Psyllid ID: psy3229

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MYVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcc
Coil and Loop (DISEMBL)
myvewplslifNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNehfmmpmkKESIVELYCsnrsvwlchksvkteSKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE
Flexible Loop (DISEMBL)
MYVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHksvktesksARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE
Low Complexity Region (SEG)
MYVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE
Disordered region (IsUnstruct)
*YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKT******ESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVK*******ESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFI*****
Disordered Region (DISOPRED)
MYVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKT**K*ARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL**
Disordered Region (DISEMBL)
MYVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSV*********SYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSV*********SYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE
Disordered Region (DISPRO)
*YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMPMKKESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q5R5J6	902	Gamma-tubulin complex com	yes	N/A	0.488	0.094	0.529	1e-21
Q9BSJ2	902	Gamma-tubulin complex com	yes	N/A	0.488	0.094	0.529	3e-21
Q921G8	905	Gamma-tubulin complex com	yes	N/A	0.488	0.093	0.517	7e-21
Q9XYP7	852	Gamma-tubulin complex com	yes	N/A	0.528	0.107	0.5	6e-19
Q95ZG3	1335	Spindle pole body compone	yes	N/A	0.528	0.068	0.457	3e-15
Q9UGJ1	667	Gamma-tubulin complex com	no	N/A	0.833	0.217	0.265	1e-08
Q9D4F8	667	Gamma-tubulin complex com	no	N/A	0.833	0.217	0.265	2e-08
Q9Y705	784	Spindle pole body compone	yes	N/A	0.528	0.117	0.412	1e-05
Q9VKU7	650	Gamma-tubulin complex com	no	N/A	0.477	0.127	0.297	1e-05
Q9SC88	739	Gamma-tubulin complex com	N/A	N/A	0.494	0.116	0.287	2e-05

>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 63/85 (74%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WPLSLI N+K +  YQMLFRH+  CKHVERQLC+VW+ +K+ K  S  + + +  +F 
Sbjct: 622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLPSAQWFAGAFT 681

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNY 87
           LRQ+ML  +QN++YYMM EV+E  +
Sbjct: 682 LRQRMLNFVQNIQYYMMFEVMEPTW 706

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Pongo abelii (taxid: 9601)

>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 63/85 (74%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WPLSLI N+K +  YQMLFRH+  CKHVERQLC+VW+ +K+ K  S  + + +  +F 
Sbjct: 622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHSAQWFAGAFT 681

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNY 87
           LRQ+ML  +QN++YYMM EV+E  +
Sbjct: 682 LRQRMLNFVQNIQYYMMFEVMEPTW 706

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Homo sapiens (taxid: 9606)

>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 63/85 (74%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WPLSLI N+K +  YQMLFRH+  CKHVERQLC+VW+ +K+ K  +  + + +  +F 
Sbjct: 622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFT 681

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNY 87
           LRQ+ML  +QN++YYMM EV+E  +
Sbjct: 682 LRQRMLNFVQNIQYYMMFEVMEPTW 706

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Mus musculus (taxid: 10090)

>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 58/92 (63%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WP SL+ N   I  YQMLFR L  CKHVERQLC +W  +   +     A   Y  +F 
Sbjct: 605 VKWPCSLVLNHISISKYQMLFRQLFYCKHVERQLCKIWKENSIARQFEPQAASLYRAAFT 664

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL 94
           LRQ+M+  IQNLEYYMM E+IE N+  FI+ +
Sbjct: 665 LRQRMMNAIQNLEYYMMIEIIEPNWHIFIEKM 696

Drosophila melanogaster (taxid: 7227)

>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 3    VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
            V WPLSLI ++K +  YQ++FRHL LCKHVE+ L + W  H+  ++       S L SF 
Sbjct: 926  VGWPLSLIISRKSLIKYQIIFRHLFLCKHVEKVLVDTWSQHQFRRSSYNKPGLSTLLSFT 985

Query: 63   --LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL 94
              LR +M+  +QNLEYYMM EV+E N+     S+
Sbjct: 986  HLLRHRMIHFLQNLEYYMMLEVLEPNWNKMKNSI 1019

May be involved in microtubule nucleation.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 28/173 (16%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WPL ++F   ++  Y ++F++LL  + V+ +L + W      K   KS +   +K + 
Sbjct: 459 VQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRK-HLKSNQTDAIK-WR 516

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN------------EHFMMPMKKESIVEL 110
           LR  M F + NL+YY+  +V+ES ++  +  +N            +HF+  +  +S + L
Sbjct: 517 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILL 576

Query: 111 ----YCSNRSVWLCHK---------SVKTESKSARESYL-KSFALRQQMLFCI 149
               +C N  + LCH              E  +A+ S L K F+ +  +LF I
Sbjct: 577 KPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKI 629

