH----------------HHHHHHHHHHHHhccccHHHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT----------------LTQLCSAWVHIANNVDKLNEAFYTLQ 156 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~----------------l~~la~a~v~l~~g~~~~~eA~~~~~ 156 (265)
+...+.+...+.++...|+++.|.+.|+++++..|++. .+....+.+.+ ..+++++|...|+
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN--KNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHH
Confidence 45667788899999999999999999999999877654 22222233333 3378999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 157 DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 157 el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
++....|..+..+..+|.+++.+|++++|...++++++. ++++..+++.+...+|+..+
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 67788899999988886543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-09 Score=89.43 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=115.3
Q ss_pred HHhhhhccHHHHHHHHhhccc-------CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA-------TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~-------~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e 88 (265)
...+..|+|.+|+..+++... .++.........+.++|..+|+++.++.-+ .+++...-....
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~~~~~~------ 120 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC----KRALEIREKVLG------ 120 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH----HHHHHHHHHHHC------
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHH----HHHHHHHHHHcC------
Confidence 556779999999988654432 122233444555678899999998776621 111111111110
Q ss_pred ccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 89 SSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK--------DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 89 ~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--------~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...+....+...++.+|..+|+++.|.+.+++++++ .++...+....+.+.... |++++|...|+++..
T Consensus 121 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 121 -KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ--GKYQDAETLYKEILT 197 (283)
T ss_dssp -TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 123556788889999999999999999999999887 343344444445554444 789999999999875
Q ss_pred h-------------------------------------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 161 K-------------------------------------------------YGSTPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 161 ~-------------------------------------------------~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
. +|..+..+..+|.++..+|++++|..++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 198 RAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 234455788899999999999999999999
Q ss_pred HhcC
Q psy3174 192 TAGD 195 (265)
Q Consensus 192 al~~ 195 (265)
+++.
T Consensus 278 al~~ 281 (283)
T 3edt_B 278 ASRN 281 (283)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-09 Score=85.43 Aligned_cols=103 Identities=8% Similarity=-0.036 Sum_probs=83.7
Q ss_pred HccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHH
Q psy3174 123 QDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDT 199 (265)
Q Consensus 123 ~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdt 199 (265)
..++|+......-.+...+ ..|++++|...|+++.+..|.++.++.++|.|++.+|++++|...+.++++. +++.
T Consensus 6 a~inP~~a~~~~~~G~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYF--KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHCHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 3456665433332333333 3388999999999999999999999999999999999999999999999998 6779
Q ss_pred HHHHHHHHHHcCCCCccC----------CCChhhhcHH
Q psy3174 200 LINNMVTAGRLGKGNEMS----------VSPPFLFRSD 227 (265)
Q Consensus 200 l~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~ 227 (265)
+.+++.++..+|+..++. |+++.+....
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 999999999999988765 8888766543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.4e-10 Score=102.30 Aligned_cols=200 Identities=8% Similarity=-0.018 Sum_probs=133.3
Q ss_pred HHhhhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhc-----------CChH-HHHHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----------LPEE-LSCIKVLA 78 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----------~~~~-l~~~~~~A 78 (265)
...+..|+|.+|+..+++... .++.........+..+|..+|+++.++..+ .++. ..+...++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 94 NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 556778999999998644322 222334455566678899999998665443 1222 22344455
Q ss_pred HHhcCCCc-----------------Ccc---------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 79 EYLSIPSK-----------------NGS---------------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 79 ~~l~~~~~-----------------~e~---------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
..+...++ .+. +..+........++.+|..+|++++|.+.+++++++.
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 44433333 111 1123445577888899999999999999999998865
Q ss_pred CCc---HH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 127 EDH---TL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST------PMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 127 ~d~---~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t------~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
++. .. +....+.+.+ ..|++++|...|+++....+.. ..++..+|.++..+|++++|..+++++++
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHI--FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHH--HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 10 1122222222 3478999999999987765532 55788899999999999999999999999
Q ss_pred C-----C----HHHHHHHHHHHHHcCCCCccC
Q psy3174 195 D-----S----EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 195 ~-----~----pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
. + +.++.+++.++..+|+..++.
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 9 1 337788999999999877655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=9.9e-10 Score=96.76 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|.+.+.+...+.++...|+++.|.+.|+++++.+|++.......+.+.+.. |++++|...|+++.+..|.++.+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 457788999999999999999999999999999999886665555555544 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
|.++..+|++++|...++++++.+|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999998554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-09 Score=100.75 Aligned_cols=155 Identities=10% Similarity=-0.049 Sum_probs=111.2
Q ss_pred hccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHH
Q psy3174 21 LGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINA 100 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~a 100 (265)
.|+|.+|+..+++....+|+. ......+.++|..+|+++.++.. +-..+. ..|++.+...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~-----------~~~al~--------~~p~~~~~~~ 61 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-FVAWLMLADAELGMGDTTAGEMA-----------VQRGLA--------LHPGHPEAVA 61 (568)
T ss_dssp -------------------CC-HHHHHHHHHHHHHHTCHHHHHHH-----------HHHHHT--------TSTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH-----------HHHHHH--------hCCCCHHHHH
Confidence 588999998876655555543 23345557889999999876652 111111 2356789999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc-
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ- 179 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~- 179 (265)
.++.+|..+|++++|.+.|+++++.+|++.......+.+.... |++++|...|+++.+..|.++..+..+|.++..+
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA--GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999986666666665545 7899999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHHhcCCH
Q psy3174 180 --DKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 180 --g~~eEAe~~l~~al~~~p 197 (265)
|++++|...++++++.+|
T Consensus 140 ~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHhcCC
Confidence 999999999999998743
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-09 Score=85.54 Aligned_cols=105 Identities=12% Similarity=-0.020 Sum_probs=92.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHH-HHHhccccH--HHHHHHHHHHHhhcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWV-HIANNVDKL--NEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v-~l~~g~~~~--~eA~~~~~el~~~~p~t~~l 168 (265)
.|++.+....++.+|..+|+++.|.+.|+++++.+|+++......+.+ .... +++ ++|...|+++....|.++..
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~--~~~~~~~A~~~~~~al~~~p~~~~~ 117 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA--SQHMTAQTRAMIDKALALDSNEITA 117 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhCCCcHHH
Confidence 477889999999999999999999999999999999887665555555 3333 677 99999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
+..+|.++..+|++++|...+.++++.+|+
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999998443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.9e-09 Score=92.32 Aligned_cols=164 Identities=7% Similarity=-0.057 Sum_probs=108.2
Q ss_pred hhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCC
Q psy3174 20 YLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGT 94 (265)
Q Consensus 20 y~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~ 94 (265)
..|+|.+|+..+++... .++........-+..+|..+|+++.++.-. -+++.+.- . .++...
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~----~~Al~l~~---~------~g~~~~ 115 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL----ENAIQIFT---H------RGQFRR 115 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHH---H------TTCHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH----HHHHHHHH---H------cCCHHH
Confidence 47888888877543321 222222333444567788888888766521 11121111 0 122233
Q ss_pred CHHHHHHHHHHHHHc-CChHHHHHHHHHHHccCCCc--H----HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 95 HLEINALKIHTYLTM-YRNDLALKELKVMQDKDEDH--T----LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 95 ~lE~~al~v~~~l~~-~r~d~Aek~l~~~~~~~~d~--~----l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
...++..++.+|..+ |+++.|.+.|++++++.|+. . -+....+.+.+ ..|++++|...|+++....|.++.
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA--LDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHhcCCc
Confidence 356777889999996 99999999999999986532 1 11122233322 348899999999999998885432
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 168 -------LVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 168 -------lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.++++|.|+..+|++++|...++++++.+|+
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6789999999999999999999999998665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-09 Score=83.68 Aligned_cols=106 Identities=8% Similarity=-0.049 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC-------HHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST-------PMLV 169 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t-------~~lL 169 (265)
...-.++.++...|++++|.+.|+++++++|+++.+....|.+.+.. |++++|...|++..+..|.. ..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE--KKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh--hhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34456788999999999999999999999999986655555554444 78999999999998776632 2478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNM 204 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~ 204 (265)
..+|.++..+|+|++|...++++++. +|+++..+-
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 89999999999999999999999986 788775543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-09 Score=78.11 Aligned_cols=103 Identities=13% Similarity=-0.019 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+++......++.++...|+++.|.+.++++.+.+|++.......+.+.... +++++|...|+++....|..+..+..+
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l 109 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNL 109 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 456788888999999999999999999999999998876655555554434 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
|.++..+|++++|...+.++++.+|
T Consensus 110 a~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 110 GNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccHHHHHHHHHHHHccCC
Confidence 9999999999999999999987654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-08 Score=91.93 Aligned_cols=155 Identities=8% Similarity=-0.003 Sum_probs=86.3
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK--- 125 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--- 125 (265)
+..+|..+|+++.+++-. -+++.+.-. .. .....+..+.....++.+|..+|++++|.+.+++++++
T Consensus 57 Lg~~~~~~G~~~eAl~~~----~kAl~~~~~---~~---~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECL----RKAEELIQQ---EH---ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHHHTTCHHHHHHHH----HHHHHHHHH---HS---GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HHHHHHHHh---cC---ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 467788899998777632 011111100 00 00223455566666666777777777777777666653
Q ss_pred -----CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcC--
Q psy3174 126 -----DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA---QDKYEEAWDLLQDTAGD-- 195 (265)
Q Consensus 126 -----~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~---~g~~eEAe~~l~~al~~-- 195 (265)
.++...+..-.+|..+..|++++++|...|+++.+..|+.+..+.+++.++.. .|++++|...++++++.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 12233333333444444455667777777777777777666666666666443 35556666666666665
Q ss_pred -CHHHHHHHHHHHHHcCCC
Q psy3174 196 -SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 196 -~pdtl~nl~~~~~~~Gk~ 213 (265)
++.+..+++.+...+++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREE 225 (472)
T ss_dssp SCHHHHHHHHHHHHHCC--
T ss_pred cchHHHHHHHHHHHHHHhh
Confidence 444556666555555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=7.2e-09 Score=85.31 Aligned_cols=115 Identities=12% Similarity=0.011 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
..+..+.++...|+++.|.+.|++++ ++ +..+....+++.... |++++|...|+++....|..+..++.+|.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTIL--KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 35677889999999999999999995 33 443333344444434 78999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhcC---CH----------------HHHHHHHHHHHHcCCCCccC
Q psy3174 178 AQDKYEEAWDLLQDTAGD---SE----------------DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~---~p----------------dtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+|++++|...++++++. ++ +++.+++.++..+|+..++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999996 33 78899999999999987754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.5e-09 Score=95.13 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=111.7
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
..+.+..+|+++.++.- ++........ .++.+...++...++.+|..+|+++.|.+.+++++++.+.
T Consensus 109 ~g~~~~~~g~~~~A~~~--------~~~al~~~~~-----~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKF--------FKKAESKLIF-----VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHTTCHHHHHHH--------HHHHHTTGGG-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHH--------HHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 55678888888876662 2211111111 1223345688899999999999999999999999986332
Q ss_pred cH--HHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--
Q psy3174 129 HT--LTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGS------TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-- 195 (265)
Q Consensus 129 ~~--l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~------t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-- 195 (265)
.. ....+.++.+++ ...|++++|...|+++.+..+. ...+++++|.++..+|++++|...++++++.
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 21 122233333333 2338899999999998766442 2247899999999999999999999999983
Q ss_pred ---C----HHHHHHHHHHHHHcCCCCccC
Q psy3174 196 ---S----EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 ---~----pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+ +.++.+++.++..+|+.+++.
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAH 284 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHH
Confidence 3 347889999999999987654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=87.19 Aligned_cols=119 Identities=7% Similarity=-0.013 Sum_probs=98.6
Q ss_pred HHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH-HHHcCCH--
Q psy3174 106 YLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV-LIAQDKY-- 182 (265)
Q Consensus 106 ~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~-~~~~g~~-- 182 (265)
+...|+++.|.+.++++++.+|++.......+.+.+.. +++++|...|+++....|.++..+..+|.+ +..+|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ--NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34578999999999999999999987766666666555 789999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 183 EEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 183 eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
++|...+.++++. ++.++.+++.++..+|+..++. |+++....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999999999987 6778999999999999987764 776654433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-08 Score=89.02 Aligned_cols=145 Identities=11% Similarity=0.044 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCCcCcc---------cccCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q psy3174 71 LSCIKVLAEYLSIPSKNGS---------SNFGTHLE-INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVH 140 (265)
Q Consensus 71 l~~~~~~A~~l~~~~~~e~---------~~~~~~lE-~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~ 140 (265)
..++..++.++...++.+. ...|++.+ .....+.++...|+++.|.+.|+++++.+|++.-..++.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4455566666654443222 23467776 7888899999999999999999999998888764444444332
Q ss_pred HHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHH----HHHHHHHHHHHcCCC
Q psy3174 141 IANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SED----TLINNMVTAGRLGKG 213 (265)
Q Consensus 141 l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pd----tl~nl~~~~~~~Gk~ 213 (265)
.. ..|++++|..+|++....+|.++.++...+..+..+|++++|..+++++++. +|+ +..+++.+....|+.
T Consensus 179 ~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HH-TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 21 1478999999999999999999999999999999999999999999999984 443 667778888888876
Q ss_pred Ccc
Q psy3174 214 NEM 216 (265)
Q Consensus 214 ~ea 216 (265)
.++
T Consensus 258 ~~a 260 (308)
T 2ond_A 258 ASI 260 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.4e-09 Score=82.00 Aligned_cols=115 Identities=13% Similarity=0.023 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcc------------------CCCcHHHHHHHHHHHHHhccccHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDK------------------DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQ 156 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~------------------~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~ 156 (265)
..+.+...+..+...|+++.|.+.|.++++. +|....+....+.+.+.. |++++|...++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--~~~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI--GDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4567778899999999999999999999997 444433333333333333 78999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH----HHHHHHHHHHHcC
Q psy3174 157 DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED----TLINNMVTAGRLG 211 (265)
Q Consensus 157 el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd----tl~nl~~~~~~~G 211 (265)
++....|..+..+..+|.++..+|+|++|...++++++.+|+ +...+..+...++
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998444 3334555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=82.99 Aligned_cols=162 Identities=9% Similarity=-0.018 Sum_probs=108.8
Q ss_pred hhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHH
Q psy3174 18 SYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLE 97 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE 97 (265)
.|..|+|.+|...++.+. .+|.........+..+|..+|+++.++.. +.......... +..+....
T Consensus 2 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~~~~-----~~~~~~~~ 67 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARAS--------FQALQQQAQKS-----GDHTAEHR 67 (203)
T ss_dssp -----CHHHHHHHHHHHH-TSTTTHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHTT-----CCHHHHHH
T ss_pred ccccccHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhCcHHHHHHH--------HHHHHHHHHHc-----CCcHHHHH
Confidence 477899999999432222 23433444556667889999999876662 22211211111 23345667
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHcc---CCCcH----HHHHHHHHHHHHhccccHHHHHHHHHHHHhhc---CCC--
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDK---DEDHT----LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY---GST-- 165 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~---~~d~~----l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~---p~t-- 165 (265)
+...++.+|..+|+++.|.+.+++++++ .+|++ .+....+++.... |++++|...|++..... ++.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF--GDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhccchHH
Confidence 8888999999999999999999999886 33322 2233344554444 78999999999987543 221
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 166 -PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 166 -~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
...+..+|.++..+|++++|...++++++.
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 235789999999999999999999999987
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=92.25 Aligned_cols=192 Identities=10% Similarity=0.016 Sum_probs=123.7
Q ss_pred hhhhccHHHHHHHHhhccc---------CChhhhhhHHHHHHHHHHcccChhHHhhhc----------------CChHHH
Q psy3174 18 SYYLGNYQQCIKEGQRLKA---------TDPKVLLEKDFYVCRSYLAQKKYKVVLEEK----------------LPEELS 72 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~---------~~~~~~~e~~~~~~Raylalg~~~~~l~ei----------------~~~~l~ 72 (265)
.+-.|+|++|++..++... ..+.. ...-.-++.+|..+|+++.++.-+ ..+...
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~-~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRS-LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 3557999999988644321 11111 111222466789999998654322 111122
Q ss_pred HHHHHHHHhcCCCcCcc---------cccCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHccCCCcHHHH--HHHHH
Q psy3174 73 CIKVLAEYLSIPSKNGS---------SNFGTHLEINALKIHTYL---TMYRNDLALKELKVMQDKDEDHTLTQ--LCSAW 138 (265)
Q Consensus 73 ~~~~~A~~l~~~~~~e~---------~~~~~~lE~~al~v~~~l---~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~ 138 (265)
.-..++......++.+. ...|++++....++.++. ..++.+.|.+.|+++++++|++..+. ++..+
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 22222221112222111 224888888777776644 46778889999999999999886543 33333
Q ss_pred HHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 139 v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
..+....+++++|...|+++....|..+..++.+|.++..+|++++|...+.++++. +++++.+++.++...
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 333344578999999999999999999999999999999999999999999999988 555788888877554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.7e-09 Score=89.70 Aligned_cols=163 Identities=18% Similarity=0.033 Sum_probs=117.9
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
.......+.++|..+|+++.++.- +........... ....+....+...++.+|..+|+++.|.+.+++
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~--------~~~a~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPL--------CKQALEDLEKTS---GHDHPDVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHHH---CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345556667889999999876662 111111111000 012345678889999999999999999999999
Q ss_pred HHccC-----CC---cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc--------CCCHHHHHHHHHHHHHcCCHHHH
Q psy3174 122 MQDKD-----ED---HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY--------GSTPMLVNAQVAVLIAQDKYEEA 185 (265)
Q Consensus 122 ~~~~~-----~d---~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~--------p~t~~lLn~~A~~~~~~g~~eEA 185 (265)
+++.. ++ ...+....+++.. ..|++++|...|+++.+.. |....+++.+|.++..+|++++|
T Consensus 95 al~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 95 ALAIREKTLGKDHPAVAATLNNLAVLYG--KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 98862 22 2323333344433 3488999999999988764 44566899999999999999999
Q ss_pred HHHHHHHhcC--------CHH---HHHHHHHHHHHcCCCCccC
Q psy3174 186 WDLLQDTAGD--------SED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 186 e~~l~~al~~--------~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
..+++++++. +|. ++.+++.++..+|+..++.
T Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999886 555 6789999999999987654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-08 Score=83.09 Aligned_cols=128 Identities=11% Similarity=0.073 Sum_probs=103.9
Q ss_pred HHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 47 FYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 47 ~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
......+..+|+++.++..+ -..+ ..+..+...++.+|..+|+++.|.+.|+++++.+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~-----------~~a~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 67 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAF-----------SAVQ-----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-----------HTSS-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHH-----------HHHc-----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34467778888888666521 1111 1256889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHH
Q psy3174 127 EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP----------------MLVNAQVAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 127 ~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~----------------~lLn~~A~~~~~~g~~eEAe~~l~ 190 (265)
|++.......+.+.... |++++|...|+++.+..|.+. ..+..+|.++..+|++++|...++
T Consensus 68 ~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQT--EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99886665556655544 789999999999999888655 899999999999999999999999
Q ss_pred HHhcCCHH
Q psy3174 191 DTAGDSED 198 (265)
Q Consensus 191 ~al~~~pd 198 (265)
++++.+|+
T Consensus 146 ~al~~~p~ 153 (213)
T 1hh8_A 146 LATSMKSE 153 (213)
T ss_dssp HHHTTCCS
T ss_pred HHHHcCcc
Confidence 99999553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.92 E-value=8e-09 Score=97.45 Aligned_cols=120 Identities=9% Similarity=-0.044 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH---------------TLTQLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---------------~l~~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
+...+.+..++.++...|+++.|.+.|+++++++|++ ..+.+..+++.+.. +++++|...|++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~~~~ 342 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL--REYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHH
Confidence 5667788899999999999999999999999998877 33333334443334 789999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS---EDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~---pdtl~nl~~~~~~~Gk~~ 214 (265)
+....|.++..+..+|.+++.+|+|++|...++++++++ +++..+++.+...+|+..
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999994 458889999998888643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.2e-08 Score=88.17 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=116.0
Q ss_pred HHhhhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCccc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSS 90 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~ 90 (265)
...|..|+|.+|+..+++... .++.........+..+|..+|+++.++.-+ -+.+..+-....
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~-------~~al~~~~~~~~----- 176 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI-------LQALDIYQNHPL----- 176 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-------HHHHHHHHTSTT-----
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH-------HHHHHHHHhCCC-----
Confidence 344678999999998644332 222234444555678899999998777621 111222211110
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC---CcH---HHHHHHHHHHHHhccccHHHHHHHHHHHHh----
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE---DHT---LTQLCSAWVHIANNVDKLNEAFYTLQDLID---- 160 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~---d~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~---- 160 (265)
..+....+...++.+|..+|+++.|.+.+++++++.+ +.. .+....|++.... |++++|...|++..+
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS--GDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHh
Confidence 1123567888899999999999999999999988532 221 1222234443334 789999999999988
Q ss_pred -hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 161 -KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 161 -~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..|..+..+..+|.++..+|++++|...++++++.
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777889999999999999999999999999986
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-09 Score=85.72 Aligned_cols=122 Identities=12% Similarity=0.056 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+...+.....+.+++..|+++.|...|+++++.+|++.......+.+.+.. |++++|...|+++....| ++......
