Psyllid ID: psy3329

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690----
Protein Sequence
MWQGHPVYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGASRKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFRPPRTNSRKTRAAPSYINMEKLNSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQQRIRRNTFKSPCASDDED
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHccccccccEEEcccccccccccccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEcccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHcccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEEcccEEEEEEccEEHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEccccHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEcccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccHHHcccccccEEEcccccccccccHHHcccHHHHHHHHHccccHcHccccccccccHHHccccccEEEEcccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHccccccccccccccHHcccHHHccccccEEcccccccccccccccccccccccccEEEEccccccccHHcccccccccHHHHHHHHccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mwqghpvyndrrnldnpglitinlnanpiqpvEGAFLVARSLLYLYMQEctlskinpqfftnlttlnkldlsgnplriiepgvfdpltSLEYLMLNRcnltyispsafdnlnhLKTLELSQNKLKSHIDWTlvlgnlgkldtldlrqsgisnlpdnvfanntWLRNLNLAENELIDLDVATTLgqnlvhldsldlsnchlkgplsedafVNATKLRTLYLsgnplsaaDLSVALKPLTKLHRLSlrncglsrlpantfhrftclqeldishnpLIDAFTALlspleslehldmgysNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLElnncgltrlnetvfhenytypdleelrlsgnplhvlpdstkqysmrtiptqiwKNFDFLVILFILNEtvfhenytypdleelrlsgnplhvlptgnllppqlsrlrsldlsrckidylppnvfnntrnITSLNLannnlsmtsELSFQFLDVLLELEsldlsnnnlthisptvlrhnrAITSIklvgnpwkcdcniADMWEWAtrekgdigvlvgsttpteigfgasrkkkglVCYFdifttptrkrpgrelfaSTNKTWARYvkeadcpssklfrpprtnsrktraapsyinmeklnsksfltlgnfGLISVGVIILSAMVYFSFYARHLYRTKQQRIrrntfkspcasdded
Flexible Loop (DISEMBL)
mwqghpvyndrrnldNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDylppnvfnntrNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLthisptvlrhnRAITSiklvgnpwkcDCNIADMWEWATREKGDIGVLVGSttpteigfgasrkkkglvCYFDIfttptrkrpgrelFASTNKTWARYVKeadcpssklfrpprtnsrktraapsyinMEKLNSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYrtkqqrirrntfkspcasdded
Low Complexity Region (SEG)
MWQGHPVYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNllppqlsrlrsldlsrCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFldvllelesldlsnnnlTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGASRKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFRPPRTNSRKTRAAPSYINMEKLNSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQQRIRRNTFKSPCASDDED
Disordered region (IsUnstruct)
*************LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGASRKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKE*************************I*MEKLNSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQ******************
Disordered Region (DISOPRED)
MWQGHPVYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGASRKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFRPPRTNSRKTRAAPSYINMEKLNSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQQRIRRN************
Disordered Region (DISEMBL)
MWQGHPVYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGASRKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFRPPRTNSRKTRAAPSYINMEKLNSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQQRIRRNTF**********
Disordered Region (DISPRO)
MWQGHPVYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGASRKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFRPPRTNSRKTRAAPSYINMEKLNSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQQRIRRNTFK*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWQGHPVYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGASRKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFRPPRTNSRKTRAAPSYINMEKLNSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQQRIRRNTFKSPCASDDED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	694	2.2.26 [Sep-21-2011]
P35858	605	Insulin-like growth facto	yes	N/A	0.675	0.775	0.292	2e-27
O02833	605	Insulin-like growth facto	N/A	N/A	0.675	0.775	0.290	6e-26
P70389	603	Insulin-like growth facto	yes	N/A	0.658	0.757	0.272	6e-23
Q80X72	579	Leucine-rich repeat-conta	no	N/A	0.479	0.575	0.303	5e-22
Q8R5M3	578	Leucine-rich repeat-conta	no	N/A	0.498	0.598	0.308	2e-21
Q9DBB9	547	Carboxypeptidase N subuni	no	N/A	0.449	0.570	0.278	7e-21
P35859	603	Insulin-like growth facto	no	N/A	0.654	0.752	0.254	5e-20
Q8TF66	581	Leucine-rich repeat-conta	no	N/A	0.476	0.569	0.291	2e-19
Q6P1C6	1117	Leucine-rich repeats and	no	N/A	0.479	0.298	0.290	3e-19
P22792	545	Carboxypeptidase N subuni	no	N/A	0.425	0.541	0.279	8e-19

>sp|P35858|ALS_HUMAN Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 227/503 (45%), Gaps = 34/503 (6%)

Query: 45  LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
           L++    LS + P  F NL++L  L+L G  L  +EP     L +L +L L R  L  ++
Sbjct: 79  LWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLA 138

Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
              F +   L +L LS N+L S ++  L  G LG L  L+L  + ++ LPD  F     L
Sbjct: 139 LGTFAHTPALASLGLSNNRL-SRLEDGLFEG-LGSLWDLNLGWNSLAVLPDAAFRGLGSL 196

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
           R L LA N L  L  A   G  L  L  LDLS   L+  +  + FV   +L+ LYL  N 
Sbjct: 197 RELVLAGNRLAYLQPALFSG--LAELRELDLSRNALRA-IKANVFVQLPRLQKLYLDRN- 252

Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSP 284
           L AA    A   L  L  L L +  ++ L  +TF     L+ L +SHN +          
Sbjct: 253 LIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKD 312

Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
           L  LE L +G++ +++++  +F  +  L+ L L  N+L+ +++G F  LT+++V+ L+  
Sbjct: 313 LHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGN 372

Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
            L  L E VF        L  L L G+             +  I    +     L  LF+
Sbjct: 373 CLRNLPEQVFR---GLGKLHSLHLEGS------------CLGRIRPHTFTGLSGLRRLFL 417

Query: 405 LNETVF----HENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPP 460
            +  +        +   +L EL L+ N L  LP  + L   L +L  L LSR ++  LP 
Sbjct: 418 KDNGLVGIEEQSLWGLAELLELDLTSNQLTHLP--HRLFQGLGKLEYLLLSRNRLAELPA 475

Query: 461 NVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAI 520
           +     +    L++++N L     L    L  L  L  L L NN+L   +P        +
Sbjct: 476 DALGPLQRAFWLDVSHNRLEA---LPNSLLAPLGRLRYLSLRNNSLRTFTP----QPPGL 528

Query: 521 TSIKLVGNPWKCDCNIADMWEWA 543
             + L GNPW C C +  + ++A
Sbjct: 529 ERLWLEGNPWDCGCPLKALRDFA 551

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.
Homo sapiens (taxid: 9606)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score =  119 bits (299), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 146/503 (29%), Positives = 223/503 (44%), Gaps = 34/503 (6%)

Query: 45  LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
           L++    LS I P  F NL++L  L+L G  L  +EP     L +L +L L R  L  ++
Sbjct: 79  LWLDSNNLSSIPPAAFRNLSSLAFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLA 138

Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
              F     L  L LS N+L S ++  L  G LG L  L+L  + ++ LPD  F     L
Sbjct: 139 VGTFAYTPALALLGLSNNRL-SRLEDGLFEG-LGNLWDLNLGWNSLAVLPDAAFRGLGGL 196

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
           R L LA N L  L  A   G  L  L  LDLS   L+  +  + F    +L+ LYL  N 
Sbjct: 197 RELVLAGNRLAYLQPALFSG--LAELRELDLSRNALRA-IKANVFAQLPRLQKLYLDRN- 252

Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSP 284
           L AA    A   L  L  L L +  ++ L  +TF     L+ L +SHN +          
Sbjct: 253 LIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFED 312

Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
           L  LE L +G++ +++++  +F  +  L+ L L  N+L+ ++ G F  LT+++V+ L+  
Sbjct: 313 LHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKVGAFLGLTNVAVMNLSGN 372

Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
            L  L E VF        L  L L G+             +  I    +     L  LF+
Sbjct: 373 CLRNLPEQVFR---GLGKLHSLHLEGS------------CLGRIRPHTFAGLSGLRRLFL 417

Query: 405 LNETVF----HENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPP 460
            +  +        +   +L EL L+ N L  LP  + L   L +L  L LS  ++  LP 
Sbjct: 418 KDNGLVGIEEQSLWGLAELLELDLTSNQLTHLP--HQLFQGLGKLEYLLLSHNRLAELPA 475

Query: 461 NVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAI 520
           +     +    L++++N L     L    L  L  L  L+L NN+L   +P        +
Sbjct: 476 DALGPLQRAFWLDVSHNRLEA---LPGSLLASLGRLRYLNLRNNSLRTFTP----QPPGL 528

Query: 521 TSIKLVGNPWKCDCNIADMWEWA 543
             + L GNPW C C +  + ++A
Sbjct: 529 ERLWLEGNPWDCSCPLKALRDFA 551

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score =  110 bits (274), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 144/528 (27%), Positives = 231/528 (43%), Gaps = 71/528 (13%)

Query: 45  LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
           L++    LS I    F NL++L+ L+L G+ LR +EP     L +L +L L R  L  ++
Sbjct: 79  LWLDGNNLSSIPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYHLHLERNLLRSLA 138

Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
              F +   L +L L  N L   ++  L  G L  L  L+L  + +  LPD VF     L
Sbjct: 139 AGLFRHTPSLASLSLG-NNLLGRLEEGLFRG-LSHLWDLNLGWNSLVVLPDTVFQGLGNL 196

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
             L LA N+L  L  A   G  L  L  LDLS   L+  +  + F++  +L+ LYL  N 
Sbjct: 197 HELVLAGNKLTYLQPALLCG--LGELRELDLSRNALRS-VKANVFIHLPRLQKLYLDRNL 253

Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSP 284
           ++A     A   +  L  L L +  ++ L  +TF     L  L ++HN +          
Sbjct: 254 ITAVA-PRAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRLAHNAITSLRPRTFKD 312

Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
           L  LE L +G++ ++++   TF  +  L+ L L+ N++  ++ G F  L +++V+ L+  
Sbjct: 313 LHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQIHEVKVGAFFGLFNVAVMNLSGN 372

Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
            L  L E VF        L  L    + LH+     +   +  I    +     L  LF+
Sbjct: 373 CLRSLPEHVFQ------GLGRL----HSLHL-----EHSCLGRIRLHTFAGLSGLRRLFL 417

Query: 405 LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFN 464
            + ++         +EE  L+G               LS L  LDL+  ++ +LP  +F 
Sbjct: 418 RDNSI-------SSIEEQSLAG---------------LSELLELDLTANQLTHLPRQLFQ 455

Query: 465 NTRNITSLNLANNNLSMTSELSFQFLDVLLELES---LDLSNNNLTHISPTV-------- 513
               +  L L+NN L+M SE      DVL  L+    LDLS+N L   +  +        
Sbjct: 456 GLGQLEYLLLSNNQLTMLSE------DVLGPLQRAFWLDLSHNRLETPAEGLFSSLGRLR 509

Query: 514 ---LRHNRAITSIKLVG--------NPWKCDCNIADMWEWATREKGDI 550
              LR+N   T +   G        NPW C C +  + ++A +  G +
Sbjct: 510 YLNLRNNSLQTFVPQPGLERLWLDANPWDCSCPLKALRDFALQNPGVV 557

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|Q80X72|LRC15_MOUSE Leucine-rich repeat-containing protein 15 OS=Mus musculus GN=Lrrc15 PE=2 SV=1

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 162/362 (44%), Gaps = 29/362 (8%)

Query: 33  EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY 92
           E  FL   +L+ L M++  L+ I P  F NL +L  L L+ N L+ +   +F  + +LE 
Sbjct: 70  EDKFLNISALIALKMEKNELANIMPGAFRNLGSLRHLSLANNKLKNLPVRLFQDVNNLET 129

Query: 93  LMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISN 152
           L+L+   L  I P+ F   ++LK L+L  N L+   +   V  +L  L  L+L  +G ++
Sbjct: 130 LLLSNNQLVQIQPAQFSQFSNLKELQLYGNNLEYIPEG--VFDHLVGLTKLNLGNNGFTH 187

Query: 153 LPDNVFANNTWLRNLNLAENELIDLDVAT------------------TLGQNLVH----L 190
           L   VF +   L+ L L EN L D+ + T                  TL   L H    L
Sbjct: 188 LSPRVFQHLGNLQVLRLYENRLSDIPMGTFDALGNLQELALQENQIGTLSPGLFHNNRNL 247

Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
             L LSN H+   L    F+    L  L L GN L      V   P+  L  L L N  +
Sbjct: 248 QRLYLSNNHISH-LPPGIFMQLPHLNKLTLFGNSLKELSPGV-FGPMPNLRELWLYNNHI 305

Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT 310
           + LP N F     LQ L +SHN L        + L +L  L +  + LQ +  + F  + 
Sbjct: 306 TSLPDNAFSHLNQLQVLILSHNQLSYISPGAFNGLTNLRELSLHTNALQDLDGNVFRSLA 365

Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG 370
           +L+ + L  N+L  L   +F N+  L  ++L N  L  L   +F       +L ELRL  
Sbjct: 366 NLRNVSLQNNRLRQLPGSIFANVNGLMTIQLQNNNLENLPLGIFDH---LGNLCELRLYD 422

Query: 371 NP 372
           NP
Sbjct: 423 NP 424

Mus musculus (taxid: 10090)

>sp|Q8R5M3|LRC15_RAT Leucine-rich repeat-containing protein 15 OS=Rattus norvegicus GN=Lrrc15 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 163/356 (45%), Gaps = 10/356 (2%)

Query: 18  GLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
            LI + +  N +  +  GAF    SL YL +    L  +  + F ++  L  L LS N L
Sbjct: 78  ALIALKMEKNELSTIMPGAFRNLGSLRYLSLANNKLRMLPIRVFQDVNNLESLLLSNNQL 137

Query: 77  RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
             I+P  F   ++L  L L+  NL  I   AFD+L  L  L L +N   +H+   L   +
Sbjct: 138 VQIQPAQFSQFSNLRELQLHGNNLESIPEEAFDHLVGLTKLNLGRNSF-THLSPRL-FQH 195

Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
           LG L  L L ++ +S++P   F     L+ L L EN++  L  +  L  N  +L  L LS
Sbjct: 196 LGNLQVLRLHENRLSDIPMGTFDALGNLQELALQENQIGTL--SPGLFHNNRNLQRLYLS 253

Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
           N H+   L    F+   +L  L L GN L      V   P+  L  L L N  ++ L  N
Sbjct: 254 NNHISQ-LPPGIFMQLPQLNKLTLFGNSLRELSPGV-FGPMPNLRELWLYNNHITSLADN 311

Query: 257 TFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
           TF     LQ L +SHN L        + L +L  L +  + LQ +  + F  + +L+ + 
Sbjct: 312 TFSHLNQLQVLILSHNQLTYISPGAFNGLTNLRELSLHTNALQDLDSNVFRSLANLQNIS 371

Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
           L  N+L  L   +F N+  L+ ++L N  L  L   +F       +L ELRL  NP
Sbjct: 372 LQSNRLRQLPGSIFANVNGLTTIQLQNNNLENLPLGIFDH---LVNLCELRLYDNP 424

Rattus norvegicus (taxid: 10116)

>sp|Q9DBB9|CPN2_MOUSE Carboxypeptidase N subunit 2 OS=Mus musculus GN=Cpn2 PE=1 SV=2

 Score =  102 bits (255), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 163/377 (43%), Gaps = 65/377 (17%)

Query: 206 EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
           E AF   T +RT   SG+P               L ++   N  +  L  + F     LQ
Sbjct: 58  ETAF---TTVRTRAFSGSP--------------NLTKVVFLNTQVRHLEPDAFGGLPRLQ 100

Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
           +L+I+ +P+ +    + S L SLE L + +  L  +    F  M  L++L L GN+L TL
Sbjct: 101 DLEITGSPVSNLSAHIFSNLSSLEKLTLDFDRLAGLPEDLFCHMDILESLQLQGNQLRTL 160

Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST----- 380
              LFQ+L  L  L L    LT+L +  F    +   L+ L+LS N L  LP+       
Sbjct: 161 PGRLFQSLRDLRTLNLAQNLLTQLPKGAFQ---SLTGLQMLKLSNNMLARLPEGALGSLS 217

Query: 381 -------KQYSMRTIPTQIWKNFDFLVILFILNETVFH---------ENYTYPDLEE--- 421
                     ++  +   ++     L +L++ +  + H          N T+  L++   
Sbjct: 218 SLQELFLDGNAITELSPHLFSQLFSLEMLWLQHNAICHLPVSLFSSLHNLTFLSLKDNAL 277

Query: 422 ----------------LRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNN 465
                           L LS N L  +P G      LSRL SL LS   I  LP +VF N
Sbjct: 278 RTLPEGLFAHNQGLLHLSLSYNQLETIPEGAF--TNLSRLVSLTLSHNAITDLPEHVFRN 335

Query: 466 TRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
              +  L+L +NNL+      F  L     L+ L+LS N LT +   +   N  + ++ L
Sbjct: 336 LEQLVKLSLDSNNLTALHPALFHNLS---RLQLLNLSRNQLTTLPGGIFDTNYDLFNLAL 392

Query: 526 VGNPWKCDCNIADMWEW 542
           +GNPW+CDC+++ +  W
Sbjct: 393 LGNPWQCDCHLSYLTSW 409

The 83 kDa subunit binds and stabilizes the catalytic subunit at 37 degrees Celsius and keeps it in circulation. Under some circumstances it may be an allosteric modifier of the catalytic subunit.