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Homo sapiens (taxid: 9606)

>sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 28/173 (16%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WPL ++F   ++  Y ++F++LL  + V+ +L + W      K   KS +   +K + 
Sbjct: 459 VQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRK-HLKSNQTDAVK-WR 516

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN------------EHFMMPMKKESIVEL 110
           LR  M F + NL+YY+  +V+ES ++  +  +N            +HF+  +  +S + L
Sbjct: 517 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILL 576

Query: 111 ----YCSNRSVWLCHK---------SVKTESKSARESYL-KSFALRQQMLFCI 149
               +C N  + LCH              E  +A+ S L K F+ +  +LF I
Sbjct: 577 KPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKI 629

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Mus musculus (taxid: 10090)

>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 5/97 (5%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCH---KSVKTESKSARESYLK 59
           V +PLSLI ++K I  YQ+LFR+ LL +HVE QL N W+ H    + +  S +A+    K
Sbjct: 572 VPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNSAWRLNSSNAKIEQWK 631

Query: 60  --SFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL 94
             S+ LR +ML  +Q + YY   EVIE+++  F+  L
Sbjct: 632 RNSWLLRTRMLSFVQKIIYYTTSEVIETHWGKFMGEL 668

Component of the gamma tubule complex that is required for the regulation of both interphase microtubules and mitotic bipolar spindles. Required for correct septation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VKU7|GCP4_DROME Gamma-tubulin complex component 4 homolog OS=Drosophila melanogaster GN=Grip75 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 4   EWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFAL 63
           EWPL+L+F+   I  Y  +FR LL+ +  + ++  VW   ++ + +S        K   L
Sbjct: 434 EWPLNLLFSPTTIERYNNIFRFLLIIRTYQYEIQRVW-AKQTWRAKSAKDVPPNNKIITL 492

Query: 64  RQQMLFCIQNLEYYMMEEVIESNY 87
           R  ++F + N++YY+  +V+ES +
Sbjct: 493 RNYLMFFLNNMQYYIQVDVLESQF 516

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Drosophila melanogaster (taxid: 7227)

>sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 15/101 (14%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVW---------LCHKSVKTESKSA 53
           +EWPL L F Q+++  Y  +F++LL  K  + +L  +W         +  K+ K++   +
Sbjct: 504 IEWPLHLFFTQEVLSRYLKVFQYLLRLKRTQMELEKLWASVMHQYHSIFAKNKKSDQDKS 563

Query: 54  -----RESYLKS-FALRQQMLFCIQNLEYYMMEEVIESNYT 88
                R+   +S + +R+ M F I+NL++Y+  +VIES + 
Sbjct: 564 PITQQRDQRFRSMWRVREHMAFLIRNLQFYIQVDVIESQWN 604

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.

Medicago truncatula (taxid: 3880)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
307198927	786	Gamma-tubulin complex component 2 [Harpe	0.540	0.119	0.563	2e-24
380020306	844	PREDICTED: gamma-tubulin complex compone	0.540	0.111	0.563	4e-24
328782138	844	PREDICTED: gamma-tubulin complex compone	0.540	0.111	0.563	4e-24
345487241	843	PREDICTED: gamma-tubulin complex compone	0.540	0.111	0.553	5e-24
307179448	843	Gamma-tubulin complex component 2 [Campo	0.540	0.111	0.563	6e-24
340715012	844	PREDICTED: LOW QUALITY PROTEIN: gamma-tu	0.540	0.111	0.553	1e-23
332023998	844	Gamma-tubulin complex component 2 [Acrom	0.540	0.111	0.553	2e-23
383855552	844	PREDICTED: gamma-tubulin complex compone	0.540	0.111	0.542	3e-23
357626953	715	hypothetical protein KGM_17361 [Danaus p	0.557	0.135	0.565	8e-23
189236273	847	PREDICTED: similar to tubulin, gamma com	0.540	0.110	0.521	3e-21

>gi|307198927|gb|EFN79679.1| Gamma-tubulin complex component 2 [Harpegnathos saltator]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 70/94 (74%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WP+SLI N+K I CYQMLFRHL  CKHVER LC VW+ +K  KT +     +Y ++F+
Sbjct: 594 VKWPVSLIINRKAIACYQMLFRHLFFCKHVERLLCRVWISNKIAKTFTHEVAMAYRQAFS 653

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LRQ+ML CIQ+LEYYMM EV+E N+  FI  +++
Sbjct: 654 LRQRMLDCIQHLEYYMMVEVVEPNWLKFINKMSK 687