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~--g~~~~A~~~~~~a~~~~p-~~~~~~~~ 79 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET--KQFELAQELLATIPLEYQ-DNSYKSLI 79 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT--TCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence 345567888899999999999999999999999999987777666666555 789999999999999999 77766666
Q ss_pred HHHH-HHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 173 VAVL-IAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~-~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+.+. ..+++..+|...++++++. +++++.+++.++..+|+.+++.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 128 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL 128 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 6553 3445666789999999987 6779999999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-08 Score=92.34 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=111.6
Q ss_pred HHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC
Q psy3174 48 YVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE 127 (265)
Q Consensus 48 ~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~ 127 (265)
+....+..+|+++.++.. +......... .++.+...++...++.+|..+|+++.|.+.+++++++.+
T Consensus 106 ~~g~~~~~~g~~~~A~~~--------~~~al~~~~~-----~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGY--------YREAEKELPF-----VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHTTCHHHHHHH--------HHHHHTTGGG-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHH--------HHHHHHHHhh-----CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 345567788888876652 2211111111 122345678889999999999999999999999998643
Q ss_pred CcH--HHHHHHHHHHHH---hccccHHHHHHHHHHHHhhc---CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--
Q psy3174 128 DHT--LTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKY---GS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-- 194 (265)
Q Consensus 128 d~~--l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~---p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~-- 194 (265)
... ....+.++.+++ ...|++++|...|+++.+.. ++ ...+++++|.++..+|++++|...++++++
T Consensus 173 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 173 NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 211 112333333333 23388999999999987643 22 344789999999999999999999999998
Q ss_pred ---C---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 195 ---D---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 195 ---~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
. .+.++.+++.++..+|+.+++.
T Consensus 253 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 281 (378)
T 3q15_A 253 REKVPDLLPKVLFGLSWTLCKAGQTQKAF 281 (378)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCChhHHHHHHHHHHHHHHCCCHHHHH
Confidence 4 4557889999999999987654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=79.16 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=71.2
Q ss_pred HHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH----------H
Q psy3174 133 QLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED----------T 199 (265)
Q Consensus 133 ~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd----------t 199 (265)
..|.+|-++. ...|++++|+..|+++.+..|.++.+++++|.|++.+|+|++|...+.++++++|+ +
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3444444443 23488999999999999999999999999999999999999999999999998443 5
Q ss_pred HHHHHHHHHHcCCCCccC
Q psy3174 200 LINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 200 l~nl~~~~~~~Gk~~ea~ 217 (265)
+.+++.++..+|+..+++
T Consensus 86 ~~~lg~~~~~~~~~~~A~ 103 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAV 103 (127)
T ss_dssp HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHH
Confidence 778999999999887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.5e-08 Score=84.04 Aligned_cols=115 Identities=8% Similarity=-0.134 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 93 GTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
+++.+....++.+|.. .++++.|.+.|+++.+.+.......++..+..-....+++++|...|++..+. ..+..
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 112 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEG 112 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccH
Confidence 4455555555555555 55666666666655555422222222222221000025555666666555544 24455
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 169 VNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 169 Ln~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
++.+|.++.. +|++++|...++++++. +++...+++.++..
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 5555556655 56666666666665555 55555555555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-08 Score=91.65 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHc----------------cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQD----------------KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~----------------~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
.+.+..++.++...|+++.|.+.|+++++ .++....+....+++.+.. +++++|...|+++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM--SDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHH
Confidence 34577788999999999999999999998 5555554444455554444 78999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 160 DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 160 ~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
+..|..+..+..+|.++..+|++++|...+++++++ ++++..++..+...+|+.
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 666888888888877754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-09 Score=101.24 Aligned_cols=86 Identities=10% Similarity=-0.015 Sum_probs=64.9
Q ss_pred cccHHHHHHHHHHHH--------hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHH---HHHHHH
Q psy3174 145 VDKLNEAFYTLQDLI--------DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDT---LINNMV 205 (265)
Q Consensus 145 ~~~~~eA~~~~~el~--------~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pdt---l~nl~~ 205 (265)
.|+|++|..+|++.. ..||++..++|++|.++..||+|+||+.+++++++. ||++ +.||+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 367788888888764 345556667888888888888888888888888775 7874 468888
Q ss_pred HHHHcCCCCccC---------------CCChhhhcHHHHH
Q psy3174 206 TAGRLGKGNEMS---------------VSPPFLFRSDETT 230 (265)
Q Consensus 206 ~~~~~Gk~~ea~---------------p~hp~~~~~~~~~ 230 (265)
++..+|+.++|. |+||.+.++..+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 888888877654 9999999876643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=97.52 Aligned_cols=106 Identities=9% Similarity=-0.075 Sum_probs=73.4
Q ss_pred HHHHcCChHHHHHHHHHHHc-----cCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHH--------hhcCCCHHH
Q psy3174 105 TYLTMYRNDLALKELKVMQD-----KDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLI--------DKYGSTPML 168 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~-----~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~--------~~~p~t~~l 168 (265)
.+..+|++++|+..++++++ ++++|+-+. .++.+|+ ..+|+|++|..++++.. ..||++...
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a--~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVL--RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 35578889999888888877 467775332 1122222 24478888888888864 456667778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHHH---HHHHHHHHHcCC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDTL---INNMVTAGRLGK 212 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~--------~pdtl---~nl~~~~~~~Gk 212 (265)
+|++|.+|..+|+|+||+.++++|+++ ||+|. .++..+...+|+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988888875 66643 355555554544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.82 E-value=7.3e-09 Score=98.45 Aligned_cols=114 Identities=9% Similarity=-0.029 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ 179 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~ 179 (265)
..++.++..+|++++|.+.|+++++.+|++..+....+.+.... +++++|...|+++.+.+|.++..++.+|.++..+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34456788899999999999999999999876555555554444 7899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcC---CHHHHHHHHHH--HHHcCCCCc
Q psy3174 180 DKYEEAWDLLQDTAGD---SEDTLINNMVT--AGRLGKGNE 215 (265)
Q Consensus 180 g~~eEAe~~l~~al~~---~pdtl~nl~~~--~~~~Gk~~e 215 (265)
|++++|...++++++. +++...+++.+ +..+|+..+
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~ 128 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 128 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 55678888887 666665544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-08 Score=92.26 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH-----------------HHHHHHHHHHHhccccHHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL-----------------TQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l-----------------~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
+...+.+...+.++...|+++.|.+.|+++++..|++.. +.+..+.+.+ ..+++++|...|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~--~~g~~~~A~~~~ 253 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI--KLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH--TTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHH
Confidence 446677888899999999999999999999999888652 2222222222 348899999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 156 QDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 156 ~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
+++....|.++..++.+|.+++.+|+|++|...+++++++ ++++..++..+.....
T Consensus 254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 5557777777755443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=97.79 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=75.6
Q ss_pred hccccHHHHHHHHHHHH--------hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHH---HHHH
Q psy3174 143 NNVDKLNEAFYTLQDLI--------DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDT---LINN 203 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~--------~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pdt---l~nl 203 (265)
..+|+|++|..+|++.. ..||++..++|++|.++..+|+|+||+.+++++++. ||+| +.||
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45689999999999975 456677889999999999999999999999999986 9995 5799
Q ss_pred HHHHHHcCCCCccC---------------CCChhhhcHHH
Q psy3174 204 MVTAGRLGKGNEMS---------------VSPPFLFRSDE 228 (265)
Q Consensus 204 ~~~~~~~Gk~~ea~---------------p~hp~~~~~~~ 228 (265)
+.++..+|+.++|. |+||.+.+...
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 439 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEA 439 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999999998764 99999998754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.5e-08 Score=77.19 Aligned_cols=95 Identities=7% Similarity=-0.047 Sum_probs=79.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS---- 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~---- 217 (265)
.+++++|...|+++....|.++.+++.+|.|++.+|+|++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 388999999999999999999999999999999999999999999999998 6779999999999999988765
Q ss_pred ------CCChhh---hcHHHHHHHHHHHHhh
Q psy3174 218 ------VSPPFL---FRSDETTATLDACGLQ 239 (265)
Q Consensus 218 ------p~hp~~---~~~~~~~~~FD~~~~~ 239 (265)
|+++.. ..+........+...+
T Consensus 104 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 134 (164)
T 3sz7_A 104 KGIEAEGNGGSDAMKRGLETTKRKIEEANRG 134 (164)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 888763 3334444444444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-07 Score=81.79 Aligned_cols=166 Identities=11% Similarity=0.039 Sum_probs=107.4
Q ss_pred HHHhhhhccHHHHHHHHhhcccC---ChhhhhhHHHH--HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKAT---DPKVLLEKDFY--VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~---~~~~~~e~~~~--~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
+...+..|+|++++..+++.... .++...-...+ +.-.|...|+++.++. .+..........
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~--------~~~~al~~~~~~----- 148 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL--------ELKKLLNQQLTG----- 148 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHH--------HHHHHHHTCCCC-----
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHH--------HHHHHHHHhccc-----
Confidence 67889999999999997665432 23321111122 2344566667776555 222211211110
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc----CCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK----DEDHT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~----~~d~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
.+....+.+...++.+|..+|+++.|...|+++++. ..+.. .+....+++.... |++++|..+|++..+..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~--~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD--SRYEESLYQVNKAIEIS 226 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH
Confidence 111233557888999999999999999999999852 12221 1122223333334 78999999999987654
Q ss_pred CC------CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcC
Q psy3174 163 GS------TPMLVNAQVAVLIAQD-KYEEAWDLLQDTAGD 195 (265)
Q Consensus 163 p~------t~~lLn~~A~~~~~~g-~~eEAe~~l~~al~~ 195 (265)
+. ...+++.+|.++..+| .+++|...+++|+..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 32 2568999999999999 579999999999874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.9e-08 Score=85.51 Aligned_cols=153 Identities=12% Similarity=0.014 Sum_probs=103.1
Q ss_pred HHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-
Q psy3174 50 CRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED- 128 (265)
Q Consensus 50 ~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d- 128 (265)
..+|..+|+++.++. .+...++..... ++......++..++.+|..+|++++|...|++++++.++
T Consensus 43 ~~~~~~~g~~~~A~~--------~~~~al~~~~~~-----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKD--------AYLQEAEAHANN-----RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHTTCHHHHHH--------HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHH--------HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 456777888887665 222222221111 122234556777788999999999999999998876321
Q ss_pred -cHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---
Q psy3174 129 -HTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGST------PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--- 195 (265)
Q Consensus 129 -~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t------~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--- 195 (265)
+. ...+.+|.+++ .. +++++|...|++..+.+|.. ..+++.+|.++..+|+|++|...++++++.
T Consensus 110 g~~-~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 110 GTP-DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp TCH-HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 12233333333 23 78999999999988776532 457889999999999999999999999886
Q ss_pred C------HHHHHHHHHHHHHcCCCCccC
Q psy3174 196 S------EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 ~------pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+ ..++.+++.++..+|+..++.
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 235678888888889876553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-08 Score=76.26 Aligned_cols=118 Identities=8% Similarity=-0.132 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC---cH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC-----
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDED---HT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS----- 164 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d---~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~----- 164 (265)
..+...++.++...|+++.|.+.++++++..+. .. .+....+++.... |++++|...|++.....+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL--GEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCcH
Confidence 456778899999999999999999999886432 11 1222334443334 7899999999998765442
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C----HHHHHHHHHHHHHcCCCCc
Q psy3174 165 -TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----S----EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 165 -t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~----pdtl~nl~~~~~~~Gk~~e 215 (265)
....+..+|.++..+|++++|...++++++. + +.++.+++.++..+|+..+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 147 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 147 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence 2457889999999999999999999999876 2 3367799999999998654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.9e-08 Score=80.55 Aligned_cols=121 Identities=11% Similarity=-0.069 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC------CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---cCC
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKD------EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK---YGS 164 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~------~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~---~p~ 164 (265)
....+...++.++..+|+++.|...+++++++. +....+....+++.... |++++|...|++..+. .|+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA--GNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCc
Confidence 567888999999999999999999999998842 22233333344444444 7899999999998765 553
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHH----HHHHHHHHHHHcCCCCcc
Q psy3174 165 T----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SED----TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 165 t----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pd----tl~nl~~~~~~~Gk~~ea 216 (265)
. ...++.+|.++..+|++++|...++++++. ++. ++.+++.++..+|+..++
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 3 346899999999999999999999999975 333 467999999999997654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=82.14 Aligned_cols=119 Identities=10% Similarity=0.065 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHhccccHHHHHHHHHHHH---hhcCCCH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDH------TLTQLCSAWVHIANNVDKLNEAFYTLQDLI---DKYGSTP 166 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~------~l~~la~a~v~l~~g~~~~~eA~~~~~el~---~~~p~t~ 166 (265)
+......+.++..+|+++.|.+.++++++..+.. ..+....+++.. ..|++++|..+|+++. +..|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA--ENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 3445567788899999999999999998764322 112222233333 3488999999999987 5666543
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--C-------HHHHHHHHHHHHHcCCCCcc
Q psy3174 167 ----MLVNAQVAVLIAQDKYEEAWDLLQDTAGD--S-------EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 167 ----~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~-------pdtl~nl~~~~~~~Gk~~ea 216 (265)
.+++++|.++..+|+|++|..+++++++. + +.++.|++.++..+|+.+++
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 58899999999999999999999999987 2 56789999999999998764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-07 Score=81.09 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=109.3
Q ss_pred HHHHhhhhccHHHHHHHHhhccc---CChhh--hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCc
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKA---TDPKV--LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~---~~~~~--~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e 88 (265)
.++..+..|+|+++++.+++... ..++. ......++...|..+|+++.++.. +-..+.....
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-----------~~~al~~~~~-- 147 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE-----------LKKLLNQQLT-- 147 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHH-----------HHHHHTTCCC--
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHH-----------HHHHHHHHhc--
Confidence 35677899999999988643322 22222 222233345667777888766552 1111211100
Q ss_pred ccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc---cCCCcH----HHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 89 SSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQD---KDEDHT----LTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 89 ~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~---~~~d~~----l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
.........+...++.+|..+|+++.|...|+++++ ..++.. .+....+++.. ..|++++|...|++....
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~--~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--LDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence 011122366888899999999999999999999984 344421 12222233333 338899999999998654
Q ss_pred cC---C---CHHHHHHHHHHHHHcCCHHHH-HHHHHHHhcC
Q psy3174 162 YG---S---TPMLVNAQVAVLIAQDKYEEA-WDLLQDTAGD 195 (265)
Q Consensus 162 ~p---~---t~~lLn~~A~~~~~~g~~eEA-e~~l~~al~~ 195 (265)
.+ + ...+++.+|.++..+|++++| ...+++|+..
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 32 1 256889999999999999999 8889999875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.9e-08 Score=73.74 Aligned_cols=74 Identities=9% Similarity=-0.001 Sum_probs=68.6
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
..|++++|...|+++....|.++.++.++|.|++.+|+|++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 92 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 92 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 3488999999999999999999999999999999999999999999999998 6779999999999999987654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.5e-08 Score=73.11 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=75.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---HHHHHHHHHHHHHcCCCCc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTP---MLVNAQVAVLIAQDKYEEAWDLLQDTAGD---S---EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~---~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~---pdtl~nl~~~~~~~Gk~~e 215 (265)
.|++++|...|+++...+|.++ ..+..+|.+++.+|+|++|...+.++++. + |+++.+++.++..+|+..+
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 3789999999999999999877 68899999999999999999999999987 5 7789999999999999877
Q ss_pred cC----------CCChhhhcHHHH
Q psy3174 216 MS----------VSPPFLFRSDET 229 (265)
Q Consensus 216 a~----------p~hp~~~~~~~~ 229 (265)
+. |+++.+......
T Consensus 95 A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 95 AQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChHHHHHHHH
Confidence 64 888887665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=9.3e-07 Score=65.55 Aligned_cols=120 Identities=7% Similarity=-0.107 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy3174 43 LEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVM 122 (265)
Q Consensus 43 ~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~ 122 (265)
........+.+...|+++.++.. +..... ..|++......++.++..+|+++.|.+.+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHF--------YGKAIE-----------LNPANAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHH--------HHHHHH-----------cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 33445556778888888866652 111111 13456889999999999999999999999999
Q ss_pred HccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 123 QDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 123 ~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
++.+|++.......+++.... +++++|...|+++....|.++..+..++.++..+|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 73 ICIDPAYSKAYGRMGLALSSL--NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCccCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999887766666666555 78999999999999999999999999999999999864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.8e-07 Score=82.57 Aligned_cols=124 Identities=3% Similarity=-0.029 Sum_probs=102.0
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL-TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l-~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.|++.++....+.++...|+++.|.+.|+++++.+|++.- ..+..+.+ ....|++++|..+|+++.+..|.+..++.
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 172 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF--ARRAEGIKSGRMIFKKAREDARTRHHVYV 172 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH--HHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHH--HHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5788999999999999999999999999999999998752 22222222 23447899999999999999898877777
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 171 AQVAVLIA-QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 171 ~~A~~~~~-~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+.|.+... +|++++|..+++++++. +|+++.+++.+...+|+..++.
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 66666443 79999999999999988 7789999999999999887653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-07 Score=69.96 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=80.6
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3174 114 LALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 114 ~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al 193 (265)
.|...|+++++.+|++.......+.+.... |++++|...|+++....|..+..+..+|.++..+|++++|...+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477889999999999987766666665555 789999999999999999999999999999999999999999999999
Q ss_pred cC-----CHHHHHHHHHHHHHcCC
Q psy3174 194 GD-----SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 194 ~~-----~pdtl~nl~~~~~~~Gk 212 (265)
+. ++..+..+......+|+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhcc
Confidence 87 33455566555555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-07 Score=72.15 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=100.1
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.....+.+...|+++.++.. +..... ..|++.++...++.++..+|+++.|.+.++++++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~--------~~~al~-----------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKF--------YSQAIE-----------LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHH--------HHHHHH-----------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44446778888888766652 111111 23556899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA--QVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~--~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
+|++..+....+.+.... |++++|...|+++....|.++..+.. .+..+..+|++++|...+.++.+
T Consensus 77 ~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 77 DKKYIKGYYRRAASNMAL--GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999886666666665545 78999999999999999988877644 44458899999999999988765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-08 Score=93.96 Aligned_cols=89 Identities=8% Similarity=-0.056 Sum_probs=72.9
Q ss_pred HcCChHHHHHHHHHHHc-----cCCCcHHH-----HHHHHHHHHHhccccHHHHHHHHHHHH--------hhcCCCHHHH
Q psy3174 108 TMYRNDLALKELKVMQD-----KDEDHTLT-----QLCSAWVHIANNVDKLNEAFYTLQDLI--------DKYGSTPMLV 169 (265)
Q Consensus 108 ~~~r~d~Aek~l~~~~~-----~~~d~~l~-----~la~a~v~l~~g~~~~~eA~~~~~el~--------~~~p~t~~lL 169 (265)
..|++++|+..++++++ ++++|+.+ +|+.+| ..+|+|++|..+|++.. ..||++...+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y----~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC----LYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHH----HhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 46889999999999988 47887644 233333 24589999999999975 4566778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDTL 200 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~--------~pdtl 200 (265)
|++|.+|..||+|+||+.++++|+++ ||.|.
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999999986 88865
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-06 Score=80.83 Aligned_cols=199 Identities=8% Similarity=-0.016 Sum_probs=91.4
Q ss_pred cCCcchhHHHHHhhhh-----ccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHc----ccChhHHhhhc----CChHHH
Q psy3174 6 DNEVDELFDVRNSYYL-----GNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLA----QKKYKVVLEEK----LPEELS 72 (265)
Q Consensus 6 ~~~~delf~vr~~fy~-----G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Rayla----lg~~~~~l~ei----~~~~l~ 72 (265)
.++++.++.+-..|+. |+|.+|+..+++...... .+..+.+.+.|.. .++++.++.-. ......
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 112 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQ 112 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 3456667777666664 788888888754433211 2235555666766 66666544333 111122
Q ss_pred HHHHHHHHhcC----CCcCcc-------cccCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCCcHHHHHHHH
Q psy3174 73 CIKVLAEYLSI----PSKNGS-------SNFGTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDEDHTLTQLCSA 137 (265)
Q Consensus 73 ~~~~~A~~l~~----~~~~e~-------~~~~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d~~l~~la~a 137 (265)
+...++..+.. +++.+. .-..++++....++.+|.. .++++.|.+.|+++.+.++......|+..
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 32333333322 111111 0013445555555555555 45555555555555544322222222222
Q ss_pred HHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 138 WVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 138 ~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
+..-....+++++|+..|++..+. .++..++.+|.++.. .+++++|..+++++++. +++...+++.++..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Confidence 111000024455555555554443 123344444444444 44455555555554444 44444444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=77.78 Aligned_cols=84 Identities=8% Similarity=-0.021 Sum_probs=72.0
Q ss_pred cccHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC-
Q psy3174 145 VDKLNEAFYTLQDLIDK---YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS- 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~---~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~- 217 (265)
.|++++|...|+++... .|.++..+.++|.++..+|+|++|...++++++. +|+++.+++.++..+|+..++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 37899999999999998 5778889999999999999999999999999998 7779999999999999988765
Q ss_pred ---------CCChhhhcHHH
Q psy3174 218 ---------VSPPFLFRSDE 228 (265)
Q Consensus 218 ---------p~hp~~~~~~~ 228 (265)
|++|.+..+..