Mus musculus (taxid: 10090)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score =  100 bits (248), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 135/531 (25%), Positives = 224/531 (42%), Gaps = 77/531 (14%)

Query: 45  LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
           L++    LS I    F NL++L+ L+L G+ LR +EP     L +L YL L R  L  ++
Sbjct: 79  LWLDGNNLSSIPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYYLHLERNRLRNLA 138

Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
              F +           + L   ++  L  G L  L  L+L  + +  LPD VF     L
Sbjct: 139 VGLFTH-TPSLASLSLSSNLLGRLEEGLFQG-LSHLWDLNLGWNSLVVLPDTVFQGLGNL 196

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
             L LA N+L  L  A   G  L  L  LDLS   L+  +  + FV+  +L+ LYL  N 
Sbjct: 197 HELVLAGNKLTYLQPALFCG--LGELRELDLSRNALRS-VKANVFVHLPRLQKLYLDRNL 253

Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSP 284
           ++A      L  +  L  L L +  ++ L  +TF     L  L ++HN +          
Sbjct: 254 ITAVAPGAFLG-MKALRWLDLSHNRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKD 312

Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
           L  LE L +G++ ++++   TF  +  L+ L L+ N++  +  G F  L +++V+     
Sbjct: 313 LHFLEELQLGHNRIRQLGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMN---- 368

Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
                                  LSGN             +R++P ++++  D L  L +
Sbjct: 369 -----------------------LSGN------------CLRSLPERVFQGLDKLHSLHL 393

Query: 405 LNETVFHEN-YTYPDLEELR---LSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPP 460
            +  + H   +T+  L  LR   L  N +  +   +L    LS L  LDL+  ++ +LP 
Sbjct: 394 EHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSL--AGLSELLELDLTTNRLTHLPR 451

Query: 461 NVFNNTRNITSLNLANNNLSMTS-------------ELSFQFLDVLLE--------LESL 499
            +F    ++  L L+ N L+  S             ++S   L+ L E        +  L
Sbjct: 452 QLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSSLGRVRYL 511

Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDI 550
            L NN+L   SP        +  + L  NPW C C +  + ++A +  G +
Sbjct: 512 SLRNNSLQTFSP-----QPGLERLWLDANPWDCSCPLKALRDFALQNPGVV 557

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

>sp|Q8TF66|LRC15_HUMAN Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=1 SV=2

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 162/364 (44%), Gaps = 33/364 (9%)

Query: 33  EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI-------------- 78
           E  FL   +L+ L +++  LS+I P  F NL +L  L L+ N L++              
Sbjct: 70  ESPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLDSLES 129

Query: 79  ----------IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
                     I+P  F   ++L+ L L+  +L YI   AFD+L  L  L L +N L +HI
Sbjct: 130 LLLSSNQLLQIQPAHFSQCSNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSL-THI 188

Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
               V  +LG L  L L ++ ++++P   F     L+ L L +N++  L  +  L  N  
Sbjct: 189 S-PRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLL--SPGLFHNNH 245

Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
           +L  L LSN H+   L    F+   +L  L L GN L      +   P+  L  L L + 
Sbjct: 246 NLQRLYLSNNHISQ-LPPSVFMQLPQLNRLTLFGNSLKELSPGI-FGPMPNLRELWLYDN 303

Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK 308
            +S LP N F     LQ L +S N +        + L  L  L +  + LQ +  + F  
Sbjct: 304 HISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRM 363

Query: 309 MTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
           + +L+ + L  N+L  L   +F N+  L  ++L N  L  L   +F        L ELRL
Sbjct: 364 LANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLPLGIFDH---LGKLCELRL 420

Query: 369 SGNP 372
             NP
Sbjct: 421 YDNP 424

Homo sapiens (taxid: 9606)

>sp|Q6P1C6|LRIG3_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Mus musculus GN=Lrig3 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 175/372 (47%), Gaps = 39/372 (10%)

Query: 19  LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN---- 74
           L  + LN N ++ +     ++ ++  L +    + KI P+      +L  LDLS N    
Sbjct: 100 LQEVKLNNNELETIPNLGSISANIRQLSLAGNAIDKILPEQLEAFQSLETLDLSNNNISE 159

Query: 75  ------PLRI------------IEPGVFDPLTS-LEYLMLNRCNLTYISPSAFDNLNHLK 115
                 PL++            +EPG FD L S L  L LNR  ++ I P  F  L  L+
Sbjct: 160 LRTAFPPLQLKYLYINNNRVSSMEPGYFDNLASTLLVLKLNRNRISAIPPKMF-KLPQLQ 218

Query: 116 TLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELI 175
            LEL++NK+K ++D  L    LG L +L ++++G++ L D  F   + +  L L  N L 
Sbjct: 219 HLELNRNKIK-NVD-GLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEVLQLDHNNLT 276

Query: 176 DLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALK 235
           ++      G  L+ L  L LS   +   +S DA+    KL  L L+ N LS  D S  L 
Sbjct: 277 EITKGWLYG--LLMLRELHLSQNAINR-ISPDAWEFCQKLSELDLTFNHLSRLDDSSFLG 333

Query: 236 PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL---IDAFTALLSPLESLEHLD 292
            L+ L+ L + N  +S +    F   T L+ LD+ +N +   I+  +   S L+ L  L 
Sbjct: 334 -LSLLNALHIGNNKVSYIADCAFRGLTSLKTLDLRNNEISWTIEDMSGAFSGLDRLRQLI 392

Query: 293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN------NCGL 346
           +  + ++ I++  F  + +L+ L LSGN + +L+S  F  +  L  L LN      +C L
Sbjct: 393 LQGNRIRSITKKAFAGLDTLEHLDLSGNAIMSLQSNAFSQMKKLQQLHLNTSSLLCDCQL 452

Query: 347 TRLNETVFHENY 358
             L + V   N+
Sbjct: 453 RWLPQWVAENNF 464

Mus musculus (taxid: 10090)

>sp|P22792|CPN2_HUMAN Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CPN2 PE=1 SV=3

 Score = 96.3 bits (238), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 152/343 (44%), Gaps = 48/343 (13%)

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
           L ++   N  L +   + F     L++L+++ +  ++  T + S L SL  L + ++ L+
Sbjct: 75  LTKVVFLNTQLCQFRPDAFGGLPRLEDLEVTGSSFLNLSTNIFSNLTSLGKLTLNFNMLE 134

Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
            +    F  + +L++L L GN+L+ L   LFQ LTHL  L L    L +L E +FH    
Sbjct: 135 ALPEGLFQHLAALESLHLQGNQLQALPRRLFQPLTHLKTLNLAQNLLAQLPEELFHP--- 191

Query: 360 YPDLEELRLSGNPLHVLPDST------------KQYSMRTIPTQIWKNFDFLVILFILNE 407
              L+ L+LS N L  LP                  ++  +P Q++     L  L++   
Sbjct: 192 LTSLQTLKLSNNALSGLPQGVFGKLGSLQELFLDSNNISELPPQVFSQLFCLERLWLQRN 251

Query: 408 TVFH---------ENYTY-------------------PDLEELRLSGNPLHVLPTGNLLP 439
            + H          N T+                   P L  L L+ N L  +  G    
Sbjct: 252 AITHLPLSIFASLGNLTFLSLQWNMLRVLPAGLFAHTPCLVGLSLTHNQLETVAEGTF-- 309

Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL 499
             LS LRSL LS   I +LP  +F +   +  L L +NNL+      FQ    L +LE L
Sbjct: 310 AHLSNLRSLMLSYNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQ---NLSKLELL 366

Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
            LS N LT +   +   N  + ++ L GNPW+CDC++A ++ W
Sbjct: 367 SLSKNQLTTLPEGIFDTNYNLFNLALHGNPWQCDCHLAYLFNW 409

The 83 kDa subunit binds and stabilizes the catalytic subunit at 37 degrees Celsius and keeps it in circulation. Under some circumstances it may be an allosteric modifier of the catalytic subunit.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	694
193629645	767	PREDICTED: platelet glycoprotein V-like	0.848	0.767	0.551	0.0
189242341	738	PREDICTED: similar to AGAP011947-PA [Tri	0.795	0.747	0.483	1e-138
357620201	746	hypothetical protein KGM_03689 [Danaus p	0.783	0.729	0.461	1e-134
345483781	694	PREDICTED: toll-like receptor 3-like iso	0.768	0.768	0.457	1e-123
110755367	671	PREDICTED: toll-like receptor 13-like is	0.766	0.792	0.467	1e-122
380013972	671	PREDICTED: toll-like receptor 13-like is	0.766	0.792	0.463	1e-122
383856950	672	PREDICTED: slit homolog 2 protein-like [	0.766	0.791	0.454	1e-121
307167931	677	Insulin-like growth factor-binding prote	0.759	0.778	0.437	1e-116
307194207	676	Insulin-like growth factor-binding prote	0.762	0.782	0.440	1e-115
332024974	707	Insulin-like growth factor-binding prote	0.759	0.745	0.445	1e-115

>gi|193629645|ref|XP_001950955.1| PREDICTED: platelet glycoprotein V-like [Acyrthosiphon pisum]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/660 (55%), Positives = 445/660 (67%), Gaps = 71/660 (10%)

Query: 14  LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSG 73
           +D+ GLIT+ L  NP++ VEG FL ++SLLYLY+    L+K++PQFF N++ L+KLD+SG
Sbjct: 129 VDSAGLITLELQGNPLEQVEGPFLYSKSLLYLYLANSHLTKLSPQFFANISGLDKLDISG 188

Query: 74  NPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV 133
           NPL IIEPG+FDPLTSL++L+LN CNLT+IS  AF +L HL  LEL+ N LKSH+DWTL+
Sbjct: 189 NPLHIIEPGIFDPLTSLKHLILNNCNLTHISSVAFSSLGHLTVLELAGNSLKSHVDWTLI 248

Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
           LGNLG+L+ LDLRQSG+SNLP+NVF NNTWLR L LAENEL DLDVATTLG NLVHLD L
Sbjct: 249 LGNLGRLEHLDLRQSGVSNLPENVFFNNTWLRGLVLAENELSDLDVATTLGHNLVHLDFL 308

Query: 194 DLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
           DLS CHLKGPLSEDAF NATKLRTL LSGN LSAADL+VAL PL KL +LSLR+CGL+RL
Sbjct: 309 DLSYCHLKGPLSEDAFANATKLRTLILSGNHLSAADLAVALSPLLKLVKLSLRDCGLTRL 368

Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313
           PANTFH+FT LQELDIS NPL +AFTALLSPLESLEHLDMGYSNLQRISR+TFLKM++LK
Sbjct: 369 PANTFHKFTSLQELDISRNPLNNAFTALLSPLESLEHLDMGYSNLQRISRTTFLKMSALK 428

Query: 314 TLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
           TLILSGNKL++LESGLFQNLT L VLELNNCGL+RLN+TVF++N+TYPDLEELRLSGNPL
Sbjct: 429 TLILSGNKLKSLESGLFQNLTRLEVLELNNCGLSRLNDTVFYDNFTYPDLEELRLSGNPL 488

Query: 374 HVLPDSTKQYSMRTIPTQI--WKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
            V  +         +P Q+   KN D       L+        T P++ +L L+ N L  
Sbjct: 489 QVPEEGP------ILPPQLSGLKNLDMSKC--NLSHLPVDAFITTPNISQLLLNDNKLKS 540

Query: 432 LPTGNL-LPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFL 490
              G++     L+ L  LDLS   I  + P+ F     + SL L  N             
Sbjct: 541 DEEGSMKFLESLTGLEQLDLSFNNITAIKPDKFGYNHQLMSLRLVGN------------- 587

Query: 491 DVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDI 550
                                                 PWKCDC + DMWEWA   KG+I
Sbjct: 588 --------------------------------------PWKCDCYVVDMWEWAASSKGNI 609

Query: 551 GVLVGSTTPTEIGFGASRKKKGLVCYFDIFTTPTR----KRPGRELFASTNKTWARYVKE 606
           GVLVGST         ++K KGLVC FD  +TP +    +RPGREL +S  +TWARYV+E
Sbjct: 610 GVLVGSTKSIASNVN-NKKTKGLVCNFDPKSTPVKEAKLRRPGRELTSSVQRTWARYVRE 668

Query: 607 ADCPSSKL-FRPPRTNSRKTRA-APSYINMEKLNSKSFLTLGNFG--LISVGVIILSAMV 662
           A+CP S +  RP R  +R+     P    +EK     +L L +F   L+ V  +++S ++
Sbjct: 669 ANCPHSPVAARPARIVTREVHEYQPMLSEIEKETENKWLPLISFCAVLLLVSAVMMSVLI 728

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189242341|ref|XP_001807206.1| PREDICTED: similar to AGAP011947-PA [Tribolium castaneum] gi|270016565|gb|EFA13011.1| hypothetical protein TcasGA2_TC001976 [Tribolium castaneum]

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 306/633 (48%), Positives = 396/633 (62%), Gaps = 81/633 (12%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
           D+PG IT+ L  NP++PV+G FL  +SLLYL +  C L  +NP FF N+T L+ LDLSGN
Sbjct: 127 DSPGFITLELQGNPLEPVDGIFLSIKSLLYLDISNCGLKYLNPLFFANITALSTLDLSGN 186

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
           PL +I+  VF+PL+SLE L +N CNLTYI+  AF++L +LK LELS N L +  DW+ VL
Sbjct: 187 PLGVIDNKVFEPLSSLETLKMNGCNLTYIANYAFNSLENLKNLELSANMLTT--DWSSVL 244

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             L +L+ LDLR S I +LP++VF NNT+LR L LA+NEL D DV+ T+G+ L  LDSLD
Sbjct: 245 DYLPRLEYLDLRNSQIRHLPESVFRNNTYLRTLILAQNELNDFDVSQTVGK-LQQLDSLD 303

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
           LS C+L  PLSEDAFVNATK+R+L+LSGN L A+DL VAL PL+ L RLSL NCGL+RLP
Sbjct: 304 LSFCNLTLPLSEDAFVNATKIRSLFLSGNSLFASDLLVALAPLSNLERLSLSNCGLTRLP 363

Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
            +TF  F  LQELDISHNPL DAF  LL+PL+ LE+L+MGYSNL  I+ ++F KMT++K 
Sbjct: 364 -DTFRNFKSLQELDISHNPLNDAFVKLLTPLDKLEYLNMGYSNLSYIAPTSFSKMTNMKR 422

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTR-LNETVFHENYTYPDLEELRLSGNPL 373
           L+LSGN L  LE+GLF NLT L  LELN+CGL R +N T+F  N TY DL EL+L+GNPL
Sbjct: 423 LVLSGNDLNNLEAGLFGNLTRLESLELNSCGLRRSINATLFFNNLTYTDLTELQLAGNPL 482

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLP 433
            V        S   +P Q+ +                        L  L LS   L  LP
Sbjct: 483 QV------SKSGPLLPRQLSR------------------------LLTLDLSNCNLTFLP 512

Query: 434 TGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVL 493
                                     P+ F  TRNIT+L L+ N+ S    L  QFL++L
Sbjct: 513 --------------------------PDAFYWTRNITTLILSGNHFSSADNL--QFLELL 544

Query: 494 LELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVL 553
            +L+ LDL +N L+  SP  +  N  +  +KL+GNPW+CDC +A++W+WA  EKG +G+L
Sbjct: 545 PKLKVLDLRHNKLSSFSPKTIYLNPNVEKLKLIGNPWRCDCTVAELWDWANLEKGSLGIL 604

Query: 554 VGSTTPTE-IGFGAS-RKKKGLVCYFD------IFTTPTRKR-----PGRELFASTNKTW 600
            GST   E +  G + ++KK LVC +D      I T   R R     P R L  STN+TW
Sbjct: 605 EGSTIAAEHVTVGKTNKRKKLLVCNYDTSQPLPIITKTVRGRRPFIKPQRVL-TSTNRTW 663

Query: 601 ARYVKEADCPS-SKLFRPPRT---NSRKTRAAP 629
           A+YV+E+ C     L R PR    N R++   P
Sbjct: 664 AKYVRESGCEQLPVLQRSPRAADLNYRRSELEP 696

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620201|gb|EHJ72481.1| hypothetical protein KGM_03689 [Danaus plexippus]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 286/620 (46%), Positives = 380/620 (61%), Gaps = 76/620 (12%)

Query: 14  LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSG 73
           L++ GL+ + L +NP+  VEG FLV+ +L YL + +C LS INPQFF N+T+LN LDLS 
Sbjct: 128 LNSHGLLNVELQSNPLTLVEGPFLVSSTLQYLDISDCNLSTINPQFFDNITSLNTLDLSN 187

Query: 74  NPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV 133
           NPL ++E G FD LTSLE L LN C LT IS + F  L +LK LE++ N L S+++W  +
Sbjct: 188 NPLNVLESGTFDVLTSLETLKLNDCKLTNISENVFSALVNLKNLEIAGNYL-SNMNWPEL 246

Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
           LG L +L+ L+LR+S +++L ++ F+N T L  L LAENEL+DLDVA  LG ++ +L+ L
Sbjct: 247 LGTLSRLEYLNLRKSAVTSLSEDTFSNCTNLVTLILAENELLDLDVAAILGNSVNNLELL 306

Query: 194 DLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
           DLSNC ++ PLS +AF NAT+L+TL+LSGNPL A DL  AL PL K+ +L L NCGL  L
Sbjct: 307 DLSNCKIRRPLSGEAFANATRLKTLFLSGNPLFAPDLQEALSPLPKIEKLFLSNCGLRSL 366

Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313
           P N F+ F  L ELDISHNPL++ F  LL+PLE +E+L+MGYSNL  I   TF  MTSLK
Sbjct: 367 PDN-FNVFENLLELDISHNPLVNVFAKLLAPLEKIEYLNMGYSNLSYIGPETFAHMTSLK 425

Query: 314 TLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
            L+LSGN L +LE+GLF NLT L+ LEL  CGL R                       PL
Sbjct: 426 KLVLSGNDLLSLEAGLFGNLTQLTTLELELCGLKR-----------------------PL 462

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLP 433
           +                                  VF +N TY DL E+RL GNPL + P
Sbjct: 463 Y--------------------------------SNVFFKNLTYSDLREIRLGGNPLVIPP 490

Query: 434 TGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVL 493
           TG L P  LS++  LDLS C I  L P+ F NT N+T LNL+ N +  + E S  FL++L
Sbjct: 491 TGPLFPKILSQVVVLDLSNCNISSLNPDAFKNTMNLTELNLSGNKIK-SGEGSLSFLEIL 549

Query: 494 LELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVL 553
            +LE ++LSNNNLT I P +  +N  + SI L+GNP+ CDC IA+MW+WA   KG++ VL
Sbjct: 550 QQLEKINLSNNNLTTIDPQLFVNNPKLYSINLIGNPFSCDCKIAEMWDWANMIKGNLDVL 609

Query: 554 VGS-TTPTEIGFGASRKKKGLVCYFDIFTTPTRKRP--------GRELFAS------TNK 598
           VG+ +   +I    ++KK  L C ++   T  R +         GR  F         N+
Sbjct: 610 VGAKSAEKDIVVKGNKKKNNLYCRYN--ETQLRNKTLNTNKTVLGRRPFVKPRELTYANR 667

Query: 599 TWARYVKEADC-PSSKLFRP 617
           TWA+YV+E+ C P  K+ RP
Sbjct: 668 TWAKYVRESGCEPVVKILRP 687

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483781|ref|XP_003424883.1| PREDICTED: toll-like receptor 3-like isoform 1 [Nasonia vitripennis] gi|345483783|ref|XP_003424884.1| PREDICTED: toll-like receptor 3-like isoform 2 [Nasonia vitripennis]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 278/607 (45%), Positives = 365/607 (60%), Gaps = 74/607 (12%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
           D+PGLIT+ L  NP+  + G FL  R LL+L +  C +  +NPQFF N T LNKLDLS N
Sbjct: 146 DSPGLITLELQHNPLPEIRGHFLNCRPLLHLDLNTCGIRTLNPQFFHNTTNLNKLDLSNN 205