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020306|ref|XP_003694030.1| PREDICTED: gamma-tubulin complex component 2-like [Apis florea]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 71/94 (75%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WP+SLI N+K I CYQMLFRHL  CK++ER+LC VW+ +K  KT + +   SY ++F+
Sbjct: 597 VKWPVSLILNRKAIACYQMLFRHLFYCKYIERRLCRVWVSNKIAKTFTHNVAMSYRQAFS 656

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LRQ+ML CIQ+L YYMM EVIE N+  FI  +N+
Sbjct: 657 LRQRMLDCIQHLAYYMMVEVIEPNWLTFINKMNK 690

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782138|ref|XP_396275.3| PREDICTED: gamma-tubulin complex component 2 [Apis mellifera]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 71/94 (75%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WP+SLI N+K I CYQMLFRHL  CK++ER+LC VW+ +K  KT + +   SY ++F+
Sbjct: 597 VKWPVSLILNRKAIACYQMLFRHLFYCKYIERRLCRVWVSNKIAKTFTHNVAMSYRQAFS 656

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LRQ+ML CIQ+L YYMM EVIE N+  FI  +N+
Sbjct: 657 LRQRMLDCIQHLAYYMMVEVIEPNWLTFINKMNK 690

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487241|ref|XP_001601880.2| PREDICTED: gamma-tubulin complex component 2-like [Nasonia vitripennis]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 71/94 (75%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WP+SL+ N+K I CYQMLFRHL  CKHVER LC VW+ +K  KT +  A  +Y ++F+
Sbjct: 597 VKWPVSLVINRKAIACYQMLFRHLFYCKHVERLLCRVWISNKIAKTFTHEAAMAYRQAFS 656

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           +RQ+ML CIQ+LEYYMM EVIE N+  F+  +++
Sbjct: 657 VRQRMLDCIQHLEYYMMVEVIEPNWLTFLNKMSK 690

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179448|gb|EFN67772.1| Gamma-tubulin complex component 2 [Camponotus floridanus]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 70/94 (74%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WP+SLI N+K I CYQMLFRHL  CK+VER LC VW+ +K  KT +     +Y ++F+
Sbjct: 595 VKWPVSLIINRKAIACYQMLFRHLFYCKYVERLLCRVWISNKIAKTFTHEVAIAYRQAFS 654

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LRQ+ML CIQ+LEYYMM EV+E N+  FI  +N+
Sbjct: 655 LRQRMLDCIQHLEYYMMVEVVEPNWLKFINKMNK 688

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715012|ref|XP_003396015.1| PREDICTED: LOW QUALITY PROTEIN: gamma-tubulin complex component 2-like [Bombus terrestris] gi|350397420|ref|XP_003484875.1| PREDICTED: gamma-tubulin complex component 2-like [Bombus impatiens]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 72/94 (76%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WP+SLI N+K I CYQMLFRHL  CK++ER+LC VW+ +K  KT + +A  SY ++F+
Sbjct: 597 VKWPVSLILNRKAIACYQMLFRHLFYCKYIERRLCRVWVSNKIAKTFTHNAAMSYRQAFS 656

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LRQ+ML CIQ+L YYMM EVIE N+  F+  +++
Sbjct: 657 LRQRMLDCIQHLAYYMMVEVIEPNWLTFLSKMSK 690

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023998|gb|EGI64216.1| Gamma-tubulin complex component 2 [Acromyrmex echinatior]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 70/94 (74%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WP+SLI N+K I CYQMLFRHL  CK+VER LC VW+ +K  KT +     +Y ++F+
Sbjct: 596 VKWPVSLIINRKAIACYQMLFRHLFYCKYVERLLCRVWISNKIAKTFTHEVAMAYRQAFS 655

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LRQ+ML CIQ+LEYYMM EV+E N+  FI  +++
Sbjct: 656 LRQRMLDCIQHLEYYMMVEVVEPNWLKFINKMSK 689

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855552|ref|XP_003703274.1| PREDICTED: gamma-tubulin complex component 2-like [Megachile rotundata]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 71/94 (75%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WP+SLI N+K I CYQMLFRHL  CK++ER+LC VW+ +K  KT + +   SY ++F+
Sbjct: 597 VKWPVSLILNRKAIACYQMLFRHLFYCKYIERRLCRVWVSNKIAKTFTHNVAMSYRQAFS 656

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LRQ+ML CIQ+L YYMM EVIE N+  F+  +++
Sbjct: 657 LRQRMLDCIQHLAYYMMVEVIEPNWLTFLNKMSK 690

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626953|gb|EHJ76832.1| hypothetical protein KGM_17361 [Danaus plexippus]

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 2/99 (2%)

Query: 1   MYVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKS 60
           M V+WP+SLI N K I CYQM+FRHL  CKHVER LC VWL +K VK  S++    Y  S
Sbjct: 594 MEVKWPVSLILNHKAIACYQMIFRHLFYCKHVERLLCRVWLYNKVVKRFSEA--RLYADS 651