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHhCCCcHHHHHHHH
Confidence 88887765544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=68.09 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=73.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS---- 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~---- 217 (265)
.+++++|...|+++....|.++..+..+|.++..+|++++|...+.++++. ++.++.+++.++..+|+..++.
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999987 6778999999999999987654
Q ss_pred ------CCChhhhcH
Q psy3174 218 ------VSPPFLFRS 226 (265)
Q Consensus 218 ------p~hp~~~~~ 226 (265)
|+++.+...
T Consensus 97 ~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 97 EGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHTTCTTCHHHHHH
T ss_pred HHHHcCCCCHHHHHH
Confidence 777655443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-06 Score=81.72 Aligned_cols=120 Identities=8% Similarity=-0.049 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhhcCCCH
Q psy3174 93 GTHLEINALKIHTYLTM-----YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN-VDKLNEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~-----~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g-~~~~~eA~~~~~el~~~~p~t~ 166 (265)
.++.++.+.++.+|... +++++|.+.|+++.+.++......++..+. ..| ..++++|+..|++..+. .++
T Consensus 288 ~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~--~~g~~~~~~~A~~~~~~a~~~--~~~ 363 (490)
T 2xm6_A 288 QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYF--RLGSEEEHKKAVEWFRKAAAK--GEK 363 (490)
T ss_dssp TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHT--TCH
T ss_pred cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hCCCcccHHHHHHHHHHHHHC--CCH
Confidence 46778888888888887 889999999999888766555444444333 222 24789999999998876 467
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH----cCCCCcc
Q psy3174 167 MLVNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR----LGKGNEM 216 (265)
Q Consensus 167 ~lLn~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~----~Gk~~ea 216 (265)
..++.+|.++.. .+++++|...++++.+. +|+...+++.++.. .|+..++
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 888999999999 89999999999999988 99999999998887 5554444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=70.80 Aligned_cols=90 Identities=9% Similarity=-0.093 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
++.+.......+.+.+.. +++++|...|+++....|.++..+..+|.|++.+|+|++|...++++++. ++.++.+
T Consensus 5 ~~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp -CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 344444444444444444 78999999999999999999999999999999999999999999999987 6778999
Q ss_pred HHHHHHHcCCCCccC
Q psy3174 203 NMVTAGRLGKGNEMS 217 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~ 217 (265)
++.++..+|+..++.
T Consensus 83 l~~~~~~~~~~~~A~ 97 (137)
T 3q49_B 83 LGQCQLEMESYDEAI 97 (137)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhhHHHHH
Confidence 999999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-07 Score=81.78 Aligned_cols=162 Identities=10% Similarity=-0.077 Sum_probs=102.9
Q ss_pred hhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccC
Q psy3174 19 YYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFG 93 (265)
Q Consensus 19 fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~ 93 (265)
...|+|.+|+..+.+... .++........-+..+|..+|+++.++. .+.......... ++..
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~--------~~~~Al~l~~~~-----g~~~ 113 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ--------YIEKASVMYVEN-----GTPD 113 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH--------HHHHHHHHHHTT-----TCHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH--------HHHHHHHHHHHc-----CCHH
Confidence 345777777766433221 1222222233333566777777776555 222211211111 2222
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC--
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH------TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST-- 165 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~------~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t-- 165 (265)
....++..++.+|.. |+++.|...|++++++.++. ..+....+.+.. ..|++++|...|+++...+|.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV--RQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCC
Confidence 345677788899999 99999999999999875432 111222233322 3488999999999998876532
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 166 ----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 166 ----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
...+.+++.|++.+|++++|...+++++ .+|
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 2378889999999999999999999999 855
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-07 Score=66.75 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=62.9
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C------HHHHHHHHHHHHHcCCCC
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---S------EDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~------pdtl~nl~~~~~~~Gk~~ 214 (265)
..|++++|...|+++....|.++.++.++|.|++.+|++++|...++++++. + +.++.+++.+...+|+..
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ 95 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3478889999999988888888888999999999999999999999999988 4 556788899999888876
Q ss_pred ccC
Q psy3174 215 EMS 217 (265)
Q Consensus 215 ea~ 217 (265)
++.
T Consensus 96 ~a~ 98 (111)
T 2l6j_A 96 IPV 98 (111)
T ss_dssp CCS
T ss_pred hhH
Confidence 654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-08 Score=92.62 Aligned_cols=85 Identities=11% Similarity=-0.108 Sum_probs=52.7
Q ss_pred cccHHHHHHHHHHHHh--------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHH---HHHHHH
Q psy3174 145 VDKLNEAFYTLQDLID--------KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDT---LINNMV 205 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~--------~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pdt---l~nl~~ 205 (265)
++++++|..+++++.. .||++..+++++|.++..+|+|+||+.+++++++. ||++ +.||+.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 3566666666666542 33344556666666666666666666666666654 6663 346666
Q ss_pred HHHHcCCCCccC---------------CCChhhhcHHHH
Q psy3174 206 TAGRLGKGNEMS---------------VSPPFLFRSDET 229 (265)
Q Consensus 206 ~~~~~Gk~~ea~---------------p~hp~~~~~~~~ 229 (265)
++..+|+.+++. |+||.+++...+
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 666666665543 899999887543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=7.2e-08 Score=74.14 Aligned_cols=72 Identities=13% Similarity=-0.050 Sum_probs=67.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
.|++++|...|+++....|+++..+..+|.++..+|++++|...++++++. +++++.+++.++..+|+..++
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 378999999999999999999999999999999999999999999999998 677999999999999987654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=8.7e-07 Score=77.45 Aligned_cols=151 Identities=13% Similarity=0.038 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHHHhcCCCcCcc-ccc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH-H
Q psy3174 67 LPEELSCIKVLAEYLSIPSKNGS-SNF---GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVH-I 141 (265)
Q Consensus 67 ~~~~l~~~~~~A~~l~~~~~~e~-~~~---~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~-l 141 (265)
..|.+..+..+++.+..+-..-- +.. .+..+.+...+..++..|+++.|.+.++++++..+..........|.. +
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l 121 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYV 121 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence 56777788888888775433110 111 223344445578899999999999999999997766554332121221 2
Q ss_pred H---hccccHHHHHHHHHHHHhhcC---CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----------CHHHHHH
Q psy3174 142 A---NNVDKLNEAFYTLQDLIDKYG---ST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----------SEDTLIN 202 (265)
Q Consensus 142 ~---~g~~~~~eA~~~~~el~~~~p---~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----------~pdtl~n 202 (265)
+ .+.+++++|...|+++....+ +. ..+++++|.++..+|+|++|..+++++++. .+.++.|
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n 201 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 2 445789999999999987543 22 337999999999999999999999999952 2337789
Q ss_pred HHHHHHHcCCCCccC
Q psy3174 203 NMVTAGRLGKGNEMS 217 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~ 217 (265)
++.++..+|+..++.
T Consensus 202 lg~~y~~~~~y~~A~ 216 (293)
T 3u3w_A 202 HAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhHHHHHH
Confidence 999999999988765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.8e-06 Score=62.34 Aligned_cols=116 Identities=13% Similarity=-0.001 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3174 44 EKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQ 123 (265)
Q Consensus 44 e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~ 123 (265)
.....+.+++...|+++.++.. +..... ..|++.+....++.++...|+++.|.+.++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEY--------YQKALE-----------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHH-----------HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3345557788888888866652 111111 124567889999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q psy3174 124 DKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD 180 (265)
Q Consensus 124 ~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g 180 (265)
+.+|+++.+....+.+.... +++++|...|+++.+..|.++..+..++.++.++|
T Consensus 71 ~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 71 ELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99998876655555555444 78999999999999999999999999999988775
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-07 Score=75.79 Aligned_cols=96 Identities=9% Similarity=-0.087 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
..+...++.+|..+|+++.|.+.+.++++.+|++.-+....+.+.... +++++|...|+++....|.++.++..++.|
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF--GFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 378889999999999999999999999999999886666666665545 789999999999999999999999999999
Q ss_pred HHHcCCHHHHH-HHHHHHh
Q psy3174 176 LIAQDKYEEAW-DLLQDTA 193 (265)
Q Consensus 176 ~~~~g~~eEAe-~~l~~al 193 (265)
+..+|+..++. ..+...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 99999999988 3344333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=71.20 Aligned_cols=99 Identities=8% Similarity=0.046 Sum_probs=81.6
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDT 199 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdt 199 (265)
+++........+...+.. +++++|...|+++....|++ ..++..+|.+++.+|+|++|...+.++++. ++++
T Consensus 24 ~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKC--GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred chHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 455555555555554444 78999999999999999986 789999999999999999999999999987 7789
Q ss_pred HHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 200 LINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 200 l~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+.+++.++..+|+..++. |+++.+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 999999999999987654 777765543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5.1e-07 Score=63.80 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
+++++|...|+++....|.++..+..+|.+++.+|++++|...++++++. +++++.+++.++..+|
T Consensus 23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 45666666666666656666666666666666666666666666666655 4455566666655543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-07 Score=68.54 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTL 200 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl 200 (265)
+|++.-.....+.+.. ..+++++|...|+++....|.++..+..+|.++..+|++++|...++++++. +++++
T Consensus 2 ~p~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQY--DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHH--SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence 3444333333334433 3488999999999999999999999999999999999999999999999987 36688
Q ss_pred HHHHHHHHHc-CCCCccC
Q psy3174 201 INNMVTAGRL-GKGNEMS 217 (265)
Q Consensus 201 ~nl~~~~~~~-Gk~~ea~ 217 (265)
.+++.++..+ |+..++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~ 97 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAE 97 (112)
T ss_dssp HHHHHHHTTCSSCSHHHH
T ss_pred HHHHHHHHHHhCCHHHHH
Confidence 8999999999 9876543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.5e-07 Score=85.41 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=81.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHcc-----CCCcHHH-----HHHHHHHHHHhccccHHHHHHHHHHHH--------hhc
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDK-----DEDHTLT-----QLCSAWVHIANNVDKLNEAFYTLQDLI--------DKY 162 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~-----~~d~~l~-----~la~a~v~l~~g~~~~~eA~~~~~el~--------~~~ 162 (265)
..+.-+..+|++++|++.+++++++ +++|+.+ +|+.++. .+|+|++|..+++++. ..|
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~----~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI----NLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH----hhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 3345566789999999999999874 6777543 3333333 3488999999999975 356
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHHH---HHHHHHHHH
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDTL---INNMVTAGR 209 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pdtl---~nl~~~~~~ 209 (265)
|++...+|++|.++..+|+|+||+.++++|+++ ||.|. .||..+...
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 667778999999999999999999999999986 88854 566665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-07 Score=68.11 Aligned_cols=93 Identities=9% Similarity=-0.081 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC------HHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST------PML 168 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t------~~l 168 (265)
+.+....++.++...|+++.|.+.|+++++.+|++.......+.+.+.. |++++|...|+++....|++ ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL--GEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 5678889999999999999999999999999999886655555555444 78999999999999999987 888
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLL 189 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l 189 (265)
+..+|.++..+|++++|...+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 999999999999998876544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-07 Score=62.85 Aligned_cols=86 Identities=12% Similarity=-0.035 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.+....++.++..+|+++.|.+.++++++.+|++.......+.+.... +++++|...|+++.+..|.++..+..+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345678889999999999999999999999999999886666666665545 789999999999999999999999999
Q ss_pred HHHHHHcC
Q psy3174 173 VAVLIAQD 180 (265)
Q Consensus 173 A~~~~~~g 180 (265)
|.++..+|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99998775
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.6e-07 Score=66.13 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=94.6
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
.......+..++...|+++.++.. +. ..+ ...|++.+....++.++..+|+++.|.+.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~--------~~---~al--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKH--------YT---EAI--------KRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHH--------HH---HHH--------TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHH--------HH---HHH--------HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455567778888888766552 11 111 12356789999999999999999999999999
Q ss_pred HHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q psy3174 122 MQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDK 181 (265)
Q Consensus 122 ~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~ 181 (265)
+++.+|++.......+.+.... +++++|...|+++....|.+...+..++.+++.+|+
T Consensus 76 a~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 76 CIQLEPTFIKGYTRKAAALEAM--KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhCCCchHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999887666666665555 789999999999999999888899999999998885
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-06 Score=75.74 Aligned_cols=200 Identities=13% Similarity=-0.024 Sum_probs=113.7
Q ss_pred HHhhhhccHHHHHHHHhhcccCChh----hhhhHHHHHHHHHHcccChhHHhhhc----------CChH--HHHHHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPK----VLLEKDFYVCRSYLAQKKYKVVLEEK----------LPEE--LSCIKVLAE 79 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~----~~~e~~~~~~Raylalg~~~~~l~ei----------~~~~--l~~~~~~A~ 79 (265)
.-.+..|+|.+++..+++.....|. ........+..++..+|+++.++..+ ..+. ..+...++.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4566788998888886443221121 12223334456677788887554433 1111 112233444
Q ss_pred HhcCCCcCcc---------------cc--cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-----HHHHHHHH
Q psy3174 80 YLSIPSKNGS---------------SN--FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH-----TLTQLCSA 137 (265)
Q Consensus 80 ~l~~~~~~e~---------------~~--~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-----~l~~la~a 137 (265)
.+...++.+. +. .+....+...++.++..+|+++.|+..+++++++.+.. ..+....+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 3333333211 00 12234455667888888888888888888887765431 22233334
Q ss_pred HHHHHhccccHHHHHHHHHHHHhhcCC--C-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhcCC-------HHHHHHH
Q psy3174 138 WVHIANNVDKLNEAFYTLQDLIDKYGS--T-PMLV----NAQVAVLIAQDKYEEAWDLLQDTAGDS-------EDTLINN 203 (265)
Q Consensus 138 ~v~l~~g~~~~~eA~~~~~el~~~~p~--t-~~lL----n~~A~~~~~~g~~eEAe~~l~~al~~~-------pdtl~nl 203 (265)
.+.... |++++|...+++.....+. . .... ...+.++..+|++++|...+.+++... ...+.++
T Consensus 182 ~~~~~~--g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 182 QCSLAR--GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHH--TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHc--CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 444434 6788888888887654321 1 1111 145566778888888888888887662 2245677
Q ss_pred HHHHHHcCCCCccC
Q psy3174 204 MVTAGRLGKGNEMS 217 (265)
Q Consensus 204 ~~~~~~~Gk~~ea~ 217 (265)
+.++..+|+..++.
T Consensus 260 a~~~~~~g~~~~A~ 273 (373)
T 1hz4_A 260 ARAQILLGEFEPAE 273 (373)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 78888888776543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.52 E-value=8.5e-07 Score=65.94 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=67.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C-------HHHHHHHHHHHHHcCCCC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---S-------EDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~-------pdtl~nl~~~~~~~Gk~~ 214 (265)
.+++++|...|+++....|.++.+++.+|.++..+|++++|...+.++++. + +.++.+++.++..+|+..
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 378999999999999999999999999999999999999999999999987 4 778899999999999987
Q ss_pred ccC
Q psy3174 215 EMS 217 (265)
Q Consensus 215 ea~ 217 (265)
++.
T Consensus 97 ~A~ 99 (131)
T 1elr_A 97 DAI 99 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-05 Score=67.56 Aligned_cols=112 Identities=7% Similarity=-0.099 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHH-hc-cccHHHHHHHHHHHHhhcCC
Q psy3174 93 GTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDED--HTLTQLCSAWVHIA-NN-VDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d--~~l~~la~a~v~l~-~g-~~~~~eA~~~~~el~~~~p~ 164 (265)
++++++.+.++.+|.. .++++.|.+.|+++.+.++. ++.+...++.+... .| .+++++|+..|++..+. |.
T Consensus 82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~ 160 (212)
T 3rjv_A 82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR 160 (212)
T ss_dssp TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC
T ss_pred CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC
Confidence 3567777888888877 77888888888888877772 23333333333222 11 35788888888888777 55
Q ss_pred CHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy3174 165 TPMLVNAQVAVLIAQ-D-----KYEEAWDLLQDTAGD-SEDTLINNMV 205 (265)
Q Consensus 165 t~~lLn~~A~~~~~~-g-----~~eEAe~~l~~al~~-~pdtl~nl~~ 205 (265)
++..++.+|.++... | ++++|...++++.+. +++...++..
T Consensus 161 ~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~ 208 (212)
T 3rjv_A 161 TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDR 208 (212)
T ss_dssp TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556777788888764 2 788888888888877 7776655543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-06 Score=75.73 Aligned_cols=200 Identities=12% Similarity=-0.014 Sum_probs=130.5
Q ss_pred HHhhhhccHHHHHHHHhhccc---CChh--hhhhHHHHHHHHHHcccChhHHhhhc----------C---ChH-HHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA---TDPK--VLLEKDFYVCRSYLAQKKYKVVLEEK----------L---PEE-LSCIKV 76 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~---~~~~--~~~e~~~~~~Raylalg~~~~~l~ei----------~---~~~-l~~~~~ 76 (265)
.-.+..|+|..++..+++... ..++ ...........++..+|+++.++... . +|. ..+...
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 345568999999887644322 1222 22233445567789999997555433 1 132 233344
Q ss_pred HHHHhcCCCcCcc------------cc--cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC--Cc-H--HHH--HH
Q psy3174 77 LAEYLSIPSKNGS------------SN--FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE--DH-T--LTQ--LC 135 (265)
Q Consensus 77 ~A~~l~~~~~~e~------------~~--~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d~-~--l~~--la 135 (265)
++..+...++.+. .. .+....+...++.++...|+++.|...++++.++.+ +. . ... ++
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 5554433333221 01 122456788899999999999999999999987522 11 1 111 13
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHhhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C----HHHHHH
Q psy3174 136 SAWVHIANNVDKLNEAFYTLQDLIDKYGST----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----S----EDTLIN 202 (265)
Q Consensus 136 ~a~v~l~~g~~~~~eA~~~~~el~~~~p~t----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~----pdtl~n 202 (265)
.+++.+.. |++++|...+++.....|.. ...+..+|.+++.+|++++|...+++++.. + ++++.+
T Consensus 221 ~~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 221 RVIYWQMT--GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 33333334 78999999999987765532 335678999999999999999999999876 1 136678
Q ss_pred HHHHHHHcCCCCccC
Q psy3174 203 NMVTAGRLGKGNEMS 217 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~ 217 (265)
++.++..+|+..++.
T Consensus 299 la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHHTCHHHHH
T ss_pred HHHHHHHhCCHHHHH
Confidence 899999999876643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.50 E-value=5e-06 Score=78.68 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
.....+.++...|+++.|.+.|+++++..|......++.+|+... ..|++++|..+|+++...+|+++.++...+..+.
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~-~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 333444444444444444444444444444333333333333221 1234444444444444444444444444444444
Q ss_pred HcCCHHHHHHHHHHHhc
Q psy3174 178 AQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~ 194 (265)
.+|++++|..++++++.
T Consensus 437 ~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLT 453 (530)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHh
Confidence 44444444444444444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.6e-07 Score=72.64 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=71.2
Q ss_pred cccHHHHHHHHHHHHhh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHH
Q psy3174 145 VDKLNEAFYTLQDLIDK------------------YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINN 203 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~------------------~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl 203 (265)
.|++++|...|+++... .|..+.+++++|.|++.+|+|++|...+.++++. ++..+.++
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 48899999999999887 5666679999999999999999999999999998 67799999
Q ss_pred HHHHHHcCCCCccC----------CCCh-hhhc
Q psy3174 204 MVTAGRLGKGNEMS----------VSPP-FLFR 225 (265)
Q Consensus 204 ~~~~~~~Gk~~ea~----------p~hp-~~~~ 225 (265)
+.++..+|+..++. |+++ .+..
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 136 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999998765 8887 4443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-06 Score=73.88 Aligned_cols=115 Identities=10% Similarity=-0.057 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC--CHH
Q psy3174 94 THLEINALKIHTYLTMY----RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--TPM 167 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~----r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t~~ 167 (265)
+++++.+.++.+|.. + ++++|.+.|+++.+.+.......|+..+..-....+++++|+..|++..+..|. .+.
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 126 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD 126 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence 445555555555554 4 455555555555433322222222222110000024455555555555544331 244
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q psy3174 168 LVNAQVAVLIA----QDKYEEAWDLLQDTAGD--SEDTLINNMVTAGR 209 (265)
Q Consensus 168 lLn~~A~~~~~----~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~ 209 (265)
.++.+|.++.. .+++++|..+++++.+. +|+...|++.++..
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 55555555555 55555555555555544 44455555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=78.39 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
..+...++.+|+.+|+++.|.+.++++++++|+++.+....+.+.... +++++|...|+++.+..|.++..+..++.+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV--NDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 688999999999999999999999999999999987666666665545 789999999999999999999999999999
Q ss_pred HHHcCCHHHHH-HHHHHHhcC
Q psy3174 176 LIAQDKYEEAW-DLLQDTAGD 195 (265)
Q Consensus 176 ~~~~g~~eEAe-~~l~~al~~ 195 (265)
+..+|++++|+ .++.+.+..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999994 467776654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-06 Score=82.44 Aligned_cols=122 Identities=2% Similarity=0.013 Sum_probs=102.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
.|++..+....+.++...|+++.|.+.|+++++.+|+++. .+|++++ ...|++++|..+|++..+..|.+...