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
           PL  I+PG FD LTSLEYL L+ CNLT++SP AF +L +L+ LEL  N L S IDWT VL
Sbjct: 206 PLGSIKPGPFDHLTSLEYLKLSSCNLTHVSPDAFAHLENLRELELDDNDLSS-IDWTKVL 264

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             L +L+ L++R++ I+NLP + FA N +LR L LA+NEL  L+V +TLG NL  L +LD
Sbjct: 265 APLVRLEHLNIRKTRITNLPGDAFAKNLYLRQLILADNELQHLNVGSTLGHNLHSLQALD 324

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
           LSNC+L+  LSE+AF NA+KLR L LSGNP+ AADL+  L+ L KLH+LSL NC L RLP
Sbjct: 325 LSNCNLQDRLSEEAFRNASKLRVLNLSGNPMFAADLTAVLRHLPKLHKLSLSNCSLRRLP 384

Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
              F     L+ LD+SHNPL DAF  LL+PL+SLE+LDM Y NL  +  +TF  MTSLK 
Sbjct: 385 E-AFENLEHLEALDVSHNPLSDAFVRLLNPLKSLEYLDMSYCNLGYVGNNTFTLMTSLKK 443

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTR-LNETVFHENYTYPDLEELRLSGNPL 373
           LI+SGN L TLE GLF NLT L  LELN+CGL   L+  VF +   Y ++ EL+LS NPL
Sbjct: 444 LIMSGNTLHTLEQGLFANLTRLESLELNDCGLKNPLDPKVFGDR-VYANIIELKLSKNPL 502

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLP 433
            V PD         +P Q+                         +LE L L         
Sbjct: 503 TV-PDDGP-----LLPKQL------------------------SNLESLDL--------- 523

Query: 434 TGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVL 493
                            S C I  L  N+F+ T N+T LNL+NN ++  + L+   L  L
Sbjct: 524 -----------------SYCDITRLNENLFSRTSNLTRLNLSNNRIAGANNLA--SLKKL 564

Query: 494 LELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVL 553
             L  LDLS+NNLT I P V ++N  + S+ L+ NP+ C+C+I DMW+WA + K D+ VL
Sbjct: 565 QRLGHLDLSSNNLTTIHPKVFKNNLHLLSVNLMNNPFVCNCSIVDMWDWAVQVKNDLDVL 624

Query: 554 VGSTTPTEIGFGASRKKKGLVCYFDIFT-----------TPTRKRPGRELFASTNKTWAR 602
           VGS  P++    A++ +K L C +D  T           +  RK   R+   + N+TWA+
Sbjct: 625 VGS-QPSQFTTRAAKLRKSLSCSYDQETYRNILEQSRVSSSDRKTLLRKGDLTPNRTWAK 683

Query: 603 YVKEADC 609
           Y++E+ C
Sbjct: 684 YIRESQC 690

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110755367|ref|XP_001120678.1| PREDICTED: toll-like receptor 13-like isoform 1 [Apis mellifera] gi|328787378|ref|XP_003250935.1| PREDICTED: toll-like receptor 13-like isoform 2 [Apis mellifera]

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 285/610 (46%), Positives = 370/610 (60%), Gaps = 78/610 (12%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
           D+PGLIT+ L  NP++ V+G FL  R+LLYL +  C +  +N QFF N T LNKLDLS N
Sbjct: 127 DSPGLITLELQNNPLEEVKGHFLKCRTLLYLDLNSCGIRHLNTQFFHNTTNLNKLDLSHN 186

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
           PL  I+PG FD L +LEYL LN CNLT+IS  AF +L +L+ LE+++N L++ + WT VL
Sbjct: 187 PLGQIKPGPFDHLANLEYLKLNACNLTHISSIAFAHLENLRELEMAENDLRT-LSWTSVL 245

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             L +L+ L++R++GI+NLP + FA N +LR L LA+NEL  LDV  TLG NL  L SLD
Sbjct: 246 APLVRLEYLNIRKTGITNLPGDAFAQNLYLRQLVLADNELWHLDVGNTLGHNLHSLQSLD 305

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
           LSNC+L+  LSE+AF NA+KLR L LSGNP+ AADL+V L+ L KLH+LSL NC L RLP
Sbjct: 306 LSNCNLQDRLSEEAFKNASKLRVLNLSGNPMFAADLTVVLRHLPKLHKLSLSNCSLQRLP 365

Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
            N FH F  L+ELDISHNPL +AF +LL+PLESLE+LDM Y NL  +  +TF  MT LK 
Sbjct: 366 -NAFHIFKHLEELDISHNPLTNAFVSLLNPLESLEYLDMSYCNLGYVGNNTFAHMTFLKK 424

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGL-TRLNETVFHENYTYPDLEELRLSGNPL 373
           LILSGNKL TLE GLF NLT L  LELNNC L T ++  VF +  T  D+ EL+LSGN L
Sbjct: 425 LILSGNKLHTLEEGLFANLTRLESLELNNCDLKTPIDPKVFGDRLT-TDIIELKLSGNSL 483

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVI----LFILNETVFHENYTYPDLEELRLSGNPL 429
            V PD         +PTQ+  N + L +    L  LNE +F    T  +L +L LS N  
Sbjct: 484 EV-PDDGP-----LLPTQL-SNLEILDLSNCNLTHLNENLF---TTTKNLTQLNLSSNT- 532

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
            +  T NL    L +LR L+                      L+L+NN+LS  +   F+F
Sbjct: 533 -ISGTENL--ACLKKLRMLE---------------------HLDLSNNSLSTVNRRVFKF 568

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGD 549
                                      N  + S+ L+GNP+ C+C I DMW+WA + K D
Sbjct: 569 ---------------------------NSRLLSVNLLGNPFVCNCFITDMWDWAVQVKND 601

Query: 550 IGVLVGSTTPTEIGFGASRKKKGLVCYFDIFT-------TPTRKRPGRELFASTNKTWAR 602
           + VLVGS  P     GA++ +K L C +D  T         +  RP R+   S  +TWA+
Sbjct: 602 LHVLVGS-QPANFETGAAKLRKSLSCTYDDDTYRQIEQARASGDRPSRKGDLSRTRTWAK 660

Query: 603 YVKEADCPSS 612
           YV+E++C  S
Sbjct: 661 YVRESNCGRS 670

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013972|ref|XP_003691018.1| PREDICTED: toll-like receptor 13-like isoform 1 [Apis florea] gi|380013974|ref|XP_003691019.1| PREDICTED: toll-like receptor 13-like isoform 2 [Apis florea]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 283/610 (46%), Positives = 368/610 (60%), Gaps = 78/610 (12%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
           D+PGLIT+ L  NP++ V+G FL  R+LLYL +  C +  +N QFF N T LNKLDLS N
Sbjct: 127 DSPGLITLELQNNPLEEVKGHFLKCRTLLYLDLNSCGIRHLNTQFFHNTTNLNKLDLSHN 186

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
           PL  I+PG FD L +LEYL LN CNLT+IS  AF +L +L+ LE+++N L++ + WT VL
Sbjct: 187 PLGQIKPGPFDHLANLEYLKLNACNLTHISSIAFAHLENLRELEMAENDLRT-LSWTSVL 245

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             L +L+ L++R++GI+NLP + FA N +LR L LA+NEL  LDV  TLG NL  L SLD
Sbjct: 246 APLVRLEYLNIRKTGITNLPGDAFAQNLYLRQLVLADNELWHLDVGNTLGHNLHSLQSLD 305

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
           LSNC+L+  LSE+AF NA+KLR L LSGNP+ AADL+V L+ L KLH+LSL  C L RLP
Sbjct: 306 LSNCNLQDRLSEEAFKNASKLRVLNLSGNPMFAADLTVVLRHLPKLHKLSLSKCSLQRLP 365

Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
            N FH F  L+ELDISHNPL DAF +LL+PLESLE+LDM Y NL  +  +TF  MT LK 
Sbjct: 366 -NAFHIFKHLEELDISHNPLTDAFVSLLNPLESLEYLDMSYCNLGYVGNNTFAHMTFLKK 424

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGL-TRLNETVFHENYTYPDLEELRLSGNPL 373
           LILSGNKL TLE GLF NLT L  LELNNC L T ++  VF +  T  D+ EL+LSGN L
Sbjct: 425 LILSGNKLHTLEEGLFANLTRLESLELNNCDLKTPIDPKVFGDR-TTTDIIELKLSGNSL 483

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVI----LFILNETVFHENYTYPDLEELRLSGNPL 429
            V  D         +PTQ+  N + L +    L  LNE +F    T  +L +L LS N  
Sbjct: 484 EVPEDGP------LLPTQL-SNLEILDLSNCNLTHLNENLFS---TTKNLTQLNLSSNT- 532

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
            +  T NL    L +LR L+                      L+L+NN+L+  +   F+F
Sbjct: 533 -ISGTENL--ACLKKLRLLE---------------------HLDLSNNSLATVNRRVFKF 568

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGD 549
                                      N  + S+ L+GNP+ C+C I DMW+WA + K D
Sbjct: 569 ---------------------------NSRLLSVNLLGNPFVCNCFITDMWDWAVQVKND 601

Query: 550 IGVLVGSTTPTEIGFGASRKKKGLVCYFDIFT-------TPTRKRPGRELFASTNKTWAR 602
           + VLVGS  P     GA++ +K L C +D  T         +  RP R+   S  +TWA+
Sbjct: 602 LHVLVGS-QPANFETGAAKLRKSLSCTYDDDTYRQIEQARASGDRPSRKGDLSRTRTWAK 660

Query: 603 YVKEADCPSS 612
           YV+E++C  S
Sbjct: 661 YVRESNCGRS 670

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856950|ref|XP_003703969.1| PREDICTED: slit homolog 2 protein-like [Megachile rotundata]

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 278/612 (45%), Positives = 367/612 (59%), Gaps = 80/612 (13%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
           DNPGLIT+ L  NP+  V+G FL +R+LLYL +  C + ++N QFF N T LNK+DLS N
Sbjct: 126 DNPGLITLELQNNPLDEVKGHFLNSRTLLYLDLNSCGIRRLNTQFFHNTTNLNKVDLSHN 185

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
           PL  IEPG FD LT+LEYL LN CNLT++SP AF +L +L+ LE+++N L++ + WT +L
Sbjct: 186 PLGSIEPGPFDHLTNLEYLKLNACNLTHVSPDAFAHLENLRELEMAENDLRT-LSWTSIL 244

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             L +L+ L++R++GI+NLP + FA N +LR L LA+NEL  LDV  TLG NL  L SLD
Sbjct: 245 APLIRLEYLNIRKTGITNLPGDAFAKNLYLRQLVLADNELWHLDVGNTLGHNLHSLQSLD 304

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
           LSNC+L+  LSE+AF N++KLR L LSGNP+ AADL+  L+ L KLH+LSL NC L RLP
Sbjct: 305 LSNCNLQDRLSEEAFRNSSKLRVLNLSGNPMFAADLTAVLRHLPKLHKLSLSNCSLRRLP 364

Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
            N FH F  L+ELDISHNPL DAF +LL+PLESLE+LDM Y NL  +   TF  MT LK 
Sbjct: 365 -NAFHVFEHLEELDISHNPLSDAFVSLLNPLESLEYLDMSYCNLGYVGNYTFSHMTFLKK 423

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGL-TRLNETVFHENYTYPDLEELRLSGNPL 373
           LILSGNKL TLE GLF NLT L  LELNNC L T ++  VF +  T  D+ EL+LSGNPL
Sbjct: 424 LILSGNKLHTLEEGLFANLTRLESLELNNCDLKTPIDPKVFGDR-TSTDIIELKLSGNPL 482

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVI----LFILNETVFHENYTYPDLEELRLSGNPL 429
            V  + +       +P Q + N + L +    L  LNE +F    +  +L +L LSGN +
Sbjct: 483 EVPENGS------LLPEQ-FSNLETLDLSNCGLLHLNENLF---TSAKNLTQLNLSGNNI 532

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
             +     L  +L  L+ LD+S   +  + P VF   R++ S+NL NN            
Sbjct: 533 SRVENLACL-KKLRALQHLDISNNNLSTIIPGVFRWNRHLLSVNLLNN------------ 579

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGD 549
                                                  P+ C+C+IADMW WA +EK D
Sbjct: 580 ---------------------------------------PFVCNCSIADMWGWAVQEKND 600

Query: 550 IGVLVGSTTPTEIGFGASRKKKGLVCYFDIFT---------TPTRKRPGRELFASTNKTW 600
           + VLVGS  P     GA++ +K L C +D  T             +R  R+   +  +TW
Sbjct: 601 LHVLVGS-QPANFEAGAAKLRKSLTCNYDEETHRKIVEQARASGDQRRLRKGDLTPTRTW 659

Query: 601 ARYVKEADCPSS 612
           A+YV+E++C  S
Sbjct: 660 AKYVRESNCGRS 671

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167931|gb|EFN61305.1| Insulin-like growth factor-binding protein complex acid labile chain [Camponotus floridanus]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 267/610 (43%), Positives = 360/610 (59%), Gaps = 83/610 (13%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
           D+PGLIT+ L  NP++ VEG FL  R+LL+L +  C +  +N  FF N T L KLDLS N
Sbjct: 132 DSPGLITLELQHNPLEEVEGHFLNCRTLLHLDINSCGIHHLNTDFFHNTTNLKKLDLSHN 191

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
           PL  IEPG FD LT+LEYL LN CNLTYISP AF +L +L+ LE++ N+LK+ ++W  +L
Sbjct: 192 PLERIEPGPFDHLTNLEYLTLNGCNLTYISPEAFSHLENLRQLEIANNELKT-LNWRNIL 250

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             L +L+ LD+  +GI+NLP + FA N +LR L LA NEL  LDV  TLG NL  L SLD
Sbjct: 251 TPLVRLEHLDISNTGITNLPGDAFAKNLYLRQLVLANNELWHLDVEDTLGHNLHSLQSLD 310

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
           LSNC+L+   SE+AF NA+KLR L LSGNP+ A+DL+  L+ L KLH+LSL NC L RLP
Sbjct: 311 LSNCNLQDRFSEEAFTNASKLRVLNLSGNPMFASDLTAVLRHLPKLHKLSLSNCSLRRLP 370

Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
            + F  F  L+ELDISHNPL DAF +LL+PL SLE+LDM Y  L  +  +TF +MT LK 
Sbjct: 371 -DAFDVFEHLEELDISHNPLSDAFVSLLNPLTSLEYLDMSYCGLGHVGNNTFAQMTFLKQ 429

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGL-TRLNETVFHENYTYPDLEELRLSGNPL 373
           LILSGN+L TLE GLF NLT L  LELNNC L   L+  +F ++ +  ++ EL+LSGNPL
Sbjct: 430 LILSGNELHTLEEGLFANLTRLESLELNNCDLKIPLDPKIFGDHQS-TNIIELKLSGNPL 488

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN----YTYPDLEELRLSGNPL 429
            ++PD         +PTQ+ K    + IL + N ++ H N     T  +L +L LSGN +
Sbjct: 489 -IVPDEGS-----LLPTQLSK----VEILALSNCSISHLNENIFATTNNLTQLNLSGNTI 538

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
             +   + L  QL  L  +DLS   +  + P VF +   + S+NL  N            
Sbjct: 539 SGVENLSSL-KQLHALEHIDLSNNHLRTINPKVFESNPRLLSINLMGN------------ 585

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGD 549
                                                  P+ C+C+IA  W+WA +EKGD
Sbjct: 586 ---------------------------------------PFVCNCSIAQTWDWAVQEKGD 606

Query: 550 IGVLVGSTTPTEIGFGASRKKKGLVCYFDIFT----------TPTRKRPGRELFASTNKT 599
           + +LVGS   T    G+ ++++ L C +D  T          T +RK    +   S ++T
Sbjct: 607 LHILVGSQLST-FETGSVKRRRNLSCVYDEETYRNMTEGNQATSSRKHYSSQF--SPSRT 663

Query: 600 WARYVKEADC 609
           WA+YV+E++C
Sbjct: 664 WAKYVRESNC 673

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194207|gb|EFN76624.1| Insulin-like growth factor-binding protein complex acid labile chain [Harpegnathos saltator]

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 268/608 (44%), Positives = 364/608 (59%), Gaps = 79/608 (12%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
           D+PGLIT+ L  NP+  VEG FL  R+LLYL +  C + +++ +FF N T LNKLDLS N
Sbjct: 131 DSPGLITLELQHNPLDVVEGPFLNCRTLLYLDLNSCGIRQLDTRFFYNTTNLNKLDLSHN 190

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
           PL+ IEPG FD LT++EYL LN CNLTYIS  AF +L +L+ LE++ N LK+ ++W  +L
Sbjct: 191 PLQRIEPGPFDHLTNMEYLKLNGCNLTYISSEAFSHLENLRQLEIADNALKT-LNWRNLL 249

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             L +L+ LD+R +G++NLP + FA N +LR L LA+NEL  LDV  TLG NL  L SLD
Sbjct: 250 APLVRLEHLDIRDTGVTNLPGDAFAKNLYLRQLVLADNELWHLDVEDTLGHNLHSLQSLD 309

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
           LSNC+L+  LSE+AF NA+KLR L LSGNP+ A+DL+  L+ L KLH+LSL NC L RLP
Sbjct: 310 LSNCNLQDRLSEEAFRNASKLRVLNLSGNPMFASDLTAVLRHLPKLHKLSLSNCSLRRLP 369

Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
            N F  F  L+ELDISHNPL DAF +LL+PL SLE+LDM Y +L  +  +TF +MTSLK 
Sbjct: 370 -NAFDIFENLEELDISHNPLSDAFVSLLNPLRSLEYLDMSYCDLGYVGNNTFAQMTSLKQ 428

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGL-TRLNETVFHENYTYPDLEELRLSGNPL 373
           LILSGN+L TL+ GLF NLT L  LELNNC L   L+  VF  N    ++ EL+LSGNPL
Sbjct: 429 LILSGNELHTLQEGLFANLTRLESLELNNCDLKVPLDPKVF-GNRLSTNIIELKLSGNPL 487

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVI----LFILNETVFHENYTYPDLEELRLSGNPL 429
            V PD     S     TQ+  N + L +    +  LNE +F       +L +L LSGN +
Sbjct: 488 SV-PDEGSLLS-----TQL-SNLEILDLSNCGISHLNENIF---AAINNLTQLNLSGNTI 537

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
             +   + L  +L  L  +DLS   +  + P+VF +   + S+NL  N            
Sbjct: 538 SGVENLSSL-RKLHALEHVDLSNNNLSTINPSVFGSNPRLLSINLMGN------------ 584