Query: 61  FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFM 99
           FALRQ+ML CIQ+L+YYM  EVIE ++   I+SL+   +
Sbjct: 652 FALRQRMLSCIQHLQYYMCVEVIEPSWCQLIQSLDNDLL 690

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236273|ref|XP_974623.2| PREDICTED: similar to tubulin, gamma complex associated protein 2 [Tribolium castaneum]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 67/94 (71%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V WPLSLI N+K + CYQM+FRHL  CK+VER +C VW C+K  K       + Y  +FA
Sbjct: 598 VHWPLSLILNRKSLACYQMIFRHLFYCKYVERMICQVWKCNKVAKKFHFDDAQHYRAAFA 657

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LRQ+ML C+QNLEY+MM EVIE ++  F++ +++
Sbjct: 658 LRQRMLHCVQNLEYHMMVEVIEPHWCLFLQKISK 691

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
UNIPROTKB|B3KTU7	495	TUBGCP2 "Gamma-tubulin complex	0.511	0.179	0.511	5.2e-21
UNIPROTKB|J9P5U2	704	TUBGCP2 "Uncharacterized prote	0.511	0.126	0.522	7.5e-21
UNIPROTKB|A5D7P5	905	TUBGCP2 "Uncharacterized prote	0.528	0.101	0.521	9.2e-21
UNIPROTKB|F2Z2B9	721	TUBGCP2 "Gamma-tubulin complex	0.568	0.137	0.484	1e-20
UNIPROTKB|Q5ZKY5	895	TUBGCP2 "Uncharacterized prote	0.511	0.099	0.522	1.5e-20
UNIPROTKB|E1BZL5	906	TUBGCP2 "Uncharacterized prote	0.511	0.098	0.522	1.5e-20
UNIPROTKB|E1C2Y1	906	TUBGCP2 "Uncharacterized prote	0.511	0.098	0.522	1.5e-20
UNIPROTKB|Q9BSJ2	902	TUBGCP2 "Gamma-tubulin complex	0.511	0.098	0.511	1.9e-20
ZFIN|ZDB-GENE-031118-150	882	tubgcp2 "tubulin, gamma comple	0.517	0.102	0.516	3e-20
MGI|MGI:1921487	905	Tubgcp2 "tubulin, gamma comple	0.511	0.098	0.5	5.2e-20

UNIPROTKB|B3KTU7 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 46/90 (51%), Positives = 66/90 (73%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVERQLC+VW+ +K+ K  S  + + +  +F 
Sbjct:   215 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHSAQWFAGAFT 274

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIK 92
             LRQ+ML  +QN++YYMM EV+E  + H ++
Sbjct:   275 LRQRMLNFVQNIQYYMMFEVMEPTW-HILE 303

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|J9P5U2 TUBGCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 255 (94.8 bits), Expect = 7.5e-21, P = 7.5e-21
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVERQLCNVW+ +K+ K  S  + + +  +F 
Sbjct:   421 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCNVWISNKAAKQYSLHSAKWFAGAFT 480

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIK 92
             LRQ+ML  +QN++YYMM EV+E  + H ++
Sbjct:   481 LRQRMLNFVQNIQYYMMFEVMEPTW-HILE 509

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|A5D7P5 TUBGCP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 256 (95.2 bits), Expect = 9.2e-21, P = 9.2e-21
 Identities = 48/92 (52%), Positives = 66/92 (71%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVERQLC+VW+ +K+ K  S  + + +  +F 
Sbjct:   622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHSAKWFAGAFT 681

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSL 94
             LRQ+ML  +QN++YYMM EV+E  +    KSL
Sbjct:   682 LRQRMLNFVQNVQYYMMLEVVEPTWHVLEKSL 713

GO:0005813 "centrosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|F2Z2B9 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 48/99 (48%), Positives = 67/99 (67%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVERQLC+VW+ +K+ K  S  + + +  +F 
Sbjct:   622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHSAQWFAGAFT 681

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMP 101
             LRQ+ML  +QN++YYMM EV+E  +    K+L      P
Sbjct:   682 LRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASWTP 720

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVERQLCNVW+ +K+ K  S  + + +  +F 
Sbjct:   622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCNVWISNKTAKQFSLHSAKWFAGAFT 681

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIK 92
             LRQ+ML  +QN++YYMM EV+E  + H ++
Sbjct:   682 LRQRMLNFVQNIQYYMMFEVMEPTW-HILE 710

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVERQLCNVW+ +K+ K  S  + + +  +F 
Sbjct:   623 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCNVWISNKTAKQFSLHSAKWFAGAFT 682