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT----LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch----HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 5899999999999999999999999999999999998741 2444443 34578999999999999998877766
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 169 VNAQVAV-LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 169 Ln~~A~~-~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+.+.|.+ +..+|++++|..+++++++. +|+++.+++.+...+|+..++.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 6666655 44699999999999999988 7889999999999999876543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.3e-07 Score=75.24 Aligned_cols=92 Identities=7% Similarity=0.012 Sum_probs=74.0
Q ss_pred HHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhcc------ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 107 LTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNV------DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 107 l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~------~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
.+++++++|.+.++++++.+|++.-. ++..++..+..-+ +.+++|+..|++.....|+.+..++++|.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 35678999999999999999998743 3333333322110 236799999999999999999999999999999
Q ss_pred cC-----------CHHHHHHHHHHHhcCCHH
Q psy3174 179 QD-----------KYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 179 ~g-----------~~eEAe~~l~~al~~~pd 198 (265)
+| +|++|..++++|++++|+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 85 899999999999999665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-06 Score=65.51 Aligned_cols=137 Identities=4% Similarity=-0.168 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3174 44 EKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQ 123 (265)
Q Consensus 44 e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~ 123 (265)
.....+...+...|+++.++.- +.......... +.......+...++.++..+|+++.|.+.+++++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~--------~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIA--------HEQRLLIAKEF-----GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556778888888866652 11111111100 1112234577888999999999999999999998
Q ss_pred ccCCC---c---HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC---C---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 124 DKDED---H---TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG---S---TPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 124 ~~~~d---~---~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p---~---t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
++.+. . .......+++.... +++++|...+++.....+ + ....+..+|.++..+|++++|...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 85332 1 11222333343333 789999999999875532 2 345788999999999999999999999
Q ss_pred HhcC
Q psy3174 192 TAGD 195 (265)
Q Consensus 192 al~~ 195 (265)
+++.
T Consensus 155 a~~~ 158 (164)
T 3ro3_A 155 HLEI 158 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=78.35 Aligned_cols=118 Identities=14% Similarity=0.030 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC------CC
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDE--DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG------ST 165 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p------~t 165 (265)
.+...+.+++.++...|++++|.+.+.+.++.+| +++-..+..+-+.+.. ||.+.|..+++++.+..| +.
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~--~r~d~A~k~l~~~~~~~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN--NNVSTASTIFDNYTNAIEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCccccccchH
Confidence 4556678999999999999999999999988886 6776666667776666 889999999999999988 34
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCcc
Q psy3174 166 PMLVNAQVAVLIAQD--KYEEAWDLLQDTAGDSED-----TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g--~~eEAe~~l~~al~~~pd-----tl~nl~~~~~~~Gk~~ea 216 (265)
+.+....||+.+.+| ++.+|..+++++.+..|+ +|.| +..++|+.+++
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence 555556699999999 999999999999888543 5666 89999998764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=63.74 Aligned_cols=86 Identities=13% Similarity=0.075 Sum_probs=65.1
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTL 200 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl 200 (265)
+|+++......+.+.+.. |++++|...|+++....|..+..+..+|.|+..+|++++|...++++++. +....
T Consensus 3 ~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp --CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 566665555555555444 77999999999999999988889999999999999999999999999987 44556
Q ss_pred HHHHHHHHHcCCC
Q psy3174 201 INNMVTAGRLGKG 213 (265)
Q Consensus 201 ~nl~~~~~~~Gk~ 213 (265)
..+..++...|+.
T Consensus 81 ~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 81 SELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccc
Confidence 6666666555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-07 Score=87.47 Aligned_cols=97 Identities=12% Similarity=0.011 Sum_probs=81.3
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++.+.+..++.+|..+|++++|.+.++++++++|++..+....+.+.... |++++|...|+++.+..|.++..+..
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~ 113 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL--GKFRAALRDYETVVKVKPHDKDAKMK 113 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCTTHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4667899999999999999999999999999999999886655555555545 78999999999999999988888888
Q ss_pred HHHH--HHHcCCHHHHHHHHH
Q psy3174 172 QVAV--LIAQDKYEEAWDLLQ 190 (265)
Q Consensus 172 ~A~~--~~~~g~~eEAe~~l~ 190 (265)
++.+ ++.+|++++|...++
T Consensus 114 l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 114 YQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 8888 999999999999999
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-07 Score=81.11 Aligned_cols=194 Identities=11% Similarity=0.014 Sum_probs=127.1
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChh-HHhhhc--CChHHHHHHHHHHHhc-CCCc-
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYK-VVLEEK--LPEELSCIKVLAEYLS-IPSK- 86 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~-~~l~ei--~~~~l~~~~~~A~~l~-~~~~- 86 (265)
+|+.---+..|+++.+...+.+....+|+. ++.|.-| ++.|..+ .++..+ ....+...+ .-+. .++.
T Consensus 10 ~~~~~~~~~~~d~~~A~~~F~~a~~~dP~~---~Daw~g~--~a~g~~~~~~L~~~~r~~~a~~~~~---~~l~l~p~~l 81 (282)
T 4f3v_A 10 LFESAVSMLPMSEARSLDLFTEITNYDESA---CDAWIGR--IRCGDTDRVTLFRAWYSRRNFGQLS---GSVQISMSTL 81 (282)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHH--HHTTCCCHHHHHHHHHTGGGTTHHH---HTTTCCGGGG
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHhChhh---hHHHHhH--HHccCCcHHHHHHHHHHHHHHHHHH---HHhcCChhhh
Confidence 455533456899999999986666666664 3677544 3334432 222211 000000000 0000 0000
Q ss_pred ---Cc-cccc-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHH
Q psy3174 87 ---NG-SSNF-------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 87 ---~e-~~~~-------~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
.. .+-| .+--++....+.++..+||+++|.+.|..+...+|+++ .+...+.+.+.. +++++|...|
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~--~r~~dA~~~l 158 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA--ERWTDVIDQV 158 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT--TCHHHHHHHH
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc--CCHHHHHHHH
Confidence 00 0111 23357777788899999999999999999988888888 777777776656 7899999999
Q ss_pred HHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCccC
Q psy3174 156 QDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 156 ~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
++.... |+. ..+...+|.++..+|+++||+..++++... .++.+++++.|+..+|+.+++.
T Consensus 159 ~~a~~~-~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 159 KSAGKW-PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp TTGGGC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhcc-CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 866443 221 236788899999999999999999999854 2357889999999999987754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=77.20 Aligned_cols=73 Identities=11% Similarity=-0.070 Sum_probs=68.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.|++++|...|+++....|.++.+++++|.+++.+|+|++|...++++++. ++..+.+++.++..+|+..++.
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 388999999999999999999999999999999999999999999999998 6668899999999999988765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.5e-06 Score=79.96 Aligned_cols=115 Identities=9% Similarity=-0.049 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHccCCCcHH--HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 93 GTHLEINALKIHTYLTMY---RNDLALKELKVMQDKDEDHTL--TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~---r~d~Aek~l~~~~~~~~d~~l--~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
..++++.+.++.+|...| ++++|.+.|+++.+.++.... ..|+..+..-....+++++|+..|+++. |..+.
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~ 249 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA 249 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH
Confidence 455668999999999999 999999999999999988876 4555544321112268899999999987 77778
Q ss_pred HHHHHHHH-H--HHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q psy3174 168 LVNAQVAV-L--IAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLG 211 (265)
Q Consensus 168 lLn~~A~~-~--~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~G 211 (265)
.++.+|.+ + ...|++++|..+++++.+. +|+...|++.++. .|
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cC
Confidence 88889988 4 5789999999999999988 8999999998887 66
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.39 E-value=8.2e-07 Score=72.95 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=66.0
Q ss_pred cccHHHHHHHHHHHHhhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHhcC-------CHH---HH--
Q psy3174 145 VDKLNEAFYTLQDLIDKYGS-------TPM-----LVNAQVAVLIAQDKYEEAWDLLQDTAGD-------SED---TL-- 200 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~-------t~~-----lLn~~A~~~~~~g~~eEAe~~l~~al~~-------~pd---tl-- 200 (265)
.|+|++|...|++..+..|+ ... +++++|.|+..+|+|+||...+.+|+++ +|+ .+
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 38999999999999998887 443 8999999999999999999999999988 776 77
Q ss_pred --HHHHHHHHHcCCCCccC
Q psy3174 201 --INNMVTAGRLGKGNEMS 217 (265)
Q Consensus 201 --~nl~~~~~~~Gk~~ea~ 217 (265)
+|+++++..+|+.++++
T Consensus 104 ~~~~rG~aL~~lgr~eEAl 122 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAM 122 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHCCCHHHHH
Confidence 89999999999988765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.9e-07 Score=67.68 Aligned_cols=90 Identities=10% Similarity=-0.073 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC--------
Q psy3174 149 NEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS-------- 217 (265)
Q Consensus 149 ~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~-------- 217 (265)
++|...|+++....|.++..++.+|.+++.+|++++|...++++++. +++++.+++.++..+|+..++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999987 6678999999999999987754
Q ss_pred --CCChhhhcHHHHHHHHHHHHh
Q psy3174 218 --VSPPFLFRSDETTATLDACGL 238 (265)
Q Consensus 218 --p~hp~~~~~~~~~~~FD~~~~ 238 (265)
|.++......+....+.++..
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 554444444444455555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.37 E-value=9e-08 Score=90.18 Aligned_cols=116 Identities=8% Similarity=-0.037 Sum_probs=86.5
Q ss_pred cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---------------HHHHHHHH
Q psy3174 109 MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---------------PMLVNAQV 173 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---------------~~lLn~~A 173 (265)
+++++.|...+....+..++........++..+.. ++|++|...|+++....|.. ..+++++|
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG--GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444444444444444 78999999999999999977 67999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
.|++++|+|++|...+.++++. ++..+.+++.++..+|+..++. |+++.+...
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 390 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999998 6779999999999999988765 887755443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.1e-07 Score=79.84 Aligned_cols=102 Identities=16% Similarity=0.027 Sum_probs=81.0
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc----HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc--CC-
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH----TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY--GS- 164 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~----~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~--p~- 164 (265)
.|+.+ ..+.++.+++..+|++.|++.|+.+..+.++. +-..++.++. .-|++++|...|++..... |.
T Consensus 132 ~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~----~LG~~~eAl~~l~~a~~g~~~P~~ 206 (282)
T 4f3v_A 132 GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA----NLALFTEAERRLTEANDSPAGEAC 206 (282)
T ss_dssp TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTSTTTTTT
T ss_pred CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH----HCCCHHHHHHHHHHHhcCCCCccc
Confidence 36667 88999999999999999999999887765221 2222222222 3388999999999997543 54
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+..+..+|.|+.++|+.+||...+++++..+|+
T Consensus 207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 5568899999999999999999999999999877
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.5e-06 Score=59.48 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPM-LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~-lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+++++|...|+++.+..|.++. .+..+|.++..+|++++|...++++++.
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5677777777777777777777 7777777777777777777777777776
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.9e-05 Score=70.08 Aligned_cols=158 Identities=9% Similarity=-0.035 Sum_probs=114.7
Q ss_pred HHHHHHHHHHccc---ChhHHhhhc------CChHHHHHHHHHHHhcCC----CcCcc-------cccCCCHHHHHHHHH
Q psy3174 45 KDFYVCRSYLAQK---KYKVVLEEK------LPEELSCIKVLAEYLSIP----SKNGS-------SNFGTHLEINALKIH 104 (265)
Q Consensus 45 ~~~~~~Raylalg---~~~~~l~ei------~~~~l~~~~~~A~~l~~~----~~~e~-------~~~~~~lE~~al~v~ 104 (265)
....+..+|...| ++..++.-+ .++....+..++..+... .+.+. .- ++++++.+.++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ 256 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 4556667777788 665555444 344444434455555432 11111 22 889999999999
Q ss_pred H-H--HHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 105 T-Y--LTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN---VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 105 ~-~--l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g---~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+ | ...+++++|.+.|+++.+.+.......|+ ++.. .| ..++++|+..|++.. |..+..++.+|.++..
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg--~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAADQPRAELLLG--KLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHH--HHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH--HHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 9 4 56899999999999998776444444444 4433 33 248999999999998 7788999999999987
Q ss_pred ----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 179 ----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 179 ----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
..++++|...++++.+. +|+...|++.++..
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQ 366 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHh
Confidence 44999999999999998 99999999988764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.7e-05 Score=69.57 Aligned_cols=188 Identities=10% Similarity=0.005 Sum_probs=123.1
Q ss_pred cCCcch-hHHHHHhhhhccHHHHHHHHhhcccCChhh----------------hhhHHHHHHHHHHcccChhHHhhhc--
Q psy3174 6 DNEVDE-LFDVRNSYYLGNYQQCIKEGQRLKATDPKV----------------LLEKDFYVCRSYLAQKKYKVVLEEK-- 66 (265)
Q Consensus 6 ~~~~de-lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~----------------~~e~~~~~~Raylalg~~~~~l~ei-- 66 (265)
|+.|.. |-..|..+-.|+|++|++.++++....+.. ..+....+...|..+|+++.+++-+
T Consensus 1 ~s~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 1 MSLPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp CCSTTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566655 455688899999999999865443222211 1123445578899999998766544
Q ss_pred ------CC---hHHHHHHH-HHHHhcCCCcCcc---------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 67 ------LP---EELSCIKV-LAEYLSIPSKNGS---------------SNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 67 ------~~---~~l~~~~~-~A~~l~~~~~~e~---------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
.. .....++. +..+....+..+. ++......+...++.+|..+|+++.|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 11 11223333 3333334443221 12244456778889999999999999999999
Q ss_pred HHcc----CCCc--HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc---CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q psy3174 122 MQDK----DEDH--TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY---GST----PMLVNAQVAVLIAQDKYEEAWDL 188 (265)
Q Consensus 122 ~~~~----~~d~--~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~---p~t----~~lLn~~A~~~~~~g~~eEAe~~ 188 (265)
++.. ++.. +-+.+.++.+.+.. +++.+|..+|+++.... +.. ..++..++..+...|+|.+|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKL--RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8763 2221 22333444444444 78999999999976543 322 23678889999999999999999
Q ss_pred HHHHhcC
Q psy3174 189 LQDTAGD 195 (265)
Q Consensus 189 l~~al~~ 195 (265)
+.++++.
T Consensus 239 ~~~a~~~ 245 (434)
T 4b4t_Q 239 FFESFES 245 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00023 Score=64.01 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=104.5
Q ss_pred cCCCHHHHHHHHHHH----HHc---CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHH--HHHHHHHHHHhhc
Q psy3174 92 FGTHLEINALKIHTY----LTM---YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLN--EAFYTLQDLIDKY 162 (265)
Q Consensus 92 ~~~~lE~~al~v~~~----l~~---~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~--eA~~~~~el~~~~ 162 (265)
+|++..+..-+..++ ... ++++.+.+.+.++++.+|.+.-+=.--.|+--.. ++++ +++.+++++.+.+
T Consensus 99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l--~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF--DLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cccChHHHHHHHHHHHHhC
Confidence 466777777777777 556 7788888888888888888873222222332112 4566 8888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC--------------CC
Q psy3174 163 GSTPMLVNAQVAVLIAQDK------YEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS--------------VS 219 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~------~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~--------------p~ 219 (265)
|.+...++..+++....|+ ++++.+...+++.. |.....++..+....|+..+.. |.
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 8888888888888888887 88888888888877 5557778888888888765422 44
Q ss_pred ChhhhcHH-----------HHHHHHHHHHhhcccc
Q psy3174 220 PPFLFRSD-----------ETTATLDACGLQSNSE 243 (265)
Q Consensus 220 hp~~~~~~-----------~~~~~FD~~~~~~~~~ 243 (265)
++.+.... +....||+++.+++|.
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence 55554443 3455677777666653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-06 Score=60.86 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTL-TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l-~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+..+.++...|+++.|.+.++++++.+|++.. .....+.+.... |++++|...|+++....|..+..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL--GDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 45788999999999999999999999999876 655555555444 78999999999999999988776532
Q ss_pred cCCHHHHHHHHHHHhcCC
Q psy3174 179 QDKYEEAWDLLQDTAGDS 196 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~~ 196 (265)
+.+.+|...+.++...+
T Consensus 75 -~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp -HHHHHHHHHHCCTTHHH
T ss_pred -HHHHHHHHHHHHHhccC
Confidence 67777777776665543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=73.28 Aligned_cols=135 Identities=8% Similarity=0.004 Sum_probs=100.3
Q ss_pred HHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcC-cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 48 YVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKN-GSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 48 ~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~-e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
.....+..+|+++.++... -+++...-......... .....+....++..++.+|+.+|++++|.+.++++++++
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y----~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKY----TKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHH----HHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3456688888888776632 11122111110000000 002346678899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3174 127 EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDL 188 (265)
Q Consensus 127 ~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~ 188 (265)
|++.-+....+.+.... +++++|...|+++.+..|.++.++..++.++..++++++|+..
T Consensus 304 p~~~~a~~~lg~~~~~~--g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGL--KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99886666666665545 7899999999999999999999999999999999999999764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=5e-06 Score=75.04 Aligned_cols=100 Identities=7% Similarity=0.057 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH-
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV- 175 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~- 175 (265)
.+...++.+|+.+|+++.|.+.++++++++|++.-+....+.+.+.. +++++|...|+++....|.++.+++.++.+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~--g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL--GQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 47888999999999999999999999999999886655555555444 789999999999999999988888888888
Q ss_pred HHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~~pd 198 (265)
....+..++|..++.+++..+|+
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Confidence 56677888999999999987554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=4e-05 Score=56.27 Aligned_cols=70 Identities=14% Similarity=-0.048 Sum_probs=59.4
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
.|++.+..+.++.+|..+|+++.|.+.|+++++.+|+++.+....+.+.... |++++|...|++..+..|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL--DRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhhh
Confidence 4788999999999999999999999999999999999887666666665545 789999999999887655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=5.5e-05 Score=59.29 Aligned_cols=101 Identities=9% Similarity=-0.140 Sum_probs=61.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH---
Q psy3174 102 KIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA--- 178 (265)
Q Consensus 102 ~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~--- 178 (265)
++.+|...+.++.|.+.|+++.+.+......+|+..+..-.....++++|+..|++..+. ..+...+.+|.++..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 556666666667777777777666444443344433331000135677777777777665 345666677777777
Q ss_pred -cCCHHHHHHHHHHHhcC-CHHHHHHHH
Q psy3174 179 -QDKYEEAWDLLQDTAGD-SEDTLINNM 204 (265)
Q Consensus 179 -~g~~eEAe~~l~~al~~-~pdtl~nl~ 204 (265)
.+++++|...+++|.+. +|+...++.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~~~A~~~l~ 136 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGSEDACGILN 136 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 77777777777777776 666655543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=1e-05 Score=66.35 Aligned_cols=67 Identities=6% Similarity=-0.053 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY----------EEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~----------eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
+.+++|...|++..+..|.++..++.+|.+++.+|++ ++|...+++|+++ +++++.|++.++..+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999986 5999999999998 66689999999999874
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=8.7e-05 Score=58.11 Aligned_cols=91 Identities=9% Similarity=-0.087 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----cCCHHHHH
Q psy3174 111 RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA----QDKYEEAW 186 (265)
Q Consensus 111 r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~----~g~~eEAe 186 (265)
++++|.+.|+++.+.++.... |+..+. .+..+++|+..|++..+. .++...+.+|.++.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~----~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC--LSLVSN----SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH--HHHHTC----TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh--HHHHHH----cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 588999999999998866654 333222 335677899999999887 567899999999999 99999999
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 187 DLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 187 ~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
.++++|.+. +|+...|++.++..
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHC
Confidence 999999999 99999999998876
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0029 Score=57.99 Aligned_cols=118 Identities=3% Similarity=-0.060 Sum_probs=100.6
Q ss_pred ccCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHH--------HHHHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTM-Y-RNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLN--------EAFYTLQD 157 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~-~-r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~--------eA~~~~~e 157 (265)
.+|++..+..-+..++..+ + +++.+.+.+.++++.+|.+. .+|.+-. ..-++++ +++.++++
T Consensus 118 ~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy-----~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k 192 (349)
T 3q7a_A 118 QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY-----HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE 192 (349)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH-----HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence 4688999999999999998 8 99999999999999999998 4554432 1114455 99999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQDK-------YEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g~-------~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
+.+.+|.+...++..+.+....|+ ++++.++..+++.. |.....++..++...|+.