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGD 549
                                                  P+ C+C+IA+ W+WA +EKGD
Sbjct: 585 ---------------------------------------PFICNCSIAETWDWAVQEKGD 605

Query: 550 IGVLVGSTTPTEIGFGASRKKKGLVCYFD-----IFTTPTRKRPGRELFAS---TNKTWA 601
           + VLVGS  P     G+++++K L C ++       T  ++    R+ + S    ++TWA
Sbjct: 606 LHVLVGS-QPANFETGSAKRRKNLSCSYNEETYRSMTAGSQAAASRKHYPSLFTPSRTWA 664

Query: 602 RYVKEADC 609
           +YV+E++C
Sbjct: 665 KYVRESNC 672

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024974|gb|EGI65161.1| Insulin-like growth factor-binding protein complex acid labile chain [Acromyrmex echinatior]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 272/610 (44%), Positives = 358/610 (58%), Gaps = 83/610 (13%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
           D+PGLIT+ L  NP+  VE  FL  R+LLYL +  C +  +N +FF N T LNKLDLS N
Sbjct: 162 DSPGLITLELQHNPLDEVEEPFLNCRTLLYLDLNSCGIWHLNTRFFYNTTNLNKLDLSHN 221

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
           PL  IEPG FD LT+LEYL LN CNLTYISP AF +L +L+ LE++ N+LK+ ++W  VL
Sbjct: 222 PLERIEPGPFDHLTNLEYLKLNGCNLTYISPEAFSHLENLRQLEIADNELKT-LNWRSVL 280

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             L +L+ LD+R++GI+NLP + F  N +L  L LA+NEL  LDV  TLG NL  L SLD
Sbjct: 281 TPLVRLEHLDIRKTGITNLPGDAFGKNLYLLQLVLADNELWHLDVEDTLGHNLHSLQSLD 340

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
           LSNC+L+  LSE+AF NA+KLR L LSGNP+ A+DL+  L+ L KLH+LSL NC L RLP
Sbjct: 341 LSNCNLQDRLSEEAFRNASKLRVLNLSGNPMFASDLTAVLRHLPKLHKLSLSNCSLRRLP 400

Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
            +TF  F  L+ELDIS+NPL DAF +LL+PL +LE+LDM Y  L  +  +TF +MT LK 
Sbjct: 401 -DTFDVFEHLEELDISYNPLSDAFVSLLNPLSALEYLDMSYCGLGYVGINTFAQMTFLKQ 459

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTR-LNETVFHENYTYPDLEELRLSGNPL 373
           LILSGN+L TLE GLF NLT L  LELNNC L   L+  VF +     D+ EL+LSGNPL
Sbjct: 460 LILSGNELHTLEEGLFANLTRLESLELNNCDLKAPLDPKVFGDR-ELTDIIELKLSGNPL 518

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN----YTYPDLEELRLSGNPL 429
            ++PD         +PTQ+ K    L IL + N  + H N     T  +L +L LSGN +
Sbjct: 519 -IVPDEGS-----LLPTQLSK----LEILDLSNCGISHLNEDIFATTNNLTQLNLSGNTI 568

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
             +   + L   LSRL  +DLS   +  + P +      + S+NL  N            
Sbjct: 569 SGVENLSSL-KTLSRLEHIDLSNNNLRTIHPKILKANPRLLSINLMGN------------ 615

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGD 549
                                                  P+ C+C+IA+ W+WA +EKGD
Sbjct: 616 ---------------------------------------PFICNCSIAETWDWAVQEKGD 636

Query: 550 IGVLVGSTTPTEIGFGASRKKKGLVCYFDIFT----------TPTRKRPGRELFASTNKT 599
           + VLVGS  P     G+ +++K L C +D  T          T  RK    +   S  +T
Sbjct: 637 LHVLVGS-QPANFETGSVKRRKNLSCAYDEETYRNMIDGSQSTANRKHYPSQFTPS--RT 693

Query: 600 WARYVKEADC 609
           WA+YV+E++C
Sbjct: 694 WAKYVRESNC 703

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	694
UNIPROTKB|Q8TF66	581	LRRC15 "Leucine-rich repeat-co	0.497	0.593	0.319	1.8e-27
RGD|70551	578	Lrrc15 "leucine rich repeat co	0.504	0.605	0.308	8.6e-27
MGI|MGI:1921738	579	Lrrc15 "leucine rich repeat co	0.504	0.604	0.305	5.3e-26
UNIPROTKB|P35858	605	IGFALS "Insulin-like growth fa	0.459	0.527	0.327	3.5e-25
UNIPROTKB|F1NI07	604	IGFALS "Uncharacterized protei	0.523	0.600	0.306	3e-24
WB|WBGene00022129	542	lron-11 [Caenorhabditis elegan	0.448	0.573	0.293	8.5e-24
FB|FBgn0028888	1443	CG4168 [Drosophila melanogaste	0.657	0.316	0.273	3.2e-23
RGD|1308146	582	Shoc2 "soc-2 (suppressor of cl	0.603	0.719	0.305	5.8e-23
UNIPROTKB|E2R260	582	SHOC2 "Uncharacterized protein	0.603	0.719	0.305	5.8e-23
UNIPROTKB|P22792	545	CPN2 "Carboxypeptidase N subun	0.459	0.585	0.311	1e-22

UNIPROTKB|Q8TF66 LRRC15 "Leucine-rich repeat-containing protein 15" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 113/354 (31%), Positives = 175/354 (49%)

Query:    24 LNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGV 83
             LN +  +  E  FL   +L+ L +++  LS+I P  F NL +L  L L+ N L+++  G+
Sbjct:    61 LNTHITELNESPFLNISALIALRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGL 120

Query:    84 FDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTL 143
             F  L SLE L+L+   L  I P+ F   ++LK L+L  N L+   D      +L  L  L
Sbjct:   121 FQGLDSLESLLLSSNQLLQIQPAHFSQCSNLKELQLHGNHLEYIPDGAF--DHLVGLTKL 178

Query:   144 DLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGP 203
             +L ++ ++++   VF +   L+ L L EN L D+ + T  G  LV+L  L L    + G 
Sbjct:   179 NLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDG--LVNLQELALQQNQI-GL 235

Query:   204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
             LS   F N   L+ LYLS N +S    SV ++ L +L+RL+L    L  L    F     
Sbjct:   236 LSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQ-LPQLNRLTLFGNSLKELSPGIFGPMPN 294

Query:   264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
             L+EL +  N +      + S L  L+ L +  + +  IS   F  +T L+ L L  N L+
Sbjct:   295 LRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQ 354

Query:   324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
              L+  +F+ L +L  + L N  L +L   +F  N     L  ++L  N L  LP
Sbjct:   355 DLDGNVFRMLANLQNISLQNNRLRQLPGNIF-ANVN--GLMAIQLQNNQLENLP 405

GO:0016021 "integral to membrane" evidence=IEA

RGD|70551 Lrrc15 "leucine rich repeat containing 15" [Rattus norvegicus (taxid:10116)]

 Score = 329 (120.9 bits), Expect = 8.6e-27, P = 8.6e-27
 Identities = 111/360 (30%), Positives = 164/360 (45%)

Query:    14 LDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
             L+   LI + +  N +  +  GAF    SL YL +    L  +  + F ++  L  L LS
Sbjct:    74 LNISALIALKMEKNELSTIMPGAFRNLGSLRYLSLANNKLRMLPIRVFQDVNNLESLLLS 133

Query:    73 GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
              N L  I+P  F   ++L  L L+  NL  I   AFD+L  L  L L +N   +H+   L
Sbjct:   134 NNQLVQIQPAQFSQFSNLRELQLHGNNLESIPEEAFDHLVGLTKLNLGRNSF-THLSPRL 192

Query:   133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
                +LG L  L L ++ +S++P   F     L+ L L EN++  L     L  N  +L  
Sbjct:   193 -FQHLGNLQVLRLHENRLSDIPMGTFDALGNLQELALQENQIGTLSPG--LFHNNRNLQR 249

Query:   193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
             L LSN H+   L    F+   +L  L L GN L      V   P+  L  L L N  ++ 
Sbjct:   250 LYLSNNHIS-QLPPGIFMQLPQLNKLTLFGNSLRELSPGV-FGPMPNLRELWLYNNHITS 307

Query:   253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
             L  NTF     LQ L +SHN L        + L +L  L +  + LQ +  + F  + +L
Sbjct:   308 LADNTFSHLNQLQVLILSHNQLTYISPGAFNGLTNLRELSLHTNALQDLDSNVFRSLANL 367

Query:   313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
             + + L  N+L  L   +F N+  L+ ++L N  L  L   +F       +L ELRL  NP
Sbjct:   368 QNISLQSNRLRQLPGSIFANVNGLTTIQLQNNNLENLPLGIFDH---LVNLCELRLYDNP 424

GO:0005622 "intracellular" evidence=IDA

GO:0007154 "cell communication" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1921738 Lrrc15 "leucine rich repeat containing 15" [Mus musculus (taxid:10090)]

 Score = 322 (118.4 bits), Expect = 5.3e-26, P = 5.3e-26
 Identities = 110/360 (30%), Positives = 161/360 (44%)

Query:    14 LDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
             L+   LI + +  N +  +  GAF    SL +L +    L  +  + F ++  L  L LS
Sbjct:    74 LNISALIALKMEKNELANIMPGAFRNLGSLRHLSLANNKLKNLPVRLFQDVNNLETLLLS 133

Query:    73 GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
              N L  I+P  F   ++L+ L L   NL YI    FD+L  L  L L  N   +H+    
Sbjct:   134 NNQLVQIQPAQFSQFSNLKELQLYGNNLEYIPEGVFDHLVGLTKLNLGNNGF-THLS-PR 191

Query:   133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
             V  +LG L  L L ++ +S++P   F     L+ L L EN++  L     L  N  +L  
Sbjct:   192 VFQHLGNLQVLRLYENRLSDIPMGTFDALGNLQELALQENQIGTLSPG--LFHNNRNLQR 249

Query:   193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
             L LSN H+   L    F+    L  L L GN L      V   P+  L  L L N  ++ 
Sbjct:   250 LYLSNNHISH-LPPGIFMQLPHLNKLTLFGNSLKELSPGV-FGPMPNLRELWLYNNHITS 307

Query:   253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
             LP N F     LQ L +SHN L        + L +L  L +  + LQ +  + F  + +L
Sbjct:   308 LPDNAFSHLNQLQVLILSHNQLSYISPGAFNGLTNLRELSLHTNALQDLDGNVFRSLANL 367

Query:   313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
             + + L  N+L  L   +F N+  L  ++L N  L  L   +F       +L ELRL  NP
Sbjct:   368 RNVSLQNNRLRQLPGSIFANVNGLMTIQLQNNNLENLPLGIFDH---LGNLCELRLYDNP 424

GO:0005622 "intracellular" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P35858 IGFALS "Insulin-like growth factor-binding protein complex acid labile subunit" [Homo sapiens (taxid:9606)]

 Score = 309 (113.8 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
 Identities = 108/330 (32%), Positives = 162/330 (49%)

Query:    45 LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
             L++    LS + P  F NL++L  L+L G  L  +EP     L +L +L L R  L  ++
Sbjct:    79 LWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLA 138

Query:   105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
                F +   L +L LS N+L S ++  L  G LG L  L+L  + ++ LPD  F     L
Sbjct:   139 LGTFAHTPALASLGLSNNRL-SRLEDGLFEG-LGSLWDLNLGWNSLAVLPDAAFRGLGSL 196

Query:   165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
             R L LA N L  L  A   G  L  L  LDLS   L+  +  + FV   +L+ LYL  N 
Sbjct:   197 RELVLAGNRLAYLQPALFSG--LAELRELDLSRNALRA-IKANVFVQLPRLQKLYLDRN- 252

Query:   225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSP 284
             L AA    A   L  L  L L +  ++ L  +TF     L+ L +SHN +          
Sbjct:   253 LIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKD 312

Query:   285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN-N 343
             L  LE L +G++ +++++  +F  +  L+ L L  N+L+ +++G F  LT+++V+ L+ N
Sbjct:   313 LHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGN 372

Query:   344 CGLTRLNETVFHENYTYPDLEELRLSGNPL 373
             C L  L E VF        L  L L G+ L
Sbjct:   373 C-LRNLPEQVFRG---LGKLHSLHLEGSCL 398

GO:0007155 "cell adhesion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005576 "extracellular region" evidence=NAS;TAS

GO:0005520 "insulin-like growth factor binding" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1NI07 IGFALS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 3.0e-24, P = 3.0e-24
 Identities = 115/375 (30%), Positives = 168/375 (44%)

Query:     2 WQGHPVYNDRRNLDNPGLITINLNANPIQPVEGA-FLVARSLLYLYMQECTLSKINPQFF 60
             W    V  D+   D P L  + L  N +  ++   F     L  L +    L  I    F
Sbjct:   174 WNSLVVLPDKVFHDLPNLRELILAGNKLPYLQHQLFCSLTELKELDLSGNALKGIKINIF 233

Query:    61 TNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120
               L  L KL L+ N +  I P  F  + SL +L L+   LT +    F  L  L  L LS
Sbjct:   234 VKLQKLQKLYLNNNQINAIAPRAFMGMKSLRWLDLSHNRLTSLYEDTFLGLLSLHVLRLS 293

Query:   121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
              N + S    T    +L  L+ L L  + I +L +  F     L  L+L  N+L D+   
Sbjct:   294 TNSITSLRPRTFK--DLQFLEELQLGHNRIWSLAERTFDGLGQLEVLSLNNNQLQDIKAG 351

Query:   181 TTLGQNLVHLDSLDLS-NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK 239
               LG  L ++  + LS NC +K  L E  F   TKL +L+L  + LS    +     LT 
Sbjct:   352 AFLG--LYNVAVMHLSANC-IK-TLPEYVFEGVTKLHSLHLEHSCLSKIRANT-FSSLTS 406

Query:   240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
             L RL L++  +S +   +F     L ELD+ HN L      L   L +LE+L + ++ + 
Sbjct:   407 LRRLFLQHNAISTIEDQSFRELHELLELDLKHNRLSHLSPQLFVGLSNLEYLFLSFNQIM 466

Query:   300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
              IS++TF  +  L  L LS N+L TL++ +   L +L  L L N  L   +      ++T
Sbjct:   467 DISQNTFSPLRRLFWLDLSHNQLATLDNAVITQLANLRYLSLRNNSLETFSVGFLCPSFT 526

Query:   360 YPDLEELRLSGNPLH 374
                LE+L L GN  H
Sbjct:   527 ---LEQLWLGGNNWH 538

GO:0005634 "nucleus" evidence=IEA

WB|WBGene00022129 lron-11 [Caenorhabditis elegans (taxid:6239)]

 Score = 296 (109.3 bits), Expect = 8.5e-24, Sum P(2) = 8.5e-24
 Identities = 95/324 (29%), Positives = 162/324 (50%)

Query:    52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
             +S+++    +    L +L L  N +  +   VF  L SL  L L+  +L  +    F  L
Sbjct:    58 ISRLSADELSLYPNLEQLILHNNSITHLSADVFSTLPSLRVLDLSSNSLLSLPNEVFSKL 117

Query:   112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAE 171
              +LKTL +S N ++   +       L +L TL +  + +S LP +V    + LRNL+L+ 
Sbjct:   118 KNLKTLIISSNDVQLGPE---CFAGLSQLQTLSIADNRLSFLPPSVLKPLSGLRNLDLSA 174

Query:   172 NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLS 231
             N+L+ +  +     NL  L++L L   +L   L    F++  +L+ L +S N +   +  
Sbjct:   175 NKLLSMPASVM--NNLGGLETLKLKQ-NLLSSLETGMFLSQKELKHLDVSENLIGDIEEG 231

Query:   232 VALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291
              AL  L KL  L+L N  L RLP NT+     L+ LD+S N  +   TA    L +L++L
Sbjct:   232 -ALYGLEKLETLNLTNNQLVRLPGNTWS-LPALKTLDLSSNLFVSLETASFDGLPALQYL 289

Query:   292 DMGYS-NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
             ++ +S NL+ I  +TF++++SL  L +S + L  +    F  +  LS L+L+N  L  + 
Sbjct:   290 NISHSRNLKTIQMATFVQLSSLHWLSISSSALTHIHPSAFNPIPPLSHLDLSNNELRYVA 349

Query:   351 ETVFHENYTYPDLEELRLSGNPLH 374
               +      +P++  L L+ N  H
Sbjct:   350 PGMLQ----WPNIRNLHLANNDWH 369

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0028888 CG4168 [Drosophila melanogaster (taxid:7227)]

 Score = 313 (115.2 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
 Identities = 135/493 (27%), Positives = 220/493 (44%)

Query:    11 RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLT-TLNKL 69
             ++N  +  L  +NL  N +  +  A   A  + +L +    +S+++P  F  LT TL  L
Sbjct:   471 QQNYSDVHLRALNLEQNFVTQLPEAVFKATGIAHLVLAFNAISRVHPSAFEGLTETLEYL 530

Query:    70 DLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS--PSAFDNLNHLKTLELSQNKLKSH 127
             DL  N L  + P     L  L+YL L    ++ ++  PS  +NL   + L LS N   S 
Sbjct:   531 DLERNRLTTV-PVALSSLHHLKYLYLTSNQISQLNNLPSFTENL---RVLSLSGNNF-SM 585

Query:   128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLN---LAENELIDLDVATTLG 184
             I   L L N  +L  L++  + I+++P+ +FA ++W  NL    L  N++  L + +  G
Sbjct:   586 IP-VLGLKNYTQLSYLNMGYNSITDIPEGIFAVDSWGSNLQTILLRNNKITHLHLGSFAG 644

Query:   185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATK-LRTLYLS-----GNPLSAADLSVALKPLT 238
                +   SL  ++  +  PL    F N ++ L+ L LS        L + D   AL PL+
Sbjct:   645 LEQIQEISLSFNDITIHHPL---VFENVSRTLKILELSFAVFPARSLESLDPLDALLPLS 701

Query:   239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALL-SPLES-LEHLDMGYS 296
             +L  L L N  L ++   +F +   L  +++S N L      L  S   S L  +D+ Y+
Sbjct:   702 QLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQLKTLPRGLFQSDAHSHLVEIDLSYN 761

Query:   297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
              L+R+   TF  +  L+TL L  N+L T+    F NL  L  L+L+   L  ++   F  
Sbjct:   762 GLERLEAQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFT- 820

Query:   357 NYTYPDLEELRLSGNPLHVLPDSTKQY-SMRTIPTQIWKNFDFLVILFILNETVFHENYT 415
                 P+L  L L  N L  L   +  Y S  T P ++  N     I    +E     +Y 
Sbjct:   821 --VLPNLAALDLMHNQLCSLSLKSFLYVSNTTTPLRL--NVSHNHIASFYDEL---SSYM 873