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIK 92
             LRQ+ML  +QN++YYMM EV+E  + H ++
Sbjct:   683 LRQRMLNFVQNIQYYMMFEVMEPTW-HILE 711

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|E1C2Y1 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVERQLCNVW+ +K+ K  S  + + +  +F 
Sbjct:   623 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCNVWISNKTAKQFSLHSAKWFAGAFT 682

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIK 92
             LRQ+ML  +QN++YYMM EV+E  + H ++
Sbjct:   683 LRQRMLNFVQNIQYYMMFEVMEPTW-HILE 711

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 46/90 (51%), Positives = 66/90 (73%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVERQLC+VW+ +K+ K  S  + + +  +F 
Sbjct:   622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHSLHSAQWFAGAFT 681

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIK 92
             LRQ+ML  +QN++YYMM EV+E  + H ++
Sbjct:   682 LRQRMLNFVQNIQYYMMFEVMEPTW-HILE 710

GO:0000922 "spindle pole" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005813 "centrosome" evidence=IDA

GO:0005815 "microtubule organizing center" evidence=TAS

GO:0005881 "cytoplasmic microtubule" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0007020 "microtubule nucleation" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)]

 Score = 251 (93.4 bits), Expect = 3.0e-20, P = 3.0e-20
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVER LCNVW+ +K+ K  S    + +  +FA
Sbjct:   622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERLLCNVWISNKATKQYSLHTAKWFAAAFA 681

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIKS 93
             LRQ+ML  +QN++YYMM EV+E  + H +++
Sbjct:   682 LRQRMLNFVQNIQYYMMFEVMEPTW-HVMEN 711

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 45/90 (50%), Positives = 66/90 (73%)

Query:     3 VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
             V+WPLSLI N+K +  YQMLFRH+  CKHVERQLC+VW+ +K+ K  +  + + +  +F 
Sbjct:   622 VKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFT 681

Query:    63 LRQQMLFCIQNLEYYMMEEVIESNYTHFIK 92
             LRQ+ML  +QN++YYMM EV+E  + H ++
Sbjct:   682 LRQRMLNFVQNIQYYMMFEVMEPTW-HILE 710

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BSJ2	GCP2_HUMAN	No assigned EC number	0.5294	0.4885	0.0942	yes	N/A
Q5R5J6	GCP2_PONAB	No assigned EC number	0.5294	0.4885	0.0942	yes	N/A
Q921G8	GCP2_MOUSE	No assigned EC number	0.5176	0.4885	0.0939	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	174
pfam04130	528	pfam04130, Spc97_Spc98, Spc97 / Spc98 family	1e-22
pfam04130	528	pfam04130, Spc97_Spc98, Spc97 / Spc98 family	2e-07

>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family

 Score = 93.0 bits (231), Expect = 1e-22
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYL--KS 60
           V WPLSLI   + +  YQ +FR LL  K  E  L  +W      +    + R   L  K 
Sbjct: 410 VPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLWKELNKRRRLGSTRRNEPLLRKI 469

Query: 61  FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           + LR QML  + +L+YY+  +VIESN+    + L +
Sbjct: 470 WLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQK 505

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 116 SVWLCHKSVKTESKSARESYL--KSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN 173
            +W      +    + R   L  K + LR QML  + +L+YY+  +VIESN+    + L 
Sbjct: 445 KLWKELNKRRRLGSTRRNEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQ 504

Query: 174 E 174
           +
Sbjct: 505 K 505

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG2001|consensus	734		99.95
KOG2065|consensus	679		99.92
PF04130	542	Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00	99.84
KOG2001|consensus	734		99.57
KOG2000|consensus	879		99.24
KOG4344|consensus	1121		99.1
PF04130	542	Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00	97.7
KOG2000|consensus	879		96.55
KOG2065|consensus	679		91.57

>KOG2001|consensus

Probab=99.95  E-value=1e-26  Score=207.74  Aligned_cols=142  Identities=35%  Similarity=0.504  Sum_probs=114.6