T Consensus 193 ~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 193 MLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998 79999999999988 455777888888888876
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00015 Score=65.56 Aligned_cols=157 Identities=11% Similarity=0.081 Sum_probs=105.3
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCC-cCcc--------cccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPS-KNGS--------SNFGTHLEINALKIHTYLTMYRNDLALKEL 119 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~-~~e~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l 119 (265)
.+|.++..|+|+.+++. +-..+.... .... ......-+++..++.+|...|++++|.+.+
T Consensus 10 ~a~~l~~~~~y~eA~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~ 78 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQV-----------YLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFI 78 (434)
T ss_dssp HHHHHHHHTCHHHHHHH-----------HHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH-----------HHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45888999999877762 112222111 1111 001223356788899999999999999999
Q ss_pred HHHHccCC---CcHHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhcC---C---CHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3174 120 KVMQDKDE---DHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDLIDKYG---S---TPMLVNAQVAVLIAQDKYEEAWDLL 189 (265)
Q Consensus 120 ~~~~~~~~---d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el~~~~p---~---t~~lLn~~A~~~~~~g~~eEAe~~l 189 (265)
++++.+.+ ++....+....++.. ...+++++|..++++.....+ . -..+...+|.++..+|+|++|..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 79 PHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 99877532 222222222222222 345889999999999765432 2 2447888999999999999999999
Q ss_pred HHHhcC---------CHHHHHHHHHHHHHcCCCCcc
Q psy3174 190 QDTAGD---------SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 190 ~~al~~---------~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++++.. ..+++.+++.++..+|+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHH
Confidence 998764 234778999999999987654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=8e-05 Score=60.54 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhhc-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3174 112 NDLALKELKVMQDKDEDHTLTQLCSAWVHIANN-VDKLNEAFYTLQDLIDKY-G-STPMLVNAQVAVLIAQDKYEEAWDL 188 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g-~~~~~eA~~~~~el~~~~-p-~t~~lLn~~A~~~~~~g~~eEAe~~ 188 (265)
+..+++.|.+..+.++.++-++.-.||.-+.+. .+..+++..+++++.... | .....+..+|+.++++|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 556888899988888888888888888854432 256789999999999987 6 4567899999999999999999999
Q ss_pred HHHHhcCCHH
Q psy3174 189 LQDTAGDSED 198 (265)
Q Consensus 189 l~~al~~~pd 198 (265)
+.++++.+|+
T Consensus 94 ~~~lL~ieP~ 103 (152)
T 1pc2_A 94 VRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhcCCC
Confidence 9999998664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00054 Score=66.47 Aligned_cols=124 Identities=10% Similarity=-0.043 Sum_probs=103.3
Q ss_pred ccCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMY--RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~--r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
..|++..+..-+.-++..++ ++++|.+.+.++++.+|.+.-+-.--+|+-- .-+.++++++..++++.+.+|....+
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCCCccH
Confidence 45889999999999999999 6699999999999999999833333333311 22238999999999999999999999
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 169 VNAQVAVLIAQ--------------DKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 169 Ln~~A~~~~~~--------------g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
++..+.++..+ +++++|.+++.+|+.. |+....++..++...|+..+
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99999999885 6789999999999988 55588899999988888655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.001 Score=70.84 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGR 209 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~ 209 (265)
.+.-+..++..|..+|+|+||..+++.++.+ |....-.++.++..
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 3445667788899999999999999999887 33333344444433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00028 Score=52.05 Aligned_cols=48 Identities=10% Similarity=-0.005 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 148 LNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 148 ~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..+|..++++.....|+.+..+..+|..++++|+|++|...++++++.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444444444444444455555555555555555554444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.62 E-value=7.5e-05 Score=70.69 Aligned_cols=178 Identities=10% Similarity=0.075 Sum_probs=78.3
Q ss_pred hhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccc-cCCCHH
Q psy3174 19 YYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSN-FGTHLE 97 (265)
Q Consensus 19 fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~-~~~~lE 97 (265)
--.|.|.+++...+......++...... ..-+|-.+|+...+.+-+.+|...++..+++.+...+..+... +-....
T Consensus 72 e~~g~~EeAi~yl~~ark~~~~~~i~~~--Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~ 149 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 149 (449)
T ss_dssp ---------------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHHhCccchhHHH--HHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 3457777777765433332222222222 2356666788776555445555556777777776666554421 112223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
....++.++..+|+++.|.+.++++ +...+-..+..+.+ ..+.++.|......+. .+|+. +-.+..+|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv----~~~ef~lA~~~~l~L~-~~ad~---l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACV----DGKEFRLAQMCGLHIV-VHADE---LEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH---TCHHHHHHHHHHHH----HTTCHHHHHHTTTTTT-TCHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc---CCchhHHHHHHHHH----HcCcHHHHHHHHHHHH-hCHhh---HHHHHHHHH
Confidence 4555566999999999999999998 21122223333344 3367888855555433 44433 445667899
Q ss_pred HcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3174 178 AQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGR 209 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~ 209 (265)
.+|+|+||..++++++.. |-....-++.++..
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999987 55555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00043 Score=51.04 Aligned_cols=72 Identities=17% Similarity=0.013 Sum_probs=63.1
Q ss_pred cCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Q psy3174 92 FGTHLEINALKIHTYLTMYR---NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r---~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t 165 (265)
.|++++.++..++++...+. .+.|++.++++++.+|+++-+.+.++.+.+.. |+|++|+..++++.+..|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~--g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS--FRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCC
Confidence 37899999999999976666 79999999999999999998877777776665 78999999999999888763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0037 Score=60.52 Aligned_cols=122 Identities=6% Similarity=-0.098 Sum_probs=104.7
Q ss_pred cCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 92 FGTHLEINALKIHTYLTMYR----------NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r----------~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
.|++..+...+..++..+++ +++|.+.+.++++.+|++.-+-.--+|+--..+..++++|...++++.+.
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 47888999999999999999 99999999999999999995444444553324323679999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 162 YGSTPMLVNAQVAVLIAQD-KYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g-~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
+|.+...++..+++....| ++++|.+...++++. |.....+.+.+...+++.
T Consensus 139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 9999999999999999999 999999999999998 666889999998887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0015 Score=69.54 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=19.0
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcc
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLK 35 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~ 35 (265)
=+.||-..+.|.|.++++-.++..
T Consensus 989 s~~vKaf~~aglp~EaieLLEKiv 1012 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIV 1012 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467788889999999998876654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0019 Score=57.92 Aligned_cols=121 Identities=7% Similarity=-0.023 Sum_probs=103.1
Q ss_pred cCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHccCCCcHHHHHHHHHHH----HHhc-cccHHHHHHHHHHHHhhcCC
Q psy3174 92 FGTHLEINALKIHTYLTMY--RNDLALKELKVMQDKDEDHTLTQLCSAWVH----IANN-VDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~--r~d~Aek~l~~~~~~~~d~~l~~la~a~v~----l~~g-~~~~~eA~~~~~el~~~~p~ 164 (265)
.|++..+...+..++..++ ++++|.+.+..++..+|++.-+=.--.|+- -..+ .+++++++.+++++.+.+|.
T Consensus 63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 4678899999999999999 999999999999999999985444444442 1111 16899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHH--HHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 165 TPMLVNAQVAVLIAQDKYE--EAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~e--EAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
+..+++..+++....|+++ ++.+.+.++++. |-....+...+...+|+
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999 999999999988 55578888888888886
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00024 Score=67.19 Aligned_cols=167 Identities=10% Similarity=0.040 Sum_probs=39.2
Q ss_pred hhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-CChHHHHHHHHHHHhcCCCcCcc-c-------
Q psy3174 20 YLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-LPEELSCIKVLAEYLSIPSKNGS-S------- 90 (265)
Q Consensus 20 y~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-~~~~l~~~~~~A~~l~~~~~~e~-~------- 90 (265)
-.|+.+.|++.+++++ .|+ .-..++.+++.+|++..+++-. ..+....+.....-....+..+. -
T Consensus 15 ~~~~ld~A~~fae~~~--~~~----vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN--EPA----VWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC--ChH----HHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3566777777766552 222 1223467777888777666544 22221122221111111111111 0
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
+...+...-..++.+|.++||++.+++.++. |+. .+|.++. ...|+|++|..+|..+ .
T Consensus 89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~------~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~ 149 (449)
T 1b89_A 89 KKARESYVETELIFALAKTNRLAELEEFING-----PNN------AHIQQVGDRCYDEKMYDAAKLLYNNV--------S 149 (449)
T ss_dssp --------------------CHHHHTTTTTC-----C----------------------CTTTHHHHHHHT--------T
T ss_pred HhCccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcH------HHHHHHHHHHHHcCCHHHHHHHHHHh--------h
Confidence 0011123334455566666666666655532 111 1444443 2235666666666654 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk~ 213 (265)
.++.+|.|+.++|+|++|.+.++++ .+|.+.-..+.++...|+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEF 193 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcH
Confidence 4555666666666666666666666 2555555554555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.023 Score=54.06 Aligned_cols=107 Identities=9% Similarity=-0.015 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CCCHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKD--EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-GSTPMLVN 170 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~--~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-p~t~~lLn 170 (265)
-+.-....++..|.+.|+++.|.+.+++|.+.+ || +.+..+. +......|++++|..+|+++.+.. ..+...++
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~l--I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPA--LFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHH--HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHH--HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 356677788899999999999999999998853 44 4333222 111123488999999999998763 35778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC----CHHHHHHH
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD----SEDTLINN 203 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~----~pdtl~nl 203 (265)
.+-.++.+.|++++|..++++--+. ++.|...+
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 9999999999999999999987664 55554333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0017 Score=48.17 Aligned_cols=63 Identities=6% Similarity=-0.092 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q psy3174 146 DKLNEAFYTLQDLIDKY-------GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAG 208 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~-------p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~ 208 (265)
++|..|..-|+++.... +..+.+++.+|.|+.++|++++|...+++++.. |+.++.|+..+-.
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 34555555555444332 234567888899999999999999999999877 6667777764444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0049 Score=56.45 Aligned_cols=117 Identities=6% Similarity=-0.033 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----hccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
++-.+++-..-.+.....+.+.|.+.+.+++.++|++. .+|..-. ..+..+++++.+++++...+|.+..+
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y-----taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a 125 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY-----TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV 125 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence 33445555555566667778899999999999999998 4555432 22236999999999999999999999
Q ss_pred HHHHHHHHHHc-C-CHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 169 VNAQVAVLIAQ-D-KYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 169 Ln~~A~~~~~~-g-~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
++..+++.... + +++++..++.++++. |..+..+...+...+|+..
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 99999999998 8 999999999999998 6668889999999888876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.01 Score=56.57 Aligned_cols=104 Identities=10% Similarity=0.014 Sum_probs=82.0
Q ss_pred CChHHHHHHHHHHHcc--CCCcH-HHHHHHHHHHHHhccccHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHcCCHHHH
Q psy3174 110 YRNDLALKELKVMQDK--DEDHT-LTQLCSAWVHIANNVDKLNEAFYTLQDLIDK-YGSTPMLVNAQVAVLIAQDKYEEA 185 (265)
Q Consensus 110 ~r~d~Aek~l~~~~~~--~~d~~-l~~la~a~v~l~~g~~~~~eA~~~~~el~~~-~p~t~~lLn~~A~~~~~~g~~eEA 185 (265)
++++.|.++|.+|.+. .||.. .+.+..++. ..|++++|+.+|+++... ...+...+|.+-..+.+.|++++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~----~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV----AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 3478899999999885 34433 222223333 348899999999999876 345778899999999999999999
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHcCCCCccC
Q psy3174 186 WDLLQDTAGD----SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 186 e~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
..++.+..+. +..|...++.++...|+.+++.
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~ 195 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVY 195 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHH
Confidence 9999998877 6668889999999999987764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0063 Score=56.16 Aligned_cols=125 Identities=12% Similarity=0.105 Sum_probs=74.7
Q ss_pred CCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHccCCCcHHHHHHHHHHHHH--hcc----ccHHHHHHHHHHH--H
Q psy3174 93 GTHLEIN--ALKIHTYLTMYR---NDLALKELKVMQDKDEDHTLTQLCSAWVHIA--NNV----DKLNEAFYTLQDL--I 159 (265)
Q Consensus 93 ~~~lE~~--al~v~~~l~~~r---~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~--~g~----~~~~eA~~~~~el--~ 159 (265)
|.++++. +++++-++..+. +..|...|.++++++|+.....-..+|..+. ..+ ........-++.. .
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4555543 334444444433 4678888888888888876554433333322 111 1111111111111 1
Q ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHH--HHHHHHHHHcCCCCccC
Q psy3174 160 DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTL--INNMVTAGRLGKGNEMS 217 (265)
Q Consensus 160 ~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl--~nl~~~~~~~Gk~~ea~ 217 (265)
...|.++..+..+|.++..+|++++|...+++|+.++|..+ .-++.++...|++.++.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34567788888888888888888888888888888855533 46677888888877654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0012 Score=51.79 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=73.2
Q ss_pred HcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhc-C-CCHHHHHHHHHHHHHcCCHHH
Q psy3174 108 TMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDKY-G-STPMLVNAQVAVLIAQDKYEE 184 (265)
Q Consensus 108 ~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~~-p-~t~~lLn~~A~~~~~~g~~eE 184 (265)
....+..+++.|.+....++.+.-++.-.||.-+.+.. ...++++.+++++.... | ..-..+..+|+.++++|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 33446778888998888888888888888888544322 55667999999998886 5 355688999999999999999
Q ss_pred HHHHHHHHhcCCHH
Q psy3174 185 AWDLLQDTAGDSED 198 (265)
Q Consensus 185 Ae~~l~~al~~~pd 198 (265)
|..++...|+.+|+
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0045 Score=55.44 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=85.8
Q ss_pred cCCCHHHHHHHHHHHHH---c--C------ChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHH---hccccHHHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLT---M--Y------RNDLALKELKVMQDKDED--HTLTQLCSAWVHIA---NNVDKLNEAFYTL 155 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~---~--~------r~d~Aek~l~~~~~~~~d--~~l~~la~a~v~l~---~g~~~~~eA~~~~ 155 (265)
.+++.|.++..+.+... . | ....|+..+++++++||+ +--+....+-++.. -++|..++|..+|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 37788888888877754 2 2 256788899999999998 43333333333322 3458999999999
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCC----HH-HHHHHH
Q psy3174 156 QDLIDKYGS-TPMLVNAQVAVLIA-QDKYEEAWDLLQDTAGDS----ED-TLINNM 204 (265)
Q Consensus 156 ~el~~~~p~-t~~lLn~~A~~~~~-~g~~eEAe~~l~~al~~~----pd-tl~nl~ 204 (265)
++.....|. .+....-.|.-++. +|++++|...+++|+..+ |+ .++|.+
T Consensus 228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999996 58899999999988 599999999999999983 43 455543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.012 Score=53.46 Aligned_cols=123 Identities=6% Similarity=-0.101 Sum_probs=99.8
Q ss_pred ccCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 91 NFGTHLEINALKIHTYLTMYR----------NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r----------~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
..|++..+...+..++..+++ ++.+.+.+..++..+|.+.-+=.--.|+--..|...+++++.++.++.+
T Consensus 59 ~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~ 138 (331)
T 3dss_A 59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 138 (331)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 459999999999999988877 6788888889999999998544444455332332358899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 161 KYGSTPMLVNAQVAVLIAQDK-YEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 161 ~~p~t~~lLn~~A~~~~~~g~-~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
.+|.+..+++..+++....|+ ++++.+...++++. |.....+.+.+...++..
T Consensus 139 ~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999998 68999999999987 556888888888888654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.025 Score=51.22 Aligned_cols=88 Identities=10% Similarity=-0.056 Sum_probs=73.0
Q ss_pred ccCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hcccc-HHHHHHHHHHHHhhcCC
Q psy3174 91 NFGTHLEINALKIHTYLTMYR--NDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDK-LNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r--~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~-~~eA~~~~~el~~~~p~ 164 (265)
.+|++..+..-+..++..+++ ++.+...+.++++.+|.+. .||.+-. ..-++ +++++..++++...+|.
T Consensus 103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy-----~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-----HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 469999999999999999995 8999999999999999998 5555433 12245 68999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHH
Q psy3174 165 TPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~e 183 (265)
+..+++..+.+....+...
T Consensus 178 N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHHHhhhcc
Confidence 9999999999888776543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0084 Score=55.32 Aligned_cols=103 Identities=12% Similarity=-0.060 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHH--HHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 93 GTHLEINALKIHTYLTMY--------RNDLALKELKV--MQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~--------r~d~Aek~l~~--~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
|+...+.+.++.+|.... +.......++. ....+|++..+..+.+.+.+.. |++++|...++++....
T Consensus 230 P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~--gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 230 PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK--GKTDESYQAINTGIDLE 307 (372)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcC
Confidence 566666666666664311 11122223332 2346788888888888877766 78999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
| +...+..+|+++...|++++|.+.+.+|+.++|.
T Consensus 308 ~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 308 M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6 4677789999999999999999999999999554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.031 Score=41.10 Aligned_cols=78 Identities=12% Similarity=-0.124 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-------CCc--HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKD-------EDH--TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~-------~d~--~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t 165 (265)
+.+--+.++..+..+++++.|..-|+.+++.. .+. +..+|+.++. ..|++++|..+++++....|..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~----~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY----QQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH----HccCHHHHHHHHHHHHhcCCCC
Confidence 44555678999999999999999999998842 222 2334444433 3378999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy3174 166 PMLVNAQVAVL 176 (265)
Q Consensus 166 ~~lLn~~A~~~ 176 (265)
+.+++++++.-
T Consensus 80 ~~~~~n~~~~~ 90 (104)
T 2v5f_A 80 QRANGNLKYFE 90 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhHHHHH
Confidence 98888876443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0049 Score=49.89 Aligned_cols=83 Identities=11% Similarity=-0.042 Sum_probs=69.4
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCC-H----HHHHHHHHHHHHcCCCCccC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD---KYEEAWDLLQDTAGDS-E----DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g---~~eEAe~~l~~al~~~-p----dtl~nl~~~~~~~Gk~~ea~ 217 (265)
+.++.+..-|++..+..|.++.+....|||+++-. ++.++..+|++.+..+ | |.++|+++.+..+|+..++.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34566777788877777789999999999999988 7779999999999885 6 48999999999999988765
Q ss_pred ----------CCChhhhcHHH
Q psy3174 218 ----------VSPPFLFRSDE 228 (265)
Q Consensus 218 ----------p~hp~~~~~~~ 228 (265)
|+|+-+..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHH
Confidence 99987776644
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.049 Score=56.45 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcc----CCCcHHHHHHH--HHHHHHhccccHHHHHHHHHHHHhh-cCCCHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDK----DEDHTLTQLCS--AWVHIANNVDKLNEAFYTLQDLIDK-YGSTPMLVNA 171 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~----~~d~~l~~la~--a~v~l~~g~~~~~eA~~~~~el~~~-~p~t~~lLn~ 171 (265)
+..++..|++.|++++|.+.+..|.+. -..+++|...+ +|. ..|+.++|..+|+++.+. ...+...+|.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glc----k~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA----RQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 556677999999999999999887653 13445444333 333 238899999999999877 3467888999
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHhcC--CHHHHH
Q psy3174 172 QVAVLIAQDKY-EEAWDLLQDTAGD--SEDTLI 201 (265)
Q Consensus 172 ~A~~~~~~g~~-eEAe~~l~~al~~--~pdtl~ 201 (265)
+-.++.+.|+. ++|..++.+-.+. .||+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vt 238 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhh
Confidence 98899999985 7899999998877 888553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.079 Score=52.47 Aligned_cols=33 Identities=6% Similarity=-0.129 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
|.+..+....+......|+++.|+++|.++++.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666666666677777777777777777777653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.027 Score=44.48 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=65.6
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 115 ALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDKYGS-TPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~~p~-t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
.++.|.+=. -+..++-++.--||.-+.+.. +..++++.+++++....|. .-..+..+|+.+.++|+|++|..+....
T Consensus 26 l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 26 LRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344454432 466678888888998555433 5677999999999988884 5668999999999999999999999999
Q ss_pred hcCCHH
Q psy3174 193 AGDSED 198 (265)
Q Consensus 193 l~~~pd 198 (265)
|+..|+
T Consensus 105 L~~eP~ 110 (134)
T 3o48_A 105 FEHERN 110 (134)
T ss_dssp HTTCTT
T ss_pred HhhCCC
Confidence 998655
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.072 Score=52.77 Aligned_cols=129 Identities=10% Similarity=0.024 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDK-DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~-~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
......+....+.|..+.|+++|.++++. .+-....-+..+.+.... +++++.|..+|+...+.+|.++..++..+..
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 35566667777789999999999999876 332222222223332222 3558999999999999999999998888888
Q ss_pred HHHcCCHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGDSE------DTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~~p------dtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
....|+.+.|..++++|+...| +++...+..-...|....+. |+.|-+.-+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 8999999999999999999833 24445566666677664322 777644444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.056 Score=43.21 Aligned_cols=83 Identities=10% Similarity=0.024 Sum_probs=64.2
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 115 ALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDKYGS-TPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~~p~-t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
.++.|.+-.. +..++-++.--||.-+.+.. +..++++.+++++....|. .-..+..+|+.+.++|+|.+|..+....
T Consensus 25 lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 25 LRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444312 35677777888898555332 6678999999999999885 5558999999999999999999999999
Q ss_pred hcCCHH
Q psy3174 193 AGDSED 198 (265)
Q Consensus 193 l~~~pd 198 (265)
|+..|+
T Consensus 104 L~~eP~ 109 (144)
T 1y8m_A 104 FEHERN 109 (144)
T ss_dssp HHTCCC
T ss_pred HhcCCC
Confidence 998554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.3 Score=39.51 Aligned_cols=121 Identities=9% Similarity=-0.025 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHccCCCcH---HHHHHHHHHHHH--hccccHHHHHHHHHHHHhh
Q psy3174 93 GTHLEINALKIHTYLTMYRN------DLALKELKVMQDKDEDHT---LTQLCSAWVHIA--NNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~------d~Aek~l~~~~~~~~d~~---l~~la~a~v~l~--~g~~~~~eA~~~~~el~~~ 161 (265)
|.++|........+.+.|++ +.-...|.++...-|+.. -..-+--||..+ ..-+..++|..+|+.+...