Query:   416 YPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLA 475
             Y  + +L +S N  HV  + +                 ++  L  + F +   +  LN+A
Sbjct:   874 Y--IYQLDISHN--HVTKSDSFTNLANTLRFLNLAHN-QLGSLQSHAFGDLEFLEILNVA 928

Query:   476 NNNLSMTSELSFQ 488
             +NNL+     SFQ
Sbjct:   929 HNNLTSLRRRSFQ 941

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

RGD|1308146 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 295 (108.9 bits), Expect = 5.8e-23, P = 5.8e-23
 Identities = 141/461 (30%), Positives = 205/461 (44%)

Query:    19 LITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
             L  + L +N +Q  P E   LV  +L+ L + E +L+ + P    NL  L  LDL  N L
Sbjct:   125 LTELYLYSNKLQSLPAEVGCLV--NLMTLALSENSLTSL-PDSLDNLKKLRMLDLRHNKL 181

Query:    77 RIIEPGVF--DPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
             R I   V+  D LT+L YL  NR  +T +      NL  L TL + +NK+K        +
Sbjct:   182 REIPSVVYRLDSLTTL-YLRFNR--ITAVEKDV-RNLPRLSTLSIRENKIKQ---LPAEI 234

Query:   135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             G L  L TLD+  + + +LP  +  N T + NL+L  NEL+DL    T+G NL  L+ L 
Sbjct:   235 GELCNLITLDVAHNQLEHLPKEI-GNCTQITNLDLQHNELLDLP--DTIG-NLSSLNRLG 290

Query:   195 LSNCHLKG-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL-RNCGLSR 252
             L    L   P S       + L  L L  N +S    S+ L  L KL+ L+L RNC    
Sbjct:   291 LRYNRLSAIPRS---LAKCSALEELNLENNNISTLPESL-LSSLVKLNSLTLARNC-FQL 345

Query:   253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
              P     +F+ +  L++ HN +      + S  + L  L+M  + L  +    F   TS+
Sbjct:   346 YPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLD-FGTWTSM 404

Query:   313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFH-ENYTYPDLEELRLSGN 371
               L L+ N+L  +   +   L  L VL L+N  L +L   + +       DLEE +L   
Sbjct:   405 VELNLATNQLTKIPEDV-SGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESL 463

Query:   372 PLHV--LPDSTK----QYSMRTIPTQIWKNFDFLVILFILNETVFH---ENYTYPDLEEL 422
             P  +  L D  K       + T+P  I  +   L  L +    + H   E  T  +LEEL
Sbjct:   464 PNEIAYLKDLQKLVLTNNQLTTLPRGIG-HLTNLTHLGLGENLLTHLPEEIGTLENLEEL 522

Query:   423 RLSGNP-LHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNV 462
              L+ NP LH LP                   C + +LPP +
Sbjct:   523 YLNDNPNLHSLP---FELALCSKLSIMSIENCPLSHLPPQI 560

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISO;ISS

UNIPROTKB|E2R260 SHOC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 295 (108.9 bits), Expect = 5.8e-23, P = 5.8e-23
 Identities = 141/461 (30%), Positives = 205/461 (44%)

Query:    19 LITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
             L  + L +N +Q  P E   LV  +L+ L + E +L+ + P    NL  L  LDL  N L
Sbjct:   125 LTELYLYSNKLQSLPAEVGCLV--NLMTLALNENSLTSL-PDSLDNLKKLRMLDLRHNKL 181

Query:    77 RIIEPGVF--DPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
             R I   V+  D LT+L YL  NR  +T +      NL+ L  L + +NK+K        +
Sbjct:   182 REIPSVVYRLDSLTTL-YLRFNR--ITTVEKD-IKNLSKLSMLSIRENKIKQ---LPAEI 234

Query:   135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             G L  L TLD+  + + +LP  +  N T + NL+L  NEL+DL    T+G NL  L  L 
Sbjct:   235 GELCNLITLDVAHNQLEHLPKEI-GNCTQITNLDLQHNELLDLP--DTIG-NLSSLSRLG 290

Query:   195 LSNCHLKG-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL-RNCGLSR 252
             L    L   P S       + L  L L  N +SA   S+ L  L KL+ L+L RNC    
Sbjct:   291 LRYNRLSAIPRS---LAKCSALEELNLENNNISALPESL-LSSLVKLNSLTLARNC-FQL 345

Query:   253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
              P     +F+ +  L++ HN +      + S  + L  L+M  + L  +    F   TS+
Sbjct:   346 YPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLD-FGTWTSM 404

Query:   313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFH-ENYTYPDLEELRLSGN 371
               L L+ N+L  +   +   L  L VL L+N  L +L   + +       DLEE +L   
Sbjct:   405 VELNLATNQLTKIPEDV-SGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESL 463

Query:   372 PLHV--LPDSTK----QYSMRTIPTQIWKNFDFLVILFILNETVFH---ENYTYPDLEEL 422
             P  +  L D  K       + T+P  I  +   L  L +    + H   E  T  +LEEL
Sbjct:   464 PNEIAYLKDLQKLVLTNNQLTTLPRGIG-HLTNLTHLGLGENLLTHLPEEIGTLENLEEL 522

Query:   423 RLSGNP-LHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNV 462
              L+ NP LH LP                   C + +LPP +
Sbjct:   523 YLNDNPNLHSLP---FELALCSKLSIMSIENCPLSHLPPQI 560

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

UNIPROTKB|P22792 CPN2 "Carboxypeptidase N subunit 2" [Homo sapiens (taxid:9606)]

 Score = 292 (107.8 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 103/331 (31%), Positives = 152/331 (45%)

Query:    42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
             +++L  Q C   +  P  F  L  L  L+++G+    +   +F  LTSL  L LN   L 
Sbjct:    78 VVFLNTQLC---QFRPDAFGGLPRLEDLEVTGSSFLNLSTNIFSNLTSLGKLTLNFNMLE 134

Query:   102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN 161
              +    F +L  L++L L  N+L++ +   L    L  L TL+L Q+ ++ LP+ +F   
Sbjct:   135 ALPEGLFQHLAALESLHLQGNQLQA-LPRRL-FQPLTHLKTLNLAQNLLAQLPEELFHPL 192

Query:   162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS 221
             T L+ L L+ N L  L      G+ L  L  L L + ++   L    F     L  L+L 
Sbjct:   193 TSLQTLKLSNNALSGLPQGV-FGK-LGSLQELFLDSNNIS-ELPPQVFSQLFCLERLWLQ 249

Query:   222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL 281
              N ++   LS+    L  L  LSL+   L  LPA  F    CL  L ++HN L       
Sbjct:   250 RNAITHLPLSI-FASLGNLTFLSLQWNMLRVLPAGLFAHTPCLVGLSLTHNQLETVAEGT 308

Query:   282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
              + L +L  L + Y+ +  +    F  +  L  L L  N L  L   LFQNL+ L +L L
Sbjct:   309 FAHLSNLRSLMLSYNAITHLPAGIFRDLEELVKLYLGSNNLTALHPALFQNLSKLELLSL 368

Query:   342 NNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
             +   LT L E +F  NY   +L  L L GNP
Sbjct:   369 SKNQLTTLPEGIFDTNY---NLFNLALHGNP 396

GO:0050821 "protein stabilization" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	694
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-12
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-11
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-10
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-08
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	0.001
TIGR00864	2740	TIGR00864, PCC, polycystin cation channel protein	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.003
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	0.003

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 71/291 (24%), Positives = 97/291 (33%), Gaps = 53/291 (18%)

Query: 83  VFDPLTSLEYLMLNRCNLTYISPSA-FDNLNH---LKTLELSQNKLKSHIDWTLVLG--- 135
           +   L  L+ L L    L   +  A    L     LK L LS N+          L    
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 136 -NLGKLDTLDLRQSGISNLPDNV-----FANNTWLRNLNLAENELIDLD---VATTLGQN 186
                L  LDL  + +   PD          ++ L+ L L  N L D     +A  L   
Sbjct: 78  TKGCGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL 135

Query: 187 LVHLDSLDLSNCHLKGPLSED---AFVNATKLRTLYLSGNPLS---AADLSVALKPLTKL 240
              L+ L L    L+G   E    A      L+ L L+ N +       L+  LK    L
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195

Query: 241 HRLSLRNCGL----SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
             L L N GL    +   A T      L+ L++  N L DA  A L    +L   +    
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL--ASALLSPN---- 249

Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLE-----TLESGLFQNLTHLSVLELN 342
                         SL TL LS N +       L   L +  + L  L+L 
Sbjct: 250 -------------ISLLTLSLSCNDITDDGAKDLAEVLAEKESLL-ELDLR 286

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.1 bits (169), Expect = 5e-12
 Identities = 136/525 (25%), Positives = 201/525 (38%), Gaps = 77/525 (14%)

Query: 17  PGLITINLNANPIQ-PVEGA-FLVARSLLYLYMQECTLSKINPQ-FFTNLTTLNK----- 68
           P + TINL+ N +  P+    F  + SL YL +     +   P+    NL TL+      
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML 152

Query: 69  ----------------LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLN 112
                           LDL GN L    P     LTSLE+L L    L    P     + 
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212

Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
            LK + L  N L   I +   +G L  L+ LDL  + ++    +   N   L+ L L +N
Sbjct: 213 SLKWIYLGYNNLSGEIPYE--IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
           +L      +     L  L SLDLS+  L G + E   +    L  L+L  N  +   + V
Sbjct: 271 KLSGPIPPSIFS--LQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGK-IPV 326

Query: 233 ALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291
           AL  L +L  L L +   S  +P N   +   L  LD+S N L       L    +L  L
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385

Query: 292 DMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT-RLN 350
            +  ++L+     +     SL+ + L  N         F  L  +  L+++N  L  R+N
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445

Query: 351 ETVFHENYTYPDLEELRLSGNP-LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETV 409
                  +  P L+ L L+ N     LPDS     +  +                     
Sbjct: 446 S----RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL--------------------- 480

Query: 410 FHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNI 469
                   DL   + SG     +P        LS L  L LS  K+    P+  ++ + +
Sbjct: 481 --------DLSRNQFSG----AVPRKLG---SLSELMQLKLSENKLSGEIPDELSSCKKL 525

Query: 470 TSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
            SL+L++N LS     SF  + V   L  LDLS N L+   P  L
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPV---LSQLDLSQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 29/59 (49%), Positives = 36/59 (61%)

Query: 66  LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
           L  LDLS N L +I  G F  L +L+ L L+  NLT ISP AF  L  L++L+LS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 7e-11
 Identities = 116/463 (25%), Positives = 191/463 (41%), Gaps = 64/463 (13%)

Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTWLRNLN 168
           N + + +++LS   +   I  +  +  L  + T++L  + +S  +PD++F  ++ LR LN
Sbjct: 67  NSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
           L+ N        +    ++ +L++LDLSN  L G +  D     + L+ L L GN L   
Sbjct: 125 LSNNNF----TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVG- 178

Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
            +  +L  LT L  L+L +  L         +   L+ + + +N L       +  L SL
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE-TLESGLFQNLTHLSVLELNNCGLT 347
            HLD+ Y+NL     S+   + +L+ L L  NKL   +   +F +L  L  L+L++  L+
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLS 297

Query: 348 -RLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT----QIWKNFDFLVIL 402
             + E V        +LE L L  N            ++ ++P     Q+W N     I 
Sbjct: 298 GEIPELVIQ----LQNLEILHLFSNNF----TGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 403 FILNETVFHENYTYPDLEELRLSGN-PLHVLPTGNL-------------LPPQLSRLRSL 448
             L +   H N T  DL    L+G  P  +  +GNL             +P  L   RSL
Sbjct: 350 KNLGK---HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406

Query: 449 DLSRCKIDYLP---PNVFNNTRNITSLNLANNNLSMTSEL------SFQFLDVLL----- 494
              R + +      P+ F     +  L+++NNNL            S Q L +       
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Query: 495 ---------ELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
                     LE+LDLS N  +   P  L     +  +KL  N
Sbjct: 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 63/262 (24%), Positives = 84/262 (32%), Gaps = 44/262 (16%)

Query: 57  PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLT---SLEYLMLNRCNLTYISPSAF----- 108
            Q  T    L +LDLS N L     GV + L    SL+ L LN   L             
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG-DRGLRLLAKGL 132

Query: 109 -DNLNHLKTLELSQNKL--KSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR 165
            D    L+ L L +N+L   S       L     L  L+L  +GI               
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG-------------- 178

Query: 166 NLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
                +  +  L        NL  LD  +            +   +   L  L L  N L
Sbjct: 179 -----DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233

Query: 226 S---AADLSVALK-PLTKLHRLSLRNCGLSRLPANTFHR----FTCLQELDISHNPLIDA 277
           +   AA L+ AL  P   L  LSL    ++   A            L ELD+  N   + 
Sbjct: 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293

Query: 278 -----FTALLSPLESLEHLDMG 294
                  +LL P   LE L + 
Sbjct: 294 GAQLLAESLLEPGNELESLWVK 315

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.1 bits (148), Expect = 8e-10
 Identities = 94/328 (28%), Positives = 138/328 (42%), Gaps = 24/328 (7%)

Query: 60  FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
             NL  L  LDL+ N LR     +   LT+L  L L+  N+T I P      ++LK L+L
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147

Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
           S NK++S       L NL  L  LDL  + +S+LP  + +N + L NL+L+ N++ DL  
Sbjct: 148 SDNKIESLPSP---LRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPP 203

Query: 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK 239
              L   L  L+ LDLSN  +       +  N   L  L LS N L     S+    L+ 
Sbjct: 204 EIEL---LSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSN 256

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
           L  L L N  +S + +      T L+ELD+S N L +A   +   L  LE        L 
Sbjct: 257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLE-------LLL 307

Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
            +  +       L +++L+ N L   E+   + L+ L  L  N   L    +      Y 
Sbjct: 308 NLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLN-NLWTLDNALDESNLNRYI 366

Query: 360 YPDLEELR--LSGNPLHVLPDSTKQYSM 385
             +   +   L     HV     K    
Sbjct: 367 VKNPNAIGSLLDLVKKHVNQLLEKVNYN 394

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 48/177 (27%), Positives = 63/177 (35%), Gaps = 19/177 (10%)

Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF---HRFTCLQELDISH 271
           L        P     L   L     L  L L +  L            R + LQEL +++
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 272 NPLIDAFT-----ALLSPLESLEHLDMGYSNLQRIS----RSTFLKMTSLKTLILSGNKL 322
           N L D         L     +LE L +G + L+  S             LK L L+ N +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 323 -----ETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY-TYPDLEELRLSGNPL 373
                  L  GL  N  +L VL+LNN GLT    +   E   +   LE L L  N L
Sbjct: 178 GDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
           +L+ LD+  + L  I    F  + +LK L LSGN L ++    F  L  L  L+L+   L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
           L+ L LS N L V+P G      L  L+ LDLS   +  + P  F+   ++ SL+L+ NN
Sbjct: 2   LKSLDLSNNRLTVIPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 479 L 479
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 56.4 bits (136), Expect = 4e-08
 Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 39/322 (12%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
           +L+ L MQ   L K+      +LT L  +DL G+   + E       T+LE L L+ C+ 
Sbjct: 612 NLVKLQMQGSKLEKL-WDGVHSLTGLRNIDLRGSK-NLKEIPDLSMATNLETLKLSDCSS 669

Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG-NLGKLDTLDLRQ-SGISNLPDNVF 158
               PS+   LN L+ L++S+ +   +++  L  G NL  L  L+L   S + + PD + 
Sbjct: 670 LVELPSSIQYLNKLEDLDMSRCE---NLE-ILPTGINLKSLYRLNLSGCSRLKSFPD-IS 724

Query: 159 ANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD-LSNCHLKG--------PLSEDAF 209
            N +WL          +D         NL  L++LD L  C +K         PL+    
Sbjct: 725 TNISWL---------DLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774

Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC-GLSRLPANTFHRFTCLQELD 268
           + +  L  L+LS  P S  +L  +++ L KL  L + NC  L  LP  T      L+ LD
Sbjct: 775 MLSPSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLETLP--TGINLESLESLD 831

Query: 269 ISHNPLIDAFTALLSPLESL-------EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK 321
           +S    +  F  + + +  L       E +         +S        +L+ + L+ +K
Sbjct: 832 LSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891

Query: 322 LETLESGLFQNLTHLSVLELNN 343
           L+ LE+  F +   L+    N 
Sbjct: 892 LKHLETVDFSDCGALTEASWNG 913

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG 370
           +LK+L LS N+L  +  G F+ L +L VL+L+   LT ++   F      P L  L LSG
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL---PSLRSLDLSG 57

Query: 371 NPL 373
           N L
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 68/270 (25%), Positives = 98/270 (36%), Gaps = 55/270 (20%)

Query: 263 CLQELDISHNPL----IDAFTALLSPLESLEHLDMGYSNLQRISRST------FLKMTSL 312
           CLQ L +  N L      A  + L P  SL+ L +  +   RI R          K   L
Sbjct: 24  CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83

Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLE---LNNCGL----TRLNETVFHENYTYPDLEE 365
           + L LS N L     G+ ++L   S L+   LNN GL     RL      +    P LE+
Sbjct: 84  QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP--PALEK 141

Query: 366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLS 425
           L L  N L     S +                 L      N           DL+EL L+
Sbjct: 142 LVLGRNRLEG--ASCEA----------------LAKALRAN----------RDLKELNLA 173

Query: 426 GNPLHVLPTGNLLP--PQLSRLRSLDLSRCKI----DYLPPNVFNNTRNITSLNLANNNL 479
            N +       L         L  LDL+   +             + +++  LNL +NNL
Sbjct: 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233

Query: 480 SM--TSELSFQFLDVLLELESLDLSNNNLT 507
           +    + L+   L   + L +L LS N++T
Sbjct: 234 TDAGAAALASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
            L+SLDLS  ++  +P   F    N+  L+L+ NNL+  S  +F  L     L SLDLS 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS---LRSLDLSG 57

Query: 504 NNL 506
           NNL
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL 322
           L+ LD+S+N L          L +L+ LD+  +NL  IS   F  + SL++L LSGN L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 89  SLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQS 148
           +L+ L L+   LT I   AF  L +LK L+LS N L   I        L  L +LDL  +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPE-AFSGLPSLRSLDLSGN 58

Query: 149 GI 150
            +
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 468 NITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVG 527
           N+ SL+L+NN L++  + +F+ L     L+ LDLS NNLT ISP       ++ S+ L G
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLP---NLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Query: 528 NP 529
           N 
Sbjct: 58  NN 59