Q ss_pred             CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3229           2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEE   81 (174)
Q Consensus         2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W~~~~~~~~~~~~~~~~~~~~~~Lr~~M~hFv~~L~~Yl~~d   81 (174)
                      +|+||||+||++++|.+||.||||+|.+|+||+.|+.+|..+...+..+..+..+.++++.||+||++||.++.||+++|
T Consensus       513 ~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~e  592 (734)
T KOG2001|consen  513 EVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQE  592 (734)
T ss_pred             ccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999988766666677899999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHhccchhhHH---HHHHHhhhhchhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3229          82 VIESNYTHFIKSLNEHFMMPMKK---ESIVELYCSNRSVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEY  154 (174)
Q Consensus        82 Vie~~w~~l~~~l~~a~~~~~l~---~~f~~~~Cl~~~~~l~~k~~k~~~~~~~~~~~~~~~l~~~ml~f~~~~~~  154 (174)
                      ||||+|..|.+.+++|..++.+.   ++|+ +.|++..+...          .....+.-+.|..-|+.|....+-
T Consensus       593 ViEp~W~~l~~~l~~a~~vD~Vl~~he~fl-d~CLk~ClL~~----------~~~llk~~~kL~~vCl~f~~~~q~  657 (734)
T KOG2001|consen  593 VIEPNWHSLEKCLKNARNVDEVLNEHEGFL-DTCLKRCLLTL----------SPLLLKSFSKLYKVCLMFCSFTQK  657 (734)
T ss_pred             hhcchHHHHHHHhhchhhHHHHHHHHHHHH-HHHHHhhccCC----------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988775544   4555 56664433222          123444455555555555554443

>KOG2065|consensus

Probab=99.92  E-value=3.6e-25  Score=191.87  Aligned_cols=122  Identities=25%  Similarity=0.437  Sum_probs=105.1

Q ss_pred             CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccch---hhhHhHHHHHHHHHHHHHHHHHHHHHh
Q psy3229           2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESK---SARESYLKSFALRQQMLFCIQNLEYYM   78 (174)
Q Consensus         2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W~~~~~~~~~~~---~~~~~~~~~~~Lr~~M~hFv~~L~~Yl   78 (174)
                      +|+||++++|||.++++||.+|+||+.+||++..|+.+|..+|..++...   +.++.++  +.+|+.|+++++|||||+
T Consensus       468 ~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm~r~h~~s~q~~d~~~I~--WRlRnhmaFl~~NlQyYi  545 (679)
T KOG2065|consen  468 EVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQMWRAHSASDQPPDNKIIT--WRLRNHMAFLLNNLQYYI  545 (679)
T ss_pred             EeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccch--HHHHHHHHHHHhhhheee
Confidence            68999999999999999999999999999999999999998875433221   1112333  789999999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHhccc------------hhhHHHHHHHh----hhhchhhhhhhhhhh
Q psy3229          79 MEEVIESNYTHFIKSLNEHFM------------MPMKKESIVEL----YCSNRSVWLCHKSVK  125 (174)
Q Consensus        79 ~~dVie~~w~~l~~~l~~a~~------------~~~l~~~f~~~----~Cl~~~~~l~~k~~k  125 (174)
                      ++||+|++|+.++..|++..|            .+++.|||++.    +||..+.-+|+|+|.
T Consensus       546 QVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLsnllsqsFll~~pV~~~L~~i~~lC~~Fcn  608 (679)
T KOG2065|consen  546 QVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLSNLLSQSFLLNEPVYGTLLKIFGLCEKFCN  608 (679)
T ss_pred             eehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999998544            47788899884    999999999999995

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin

Probab=99.84  E-value=1.8e-20  Score=165.41  Aligned_cols=108  Identities=25%  Similarity=0.500  Sum_probs=86.4

Q ss_pred             CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc----chhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy3229           2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTE----SKSARESYLKSFALRQQMLFCIQNLEYY   77 (174)
Q Consensus         2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W~~~~~~~~~----~~~~~~~~~~~~~Lr~~M~hFv~~L~~Y   77 (174)
                      +|||||++|||+++|.+|+.||+|||++||+++.|+++|...+..++.    ..+..+..++.+.+|++|.||++++++|
T Consensus       421 ~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~y  500 (542)
T PF04130_consen  421 KVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSVWRQLRRLSRKFGKPDRQSRPQLRRLQILRHRMQHFVNSLQSY  500 (542)
T ss_dssp             ---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGG--------S-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999988754221    1123356788899999999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHHhccchh---hHHHHHHH
Q psy3229          78 MMEEVIESNYTHFIKSLNEHFMMP---MKKESIVE  109 (174)
Q Consensus        78 l~~dVie~~w~~l~~~l~~a~~~~---~l~~~f~~  109 (174)
                      ++.+||+++|.+|.++++++.+++   ..|+.|++
T Consensus       501 ~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~  535 (542)
T PF04130_consen  501 LQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLD  535 (542)
T ss_dssp             HHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            999999999999999999987774   45566665

The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.