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 67888888888888888998 887888988887555432 112334455555 3336788999999998777
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~ 213 (265)
|.....+...-|--.++||+...|..+|.+|+.+ .|--+...+..-...||+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~~ 143 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQKK 143 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCCC
Confidence 7777889999999999999999999999999999 555666667777788886
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.41 Score=39.13 Aligned_cols=113 Identities=5% Similarity=-0.105 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---CCCc-HHHHHHHHHHHHH---hccccHHHHHHHHHHHHhh-----
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDK---DEDH-TLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDK----- 161 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~---~~d~-~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~----- 161 (265)
++.=++...++.++..+-|+-|+-....++.. ++|- +..+-+++.+.++ -++++|..|...|+++.+.
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 34445666778888888899888877775553 3443 2222222222222 3568899999999996421
Q ss_pred -cCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCHHHHHHHHHH
Q psy3174 162 -YGS-------------------TPMLVNAQVAVLIAQDKYEEAWDLLQDTAG--DSEDTLINNMVT 206 (265)
Q Consensus 162 -~p~-------------------t~~lLn~~A~~~~~~g~~eEAe~~l~~al~--~~pdtl~nl~~~ 206 (265)
.+. ...+-.-+|.|++.+|++.+|...++..=. +.|.+-.-|+.+
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 111 124778899999999999999999876533 377765555544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.53 E-value=1.8 Score=39.94 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=104.3
Q ss_pred HHHHHHHHHcccChhHHhhhc-----------CChHHHHHHHHHHHhcCCCcCcc--------------cccCCCHH--H
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEK-----------LPEELSCIKVLAEYLSIPSKNGS--------------SNFGTHLE--I 98 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei-----------~~~~l~~~~~~A~~l~~~~~~e~--------------~~~~~~lE--~ 98 (265)
..-+.+.|..+|+++.+.+-| ..-..+.++.+.+++..-..... .+....+- +
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333467788888887554444 12225567788877765332211 11111222 2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHc----cCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhc----CC---C
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQD----KDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKY----GS---T 165 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~----~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~----p~---t 165 (265)
-.-++..|+..|++..|.+.+.++.+ .|+...+. .+.++-+.. ..+++..+...+....... ++ .
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~--~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH--ALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 23567899999999999998888877 34333333 233333333 3478888888888864321 21 2
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHhcC-----CH---HHHHHHHHHHHHcCCCCc
Q psy3174 166 PMLVNAQVAVLI-AQDKYEEAWDLLQDTAGD-----SE---DTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 166 ~~lLn~~A~~~~-~~g~~eEAe~~l~~al~~-----~p---dtl~nl~~~~~~~Gk~~e 215 (265)
..+.-.-|..|+ ..++|.+|...+-++++. .| +++..++.|...++...+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~e 238 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDD 238 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 224566788899 899999999999999754 44 356677777777776433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=93.40 E-value=1.4 Score=41.45 Aligned_cols=121 Identities=11% Similarity=0.001 Sum_probs=82.2
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHH-----------------------------------H
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLC-----------------------------------S 136 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la-----------------------------------~ 136 (265)
.|.+.++....++.+...|+++.|.+.|.+++.. |.+...-++ .
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 4788999999999999999999999999999998 876432211 1
Q ss_pred HHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3174 137 AWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD-KYEEAWDLLQDTAGD---SEDTLINNMVTAGR 209 (265)
Q Consensus 137 a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g-~~eEAe~~l~~al~~---~pdtl~nl~~~~~~ 209 (265)
.|+..+ ...+.++.|..+|+.+ ...+.+..++...|......| +.+.|..+++.+++. +|+.....+-....
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 233322 1234477788888887 332245556655566666566 488888888888875 56665555555556
Q ss_pred cCCCC
Q psy3174 210 LGKGN 214 (265)
Q Consensus 210 ~Gk~~ 214 (265)
.|...
T Consensus 367 ~~~~~ 371 (493)
T 2uy1_A 367 IGDEE 371 (493)
T ss_dssp HTCHH
T ss_pred cCCHH
Confidence 66543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.76 Score=35.72 Aligned_cols=83 Identities=10% Similarity=-0.052 Sum_probs=68.0
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhcCC-HH----HHHHHHHHHHHcCCCCccC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEE---AWDLLQDTAGDS-ED----TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eE---Ae~~l~~al~~~-pd----tl~nl~~~~~~~Gk~~ea~ 217 (265)
+.+..+..-|++.....+.++......||++++-....+ +..+|++.+..+ |+ .++.+++.+..+|+..++.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 446667777777777777889999999999999888777 899999998884 73 8899999999999987764
Q ss_pred ----------CCChhhhcHHH
Q psy3174 218 ----------VSPPFLFRSDE 228 (265)
Q Consensus 218 ----------p~hp~~~~~~~ 228 (265)
|+|+=+..+..
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHH
Confidence 98887776644
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.16 Score=41.58 Aligned_cols=76 Identities=9% Similarity=0.023 Sum_probs=56.9
Q ss_pred HhccccHHHHHHHHHHHHhh---cCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CH---------
Q psy3174 142 ANNVDKLNEAFYTLQDLIDK---YGS--TP----MLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SE--------- 197 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~---~p~--t~----~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~p--------- 197 (265)
....+-|+.|..+..-+... .|+ +| .++..+|.++..+|+|..|+..+++|+.. ++
T Consensus 30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 33447899999999887543 233 22 27889999999999999999999999875 32
Q ss_pred -------------HHHHHHHHHHHHcCCCCccC
Q psy3174 198 -------------DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 198 -------------dtl~nl~~~~~~~Gk~~ea~ 217 (265)
|+-+..+.|+..+|++.+++
T Consensus 110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 45567788888888877654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.93 E-value=7.8 Score=35.92 Aligned_cols=236 Identities=13% Similarity=0.023 Sum_probs=129.2
Q ss_pred cchhHHHHHhhhhccHHHHHHHH---hhcccCChh-h-hhhHHHHHHHHHHcccChhHHhhhc-----CC---hH--HHH
Q psy3174 9 VDELFDVRNSYYLGNYQQCIKEG---QRLKATDPK-V-LLEKDFYVCRSYLAQKKYKVVLEEK-----LP---EE--LSC 73 (265)
Q Consensus 9 ~delf~vr~~fy~G~Y~~~i~~~---~~~~~~~~~-~-~~e~~~~~~Raylalg~~~~~l~ei-----~~---~~--l~~ 73 (265)
+|+.|.-=...-.|+++.|++.. ++-.....+ . ......-+.+.+...|+++...+.+ .+ +. ...
T Consensus 17 ~~~~~~~~~~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~ 96 (445)
T 4b4t_P 17 LKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYM 96 (445)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44444333334568999999874 322211111 1 1122223345566667776443322 11 11 223
Q ss_pred HHHHHHHhcCCCcC--cc-------------cc-cCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHc----cCCCc--
Q psy3174 74 IKVLAEYLSIPSKN--GS-------------SN-FGT--HLEINALKIHTYLTMYRNDLALKELKVMQD----KDEDH-- 129 (265)
Q Consensus 74 ~~~~A~~l~~~~~~--e~-------------~~-~~~--~lE~~al~v~~~l~~~r~d~Aek~l~~~~~----~~~d~-- 129 (265)
++..-+|+...... +. +. +.+ ..-+...++.+|...|++++|.+.+..++. ..+..
T Consensus 97 V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k 176 (445)
T 4b4t_P 97 IQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK 176 (445)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 55566666422211 10 11 111 122446778999999999999999999864 22322
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---cCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CH
Q psy3174 130 TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK---YGSTPM----LVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SE 197 (265)
Q Consensus 130 ~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~---~p~t~~----lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~p 197 (265)
+-..+-+..+.+.. +++..|..++.++..+ .+..+. ....+|..++..++|-+|-..+.++++. +|
T Consensus 177 ve~~l~q~rl~l~~--~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~ 254 (445)
T 4b4t_P 177 IQFILEQMELSILK--GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDE 254 (445)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCH
Confidence 22345555565555 7899999999997532 222332 4678899999999999999999999875 66
Q ss_pred H----HHHHHHHHHHHcCCCCccC---------CCChhhhcHHHHHHH--------HHHHHhhccccCCC
Q psy3174 198 D----TLINNMVTAGRLGKGNEMS---------VSPPFLFRSDETTAT--------LDACGLQSNSESTP 246 (265)
Q Consensus 198 d----tl~nl~~~~~~~Gk~~ea~---------p~hp~~~~~~~~~~~--------FD~~~~~~~~~~~~ 246 (265)
. ++.+.+.|....+...+.. +..+.+..+...... |+.+...|.+.+..
T Consensus 255 ~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 255 AKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 5 3344444444444333221 333333344443333 57777788766544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.4 Score=42.82 Aligned_cols=91 Identities=13% Similarity=0.010 Sum_probs=65.4
Q ss_pred cCCCcHH--HHHHHHHHHHHh---cc----ccHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q psy3174 125 KDEDHTL--TQLCSAWVHIAN---NV----DKLNEAFYTLQDLIDKYGS--TPMLVNAQVAVLIAQ-----DKYEEAWDL 188 (265)
Q Consensus 125 ~~~d~~l--~~la~a~v~l~~---g~----~~~~eA~~~~~el~~~~p~--t~~lLn~~A~~~~~~-----g~~eEAe~~ 188 (265)
.+++++- .-.+.+|...+. |+ +...+|..+++++.+..|. ....+..+|+.|.+. |+.++|+.+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 4555543 334444544332 22 4567899999999999998 566899999999995 999999999
Q ss_pred HHHHhcCC----HHHHHHHHHHHHHc-CCCCc
Q psy3174 189 LQDTAGDS----EDTLINNMVTAGRL-GKGNE 215 (265)
Q Consensus 189 l~~al~~~----pdtl~nl~~~~~~~-Gk~~e 215 (265)
+++|++++ +++.+-.+..+... |+..+
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 99999994 44556666666564 55443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=91.06 E-value=1.9 Score=40.45 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ 179 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~ 179 (265)
...+..+...+.++.|+++|.++ ...+...-.-+..|.+....+ +.++.|..+|+.....+|+++..+...+......
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~-~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT-GSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 33444555677899999999999 322222211222233322232 2599999999999999999888776677777889
Q ss_pred CCHHHHHHHHHHHh
Q psy3174 180 DKYEEAWDLLQDTA 193 (265)
Q Consensus 180 g~~eEAe~~l~~al 193 (265)
|+.+.|..++.++.
T Consensus 368 ~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 368 GDEENARALFKRLE 381 (493)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988873
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=90.56 E-value=3.5 Score=39.79 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=56.3
Q ss_pred HHHHHhhhhccHHHHHH-HHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccc
Q psy3174 13 FDVRNSYYLGNYQQCIK-EGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSN 91 (265)
Q Consensus 13 f~vr~~fy~G~Y~~~i~-~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~ 91 (265)
+..+.....|+|..|.+ .+..+ .+...+ -...|.+..+|..+.++.-...|..+ +....++-......+..+
T Consensus 604 ~~~~~~~~~~~~~~a~~~~l~~i---~~~~~~---~~~~~~l~~~~~~~~a~~~~~~~~~~-f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 604 LEFQTLTLRGEIEEAIENVLPNV---EGKDSL---TKIARFLEGQEYYEEALNISPDQDQK-FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHTGGGC---CCHHHH---HHHHHHHHHTTCHHHHHHHCCCHHHH-HHHHHHHTCHHHHHHHHT
T ss_pred HHHhHHHHhCCHHHHHHHHHhcC---CchHHH---HHHHHHHHhCCChHHheecCCCcchh-eehhhhcCCHHHHHHHHH
Confidence 44455566778877766 33211 101111 23346666777777666544333322 111111100000001123
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
..++....-.+++.++..++++.|++.|.++..
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 345677888888899999999999999988744
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.53 E-value=1.1 Score=44.88 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=64.5
Q ss_pred hcc-HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC-------CCcCccc--
Q psy3174 21 LGN-YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI-------PSKNGSS-- 90 (265)
Q Consensus 21 ~G~-Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~-------~~~~e~~-- 90 (265)
+|+ |+.|++.++++....|.. .++.+++++..-... ...++.+++++.+-++. ....+..
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~----~~~~~~~~i~~~~~~------~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH----DIYYKTAMITILDHI------ETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHTTC------GGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 455 577888887777777765 355556666532211 12234455555544321 1111110
Q ss_pred -ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 91 -NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 91 -~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
..+-.-+++..++.-++..||++.|.+.-+++....|++-.+ .||++|+.+ |+++.|+....-
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l----~d~e~ALLtLNS 396 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKK----EEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh----ccHHHHHHHHhc
Confidence 012233455566666666677777777777666666666543 444444432 446666655443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.60 E-value=2.3 Score=44.18 Aligned_cols=71 Identities=18% Similarity=0.063 Sum_probs=59.2
Q ss_pred ccccHHHHHHHHHHHHh----hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHH--HHHHHHHHHHHcCCCC
Q psy3174 144 NVDKLNEAFYTLQDLID----KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SED--TLINNMVTAGRLGKGN 214 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~----~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pd--tl~nl~~~~~~~Gk~~ 214 (265)
..|++++|+.+|+++.. ....+...+|.+-..+.+.|+++||.+++.+-.+. .|| |...+|.++...|+..
T Consensus 139 K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~ 217 (1134)
T 3spa_A 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217 (1134)
T ss_dssp HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCH
T ss_pred hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcH
Confidence 44899999999988753 23467889999999999999999999999999887 666 6677888899999863
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.47 E-value=2.1 Score=42.91 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=77.9
Q ss_pred cCC-hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhh------------------cCCCHHH
Q psy3174 109 MYR-NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDK------------------YGSTPML 168 (265)
Q Consensus 109 ~~r-~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~------------------~p~t~~l 168 (265)
.+| +|.|...+++..+.+|... ..++.+++++.... .+=-+|..+..+..+. .|.+..+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 455 6999999999988777654 34455666654322 2333566666554421 1112347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|+-+|--++..|+|+-|..+-++|.+. .-.+.+.|+.|+..+|+.+.|+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence 888899899999999999999999887 5558999999999999998876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=87.94 E-value=6.9 Score=37.66 Aligned_cols=137 Identities=11% Similarity=0.015 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHcccChhHHhh-hcCChH-HHHHHHHHHHhcCCCcCcc-cccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy3174 43 LEKDFYVCRSYLAQKKYKVVLE-EKLPEE-LSCIKVLAEYLSIPSKNGS-SNFGTHLEINALKIHTYLTMYRNDLALKEL 119 (265)
Q Consensus 43 ~e~~~~~~Raylalg~~~~~l~-ei~~~~-l~~~~~~A~~l~~~~~~e~-~~~~~~lE~~al~v~~~l~~~r~d~Aek~l 119 (265)
+....+.+...+..++++.+.. -+...+ -..+...+.|+...+..+. -....+....+. ..+..|+++.|.+..
T Consensus 599 l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~---~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 599 ISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFE---LALKVGQLTLARDLL 675 (814)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCHHHHHH---HHHHHTCHHHHHHHH
T ss_pred ECcHHHHHhHHHHhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCCcchhee---hhhhcCCHHHHHHHH
Confidence 3445566777788888887665 331111 1223667777776654332 122333333333 678899999998886
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3174 120 KVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK--------YGSTPMLVNAQVAVLIAQDKYEEAWDLL 189 (265)
Q Consensus 120 ~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~--------~p~t~~lLn~~A~~~~~~g~~eEAe~~l 189 (265)
+. ++++..-.++|...+ ..++++.|...|..+.+- .......+-.++...+..|+++.|+.++
T Consensus 676 ~~---~~~~~~W~~la~~al----~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 676 TD---ESAEMKWRALGDASL----QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp TT---CCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Hh---hCcHhHHHHHHHHHH----HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 54 455555455555444 347899999999986432 1233344445555555666666665554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.10 E-value=5.3 Score=30.02 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=15.0
Q ss_pred HHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q psy3174 176 LIAQDKYEEAWDLLQDTAGDSEDTLINNMVTAGRLGK 212 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk 212 (265)
+|-+|+|++|..+.+..- .||+.-.++-|.+++|-
T Consensus 50 LmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~rlGl 84 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA--YPDLEPWLALCEYRLGL 84 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC--CchHHHHHHHHHHhccc
Confidence 444555555443331110 44444444444444443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.20 E-value=6.1 Score=36.37 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC--CCHH---
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG--STPM--- 167 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p--~t~~--- 167 (265)
-..+...++..|+..|+++.|.+.|.++.+. ...+.+- +....+.+..-.+++..+...+.++..... .++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid-~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKID-VMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3446677889999999999999999999884 4444432 222233333333779999999998864422 1222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 -LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 -lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+.-..|..++..++|.+|...+.+++..
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 4456677899999999999999998764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.37 E-value=20 Score=32.34 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCC--------C-cHH----HHHHHHHH-------HHHhccccHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDE--------D-HTL----TQLCSAWV-------HIANNVDKLNEAFYTLQ 156 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--------d-~~l----~~la~a~v-------~l~~g~~~~~eA~~~~~ 156 (265)
+-....+......|+.+.|...+.+++.+-. + .-+ ..+.+.|+ ......|++.+|....+
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555667899999999999988421 1 111 12222222 22234488999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 157 DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 157 el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
.+...+|-.-.+.-.+-.++.+.|+..+|...|++.-.
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998777777788889999999999999887754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.65 E-value=10 Score=39.35 Aligned_cols=121 Identities=12% Similarity=-0.001 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc-cCCCcHHHHHHHHHHH--------------------HHhccccHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQD-KDEDHTLTQLCSAWVH--------------------IANNVDKLNEA 151 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~-~~~d~~l~~la~a~v~--------------------l~~g~~~~~eA 151 (265)
+.++-..++++++++..|++++|...|+++-. +..+..+..+-..+.. +....+.++-+
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 66777789999999999999999999988743 1121111110011111 11222334444
Q ss_pred HHHHHHHHhhcC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC
Q psy3174 152 FYTLQDLIDKYG-STP----MLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 152 ~~~~~el~~~~p-~t~----~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~ 213 (265)
..+-+-..+..+ +++ .++..+-..++..|+|++|...+...=.. --+.|..+++..+..|+.
T Consensus 919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCh
Confidence 444444444332 322 25677888899999999998888654322 566777887777766654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.55 E-value=5.1 Score=30.07 Aligned_cols=17 Identities=12% Similarity=-0.228 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHcCC
Q psy3174 196 SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 196 ~pdtl~nl~~~~~~~Gk 212 (265)
.||+.-.++-|.+++|-
T Consensus 67 ~pdlepw~ALce~rlGl 83 (115)
T 2uwj_G 67 WPALEPWFALCEWHLGL 83 (115)
T ss_dssp CGGGHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHhccc
Confidence 44444444444444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.45 E-value=1.8 Score=34.38 Aligned_cols=37 Identities=5% Similarity=0.029 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT 130 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~ 130 (265)
..-||++.++..+.++|+|+.|.+....+++.+|++.
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3569999999999999999999999999999999986
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.99 E-value=2 Score=33.73 Aligned_cols=37 Identities=5% Similarity=0.016 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL 131 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l 131 (265)
.-||++.++..+.++|+|+.|.+....+++.+|++.=
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 5699999999999999999999999999999999873
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.23 E-value=4.3 Score=35.59 Aligned_cols=96 Identities=10% Similarity=-0.028 Sum_probs=67.6
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH--HhhcC----C
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL--IDKYG----S 164 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el--~~~~p----~ 164 (265)
..|.+......++|.++-.|+++.|.+.++...+++|+.+.. +..|..+.. |+..=+++ +...| .
T Consensus 26 ~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~--a~~yr~lI~-------aE~~R~~vfaG~~~P~~~g~ 96 (273)
T 1zbp_A 26 ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG--ASQLRHLVK-------AAQARKDFAQGAATAKVLGE 96 (273)
T ss_dssp TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHH-------HHHHHHHHTTSCCCEECCCS
T ss_pred hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH--HHHHHHHHH-------HHHHHHHHHcCCCCCCCCCC
Confidence 357889999999999999999999999999999999998743 233333322 22222222 12222 1
Q ss_pred C-HH-HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 165 T-PM-LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 165 t-~~-lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
. +. -+...|......|+.++|..+-.+|++.
T Consensus 97 ~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 97 NEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1 11 3345677788899999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 265 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.61 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.57 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.35 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.17 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.14 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.12 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.08 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.87 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.84 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.78 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.74 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.72 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.69 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.69 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.64 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.6 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.46 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.44 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.38 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.37 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.36 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.34 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.01 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.97 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.96 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.96 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.89 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.54 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.98 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.94 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.96 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2e-14 Score=124.70 Aligned_cols=123 Identities=15% Similarity=0.007 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+...+....++.++...|++++|.+.|+++++++|+++.+....+.+.... +++.+|...|+.+....|.++..+..+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l 311 (388)
T d1w3ba_ 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK--GSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhhhccCCccchhhhHH
Confidence 445555555666666666666666666666666666654433333333323 556666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+.++..+|++++|...++++++. +++++.+++.++..+|+..++.
T Consensus 312 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777777666 4446667777777777666543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=7.5e-14 Score=120.95 Aligned_cols=194 Identities=11% Similarity=-0.030 Sum_probs=152.4
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
......|+|..++...++....+|+. .+......+++...|+++.++... .+........++..+...++.+.