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 92/383 (24%), Positives = 146/383 (38%), Gaps = 32/383 (8%)

Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
           +N LKS +    +   L         QS   N PD+   +        +    L      
Sbjct: 5   ENLLKSALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESV------AVNRLALNLSSNT 58

Query: 181 TTLGQN-LVHLDSLDLSNCHLKGPLSE-DAFVNATKLRTLYLSGNPLSAADLSVALKPLT 238
             L  + L  L SLDL +      L   +  +N   L +L L+ N L +      L  LT
Sbjct: 59  LLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNIS--ELLELT 116

Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
            L  L L N  ++ +P       + L+ELD+S N +    + L + L +L++LD+ +++L
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN-LPNLKNLDLSFNDL 175

Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
             + +     +++L  L LSGNK+  L     + L+ L  L+L+N  +  L  ++ +   
Sbjct: 176 SDLPKL-LSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIELLSSLSNLKN 233

Query: 359 TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY--TY 416
               L  L LS N L              +P  I  N   L  L + N  +   +   + 
Sbjct: 234 ----LSGLELSNNKL------------EDLPESI-GNLSNLETLDLSNNQISSISSLGSL 276

Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
            +L EL LSGN L        L   L  L    L   K   L  N      NI S    +
Sbjct: 277 TNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETS 336

Query: 477 NNLSMTSELSFQFLDVLLELESL 499
           +  +++   S   L  L      
Sbjct: 337 SPEALSILESLNNLWTLDNALDE 359

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 24/60 (40%), Positives = 28/60 (46%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
           +L  L +    L+ I    F  L  L  LDLSGN L  I P  F  L SL  L L+  NL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
           L++L+L+ N L  +       + L +L  LDLS  +L   +S +AF     LR+L LSGN
Sbjct: 2   LKSLDLSNNRLTVIPDGAF--KGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGN 58

Query: 224 PL 225
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 17  PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
             L   N N   I P+ G        L L   +        +   NL     LDLS N L
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLK---NLDLSFNDL 175

Query: 77  RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
             +   + + L++L  L L+   ++ + P   + L+ L+ L+LS N +   +     L N
Sbjct: 176 SDLPKLLSN-LSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIELL---SSLSN 230

Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
           L  L  L+L  + + +LP+++  N + L  L+L+ N++  +        +L +L  LDLS
Sbjct: 231 LKNLSGLELSNNKLEDLPESI-GNLSNLETLDLSNNQISSISSLG----SLTNLRELDLS 285

Query: 197 NCHLKGPLSEDA 208
              L   L   A
Sbjct: 286 GNSLSNALPLIA 297

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQ----LSRLRSLDLSRCKIDYLPPNVFNNTRNIT 470
             P L+EL LS N    +P G     Q       L+ LDLS   +      V  +    +
Sbjct: 49  PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS 108

Query: 471 SL---NLANNNLSMTSE--LSFQFLDVLLELESLDLSNNNLTHISPT----VLRHNRAIT 521
           SL    L NN L       L+    D+   LE L L  N L   S       LR NR + 
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168

Query: 522 SIKLVGNP 529
            + L  N 
Sbjct: 169 ELNLANNG 176

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
            L +LDL  + ++ +PD  F     L+ L+L+ N L  +         L  L SLDLS  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAF-SGLPSLRSLDLSGN 58

Query: 199 HL 200
           +L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 39/246 (15%)

Query: 57  PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
           P+   +   L KL L  N L    P       SL  + L   + +   PS F  L  +  
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 117 LELSQNKLKSHID---WTLVLGNLGKLDTLDL-RQSGISNLPDNVFANNTWLRNLNLAEN 172
           L++S N L+  I+   W     ++  L  L L R      LPD+  +    L NL+L+ N
Sbjct: 433 LDISNNNLQGRINSRKW-----DMPSLQMLSLARNKFFGGLPDSFGSKR--LENLDLSRN 485

Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
           +     V   LG +L  L  L LS   L G + ++   +  KL +L LS N LS      
Sbjct: 486 QFSGA-VPRKLG-SLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSG----- 537

Query: 233 ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD 292
                              ++PA +F     L +LD+S N L       L  +ESL  ++
Sbjct: 538 -------------------QIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577

Query: 293 MGYSNL 298
           + +++L
Sbjct: 578 ISHNHL 583

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 26/86 (30%)

Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
           +L SLDLSN  L   + + AF     L+ L LSGN                         
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNN------------------------ 35

Query: 249 GLSRLPANTFHRFTCLQELDISHNPL 274
            L+ +    F     L+ LD+S N L
Sbjct: 36  -LTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 25/80 (31%), Positives = 39/80 (48%)

Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           L L N GL     N   +   LQ +++S N +       L  + SLE LD+ Y++     
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 303 RSTFLKMTSLKTLILSGNKL 322
             +  ++TSL+ L L+GN L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 35/177 (19%)

Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC- 198
           L+ L+L    IS+ P +  +N   L+ L L  ++LID +    L Q+  +L  LDL  C 
Sbjct: 30  LEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACE 89

Query: 199 ------------------------HLKGPLSEDAFV-----NATKLRTLYLSGNPLSAAD 229
                                   H  G L  D  +     N T L+T+  +G  ++   
Sbjct: 90  NITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKG 149

Query: 230 L-SVALKPLTKLHRLSLRNCGL---SRLPAN-TFHRFTCLQELDISHNPLIDAFTAL 281
           +  +A      L RLSL NC       +PA    + F  L  L+    PLI  F+ +
Sbjct: 150 VWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLITDFSRI 206

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKG 548
           D+SNN ++ I   +  +   ++ I L GNP++CDC +A +  WA  EKG
Sbjct: 1   DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWA-EEKG 48

The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half for technical reasons. Length = 2740

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
           +LK+L+LS N+L   I        L  L  LDL  + ++++    F+    LR+L+L+ N
Sbjct: 1   NLKSLDLSNNRLT-VIPDG-AFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 173 EL 174
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 87/305 (28%), Positives = 128/305 (41%), Gaps = 44/305 (14%)

Query: 105 PSAFDNLNH-LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
           P  FD L   L+ L   +  L+  +       NL KL    ++ S +  L D V +  T 
Sbjct: 581 PEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQ---MQGSKLEKLWDGVHSL-TG 635

Query: 164 LRNLNL--AEN--ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
           LRN++L  ++N  E+ DL +AT       +L++L LS+C     L   +     KL  L 
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMAT-------NLETLKLSDCSSLVELPS-SIQYLNKLEDLD 687

Query: 220 LSG-NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF-TCLQELDISHNPLIDA 277
           +S    L      + LK    L+RL+L  C  SRL   +F    T +  LD+    + + 
Sbjct: 688 MSRCENLEILPTGINLK---SLYRLNLSGC--SRL--KSFPDISTNISWLDLDETAIEEF 740

Query: 278 FTALLSPLESLEHLDMGYSNLQRI-----SRSTFLKMT--SLKTLILSGN-KLETLESGL 329
            + L   LE+L+ L +     +++       +  + M   SL  L LS    L  L S  
Sbjct: 741 PSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS- 797

Query: 330 FQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG-NPLHVLPD-STKQYSMRT 387
            QNL  L  LE+ NC    +N            LE L LSG + L   PD ST    +  
Sbjct: 798 IQNLHKLEHLEIENC----INLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNL 853

Query: 388 IPTQI 392
             T I
Sbjct: 854 SRTGI 858

syringae 6; Provisional. Length = 1153

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 51  TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDN 110
           +++ I    F+  T+L  + L  + L  I    F   +SL  + +   +LT I   AF N
Sbjct: 21  SVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIP-SSLTSIGEYAFSN 78

Query: 111 LNHLKTLELSQN 122
            + L ++ +  N
Sbjct: 79  CSSLTSITIPSN 90

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	694
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194|consensus	873		100.0
KOG4194|consensus	873		100.0
KOG0472|consensus	565		100.0
KOG0472|consensus	565		100.0
KOG0618|consensus	1081		99.97
KOG0618|consensus	1081		99.96
KOG0444|consensus	1255		99.96
KOG4237|consensus	498		99.96
KOG4237|consensus	498		99.96
KOG0444|consensus	1255		99.96
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617|consensus	264		99.5
KOG0617|consensus	264		99.5
KOG3207|consensus	505		99.3
KOG3207|consensus	505		99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
KOG1909|consensus	382		99.24
KOG1909|consensus	382		99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
PLN03150	623	hypothetical protein; Provisional	99.12
KOG1259|consensus	490		99.1
KOG1259|consensus	490		99.05
KOG0532|consensus	722		99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
KOG0531|consensus	414		98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG0531|consensus	414		98.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.91
KOG4658|consensus	889		98.89
KOG4658|consensus	889		98.89
KOG0532|consensus	722		98.88
PLN03150	623	hypothetical protein; Provisional	98.72
KOG2120|consensus	419		98.62
KOG2982|consensus	418		98.56
KOG2120|consensus	419		98.55
KOG2982|consensus	418		98.46
KOG1859|consensus	1096		98.46
KOG4341|consensus	483		98.41
KOG4341|consensus	483		98.38
KOG1859|consensus	1096		98.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.18
KOG1644|consensus	233		98.11
KOG1644|consensus	233		98.07
KOG4579|consensus	177		98.01
KOG1187|consensus	361		97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
KOG4579|consensus	177		97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG3665|consensus	699		97.87
KOG3665|consensus	699		97.69
PRK15386	426	type III secretion protein GogB; Provisional	97.58
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.57
PRK15386	426	type III secretion protein GogB; Provisional	97.57
KOG1947|consensus	482		97.35
KOG2123|consensus	388		97.27
KOG2739|consensus	260		97.2
KOG2739|consensus	260		97.17
KOG2123|consensus	388		97.16
KOG1947|consensus	482		97.03
KOG3653|consensus	534		96.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.42
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	94.7
KOG0193|consensus	678		94.34
KOG4236|consensus	888		94.22
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.62
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	93.47
smart00370	26	LRR Leucine-rich repeats, outliers.	93.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.28
PLN03224	507	probable serine/threonine protein kinase; Provisio	93.21
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	92.88
KOG0473|consensus	326		92.73
KOG4308|consensus	478		91.84
PRK09188	365	serine/threonine protein kinase; Provisional	91.52
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.48
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	91.39
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.36
smart00370	26	LRR Leucine-rich repeats, outliers.	91.36
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	91.24
KOG2052|consensus	513		91.24
KOG4308|consensus	478		90.83
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	90.74
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	90.5
KOG4250|consensus	732		90.23
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	89.99
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	89.99
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	89.96
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	89.79
PLN00034	353	mitogen-activated protein kinase kinase; Provision	89.6
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	89.54
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	89.47
KOG0597|consensus	808		89.43
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	89.35
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	89.32
KOG1026|consensus	774		89.28
KOG0192|consensus	362		89.19
KOG3864|consensus	221		89.05
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	88.67
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	88.55
PTZ00283	496	serine/threonine protein kinase; Provisional	88.35
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	88.34
KOG3864|consensus	221		88.1
KOG0575|consensus	592		88.1
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	87.96
KOG0658|consensus	364		87.94
KOG0580|consensus	281		87.9
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	87.89
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	87.74
KOG0473|consensus	326		87.56
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	87.5
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	87.45
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	87.36
PHA02882	294	putative serine/threonine kinase; Provisional	87.05
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	86.91
KOG0595|consensus	429		86.59
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	86.53
PTZ00284	467	protein kinase; Provisional	86.36
KOG1027|consensus	903		86.13
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	86.03
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	85.81
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	85.77
smart00090	237	RIO RIO-like kinase.	85.7
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	85.49
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	85.14
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	85.03
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	84.84
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	84.82
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	84.66
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	84.45
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	84.41
KOG0591|consensus	375		84.26
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	84.18
KOG4257|consensus	974		84.07
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	83.91
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	83.53
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	83.51
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	83.36
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	83.34
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	83.26
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	83.07
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	83.04
PTZ00036	440	glycogen synthase kinase; Provisional	82.97
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	82.84
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	82.42
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	82.37
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	82.32
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	82.05
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	82.05
KOG0661|consensus	538		81.98
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.96
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	81.46
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	81.44
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	81.36
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	81.24
KOG1095|consensus	1025		81.24
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	81.22
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	81.18
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	81.1
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	80.99
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	80.98
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	80.97
KOG0667|consensus	586		80.88
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	80.84
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	80.81
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	80.62
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	80.61
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	80.54
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	80.41
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	80.38
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	80.34
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	80.31
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	80.27
PTZ00263	329	protein kinase A catalytic subunit; Provisional	80.24
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	80.17
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	80.1
KOG0659|consensus	318		80.08

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.6e-54  Score=504.64  Aligned_cols=498  Identities=26%  Similarity=0.283  Sum_probs=403.2

Q ss_pred             cccCCCCCceEEECcCCCCc-chh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCC
Q psy3329          11 RRNLDNPGLITINLNANPIQ-PVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLT   88 (694)
Q Consensus        11 ~~~~~~~~L~~L~Ls~~~l~-~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~   88 (694)
                      ..|..+++|+.|+|++|.+. .+| ..+..+++|++|++++|.+.+..|.  ..+++|++|++++|.+.+..+..++.++
T Consensus        87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         87 SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCC
Confidence            45677889999999999887 678 4455889999999999888766553  5678899999999998877777788999


Q ss_pred             CCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEe
Q psy3329          89 SLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLN  168 (694)
Q Consensus        89 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  168 (694)
                      +|++|++++|.+.+..|..+.++++|++|++++|.+..  .+|..++++++|++|++++|.+.+..+..+.++++|++|+
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG--QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC--cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            99999999999988888889999999999999998873  5567888999999999999998877777888999999999


Q ss_pred             CCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCc
Q psy3329         169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC  248 (694)
Q Consensus       169 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  248 (694)
                      +++|.+.+.....+ . .+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+....+. .+..+++|+.|++++|
T Consensus       243 L~~n~l~~~~p~~l-~-~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n  318 (968)
T PLN00113        243 LVYNNLTGPIPSSL-G-NLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSN  318 (968)
T ss_pred             CcCceeccccChhH-h-CCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCC
Confidence            99998765333222 2 788899999999988776664 477888999999998888765443 3577888999999999


Q ss_pred             CCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCch
Q psy3329         249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESG  328 (694)
Q Consensus       249 ~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  328 (694)
                      .+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus       319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~  398 (968)
T PLN00113        319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK  398 (968)
T ss_pred             ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence            88877777788888999999999988888888888888899999998888877777788888888888888888877777


Q ss_pred             hhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcc-
Q psy3329         329 LFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNE-  407 (694)
Q Consensus       329 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~-  407 (694)
                      .+..+++|+.|++++|.+++..+..|.   .++.|+.|++++|.++.....           ..+ .+..+..+..... 
T Consensus       399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~~~-----------~~~-~l~~L~~L~L~~n~  463 (968)
T PLN00113        399 SLGACRSLRRVRLQDNSFSGELPSEFT---KLPLVYFLDISNNNLQGRINS-----------RKW-DMPSLQMLSLARNK  463 (968)
T ss_pred             HHhCCCCCCEEECcCCEeeeECChhHh---cCCCCCEEECcCCcccCccCh-----------hhc-cCCCCcEEECcCce
Confidence            788888888888888888875555565   678888888888887653321           100 0000000000000 


Q ss_pred             --cccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcch
Q psy3329         408 --TVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSEL  485 (694)
Q Consensus       408 --~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  485 (694)
                        .........++|+.|++++|.+++..+..+  ..+++|+.|+|++|.+++..|..+.++++|++|+|++|.+++.+|.
T Consensus       464 ~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  541 (968)
T PLN00113        464 FFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL--GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA  541 (968)
T ss_pred             eeeecCcccccccceEEECcCCccCCccChhh--hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence              001111125789999999999999988888  8899999999999999998888899999999999999999999999


Q ss_pred             hhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCc
Q psy3329         486 SFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNI  536 (694)
Q Consensus       486 ~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~  536 (694)
                      .|   ..+++|+.|+|++|++++.+|..+..+++|+.+++++|++.+.+|.
T Consensus       542 ~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        542 SF---SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             hH---hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            88   8899999999999999999999999999999999999999987764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-47  Score=450.71  Aligned_cols=491  Identities=24%  Similarity=0.246  Sum_probs=406.5

Q ss_pred             ccCCCCCceEEECcCCCCc-chhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC
Q psy3329          12 RNLDNPGLITINLNANPIQ-PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL   90 (694)
Q Consensus        12 ~~~~~~~L~~L~Ls~~~l~-~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L   90 (694)
                      .|..+++|++|+|++|.++ .+|.  ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|
T Consensus       113 ~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  190 (968)
T PLN00113        113 IFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL  190 (968)
T ss_pred             HhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence            4568899999999999987 4553  457899999999999988888889999999999999999987778789999999


Q ss_pred             CEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCC
Q psy3329          91 EYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA  170 (694)
Q Consensus        91 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  170 (694)
                      ++|++++|.+.+..|..++++++|+.|++++|.+..  .+|..++++++|++|++++|.+.+..+..+.++++|++|+++
T Consensus       191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC--cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence            999999999998889999999999999999998873  566788999999999999999988777889999999999999


Q ss_pred             CCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCC
Q psy3329         171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL  250 (694)
Q Consensus       171 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i  250 (694)
                      +|.+.+.....+.  .+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+
T Consensus       269 ~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        269 QNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             CCeeeccCchhHh--hccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCC
Confidence            9988754322222  688999999999998777664 578899999999999988766543 357889999999999999


Q ss_pred             CcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhh
Q psy3329         251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF  330 (694)
Q Consensus       251 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  330 (694)
                      .+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+
T Consensus       345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~  424 (968)
T PLN00113        345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF  424 (968)
T ss_pred             cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence            87666778888999999999999998888888888999999999999988888888899999999999999988888888


Q ss_pred             cCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCc-ccccccccccchhccccchhhhhh-hh---
Q psy3329         331 QNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS-TKQYSMRTIPTQIWKNFDFLVILF-IL---  405 (694)
Q Consensus       331 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~ip~~~~~~~~~l~~~~-~~---  405 (694)
                      ..++.|+.|++++|.+++..+..+.   .+++|+.|++++|++....+. .....+           ..+.... .+   
T Consensus       425 ~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~n~~~~~~p~~~~~~~L-----------~~L~ls~n~l~~~  490 (968)
T PLN00113        425 TKLPLVYFLDISNNNLQGRINSRKW---DMPSLQMLSLARNKFFGGLPDSFGSKRL-----------ENLDLSRNQFSGA  490 (968)
T ss_pred             hcCCCCCEEECcCCcccCccChhhc---cCCCCcEEECcCceeeeecCcccccccc-----------eEEECcCCccCCc
Confidence            8899999999999998886665554   678899999999887632211 000000           0000000 00   