>KOG2001|consensus

Probab=99.57  E-value=3.8e-15  Score=134.02  Aligned_cols=65  Identities=37%  Similarity=0.603  Sum_probs=57.5

Q ss_pred             hhhhchhhhhh-----hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhcC
Q psy3229         110 LYCSNRSVWLC-----HKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE  174 (174)
Q Consensus       110 ~~Cl~~~~~l~-----~k~~k~~~~~~~~~~~~~~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~~  174 (174)
                      +.|.++++.+|     ++.++..+...+.|+|++++||+|||+|||+++||||+||||||||.|++.+++
T Consensus       538 f~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~  607 (734)
T KOG2001|consen  538 FYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKN  607 (734)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhc
Confidence            38888877554     566777888888999999999999999999999999999999999999998863

>KOG2000|consensus

Probab=99.24  E-value=1.8e-11  Score=114.67  Aligned_cols=98  Identities=24%  Similarity=0.379  Sum_probs=85.6

Q ss_pred             CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccc----cccc----hhhhHhHHHHHHHHHHHHHHHH
Q psy3229           2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQL-CNVWLCHKSV----KTES----KSARESYLKSFALRQQMLFCIQ   72 (174)
Q Consensus         2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L-~~~W~~~~~~----~~~~----~~~~~~~~~~~~Lr~~M~hFv~   72 (174)
                      .|.-|+++++|++++.+|-+||+|||++||+++.| .++|+..+..    +...    ........+++.+.++|.||+.
T Consensus       604 ~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~s  683 (879)
T KOG2000|consen  604 AVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDCNVAKRDRLLKIPEISCALHRCHILTNEMNHFIS  683 (879)
T ss_pred             eecccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhcchHHHHhhhhhhhhHHHHHHHHHH
Confidence            36789999999999999999999999999999999 8999998841    1111    1235678899999999999999


Q ss_pred             HHHHHhhhhhhhhhHHHHHHHHHhccc
Q psy3229          73 NLEYYMMEEVIESNYTHFIKSLNEHFM   99 (174)
Q Consensus        73 ~L~~Yl~~dVie~~w~~l~~~l~~a~~   99 (174)
                      ++|+|+.++|||.+|+++...+++|.+
T Consensus       684 q~q~y~~f~vie~~wk~l~~~~~~a~~  710 (879)
T KOG2000|consen  684 QMQYYILFEVIECSWKELSKKMEPARN  710 (879)
T ss_pred             hhhhccccchhhcChHHHHHHHhhccC
Confidence            999999999999999999999999755

>KOG4344|consensus

Probab=99.10  E-value=9.8e-10  Score=99.36  Aligned_cols=114  Identities=20%  Similarity=0.195  Sum_probs=90.0

Q ss_pred             CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccc---ccc--c--------------h-hhhHhHHHH
Q psy3229           2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVW-LCHKSV---KTE--S--------------K-SARESYLKS   60 (174)
Q Consensus         2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W-~~~~~~---~~~--~--------------~-~~~~~~~~~   60 (174)
                      .++||..+|+|+++|..|+.+|+.|+++|++.+.|+..- ....+.   ++.  +              . ...-.++|.
T Consensus       882 pmamhqdiiislacmkdYNqVflLlLkiKWAkwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRl  961 (1121)
T KOG4344|consen  882 PMAMHQDIIISLACMKDYNQVFLLLLKIKWAKWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRL  961 (1121)
T ss_pred             CcccchheEecHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHH
Confidence            379999999999999999999999999999999999842 222110   100  0              0 123468899


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhccchh---hHHHHHHH---hhhhch
Q psy3229          61 FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNEHFMMP---MKKESIVE---LYCSNR  115 (174)
Q Consensus        61 ~~Lr~~M~hFv~~L~~Yl~~dVie~~w~~l~~~l~~a~~~~---~l~~~f~~---~~Cl~~  115 (174)
                      ..+|-+++|||+||+.|||.-|+++...+|+.+++++.+.+   ++|...+.   ++|+..
T Consensus       962 eilRfkLiffiNnLHahIMeailhStgleFehqieEaKdldeLiiiHdehLatihdhClLr 1022 (1121)
T KOG4344|consen  962 EILRFKLIFFINNLHAHIMEAILHSTGLEFEHQIEEAKDLDELIIIHDEHLATIHDHCLLR 1022 (1121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhcCHHHHHHHHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999998874   44543333   477754

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin

Probab=97.70  E-value=4.5e-05  Score=67.45  Aligned_cols=42  Identities=24%  Similarity=0.477  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhcC
Q psy3229         133 ESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE  174 (174)
Q Consensus       133 ~~~~~~~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~~  174 (174)
                      ...++.+.+|.+|.+|++++++|++.+||+|+|..|.++|++
T Consensus       478 ~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~  519 (542)
T PF04130_consen  478 PQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEK  519 (542)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            468889999999999999999999999999999999999863

The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.