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (388)
T d1w3ba_ 177 CVFNAQGEIWLAIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccccCcHHHHHHHHHHHHHhCccc-HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHH
Confidence 45567899999998875544444443 233455578889999998766544 23333344444544433333221
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...|++.+.+..++.++..+|++++|.+.++.+....|++.......+++.... |++++|...|+++.+
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ--GNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC--CCHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999987777777776544 789999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 161 KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 161 ~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
.+|+++.++..+|.++..+|++++|...+++++++ +|+++.|++.++..+|+
T Consensus 334 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999998 67799999999998884
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.4e-12 Score=110.36 Aligned_cols=202 Identities=13% Similarity=0.025 Sum_probs=102.9
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCC
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPS 85 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~ 85 (265)
+-.-...|-.|+|.+|+..+++.-..+|+. .+....+.++|..+|+++.++..+ .|.....+..++..+...+
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 444578899999999999987776667664 345566688999999998766544 2323344444444333222
Q ss_pred cCcc------------------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc--HHHHHHHHHH
Q psy3174 86 KNGS------------------------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH--TLTQLCSAWV 139 (265)
Q Consensus 86 ~~e~------------------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~--~l~~la~a~v 139 (265)
..+. ......+.........+...++++.|.+.+.++++.+|++ .......+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 2110 0000011111111122233344455555555555544442 2222222333
Q ss_pred HHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 140 HIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 140 ~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
.... |++++|...|+++....|..+.+++.+|.++..+|++++|...++++++. +++++.+++.++..+|+..++
T Consensus 182 ~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLS--GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHH--HHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence 2222 44555555555555555555555555555555555555555555555544 444555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.3e-11 Score=106.62 Aligned_cols=180 Identities=7% Similarity=-0.150 Sum_probs=135.6
Q ss_pred HHHHHHHHHcccChhHHhhhc-----CChH-HHHHHHHHHHhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcC
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEK-----LPEE-LSCIKVLAEYLSIPSKNGS---------SNFGTHLEINALKIHTYLTMY 110 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei-----~~~~-l~~~~~~A~~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~ 110 (265)
.+-....++..|+++.++... ..|. ..++..++..+...++.+. ...|++.+....++.+|..+|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 355578899999998766555 3333 6667777776655544322 235889999999999999999
Q ss_pred ChHHHHHHHHHHHccCCCcHHHH----HHHHHHHH---------HhccccHHHHHHHHHHHHhhcCC--CHHHHHHHHHH
Q psy3174 111 RNDLALKELKVMQDKDEDHTLTQ----LCSAWVHI---------ANNVDKLNEAFYTLQDLIDKYGS--TPMLVNAQVAV 175 (265)
Q Consensus 111 r~d~Aek~l~~~~~~~~d~~l~~----la~a~v~l---------~~g~~~~~eA~~~~~el~~~~p~--t~~lLn~~A~~ 175 (265)
+++.|.+.+++++...|+..... ....+.++ ....+.+.+|...|+++....|+ .+.+++.+|.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999999999877643211 11111111 11225688999999999988885 56789999999
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhc
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFR 225 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~ 225 (265)
+..+|++++|...+++++.. +++++.+++.++..+|+..++. |+|+.+..
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 244 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence 99999999999999999987 7779999999999999998765 99987543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=8.5e-11 Score=89.02 Aligned_cols=109 Identities=12% Similarity=-0.047 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
++-+...+..+...|++++|...|+++++.+|+++......|++.+.. +++++|...|++.....|.++..+..+|.|
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 80 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 80 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccc--ccccccchhhhhHHHhccchhhHHHHHHHH
Confidence 344567889999999999999999999999999987666666665555 789999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVT 206 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~ 206 (265)
+..+|+|++|...++++++. +|++..++..+
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 81 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999998 77777776654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=3.3e-10 Score=94.45 Aligned_cols=118 Identities=9% Similarity=-0.041 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
...+..+.++.+|..+|++++|...|+++++++|+++.+....|.+.... |++++|...|+++....|..+..+.++|
T Consensus 35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg 112 (259)
T d1xnfa_ 35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHH--HHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence 45678899999999999999999999999999999987765555555545 7899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
.++..+|++++|...++++++. ++....+++.+....+..
T Consensus 113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 155 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 155 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999988 444556666666666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=6.1e-10 Score=87.98 Aligned_cols=112 Identities=10% Similarity=-0.017 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
+.+...+..|...|+++.|...|+++++++|+++......+.+.+.. |++++|...|+++.+..|..+.++..+|.|+
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc--cccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 55667888999999999999999999999999986655555444444 7899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 177 IAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
+.+|+|++|...+++++.. ++++...+..+....
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 125 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 125 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988 566666666554433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=3.4e-10 Score=91.05 Aligned_cols=102 Identities=9% Similarity=-0.044 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+.+.+-..+-.|...|+++.|.+.|+++++++|+++.+....|-+.+.. |++++|...|+++.+..|..+..+..+|.
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~--~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhh--hhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 4566778899999999999999999999999999876544333333333 78999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
+++.+|+|++|...+++|++++|+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999988554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.2e-10 Score=100.84 Aligned_cols=119 Identities=2% Similarity=-0.027 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYR-NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r-~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
|++.++...++.++..+|+ +++|.+.+.++++.+|++.-+....+|+.... |++++|...|+++.+..|.....+++
T Consensus 74 P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l--~~~~eAl~~~~kal~~dp~n~~a~~~ 151 (315)
T d2h6fa1 74 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL--RDPSQELEFIADILNQDAKNYHAWQH 151 (315)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhh--ccHHHHHHHHhhhhhhhhcchHHHHH
Confidence 5555555555555555554 55555555555555555554333333333322 44555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
+|+++..+|++++|...+.++++. ++..+.|++.+...+|+.
T Consensus 152 ~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 152 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence 555555555555555555555554 333455555555555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.10 E-value=3.2e-10 Score=85.15 Aligned_cols=95 Identities=12% Similarity=-0.042 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
+..+..+.++...|++++|...++++++.+|+++.+....+.+.... +++++|...|+++.+..|+.+.++.++|+++
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALAVSH 94 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhh--hhHHHhhcccccccccccccccchHHHHHHH
Confidence 44567789999999999999999999999999986666666655444 7899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHh
Q psy3174 177 IAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al 193 (265)
..+|++++|.+.+++.+
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2e-10 Score=88.32 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=88.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHc
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN-VDKLNEAFYTLQDLIDKYGST--PMLVNAQVAVLIAQ 179 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g-~~~~~eA~~~~~el~~~~p~t--~~lLn~~A~~~~~~ 179 (265)
+-.++.+++++.|++.|++++.++|+++-+..-.||.-+..+ .+.+++|+.+|+++....|.. +..+..+|+||..+
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~ 85 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999988887788755433 367889999999999887643 44889999999999
Q ss_pred CCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHc
Q psy3174 180 DKYEEAWDLLQDTAGDSE---DTLINNMVTAGRL 210 (265)
Q Consensus 180 g~~eEAe~~l~~al~~~p---dtl~nl~~~~~~~ 210 (265)
|+|++|..+++++++.+| ..+.++..+...+
T Consensus 86 g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 86 KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 999999999999999944 4666666555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=4.4e-09 Score=92.34 Aligned_cols=167 Identities=8% Similarity=-0.016 Sum_probs=124.6
Q ss_pred HHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCc-Cc-c--------cccCCCHHHHHHHHHHHHHcCC
Q psy3174 48 YVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSK-NG-S--------SNFGTHLEINALKIHTYLTMYR 111 (265)
Q Consensus 48 ~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~-~e-~--------~~~~~~lE~~al~v~~~l~~~r 111 (265)
+...++..++.++.++... .|....++...+..+...+. .+ + ...|++.++...++.++..+|+
T Consensus 48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~ 127 (315)
T d2h6fa1 48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD 127 (315)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhcc
Confidence 3344566667777655433 34445555555554443222 22 2 3359999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC------HHHH
Q psy3174 112 NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDK------YEEA 185 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~------~eEA 185 (265)
+++|.+.+.++++.+|++..+....+|+.... +++++|...|+++.+..|.....++.+|.++...|+ +++|
T Consensus 128 ~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~--~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~a 205 (315)
T d2h6fa1 128 PSQELEFIADILNQDAKNYHAWQHRQWVIQEF--KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 205 (315)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHh
Confidence 99999999999999999986666666665545 779999999999999999999999999999888887 5789
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 186 WDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 186 e~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
...+.++++. ++..+.+++.++...| ..++.
T Consensus 206 i~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~ 239 (315)
T d2h6fa1 206 VQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYP 239 (315)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHH
Confidence 9999999988 5567788888765544 34444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=6.2e-09 Score=78.39 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=76.3
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC-----
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----- 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----- 217 (265)
|++++|+..|+++....|..+.+++.+|+|+..+|++++|...+.++++. +|..+.+++.++..+|+..+++
T Consensus 17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 96 (117)
T d1elwa_ 17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 96 (117)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999987 7779999999999999998765
Q ss_pred -----CCChhhhcHHH
Q psy3174 218 -----VSPPFLFRSDE 228 (265)
Q Consensus 218 -----p~hp~~~~~~~ 228 (265)
|++|.+.....
T Consensus 97 a~~~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 97 GLKHEANNPQLKEGLQ 112 (117)
T ss_dssp HHTTCTTCHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHH
Confidence 99887665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=5.9e-08 Score=80.28 Aligned_cols=152 Identities=9% Similarity=-0.120 Sum_probs=107.9
Q ss_pred ccHHHHHHHHhhccc---CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHH
Q psy3174 22 GNYQQCIKEGQRLKA---TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEI 98 (265)
Q Consensus 22 G~Y~~~i~~~~~~~~---~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~ 98 (265)
+.++.++..++.+.. ..++...+..+.+..+|..+|+++.++... .... ...|+++++
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~--------~~al-----------~l~p~~~~a 73 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF--------SQAL-----------AIRPDMPEV 73 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH--------HHHH-----------HHCCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHH--------HHhh-----------ccCCCCHHH
Confidence 345555554433221 234434444444567899999998777631 1111 123567889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
...++.+|..+|++++|.+.|+++++++|++.-+....+++.... |++++|...|+++.+..|.++.....++.+...
T Consensus 74 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 151 (259)
T d1xnfa_ 74 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG--GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK 151 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH--hhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999886666666665544 789999999999999999888877788888888
Q ss_pred cCCHHHHHHHHHHHhc
Q psy3174 179 QDKYEEAWDLLQDTAG 194 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~ 194 (265)
.+....+..+......
T Consensus 152 ~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 152 LDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhc
Confidence 8877766665554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=3.2e-08 Score=80.84 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC----------
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS---------- 164 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~---------- 164 (265)
+...++.++.+|..+|+++.|.+.|+++++++|+++....-.+.+.... |++++|...|++.....+.
T Consensus 35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~--g~~~~A~~~~~kAl~~~~~n~~~~~~~~~ 112 (192)
T d1hh8a_ 35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT--EKYDLAIKDLKEALIQLRGNQLIDYKILG 112 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTTTCSEEECGGGT
T ss_pred CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh--ccHHHHHHHHHHHHHhCccCchHHHHHhh
Confidence 4566777788888888888888888888888887775444444443333 6688888888877653221
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCC
Q psy3174 165 ------TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGK 212 (265)
Q Consensus 165 ------t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk 212 (265)
....+.++|.++..+|+|++|...+.+|++.+|+ ...+.+.-....+.
T Consensus 113 ~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~~~ 169 (192)
T d1hh8a_ 113 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQK 169 (192)
T ss_dssp BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTTC
T ss_pred hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhh
Confidence 1345677788888888888888888888776332 33444433333343
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.7e-08 Score=81.23 Aligned_cols=114 Identities=11% Similarity=-0.000 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
++..+.++...|+++.|.+.|.++ .++++-+..-.+.+.+ ..|++++|+..|++..+..|..+..++++|.|+.+
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~--~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~ 82 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYT--ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 82 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHH--HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 345688999999999999999864 4444422222222322 33789999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcC-------------------CHHHHHHHHHHHHHcCCCCccC
Q psy3174 179 QDKYEEAWDLLQDTAGD-------------------SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~-------------------~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+|++++|...+.+|+.. ..+++.|++.++..+|+..++.
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~ 140 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 140 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999863 2478899999999999987654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=5.9e-08 Score=77.58 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcH----------HHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHT----------LTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~----------l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~ 166 (265)
-..+-.+...|++++|...|+++++..+... ......+|.+++ ...+++++|+..++++....|..+
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~ 96 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 96 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence 3456689999999999999999998654321 111222333333 234889999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
..+..+|.|+..+|+|++|...+++++++ ||++...+..+...++
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 6677777777665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2e-08 Score=78.91 Aligned_cols=84 Identities=10% Similarity=-0.051 Sum_probs=76.8
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC---
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS--- 217 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~--- 217 (265)
..|+|++|...|+++.+..|+.+..++.+|.|++.+|++++|...+.++++. ++.++.+++.++..+|+..++.
T Consensus 22 ~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~ 101 (159)
T d1a17a_ 22 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDY 101 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4488999999999999999999999999999999999999999999999998 6679999999999999998765
Q ss_pred -------CCChhhhcHH
Q psy3174 218 -------VSPPFLFRSD 227 (265)
Q Consensus 218 -------p~hp~~~~~~ 227 (265)
|+++.+....
T Consensus 102 ~~a~~~~p~~~~~~~~l 118 (159)
T d1a17a_ 102 ETVVKVKPHDKDAKMKY 118 (159)
T ss_dssp HHHHHHSTTCHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHH
Confidence 9998876553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.4e-07 Score=79.16 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CH---HHHHHHHHHHHHcC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGS----TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SE---DTLINNMVTAGRLG 211 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~----t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~p---dtl~nl~~~~~~~G 211 (265)
.+++++|...+++.....|. .......+|.+++.+|++++|...+++++.. +| .++.+++.++..+|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 35677777776666544432 2234555666777777777777777766542 22 35566677777777
Q ss_pred CCCccC
Q psy3174 212 KGNEMS 217 (265)
Q Consensus 212 k~~ea~ 217 (265)
+..++.
T Consensus 306 ~~~~A~ 311 (366)
T d1hz4a_ 306 RKSDAQ 311 (366)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=6.6e-08 Score=73.68 Aligned_cols=103 Identities=14% Similarity=0.047 Sum_probs=83.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH-------HHHHHHH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP-------MLVNAQV 173 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~-------~lLn~~A 173 (265)
..+..+...|+++.|.+.|.++++++|+++.+....+.+.... +++++|...|+++.+..|..+ .++..+|
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc--CchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999886655555555545 789999999999887666332 3677888
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHH
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMV 205 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~ 205 (265)
.++..+++|++|..++.+++.. +|+++..+..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~ 120 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999999999999999999876 7777765543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=2e-07 Score=79.97 Aligned_cols=154 Identities=10% Similarity=0.028 Sum_probs=107.8
Q ss_pred HHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc
Q psy3174 50 CRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH 129 (265)
Q Consensus 50 ~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~ 129 (265)
+.+|-.+|+++.++. ++...+++.... ++.++...++..++.+|..+|++++|.+.|++++++.+..
T Consensus 44 a~~y~~~~~~~~A~~--------~y~kA~~~~~~~-----~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~ 110 (290)
T d1qqea_ 44 ATIYRLRKELNLAGD--------SFLKAADYQKKA-----GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (290)
T ss_dssp HHHHHHTTCTHHHHH--------HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHH--------HHHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc
Confidence 567888888887666 333333332211 2233456678888999999999999999999998863322
Q ss_pred -HHHHHHHHHHHHH----hccccHHHHHHHHHHHHhhcC---CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---
Q psy3174 130 -TLTQLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYG---ST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--- 195 (265)
Q Consensus 130 -~l~~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p---~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--- 195 (265)
.....+.++.+++ ...+++++|...|++..+.++ ++ ..+++.+|.++..+|+|++|..++++++..
T Consensus 111 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~ 190 (290)
T d1qqea_ 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence 1122233444443 223789999999999876543 22 336888999999999999999999999876
Q ss_pred C-------HHHHHHHHHHHHHcCCCCcc
Q psy3174 196 S-------EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 196 ~-------pdtl~nl~~~~~~~Gk~~ea 216 (265)
+ +..+.+.+.++...|+...+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~d~~~A 218 (290)
T d1qqea_ 191 NRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (290)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred chhhhhhHHHHHHHHHHHHHHhccHHHH
Confidence 2 23567888888888887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.69 E-value=1.5e-07 Score=74.63 Aligned_cols=113 Identities=10% Similarity=0.024 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-----------HHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcC
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDH-----------TLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-----------~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p 163 (265)
.+...+..+...|+++.|.+.|.++++..+.. .-...+.+|.+++ ...+++++|+..|+++.+..|
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 34556778899999999999999987632110 0112223333332 123789999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
..+..+..+|.+++.+|+|++|...++++++. ++++..++..|....
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 158 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 666777777666544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=3.1e-08 Score=79.17 Aligned_cols=83 Identities=11% Similarity=-0.063 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q psy3174 131 LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTA 207 (265)
Q Consensus 131 l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~ 207 (265)
+.+.+..++ ..|++++|...|+++.+..|.++.+++++|.|++.+|+|++|...+.+|+++ +++.+.|++.++
T Consensus 7 l~~~Gn~~~----~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 7 LKEQGNRLF----VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHH----HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 344444444 4489999999999999999999999999999999999999999999999998 566899999999
Q ss_pred HHcCCCCccC
Q psy3174 208 GRLGKGNEMS 217 (265)
Q Consensus 208 ~~~Gk~~ea~ 217 (265)
..+|+.++++
T Consensus 83 ~~l~~~~~A~ 92 (201)
T d2c2la1 83 LEMESYDEAI 92 (201)
T ss_dssp HHTTCHHHHH
T ss_pred HHCCCHHHHH
Confidence 9999998765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.67 E-value=4.5e-07 Score=71.93 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-------c---HHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcC
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDED-------H---TLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-------~---~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p 163 (265)
+.+--.+-.+...|++++|.+.|++++..-+. . .-...+..|.|++ ...+++.+|+..++++....|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 44556688999999999999999999873211 0 0011122233332 234889999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
..+..+..+|.|+..+|+|++|...+.+++++ ++++...+..+...++
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 5556667766655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2.6e-08 Score=76.08 Aligned_cols=85 Identities=13% Similarity=-0.010 Sum_probs=73.4
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCc
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA---QDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~---~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~~e 215 (265)
..+.+++|...|+++....|.++.+++++|+|+++ .+++.+|..++++++.. ++++++|+++++..+|+..+
T Consensus 11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~ 90 (122)
T d1nzna_ 11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHH
Confidence 44789999999999999999999999999999997 45566899999999987 24588999999999999987
Q ss_pred cC----------CCChhhhcHHH
Q psy3174 216 MS----------VSPPFLFRSDE 228 (265)
Q Consensus 216 a~----------p~hp~~~~~~~ 228 (265)
+. |+|+-+..+..
T Consensus 91 A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 91 ALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHH
Confidence 65 99987776544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.60 E-value=4.3e-08 Score=73.11 Aligned_cols=72 Identities=13% Similarity=-0.044 Sum_probs=66.8
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
..|++.+|...|+++....|.++.++..+|.|+..+|++++|+..++++++. +++++.++++++..+|+..+
T Consensus 28 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 28 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence 3488999999999999999999999999999999999999999999999998 67799999999999997654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.59 E-value=1.3e-07 Score=73.88 Aligned_cols=102 Identities=8% Similarity=0.008 Sum_probs=81.3
Q ss_pred HHHcCChHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHh------ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 106 YLTMYRNDLALKELKVMQDKDEDHTLTQ--LCSAWVHIAN------NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 106 ~l~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~v~l~~------g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
|.+++++++|.+.|+++++++|+++-+. ++.++..+.. ..+.+++|+..|+++.+..|+.+..++++|.++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 5677889999999999999999986544 4444443321 2256789999999999999999999999999999
Q ss_pred HcCC-----------HHHHHHHHHHHhcCCH---HHHHHHHHHH
Q psy3174 178 AQDK-----------YEEAWDLLQDTAGDSE---DTLINNMVTA 207 (265)
Q Consensus 178 ~~g~-----------~eEAe~~l~~al~~~p---dtl~nl~~~~ 207 (265)
.+|+ |++|...+++|++.+| ..+.++..+.
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 8875 6999999999998844 4666666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.56 E-value=1.4e-06 Score=68.00 Aligned_cols=112 Identities=13% Similarity=-0.007 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCC-----CcHHH------HHHHHHHHHH---hccccHHHHHHHHHHHHhhcCC
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDE-----DHTLT------QLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~-----d~~l~------~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~ 164 (265)
+...+-.+...|++..|.+.|.++++.-+ ++... .....|.|++ ...+++++|...++++....|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 44466788999999999999999987422 11110 0111222222 1237899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
....+..+|.|+..+|+|++|...+++++++ |+++..++..+...+
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 555666776665544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=5.3e-07 Score=83.59 Aligned_cols=122 Identities=7% Similarity=-0.182 Sum_probs=81.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.+++.+.....+.++...|+.+.|.+.+++++..++...+..++..+. ..+++++|...|+++.+..|++...+|.
T Consensus 116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~----~~~~~~~A~~~y~~A~~l~P~~~~~~~~ 191 (497)
T d1ya0a1 116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIAR----YRNQTSQAESYYRHAAQLVPSNGQPYNQ 191 (497)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTBSHHHHH
T ss_pred ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHCCCchHHHHH
Confidence 366777788889999999999999999999988776666555544333 2378999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+|+++..+|++.+|...+.+++.. +|.+..||+.+.....+..+..