Q ss_pred             cccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcch
Q psy3329         406 NETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSEL  485 (694)
Q Consensus       406 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  485 (694)
                      ....+..   +++|+.|++++|.+.+..|..+  ..+++|+.|+|++|.+++.+|..|.++++|+.|+|++|++++.+|.
T Consensus       491 ~~~~~~~---l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        491 VPRKLGS---LSELMQLKLSENKLSGEIPDEL--SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             cChhhhh---hhccCEEECcCCcceeeCChHH--cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence            0011233   7899999999999999998888  8999999999999999999999999999999999999999999998


Q ss_pred             hhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccc
Q psy3329         486 SFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCD  533 (694)
Q Consensus       486 ~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~  533 (694)
                      .+   ..++.|+.|++++|++.+.+|.. ..+..+....+.+|+..|.
T Consensus       566 ~l---~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~  609 (968)
T PLN00113        566 NL---GNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCG  609 (968)
T ss_pred             hH---hcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccC
Confidence            88   88999999999999999987753 3344566677889998885

>KOG4194|consensus

Probab=100.00  E-value=1.9e-49  Score=393.24  Aligned_cols=445  Identities=27%  Similarity=0.369  Sum_probs=267.2

Q ss_pred             EECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCC
Q psy3329          69 LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQS  148 (694)
Q Consensus        69 L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  148 (694)
                      |++++|+++.+....|.++++|+.+++..|.++.+ |.......+|+.|+|.+|.|..+..  ..+..++.|+.|||+.|
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~L~~N~I~sv~s--e~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLDLRHNLISSVTS--EELSALPALRSLDLSRN  159 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhhhc-ccccccccceeEEeeeccccccccH--HHHHhHhhhhhhhhhhc
Confidence            55555555544444445555555555555555444 2222222335555555555544333  34444555555555555


Q ss_pred             CCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCcc
Q psy3329         149 GISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA  228 (694)
Q Consensus       149 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  228 (694)
                      .|+.++...|..-.++++|+|++|.|+++....|.  .+.+|..|.|+.|++ ..+|...|.++++|+.|+|..|.+...
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeecccccccccccccc--ccchheeeecccCcc-cccCHHHhhhcchhhhhhccccceeee
Confidence            55555555555555555555555555555444443  344555666666665 556666677777777777777776655


Q ss_pred             chhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcC
Q psy3329         229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK  308 (694)
Q Consensus       229 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  308 (694)
                      ... .+.++++|+.|.+..|+|..+...+|..+.++++|+|+.|++...-..++.+++.|+.|+|+.|.|..+....+..
T Consensus       237 e~l-tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  237 EGL-TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhh-hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            433 3477777777777777777777777777777777777777777766667777777777777777777777777777


Q ss_pred             CCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccc
Q psy3329         309 MTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTI  388 (694)
Q Consensus       309 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~i  388 (694)
                      +++|+.|+|+.|+|+.++++.|..+..|++|+|+.|.++.+....|.   .+.+|++|||++|.+....+          
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~---~lssL~~LdLr~N~ls~~IE----------  382 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV---GLSSLHKLDLRSNELSWCIE----------  382 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH---HhhhhhhhcCcCCeEEEEEe----------
Confidence            77777777777777777777777677777777777766666665554   44444444444444321100          


Q ss_pred             cchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCC
Q psy3329         389 PTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRN  468 (694)
Q Consensus       389 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  468 (694)
                                                                . ....|  .++++|+.|+|.+|+|..++..+|.    
T Consensus       383 ------------------------------------------D-aa~~f--~gl~~LrkL~l~gNqlk~I~krAfs----  413 (873)
T KOG4194|consen  383 ------------------------------------------D-AAVAF--NGLPSLRKLRLTGNQLKSIPKRAFS----  413 (873)
T ss_pred             ------------------------------------------c-chhhh--ccchhhhheeecCceeeecchhhhc----
Confidence                                                      0 01122  3455555555555555555555554    


Q ss_pred             CCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccC
Q psy3329         469 ITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKG  548 (694)
Q Consensus       469 L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~  548 (694)
                                             .++.|++|||.+|-|..+-|++|+.+ .|+.|.+..-.|.|||++.|+.+|+..++.
T Consensus       414 -----------------------gl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~l  469 (873)
T KOG4194|consen  414 -----------------------GLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKL  469 (873)
T ss_pred             -----------------------cCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhccc
Confidence                                   45555555555555555555666666 778888888899999999999999988766


Q ss_pred             CCc-eeecCCCCccccccc-cCCCCceEEEeecccCCCCCCCCcccccccchhHHHHhhhcC
Q psy3329         549 DIG-VLVGSTTPTEIGFGA-SRKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEAD  608 (694)
Q Consensus       549 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  608 (694)
                      +.. ...|+.|+...+..+ ....+.++|.  .+..|+......+.....|......|.+.+
T Consensus       470 q~sv~a~CayPe~Lad~~i~svd~~~lvC~--DspkpqI~~qPe~~~al~g~nirftC~a~s  529 (873)
T KOG4194|consen  470 QSSVIAKCAYPEPLADQSIVSVDTANLVCD--DSPKPQIVTQPETVSALIGENIRFTCNAYS  529 (873)
T ss_pred             ccceeeeccCCcccccceeEeechhhceec--CCCCcceecCchHhhhhhccceEEEEEecc
Confidence            543 345677777766554 6677889996  333343333333333333344444455555

>KOG4194|consensus

Probab=100.00  E-value=1.3e-40  Score=330.61  Aligned_cols=392  Identities=24%  Similarity=0.332  Sum_probs=328.9

Q ss_pred             CceEEECcCCCCcchh-hhhhc--CCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEe
Q psy3329          18 GLITINLNANPIQPVE-GAFLV--ARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM   94 (694)
Q Consensus        18 ~L~~L~Ls~~~l~~i~-~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~   94 (694)
                      +-..|+++.+.+..+. ..+..  .+.-+.|++++|++..+.+..|.++++|+.+++..|.++.||.. .....+|+.|+
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~  131 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLD  131 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEe
Confidence            4567889999998764 22222  23456799999999999999999999999999999999998652 34456699999


Q ss_pred             CCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCC
Q psy3329          95 LNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL  174 (694)
Q Consensus        95 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l  174 (694)
                      |.+|.|+.+..+.+..++.|+.|||+.|.++.+..  ..+..-.++++|+|++|.|+.+....|..+.+|..|.|+.|++
T Consensus       132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~--~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPK--PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             eeccccccccHHHHHhHhhhhhhhhhhchhhcccC--CCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence            99999999999999999999999999999987654  4566778999999999999999999999999999999999999


Q ss_pred             CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCC
Q psy3329         175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP  254 (694)
Q Consensus       175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~  254 (694)
                      +.++...|.  ++++|+.|+|..|.+ ..+.-..|..+++|+.|.|..|.+...... .+..+.++++|+|+.|+++.+.
T Consensus       210 ttLp~r~Fk--~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG-~Fy~l~kme~l~L~~N~l~~vn  285 (873)
T KOG4194|consen  210 TTLPQRSFK--RLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDG-AFYGLEKMEHLNLETNRLQAVN  285 (873)
T ss_pred             cccCHHHhh--hcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccccCc-ceeeecccceeecccchhhhhh
Confidence            999888775  799999999999998 555456799999999999999998877654 4588999999999999999999


Q ss_pred             cccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCC
Q psy3329         255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT  334 (694)
Q Consensus       255 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  334 (694)
                      ..++.+++.|+.|++++|.|..+-++.+..+++|+.|+|+.|+|+.+++..|..+..|++|+|++|.+..+....|.+++
T Consensus       286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls  365 (873)
T KOG4194|consen  286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS  365 (873)
T ss_pred             cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCC
Q psy3329         335 HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY  414 (694)
Q Consensus       335 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~  414 (694)
                      +|+.|||+.|.++...++.-....+++.|+.|++.+|++..++            ...                 |.+  
T Consensus       366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~------------krA-----------------fsg--  414 (873)
T KOG4194|consen  366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP------------KRA-----------------FSG--  414 (873)
T ss_pred             hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc------------hhh-----------------hcc--
Confidence            9999999999998855443322225677777777777664333            222                 444  


Q ss_pred             CCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEcc
Q psy3329         415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLS  451 (694)
Q Consensus       415 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls  451 (694)
                       ++.|++|+|.+|.|..+.+.+|  ..+ .|+.|.++
T Consensus       415 -l~~LE~LdL~~NaiaSIq~nAF--e~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  415 -LEALEHLDLGDNAIASIQPNAF--EPM-ELKELVMN  447 (873)
T ss_pred             -CcccceecCCCCcceeeccccc--ccc-hhhhhhhc
Confidence             6666666666666666666666  444 55555554

>KOG0472|consensus

Probab=100.00  E-value=1.4e-38  Score=302.99  Aligned_cols=476  Identities=26%  Similarity=0.334  Sum_probs=366.6

Q ss_pred             cCcccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCC
Q psy3329           9 NDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLT   88 (694)
Q Consensus         9 ~~~~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~   88 (694)
                      ....+++-..++.+++++|.+..+.+.+.++..+.+|++++|.+... |.+++.+..++.|+.++|+++.+++. ++.+.
T Consensus        37 e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~  114 (565)
T KOG0472|consen   37 EGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLSELPEQ-IGSLI  114 (565)
T ss_pred             chhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHhhccHH-Hhhhh
Confidence            34567778889999999999998888888999999999999998888 55688899999999999999888665 77888


Q ss_pred             CCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEe
Q psy3329          89 SLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLN  168 (694)
Q Consensus        89 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  168 (694)
                      +|..|+.++|.+... ++.++.+..|+.++..+|++..   +|..+.++.+|..+++.+|.+..+++.... ++.|++|+
T Consensus       115 ~l~~l~~s~n~~~el-~~~i~~~~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld  189 (565)
T KOG0472|consen  115 SLVKLDCSSNELKEL-PDSIGRLLDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLD  189 (565)
T ss_pred             hhhhhhccccceeec-CchHHHHhhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcc
Confidence            999999999999888 4567888899999999998874   556788888999999999999998887666 88899999


Q ss_pred             CCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCc
Q psy3329         169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC  248 (694)
Q Consensus       169 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  248 (694)
                      ...|.+..++....   .+.+|+.|++..|.+ ..+|  .|..|..|++|.++.|++...+.. ....++++.+|++.+|
T Consensus       190 ~~~N~L~tlP~~lg---~l~~L~~LyL~~Nki-~~lP--ef~gcs~L~Elh~g~N~i~~lpae-~~~~L~~l~vLDLRdN  262 (565)
T KOG0472|consen  190 CNSNLLETLPPELG---GLESLELLYLRRNKI-RFLP--EFPGCSLLKELHVGENQIEMLPAE-HLKHLNSLLVLDLRDN  262 (565)
T ss_pred             cchhhhhcCChhhc---chhhhHHHHhhhccc-ccCC--CCCccHHHHHHHhcccHHHhhHHH-Hhcccccceeeecccc
Confidence            99998887654432   577888888999988 6676  488899999999999888776654 3468889999999999


Q ss_pred             CCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCC--CCcEE-------eccC
Q psy3329         249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT--SLKTL-------ILSG  319 (694)
Q Consensus       249 ~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L-------~L~~  319 (694)
                      ++++.|. .+.-+.+|+.||+++|.+++.. ..++++ .|+.|.+.+|.+..+....+.+-+  -|++|       .++.
T Consensus       263 klke~Pd-e~clLrsL~rLDlSNN~is~Lp-~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~  339 (565)
T KOG0472|consen  263 KLKEVPD-EICLLRSLERLDLSNNDISSLP-YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ  339 (565)
T ss_pred             ccccCch-HHHHhhhhhhhcccCCccccCC-cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence            9998884 4566788999999999887654 457888 888999999988766544433211  11111       1121


Q ss_pred             Ccc------c--CcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCccc----------
Q psy3329         320 NKL------E--TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK----------  381 (694)
Q Consensus       320 n~l------~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~----------  381 (694)
                      ..=      +  .........+.+.++|++++-+++.+|..+|..+ .-.-...++++.|++..+|....          
T Consensus       340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~  418 (565)
T KOG0472|consen  340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA-KSEIVTSVNFSKNQLCELPKRLVELKELVTDLV  418 (565)
T ss_pred             CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh-hhcceEEEecccchHhhhhhhhHHHHHHHHHHH
Confidence            110      0  0011112345678899999999999999998632 23447889999999987775311          


Q ss_pred             --ccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccC
Q psy3329         382 --QYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP  459 (694)
Q Consensus       382 --~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  459 (694)
                        ...+..+|..+                     ..+++|..|+|++|.+..+|.+.   +.+..|+.||+|.|++..+|
T Consensus       419 lsnn~isfv~~~l---------------------~~l~kLt~L~L~NN~Ln~LP~e~---~~lv~Lq~LnlS~NrFr~lP  474 (565)
T KOG0472|consen  419 LSNNKISFVPLEL---------------------SQLQKLTFLDLSNNLLNDLPEEM---GSLVRLQTLNLSFNRFRMLP  474 (565)
T ss_pred             hhcCccccchHHH---------------------Hhhhcceeeecccchhhhcchhh---hhhhhhheecccccccccch
Confidence              11111122111                     12788999999999988887665   56778999999999888776


Q ss_pred             CCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccc
Q psy3329         460 PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWK  531 (694)
Q Consensus       460 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~  531 (694)
                      .. +..+..++.+-.++|++..+.+..+   .++.+|..|||.+|.+..++| .++++.++++++++||||.
T Consensus       475 ~~-~y~lq~lEtllas~nqi~~vd~~~l---~nm~nL~tLDL~nNdlq~IPp-~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  475 EC-LYELQTLETLLASNNQIGSVDPSGL---KNMRNLTTLDLQNNDLQQIPP-ILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HH-HhhHHHHHHHHhccccccccChHHh---hhhhhcceeccCCCchhhCCh-hhccccceeEEEecCCccC
Confidence            53 3455667777778899998888756   899999999999999988766 4799999999999999997

>KOG0472|consensus

Probab=100.00  E-value=2e-37  Score=295.13  Aligned_cols=440  Identities=25%  Similarity=0.299  Sum_probs=351.7

Q ss_pred             cccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC
Q psy3329          11 RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL   90 (694)
Q Consensus        11 ~~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L   90 (694)
                      +...++..++++++.+|.+.++|.+++.+..++.|+.++|+++.+ |..+..+..|+.|+.++|.+..++++ ++.+..|
T Consensus        62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~l-p~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l  139 (565)
T KOG0472|consen   62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSEL-PEQIGSLISLVKLDCSSNELKELPDS-IGRLLDL  139 (565)
T ss_pred             HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhc-cHHHhhhhhhhhhhccccceeecCch-HHHHhhh
Confidence            456788899999999999999999999999999999999999888 67788999999999999999998776 8889999


Q ss_pred             CEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCC
Q psy3329          91 EYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA  170 (694)
Q Consensus        91 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  170 (694)
                      +.++..+|+++.. |..+..+.+|..+++.+|++....   ...-+++.|++||...|-+..+|+. ++.+.+|..|++.
T Consensus       140 ~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~---~~~i~m~~L~~ld~~~N~L~tlP~~-lg~l~~L~~LyL~  214 (565)
T KOG0472|consen  140 EDLDATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALP---ENHIAMKRLKHLDCNSNLLETLPPE-LGGLESLELLYLR  214 (565)
T ss_pred             hhhhccccccccC-chHHHHHHHHHHhhccccchhhCC---HHHHHHHHHHhcccchhhhhcCChh-hcchhhhHHHHhh
Confidence            9999999999998 667888999999999999998543   3444489999999999999988874 7889999999999


Q ss_pred             CCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCC
Q psy3329         171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL  250 (694)
Q Consensus       171 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i  250 (694)
                      .|++...+  .|-  .|..|.++.++.|.+ ..+|.+....++++.+||+..|++...+..  +..+.+|+.|++++|.|
T Consensus       215 ~Nki~~lP--ef~--gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklke~Pde--~clLrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  215 RNKIRFLP--EFP--GCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRSLERLDLSNNDI  287 (565)
T ss_pred             hcccccCC--CCC--ccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccccccCchH--HHHhhhhhhhcccCCcc
Confidence            99988765  332  788999999999998 888888888999999999999999887754  46778999999999999


Q ss_pred             CcCCcccccCCCCccEEeCCCCCCcccch-----------------------------------------hhcCCCCCCc
Q psy3329         251 SRLPANTFHRFTCLQELDISHNPLIDAFT-----------------------------------------ALLSPLESLE  289 (694)
Q Consensus       251 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-----------------------------------------~~~~~l~~L~  289 (694)
                      +.++. .++++ .|+.|.+.+|.+..+-.                                         .......+.+
T Consensus       288 s~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tk  365 (565)
T KOG0472|consen  288 SSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTK  365 (565)
T ss_pred             ccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhh
Confidence            99984 67888 89999999998742100                                         0112244667


Q ss_pred             EEECcCCCCcccChhhhcCCC--CCcEEeccCCcccCcCchhhcCCCCC-CEEeCCCCCCcccCccccccCCCCCCCCee
Q psy3329         290 HLDMGYSNLQRISRSTFLKMT--SLKTLILSGNKLETLESGLFQNLTHL-SVLELNNCGLTRLNETVFHENYTYPDLEEL  366 (694)
Q Consensus       290 ~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  366 (694)
                      .|++++-+++.++...|..-.  -....+++.|++..++.. +..++.+ +.+.+++|.++.++... .   .+++|..|
T Consensus       366 iL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~-L~~lkelvT~l~lsnn~isfv~~~l-~---~l~kLt~L  440 (565)
T KOG0472|consen  366 ILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR-LVELKELVTDLVLSNNKISFVPLEL-S---QLQKLTFL  440 (565)
T ss_pred             hhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh-hHHHHHHHHHHHhhcCccccchHHH-H---hhhcceee
Confidence            788888888888877775432  366788888888877654 2333333 34566666666554433 3   67899999


Q ss_pred             eCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCcc
Q psy3329         367 RLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR  446 (694)
Q Consensus       367 ~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~  446 (694)
                      ++++|.+.++|..            .                  ..   +..|+.|+++.|.|..+|...   ..+..++
T Consensus       441 ~L~NN~Ln~LP~e------------~------------------~~---lv~Lq~LnlS~NrFr~lP~~~---y~lq~lE  484 (565)
T KOG0472|consen  441 DLSNNLLNDLPEE------------M------------------GS---LVRLQTLNLSFNRFRMLPECL---YELQTLE  484 (565)
T ss_pred             ecccchhhhcchh------------h------------------hh---hhhhheecccccccccchHHH---hhHHHHH
Confidence            9999988765542            2                  11   667999999999887665433   2345566