>KOG2000|consensus

Probab=96.55  E-value=0.0017  Score=61.84  Aligned_cols=44  Identities=23%  Similarity=0.433  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhcC
Q psy3229         131 ARESYLKSFALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE  174 (174)
Q Consensus       131 ~~~~~~~~~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~~  174 (174)
                      ....+.++..++.+|.||+.++|||.+|||||-||..+..++++
T Consensus       664 ~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~  707 (879)
T KOG2000|consen  664 ISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEP  707 (879)
T ss_pred             HHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhh
Confidence            34568899999999999999999999999999999999988864

>KOG2065|consensus

Probab=91.57  E-value=0.095  Score=47.09  Aligned_cols=35  Identities=31%  Similarity=0.719  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhc
Q psy3229         139 FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN  173 (174)
Q Consensus       139 ~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~  173 (174)
                      |.||.-|--++.|+|||+-+.|||..|..++..++
T Consensus       528 WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~  562 (679)
T KOG2065|consen  528 WRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIK  562 (679)
T ss_pred             HHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhc
Confidence            88999999999999999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
3rip_A	677	Crystal Structure Of Human Gamma-Tubulin Complex Pr		1e-09

>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 28/173 (16%)
Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WPL ++F   ++  Y ++F++LL  + V+ +L + W      K   KS +   +K + 
Sbjct: 458 VQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRK-HLKSNQTDAIK-WR 515
Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLN------------EHFMMPMKKESIVEL 110
           LR  M F + NL+YY+  +V+ES ++  +  +N            +HF+  +  +S + L
Sbjct: 516 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILL 575
Query: 111 ----YCSNRSVWLCHK---------SVKTESKSARESYL-KSFALRQQMLFCI 149
               +C N  + LCH              E  +A+ S L K F+ +  +LF I
Sbjct: 576 KPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKI 628

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
3rip_A	677	Gamma-tubulin complex component 4; helix bundles,	4e-16

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677

 Score = 73.9 bits (180), Expect = 4e-16
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 3   VEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFA 62
           V+WPL ++F   ++  Y ++F++LL  + V+ +L + W      K     + ++    + 
Sbjct: 458 VQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRK--HLKSNQTDAIKWR 515

Query: 63  LRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE 96
           LR  M F + NL+YY+  +V+ES ++  +  +N 
Sbjct: 516 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINS 549

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
3rip_A	677	Gamma-tubulin complex component 4; helix bundles,	99.9
3rip_A	677	Gamma-tubulin complex component 4; helix bundles,	98.55

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}

Probab=99.90  E-value=4.4e-23  Score=188.29  Aligned_cols=125  Identities=25%  Similarity=0.514  Sum_probs=99.4

Q ss_pred             CCCCccceeecHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3229           2 YVEWPLSLIFNQKIIGCYQMLFRHLLLCKHVERQLCNVWLCHKSVKTESKSARESYLKSFALRQQMLFCIQNLEYYMMEE   81 (174)
Q Consensus         2 ~V~wPL~lv~t~~~m~~Yq~iFrfL~~lKrve~~L~~~W~~~~~~~~~~~~~~~~~~~~~~Lr~~M~hFv~~L~~Yl~~d   81 (174)
                      +|||||++|||+++|.+|+.||||||++||+++.|+++|..++..+..... ....++ +.+|++|+|||+++++|+++|
T Consensus       457 ~v~~PL~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~-~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~  534 (677)
T 3rip_A          457 KVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSN-QTDAIK-WRLRNHMAFLVDNLQYYLQVD  534 (677)
T ss_dssp             CCCTTGGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSS-HHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCChHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-chhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999998765433211 223333 789999999999999999999


Q ss_pred             hhhhhHHHHHHHHHhccchhh---HHHHHHHh---hhh----------chhhhhhhhhhhhhc
Q psy3229          82 VIESNYTHFIKSLNEHFMMPM---KKESIVEL---YCS----------NRSVWLCHKSVKTES  128 (174)
Q Consensus        82 Vie~~w~~l~~~l~~a~~~~~---l~~~f~~~---~Cl----------~~~~~l~~k~~k~~~  128 (174)
                      |||++|.+|.++++++.+++.   .|+.|++.   .|+          .+...+|.++|...+
T Consensus       535 Vie~~w~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~  597 (677)
T 3rip_A          535 VLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVS  597 (677)
T ss_dssp             THHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999877644   44566652   444          334455666666443

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}

Probab=98.55  E-value=6.9e-08  Score=87.99  Aligned_cols=36  Identities=33%  Similarity=0.803  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhhcC
Q psy3229         139 FALRQQMLFCIQNLEYYMMEEVIESNYTHFIKSLNE  174 (174)
Q Consensus       139 ~~l~~~ml~f~~~~~~~~~~ev~e~~~~~~~~~~~~  174 (174)
                      +.+|++|++||++++||+++|||||+|+.|++++++
T Consensus       514 ~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~  549 (677)
T 3rip_A          514 WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINS  549 (677)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            899999999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00