T Consensus 192 Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~ 240 (497)
T d1ya0a1 192 LAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999998 8889999999998877765543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.46 E-value=7.1e-07 Score=77.23 Aligned_cols=125 Identities=6% Similarity=-0.104 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHHHH----------cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 93 GTHLEINALKIHTYLT----------MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~----------~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
|++.++...+..++.. .|++++|...++++++.+|++.-.-...+|+-...+.+++.+|...++++.+..
T Consensus 60 P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 139 (334)
T d1dcea1 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD 139 (334)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC
Confidence 5555555444444333 344788888888888888888855555555544555667889999999998888
Q ss_pred CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 163 GSTPML-VNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 163 p~t~~l-Ln~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|..... ....+.++..+|++++|...+.++++. +++.+.+++.++..+|+..++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence 876654 456778888889999999999888888 6668888899999999887765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.44 E-value=2e-07 Score=73.06 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=70.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcH-------HHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcC-------C-
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHT-------LTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYG-------S- 164 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~-------l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p-------~- 164 (265)
+..++..|++++|.+.|++++++.++.+ ....+.+|.+++ ...|++++|...+++....+| .
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 7788899999999999999999765421 223344455443 233789999999999765433 1
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 165 ---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 165 ---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
....++++|.++..+|++++|...+++|+++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2336889999999999999999999999987
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.38 E-value=2.3e-07 Score=80.42 Aligned_cols=115 Identities=7% Similarity=-0.144 Sum_probs=69.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc------------------------------cCCCcHHHHHHHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQD------------------------------KDEDHTLTQLCSAWVH 140 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~------------------------------~~~d~~l~~la~a~v~ 140 (265)
..|.+.++...++.++..+|+++.|.+.++++.+ .+|+........+.+.
T Consensus 173 ~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~ 252 (334)
T d1dcea1 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKS 252 (334)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3477777777777777777776655444443333 3333322221222222
Q ss_pred HHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHH
Q psy3174 141 IANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTA 207 (265)
Q Consensus 141 l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~ 207 (265)
... +++.+|...|.+....+|+++..+..+|.++..+|++++|..+++++++.+|+ .+.++..+.
T Consensus 253 ~~~--~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 253 TVL--QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp HHH--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHH--hhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 222 56777777777777777777777777777777777777777777777777663 444554433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.37 E-value=4.1e-07 Score=71.22 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhc-----cccHHHHHHHHHHHHhhcCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3174 131 LTQLCSAWVHIANN-----VDKLNEAFYTLQDLIDKYGST------------PMLVNAQVAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 131 l~~la~a~v~l~~g-----~~~~~eA~~~~~el~~~~p~t------------~~lLn~~A~~~~~~g~~eEAe~~l~~al 193 (265)
+..++.+|..+..| .|+|++|...|++..+..|.. ...++++|.|+..+|+|++|...+++++
T Consensus 3 l~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 3 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 33455555554322 278999999999998876632 3578999999999999999999999999
Q ss_pred cCC--------------HHHHHHHHHHHHHcCCCCccC
Q psy3174 194 GDS--------------EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 194 ~~~--------------pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
... ..++.|++.++..+|+.++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~ 120 (156)
T d2hr2a1 83 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 120 (156)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccccccccccccchhHHHHhhhHHHHHHHHHHHHHH
Confidence 751 125789999999999987654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=2.7e-06 Score=71.06 Aligned_cols=120 Identities=16% Similarity=0.047 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHH-----HHHHHHHHHhccccHHHHHHHHHHHHhhc---CC--
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQ-----LCSAWVHIANNVDKLNEAFYTLQDLIDKY---GS-- 164 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~-----la~a~v~l~~g~~~~~eA~~~~~el~~~~---p~-- 164 (265)
..|..++++++++..|+++.|.+.++++++..|++.-.. ...+++.... |++++|...|+++.+.. ++
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~ 88 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQTEQMARQHDVWH 88 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhhcchH
Confidence 468899999999999999999999999999888763222 2233343334 78999999999987543 33
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------C---HHHHHHHHHHHHHcCCCCcc
Q psy3174 165 -TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------S---EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 165 -t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~---pdtl~nl~~~~~~~Gk~~ea 216 (265)
....+..++.++..+|++.+|...+.+++.. . ..+..+++.++...|+...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a 152 (366)
T d1hz4a_ 89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 152 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhh
Confidence 2346788999999999999999999999875 1 12456788899999987543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1e-06 Score=63.56 Aligned_cols=67 Identities=7% Similarity=-0.044 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHHhhcC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 146 DKLNEAFYTLQDLIDKYG-------STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p-------~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
|+|++|...|+++....| ....+++.+|+|+.++|++++|...++++++. ||+++.|+..+-..++|
T Consensus 19 g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l~k 95 (95)
T d1tjca_ 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95 (95)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 455555555555544322 22457889999999999999999999999988 67788898887666553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=7.2e-07 Score=67.67 Aligned_cols=74 Identities=9% Similarity=0.071 Sum_probs=62.0
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH---H-------HHHHHHHHHHHcCCC
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE---D-------TLINNMVTAGRLGKG 213 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p---d-------tl~nl~~~~~~~Gk~ 213 (265)
..++|++|...|+++.+.+|+++.++.++|.|++++|+|++|...+.++++.+| . ++.+++.+...+|..
T Consensus 16 ~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~ 95 (128)
T d1elra_ 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY 95 (128)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 348899999999999999999999999999999999999999999999999833 3 445666666666665
Q ss_pred CccC
Q psy3174 214 NEMS 217 (265)
Q Consensus 214 ~ea~ 217 (265)
.+++
T Consensus 96 ~~A~ 99 (128)
T d1elra_ 96 KDAI 99 (128)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=1.1e-05 Score=68.71 Aligned_cols=172 Identities=7% Similarity=-0.041 Sum_probs=107.9
Q ss_pred hHHHHHhh-hhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCC
Q psy3174 12 LFDVRNSY-YLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPS 85 (265)
Q Consensus 12 lf~vr~~f-y~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~ 85 (265)
+...-+.| -.|+|++|++.+.+... .++......-.-+.++|..+|+++.++. .++..+++....
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~--------~~~~a~~~~~~~- 110 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD--------SLENAIQIFTHR- 110 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH--------HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHH--------HHHHhhHHhhhc-
Confidence 33343433 46788888887644321 2232232333344688888888887666 333333332221
Q ss_pred cCcccccCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHH---hccccHHHHHHHHHHH
Q psy3174 86 KNGSSNFGTHLEINALKIHTYLT-MYRNDLALKELKVMQDKDE---DHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDL 158 (265)
Q Consensus 86 ~~e~~~~~~~lE~~al~v~~~l~-~~r~d~Aek~l~~~~~~~~---d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el 158 (265)
++......+...++.+|.. .|+++.|...|+++.++.+ +.+ ..+.+|.+++ ...|+|++|..+|+++
T Consensus 111 ----~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~--~~~~~~~~la~~~~~~g~y~~A~~~~~~~ 184 (290)
T d1qqea_ 111 ----GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA--LSNKCFIKCADLKALDGQYIEASDIYSKL 184 (290)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchh--hhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 2222334555666667755 6999999999999987522 211 1122222222 2347899999999999
Q ss_pred HhhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 159 IDKYGSTP-------MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 159 ~~~~p~t~-------~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
....+.++ ..+...+.|+...|+++.|...+.++.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 98776432 35678899999999999999999999998653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=5.4e-06 Score=65.69 Aligned_cols=88 Identities=9% Similarity=-0.020 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
+...++.||+++|+++.|.+.+.++++++|+++-+....|++.... |++++|...|+++.+..|.++.+...++.+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~--g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV--NDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHh--hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445788999999999999999999999999997777777776656 78999999999999999999999999999999
Q ss_pred HcCCHHHHHH
Q psy3174 178 AQDKYEEAWD 187 (265)
Q Consensus 178 ~~g~~eEAe~ 187 (265)
++++..+.+.
T Consensus 142 ~~~~~~~~e~ 151 (170)
T d1p5qa1 142 RIRRQLAREK 151 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=7.8e-06 Score=64.26 Aligned_cols=93 Identities=11% Similarity=-0.077 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|....++..++.+|..+|+++.|...+.++++++|+++-+....|.+.... |++++|...|+++.+..|..+.+...+
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l--~~~~~A~~~~~~al~l~p~n~~~~~~l 151 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL--KEYDQALADLKKAQEIAPEDKAIQAEL 151 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 445667778899999999999999999999999999986655555554444 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWD 187 (265)
Q Consensus 173 A~~~~~~g~~eEAe~ 187 (265)
+.|........+++.
T Consensus 152 ~~~~~~l~~~~~~~k 166 (169)
T d1ihga1 152 LKVKQKIKAQKDKEK 166 (169)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888887777653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=8.5e-06 Score=58.46 Aligned_cols=82 Identities=10% Similarity=-0.113 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---------HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH---------TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---------~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t 165 (265)
+.+-.+.++.++..+|+++.|.+-|++++++.+++ ++.+|+.++. ..|++++|+..|+++.+..|..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~----~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY----QQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH----hcCChHHHHHHHHHHHHhCcCC
Confidence 45667889999999999999999999998864432 3334444443 3388999999999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q psy3174 166 PMLVNAQVAVLIAQD 180 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g 180 (265)
+.++++++.+...++
T Consensus 80 ~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 80 QRANGNLKYFEYIMA 94 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999887766554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.01 E-value=2e-05 Score=61.17 Aligned_cols=82 Identities=11% Similarity=-0.065 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
.+...++.+|..+|+++.|.+.+.++++++|+++-+....|.+.... |++++|+..|+++.+..|+++.+.+.++.|.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~l--g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF--GFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35567899999999999999999999999999987766666666656 7899999999999999999999998888876
Q ss_pred HHcC
Q psy3174 177 IAQD 180 (265)
Q Consensus 177 ~~~g 180 (265)
-++.
T Consensus 146 ~kl~ 149 (153)
T d2fbna1 146 NKLK 149 (153)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.98 E-value=3.2e-05 Score=60.74 Aligned_cols=87 Identities=7% Similarity=-0.070 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
...++.||..+|+++.|...+.++++++|+++-+..-.+.+.... |++++|...|+++.+..|+++.+...++.+...
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l--~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM--NEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445788999999999999999999999999986655544444434 789999999999999999999999999999988
Q ss_pred cCCHHHHHH
Q psy3174 179 QDKYEEAWD 187 (265)
Q Consensus 179 ~g~~eEAe~ 187 (265)
.+.+.+...
T Consensus 145 ~~~~~e~~k 153 (168)
T d1kt1a1 145 AKEHNERDR 153 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHHHHH
Confidence 887766443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.97 E-value=5.2e-05 Score=64.73 Aligned_cols=122 Identities=3% Similarity=0.009 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|.+..+....+.++..+|+++.|+..|.++++..|.+.. .+-..++.+....+++++|..+|+++...+|.+..++...
T Consensus 96 p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~ 174 (308)
T d2onda1 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 455566666677777777777777777777776665431 1112233333444667777777777777777666666555
Q ss_pred HHHHH-HcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 173 VAVLI-AQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 173 A~~~~-~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
|.... ..|+.+.|..++++++.. +|++....+......|+...
T Consensus 175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~ 221 (308)
T d2onda1 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHH
Confidence 55433 356777777777777765 56666666666666666544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.96 E-value=7.9e-05 Score=59.68 Aligned_cols=100 Identities=11% Similarity=-0.013 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH-----------------HHHHHHHHHH---hccccHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT-----------------QLCSAWVHIA---NNVDKLNEAFYT 154 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~-----------------~la~a~v~l~---~g~~~~~eA~~~ 154 (265)
.+|.....+..+...||++.|...|.+++++.+...+. ....+|.+++ ...|++++|...
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~ 89 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 89 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 46777888899999999999999999999975433211 1112333333 344889999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 155 LQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 155 ~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
++++...+|.+..++..++.++.++|++.+|...++++..
T Consensus 90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998843
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.96 E-value=1.9e-05 Score=61.06 Aligned_cols=95 Identities=11% Similarity=-0.041 Sum_probs=74.4
Q ss_pred cCCCHHHHHHHHHHHHH----------cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc---------cccHHHHH
Q psy3174 92 FGTHLEINALKIHTYLT----------MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN---------VDKLNEAF 152 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~----------~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g---------~~~~~eA~ 152 (265)
.|++.+++..++.++.. .++++.|.+.|+++++++|++.-+....+.+....| .+++++|.
T Consensus 27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~ 106 (145)
T d1zu2a1 27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 106 (145)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhh
Confidence 47888888888888874 455689999999999999998755444433332222 25689999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3174 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 153 ~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe 186 (265)
..|+++.+..|+....+.+++.+.-..+.+.|+.
T Consensus 107 ~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 107 QFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987777777653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=0.00081 Score=56.96 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
.......+......|.++.|++.|+++++..|.+.-..+..+.... ...+..+.|..+|+.+...+|+++.++...+..
T Consensus 134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~-~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~ 212 (308)
T d2onda1 134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY-YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 212 (308)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH-HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4456777888999999999999999999998887744433333311 234678999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHH----HHHHHHHHHHHcCCC
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SED----TLINNMVTAGRLGKG 213 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pd----tl~nl~~~~~~~Gk~ 213 (265)
...+|++++|..++++|+.. +|+ +....+..-...|..
T Consensus 213 ~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999987 554 333445555556653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.79 E-value=0.0025 Score=52.01 Aligned_cols=197 Identities=13% Similarity=-0.002 Sum_probs=120.4
Q ss_pred CcchhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHc----ccChhHHhhhc------CChHHHHHHH
Q psy3174 8 EVDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLA----QKKYKVVLEEK------LPEELSCIKV 76 (265)
Q Consensus 8 ~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Rayla----lg~~~~~l~ei------~~~~l~~~~~ 76 (265)
|++++|.+ ...|-.|+|++|++.+++...... .+..+.+.+.|.. ...+...+.-. .++. +...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~--a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSN--GCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH--HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccc--hhhc
Confidence 46778888 778888999999999876543322 2345555666654 12222222111 2222 2222
Q ss_pred HHHHhcC----CCcCcc-------cccCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q psy3174 77 LAEYLSI----PSKNGS-------SNFGTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHI 141 (265)
Q Consensus 77 ~A~~l~~----~~~~e~-------~~~~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l 141 (265)
++.+... ....+. ....+..+....++..+.. ......|.+.+......++......|+..+..-
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccC
Confidence 2222221 111110 0114566666666666664 444677777777776655555555555554432
Q ss_pred HhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC
Q psy3174 142 ANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk 212 (265)
.........+...++...+. ..+..+..+|.++.. ..++++|..++.++.+. +|....||+.++. .|.
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~--g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~-~G~ 228 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY-NGE 228 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTS
T ss_pred CCcccccccchhhhhccccc--cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHH-cCC
Confidence 22225566777777777653 356777889999887 77899999999999998 9999999999887 454
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=9.7e-06 Score=74.79 Aligned_cols=135 Identities=10% Similarity=-0.046 Sum_probs=82.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q psy3174 102 KIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDK 181 (265)
Q Consensus 102 ~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~ 181 (265)
...++...+.++.|...+++...+++++.......+.+. .+.+++.+|...+++.....| ...+..+|.++..+|+
T Consensus 92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~ 167 (497)
T d1ya0a1 92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIIS--NKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQ 167 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHH--HhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHccc
Confidence 455666677888888888888888887774433333332 244788999998888776554 3578889999999999
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC--------CCChhhhcHHHHHHHHHHHHhhc
Q psy3174 182 YEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS--------VSPPFLFRSDETTATLDACGLQS 240 (265)
Q Consensus 182 ~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~--------p~hp~~~~~~~~~~~FD~~~~~~ 240 (265)
|++|...+.+|++.+|+ ...||++++...|+..++. -++|+..........|++...+.
T Consensus 168 ~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~ 237 (497)
T d1ya0a1 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESR 237 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999555 8899999999999988765 44555556666677888766554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.55 E-value=2.8e-05 Score=66.44 Aligned_cols=38 Identities=8% Similarity=-0.177 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT 130 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~ 130 (265)
|++.++...++++|+..|+++.|.+.|+++.+.+|++.
T Consensus 27 P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~ 64 (264)
T d1zbpa1 27 PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 64 (264)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence 44444444444444444444444444444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.54 E-value=2.3e-05 Score=66.99 Aligned_cols=113 Identities=8% Similarity=-0.103 Sum_probs=89.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY 182 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~ 182 (265)
.+-++..|+++.|...|+++++.+|++.-.....+-+.+.. |++++|...|+.+.+..|+.......++.++...+..
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~--G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCID--GDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence 45678899999999999999999999987766666665555 7899999999999999999888888888888888888
Q ss_pred HHHHHHHHHHhcC-CHH---HHHHHHHHHHHcCCCCccC
Q psy3174 183 EEAWDLLQDTAGD-SED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 183 eEAe~~l~~al~~-~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
+++.....+.... +|+ .+...+.+....|+..++.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~ 119 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 119 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHH
Confidence 8876655444333 443 4456677778888876543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.02 E-value=0.012 Score=47.69 Aligned_cols=113 Identities=8% Similarity=-0.149 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+|+.++-++..+...+++++|.+.|+++.+.++......|+..+..-......+..|...++...... .+.....+|.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~ 78 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN 78 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcccc
Confidence 47788888999999999999999999998776554444444443321111257888888888876653 3455566666
Q ss_pred HHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 175 VLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 175 ~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
++.. ..+.++|...++++.+. ++....+++.....
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~ 118 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD 118 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccC
Confidence 6654 46788888888888877 66677777665554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.98 E-value=0.0011 Score=52.63 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=62.6
Q ss_pred ccccHHHHHHHHHHHHhhcCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHH
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGST----------------------PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SED 198 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t----------------------~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pd 198 (265)
.+|++++|...|.+....++.. ...+..++.++..+|++++|...++++++. +.+
T Consensus 23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~ 102 (179)
T d2ff4a2 23 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP 102 (179)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH
Confidence 4588999999999988765522 135788999999999999999999999998 666
Q ss_pred HHHHHHHHHHHcCCCCccC
Q psy3174 199 TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 199 tl~nl~~~~~~~Gk~~ea~ 217 (265)
...+++.++..+|+..+++
T Consensus 103 ~~~~l~~al~~~Gr~~eAl 121 (179)
T d2ff4a2 103 LWTQLITAYYLSDRQSDAL 121 (179)
T ss_dssp HHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHH
Confidence 9999999999999987643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.00097 Score=50.39 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred CcHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 128 DHTLTQLCSAWVHIAN-NVDKLNEAFYTLQDLIDKYGSTP-MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 128 d~~l~~la~a~v~l~~-g~~~~~eA~~~~~el~~~~p~t~-~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.++-++-.-||.-+.. ..+..++++.+++++....|... ..|..+|++|.++|+|++|..++..+|+.+|+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555677778885543 22678899999999998888665 68999999999999999999999999998665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.71 E-value=0.0077 Score=44.63 Aligned_cols=90 Identities=8% Similarity=-0.053 Sum_probs=68.6
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----cCCHHHH
Q psy3174 111 RNDLALKELKVMQDKDEDHTLTQLCSAWVHIAN-NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA----QDKYEEA 185 (265)
Q Consensus 111 r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~-g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~----~g~~eEA 185 (265)
+++.|.+.|+++.+.++... +.++.. ...++++|+..|++..+. ..+.....+|.++.. ..++++|
T Consensus 8 d~~~A~~~~~kaa~~g~~~a-------~~~l~~~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFG-------CLSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTH-------HHHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCChhh-------hhhhccccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHH
Confidence 47788899999887765433 223332 236788999999988775 356777888988886 5678999
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 186 WDLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 186 e~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
..+++++.+. +|+...+|+.++.+
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~ 103 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYA 103 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHc
Confidence 9999999988 99999999887655
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.93 E-value=0.036 Score=40.76 Aligned_cols=90 Identities=10% Similarity=-0.085 Sum_probs=65.4
Q ss_pred cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----cCCHHH
Q psy3174 109 MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA----QDKYEE 184 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~----~g~~eE 184 (265)
..++++|.+.|+++.+.+.......|+..+.+-.....++.+|+..|++..+.. .+.....+|.++.. ..++++
T Consensus 36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHH
Confidence 346788999999997766544444444333321111256899999999998763 46778889999987 568999
Q ss_pred HHHHHHHHhcC-CHHHH
Q psy3174 185 AWDLLQDTAGD-SEDTL 200 (265)
Q Consensus 185 Ae~~l~~al~~-~pdtl 200 (265)
|..++++|.+. +++..
T Consensus 114 A~~~~~~Aa~~G~~~A~ 130 (133)
T d1klxa_ 114 AVKTFEKACRLGSEDAC 130 (133)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHH
Confidence 99999999988 77753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.96 E-value=0.5 Score=34.78 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 95 HLEINALKIHTYLTMYR---NDLALKELKVMQDKDEDH---TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r---~d~Aek~l~~~~~~~~d~---~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
+.+..+..+.++.+... .+.|.+++..+...+|++ .+..||.+|..+ |.|++|..+++.+.+..|.....
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yykl----gdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL----GEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHccCCCcHHH
Confidence 35666666666665433 346666666666655543 334555555543 55777777777777777766666
Q ss_pred HHHHHHHH
Q psy3174 169 VNAQVAVL 176 (265)
Q Consensus 169 Ln~~A~~~ 176 (265)
++..-.+.
T Consensus 110 ~~L~~~Ie 117 (124)
T d2pqrb1 110 GALKSMVE 117 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
|