Q ss_pred             EEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChh
Q psy3329         447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPT  512 (694)
Q Consensus       447 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~  512 (694)
                      .+-.++|++..+++..+.++.+|.+|||.+|.+..++|. +   +++++|++|++++|.+. .++.
T Consensus       485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-L---gnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-L---GNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             HHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-h---ccccceeEEEecCCccC-CCHH
Confidence            666777999999888888999999999999999977664 4   89999999999999998 4443

>KOG0618|consensus

Probab=99.97  E-value=1e-34  Score=304.28  Aligned_cols=444  Identities=28%  Similarity=0.369  Sum_probs=255.4

Q ss_pred             ceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329          19 LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR   97 (694)
Q Consensus        19 L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~   97 (694)
                      ++.|+++.|.+-..| +....+-+|+.|++++|.+... |..+..+.+|+.|+++.|.+...+ ....++.+|++|.|.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccccC-CchhhhHHHHhhcccchhhHhhCc-hhhhhhhcchhheecc
Confidence            666666666666655 4444555577777776666554 555666677777777777666654 3366667777777776


Q ss_pred             CcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCC-------------------CCCCCCcccc
Q psy3329          98 CNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQS-------------------GISNLPDNVF  158 (694)
Q Consensus        98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-------------------~i~~~~~~~~  158 (694)
                      |.+... |..+..+++|+.|++++|.+..   +|..+..+..++.+..++|                   .+..-.....
T Consensus       101 n~l~~l-P~~~~~lknl~~LdlS~N~f~~---~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i  176 (1081)
T KOG0618|consen  101 NRLQSL-PASISELKNLQYLDLSFNHFGP---IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI  176 (1081)
T ss_pred             chhhcC-chhHHhhhcccccccchhccCC---CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence            666665 5566667777777777776653   3344445555555555555                   3222222222


Q ss_pred             CCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCC
Q psy3329         159 ANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLT  238 (694)
Q Consensus       159 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~  238 (694)
                      ..+..  .|++.+|.+...+..     .+.+|+.+....|.+. .+    --..++|+.|+.++|.++.....   ....
T Consensus       177 ~~l~~--~ldLr~N~~~~~dls-----~~~~l~~l~c~rn~ls-~l----~~~g~~l~~L~a~~n~l~~~~~~---p~p~  241 (1081)
T KOG0618|consen  177 YNLTH--QLDLRYNEMEVLDLS-----NLANLEVLHCERNQLS-EL----EISGPSLTALYADHNPLTTLDVH---PVPL  241 (1081)
T ss_pred             hhhhe--eeecccchhhhhhhh-----hccchhhhhhhhcccc-eE----EecCcchheeeeccCcceeeccc---cccc
Confidence            22222  244444443311110     3334444444433331 11    01223444444444444422211   1223


Q ss_pred             CccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEecc
Q psy3329         239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS  318 (694)
Q Consensus       239 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  318 (694)
                      +|+.++++.|+++.++ +++..+.+|+.++..+|.+. .+|..+....+|+.|.+..|++..+++ ...+...|++|+|.
T Consensus       242 nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeeeh
Confidence            4555555555555554 44455555555555555542 223333344445555555555544442 23334555555555


Q ss_pred             CCcccCcCchhhcCCCC-CCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccc
Q psy3329         319 GNKLETLESGLFQNLTH-LSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFD  397 (694)
Q Consensus       319 ~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~  397 (694)
                      .|++...+...|.-... |..|+.+.|.+...+...-   ...+.|+.|.+.+|.+++                      
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e---~~~~~Lq~LylanN~Ltd----------------------  373 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE---NNHAALQELYLANNHLTD----------------------  373 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccc---hhhHHHHHHHHhcCcccc----------------------
Confidence            55555444433333322 4444444444444331111   133445555555555542                      


Q ss_pred             hhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCC
Q psy3329         398 FLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN  477 (694)
Q Consensus       398 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  477 (694)
                                ..|.-...+.+|+.|+|++|++..++...+  .++..|+.|+||+|+++.++ .....+..|++|...+|
T Consensus       374 ----------~c~p~l~~~~hLKVLhLsyNrL~~fpas~~--~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  374 ----------SCFPVLVNFKHLKVLHLSYNRLNSFPASKL--RKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             ----------cchhhhccccceeeeeecccccccCCHHHH--hchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCC
Confidence                      122222238899999999999999998888  88999999999999999988 44688999999999999


Q ss_pred             ccCCCcchhhhhhcccCCCcEEECCCCccccc-ChhhhcCCCcccEEEccCCcc
Q psy3329         478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHI-SPTVLRHNRAITSIKLVGNPW  530 (694)
Q Consensus       478 ~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~-~~~~~~~~~~l~~l~l~~N~~  530 (694)
                      ++...+  .+   ..++.|+.+|+|.|+|+.. .|.... -++|++||++||++
T Consensus       441 ~l~~fP--e~---~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  441 QLLSFP--EL---AQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             ceeech--hh---hhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence            998765  34   7899999999999999984 444433 38999999999996

>KOG0618|consensus

Probab=99.96  E-value=1e-31  Score=281.88  Aligned_cols=460  Identities=24%  Similarity=0.268  Sum_probs=339.6

Q ss_pred             EEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcC
Q psy3329          21 TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL  100 (694)
Q Consensus        21 ~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l  100 (694)
                      .+|.+..+++-||..+.....++.|+++.|.+...+-+...+.-+|+.|++++|.+...+.. +..+.+|+.|+++.|.|
T Consensus         2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             CcccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchhhH
Confidence            46788889999996666666699999999977665545566677799999999999887544 77889999999999999


Q ss_pred             CccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchh
Q psy3329         101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA  180 (694)
Q Consensus       101 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  180 (694)
                      ... |.+..++.+|++|.|.+|.+.   .+|..+..+++|+.|+++.|.+..+|. .+..+..+..+..++|.  .+...
T Consensus        81 ~~v-p~s~~~~~~l~~lnL~~n~l~---~lP~~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~--~~~~l  153 (1081)
T KOG0618|consen   81 RSV-PSSCSNMRNLQYLNLKNNRLQ---SLPASISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNE--KIQRL  153 (1081)
T ss_pred             hhC-chhhhhhhcchhheeccchhh---cCchhHHhhhcccccccchhccCCCch-hHHhhhHHHHHhhhcch--hhhhh
Confidence            988 578899999999999999987   456788999999999999999988876 45667777888888882  11111


Q ss_pred             hhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccC
Q psy3329         181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR  260 (694)
Q Consensus       181 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~  260 (694)
                           .-..++.+++..|.+.+.+.. ....++.  .|+|..|.+....    +..+++|+.+....|++..+..    .
T Consensus       154 -----g~~~ik~~~l~~n~l~~~~~~-~i~~l~~--~ldLr~N~~~~~d----ls~~~~l~~l~c~rn~ls~l~~----~  217 (1081)
T KOG0618|consen  154 -----GQTSIKKLDLRLNVLGGSFLI-DIYNLTH--QLDLRYNEMEVLD----LSNLANLEVLHCERNQLSELEI----S  217 (1081)
T ss_pred             -----ccccchhhhhhhhhcccchhc-chhhhhe--eeecccchhhhhh----hhhccchhhhhhhhcccceEEe----c
Confidence                 112267777777776555543 2444444  5888888776222    3667788888888887776542    3


Q ss_pred             CCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEe
Q psy3329         261 FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE  340 (694)
Q Consensus       261 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  340 (694)
                      -++|+.|+.++|.++.....  ..-.+|+++++++|+++.++ .++..|.+|+.++..+|.++.++... ....+|+.|.
T Consensus       218 g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri-~~~~~L~~l~  293 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRI-SRITSLVSLS  293 (1081)
T ss_pred             CcchheeeeccCcceeeccc--cccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHH-hhhhhHHHHH
Confidence            36788888888877743322  23357788888888888777 77778888888888888886665543 4467777777


Q ss_pred             CCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhh----hcccccccCCCC
Q psy3329         341 LNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI----LNETVFHENYTY  416 (694)
Q Consensus       341 L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~----~~~~~~~~~~~~  416 (694)
                      +..|.+..+++..-    ....|++|+|..|++..+|+...     .++...      +..+..    +...--.+...+
T Consensus       294 ~~~nel~yip~~le----~~~sL~tLdL~~N~L~~lp~~~l-----~v~~~~------l~~ln~s~n~l~~lp~~~e~~~  358 (1081)
T KOG0618|consen  294 AAYNELEYIPPFLE----GLKSLRTLDLQSNNLPSLPDNFL-----AVLNAS------LNTLNVSSNKLSTLPSYEENNH  358 (1081)
T ss_pred             hhhhhhhhCCCccc----ccceeeeeeehhccccccchHHH-----hhhhHH------HHHHhhhhccccccccccchhh
Confidence            88887777766432    46777888888887766554210     000000      000000    000000111236


Q ss_pred             CCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCC
Q psy3329         417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLEL  496 (694)
Q Consensus       417 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L  496 (694)
                      +.|+.|.+.+|.++.-....+  .+..+|+.|+|++|+|..++...+.++..|++|+||+|+++.++ ...   .++..|
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tv---a~~~~L  432 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTV---ANLGRL  432 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhh--ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHH---Hhhhhh
Confidence            789999999999998776667  88999999999999999999999999999999999999999765 455   789999


Q ss_pred             cEEECCCCcccccChhhhcCCCcccEEEccCCccc
Q psy3329         497 ESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWK  531 (694)
Q Consensus       497 ~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~  531 (694)
                      ++|..-+|++...+  .+..++.|+.+|++.|.+.
T Consensus       433 ~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  433 HTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HHHhhcCCceeech--hhhhcCcceEEecccchhh
Confidence            99999999998875  5678999999999999764

>KOG0444|consensus

Probab=99.96  E-value=3.2e-31  Score=265.76  Aligned_cols=371  Identities=26%  Similarity=0.354  Sum_probs=286.3

Q ss_pred             CCCCCceEEECcCCCCc--chhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCC
Q psy3329          14 LDNPGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLE   91 (694)
Q Consensus        14 ~~~~~L~~L~Ls~~~l~--~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~   91 (694)
                      +-++.++-+|+++|.++  .+|.....+++++.|.|...++..+ |+.++.+.+|++|.+++|++..+... ++.++.|+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LR   81 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLR   81 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhH
Confidence            34677888899999888  5788888889999999988888777 78889999999999999998877544 88889999


Q ss_pred             EEeCCCCcCC--ccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeC
Q psy3329          92 YLMLNRCNLT--YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL  169 (694)
Q Consensus        92 ~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l  169 (694)
                      .+++.+|++.  |+ |..+-++..|+.|+|++|++.   ..|..+.+.+++-.|+|++|+|..||...|.++..|-.|+|
T Consensus        82 sv~~R~N~LKnsGi-P~diF~l~dLt~lDLShNqL~---EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGI-PTDIFRLKDLTILDLSHNQLR---EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             HHhhhccccccCCC-Cchhcccccceeeecchhhhh---hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence            9999999875  45 556678899999999999887   45667888889999999999999999888889999999999


Q ss_pred             CCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcC
Q psy3329         170 AENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCG  249 (694)
Q Consensus       170 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~  249 (694)
                      ++|.+..++...-   .+.+|++|+|++|.+ .......+..+++|+.|.+++.+-+-...+..+..+.+|..++++.|+
T Consensus       158 S~NrLe~LPPQ~R---RL~~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  158 SNNRLEMLPPQIR---RLSMLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             ccchhhhcCHHHH---HHhhhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            9998887665443   677888888888876 333334455677778888887765555445556777888888888888


Q ss_pred             CCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCccc--CcCc
Q psy3329         250 LSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE--TLES  327 (694)
Q Consensus       250 i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~  327 (694)
                      +..+| +.+..+++|+.|+|++|+++..-. ......+|+.|+|+.|+++.++ .++.+++.|+.|.+.+|+++  +++.
T Consensus       234 Lp~vP-ecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  234 LPIVP-ECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             CCcch-HHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccch-HHHhhhHHHHHHHhccCcccccCCcc
Confidence            88777 567778888888888888876422 2233467888888888887766 57778888888888888664  5554


Q ss_pred             hhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcc
Q psy3329         328 GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNE  407 (694)
Q Consensus       328 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~  407 (694)
                      + ++.+..|+.+..++|.+.-+|.+..    .|+.|+.|.|+.|++..+|.            .+               
T Consensus       311 G-IGKL~~Levf~aanN~LElVPEglc----RC~kL~kL~L~~NrLiTLPe------------aI---------------  358 (1255)
T KOG0444|consen  311 G-IGKLIQLEVFHAANNKLELVPEGLC----RCVKLQKLKLDHNRLITLPE------------AI---------------  358 (1255)
T ss_pred             c-hhhhhhhHHHHhhccccccCchhhh----hhHHHHHhcccccceeechh------------hh---------------
Confidence            4 6778888888888888877777665    68888888888888765443            22               


Q ss_pred             cccccCCCCCCCceEEcCCCCCcccCCC
Q psy3329         408 TVFHENYTYPDLEELRLSGNPLHVLPTG  435 (694)
Q Consensus       408 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  435 (694)
                            +-++.|+.||+..|.--..||.
T Consensus       359 ------HlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  359 ------HLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             ------hhcCCcceeeccCCcCccCCCC
Confidence                  1167788888888876666554

>KOG4237|consensus

Probab=99.96  E-value=3.5e-30  Score=245.60  Aligned_cols=330  Identities=21%  Similarity=0.323  Sum_probs=252.7

Q ss_pred             CCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcC-CCCcccChhhhcCCCCCcEEe
Q psy3329         238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY-SNLQRISRSTFLKMTSLKTLI  316 (694)
Q Consensus       238 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  316 (694)
                      +.-.+++|..|+|+.+|+.+|+.+++|+.|+|++|.|..+-|.+|.+++++..|-+.+ |+|+.++...|+++..|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            5678899999999999999999999999999999999999999999999999988766 899999999999999999999


Q ss_pred             ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCc---ccccccccccchhc
Q psy3329         317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS---TKQYSMRTIPTQIW  393 (694)
Q Consensus       317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~~~~~~ip~~~~  393 (694)
                      +.-|++..+....|..+++|..|.+.+|.+..+....|.   .+.+++.+.+..|++...-.-   .....+..+-.+..
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~---~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQ---GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhcccccc---chhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            999999999999999999999999999999999888887   788999999999885422110   00000000000001


Q ss_pred             cccchhhhh----hhhcccccccCCCCCCCce-EEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCC
Q psy3329         394 KNFDFLVIL----FILNETVFHENYTYPDLEE-LRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRN  468 (694)
Q Consensus       394 ~~~~~l~~~----~~~~~~~~~~~~~~~~L~~-L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  468 (694)
                      +......+.    .......|..  ....+.+ +....+.....+...|  ..+++|++|+|++|.|+.+.+.+|.+...
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf--~~L~~L~~lnlsnN~i~~i~~~aFe~~a~  299 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCF--KKLPNLRKLNLSNNKITRIEDGAFEGAAE  299 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHH--hhcccceEeccCCCccchhhhhhhcchhh
Confidence            111111110    0111111211  0111111 1222223334444556  89999999999999999999999999999


Q ss_pred             CCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccC
Q psy3329         469 ITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKG  548 (694)
Q Consensus       469 L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~  548 (694)
                      +++|.|..|+|..+....|   .++..|+.|+|.+|+|+.+.|.+|..+.+|..+++-+|||.|+|.+.|+..|+++++ 
T Consensus       300 l~eL~L~~N~l~~v~~~~f---~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~-  375 (498)
T KOG4237|consen  300 LQELYLTRNKLEFVSSGMF---QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS-  375 (498)
T ss_pred             hhhhhcCcchHHHHHHHhh---hccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC-
Confidence            9999999999999999999   889999999999999999999999999999999999999999999999999999855 


Q ss_pred             CCceeecCCCCccccccc-cCCCCceEEEee
Q psy3329         549 DIGVLVGSTTPTEIGFGA-SRKKKGLVCYFD  578 (694)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~~  578 (694)
                      ....+-|..|..+.++.+ .+....+.|..+
T Consensus       376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~  406 (498)
T KOG4237|consen  376 VVGNPRCQSPGFVRQIPISDVAFGDFRCGGP  406 (498)
T ss_pred             CCCCCCCCCCchhccccchhccccccccCCc
Confidence            555555555555554443 233344555533

>KOG4237|consensus

Probab=99.96  E-value=4.4e-31  Score=251.68  Aligned_cols=308  Identities=25%  Similarity=0.291  Sum_probs=213.1

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC-C
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR-C   98 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~-n   98 (694)
                      ..++.+...++.+|..+  .+....++|..|.|+.+++.+|+.+++|+.|||++|.|+.|.|.+|.++..|..|-+.+ |
T Consensus        49 ~~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             ceEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            46678888899998544  45678899999999999999999999999999999999999999999999998887777 8


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcc
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD  178 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~  178 (694)
                      +|+.++..+|+++..|+.|.+.-|++..+..  ..+..+++|..|.+.+|.+..+....|..+..++.+.+..|.+...-
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~--~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQ--DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhH--HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence            9999999999999999999999998886443  67889999999999999999999989999999999999888744321


Q ss_pred             hhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCc-CCCcCCccc
Q psy3329         179 VATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC-GLSRLPANT  257 (694)
Q Consensus       179 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~  257 (694)
                             +++.+.... ..+.       ..++......-..+.+.++..+....+......+..--.+.+ -....|...
T Consensus       205 -------nL~wla~~~-a~~~-------ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c  269 (498)
T KOG4237|consen  205 -------NLPWLADDL-AMNP-------IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKC  269 (498)
T ss_pred             -------ccchhhhHH-hhch-------hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHH
Confidence                   111111100 0000       012222222222222222222222211111111111111122 223334455


Q ss_pred             ccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCC
Q psy3329         258 FHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS  337 (694)
Q Consensus       258 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  337 (694)
                      |..+++|++|++++|+++++-+.+|.++..+++|.|..|++..+....|.++.+|+.|+|++|+|+.+.+..|..+.+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            66777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             EEeCCCCCC
Q psy3329         338 VLELNNCGL  346 (694)
Q Consensus       338 ~L~L~~n~l  346 (694)
                      +|++-.|.+
T Consensus       350 ~l~l~~Np~  358 (498)
T KOG4237|consen  350 TLNLLSNPF  358 (498)
T ss_pred             eeehccCcc
Confidence            777666543

>KOG0444|consensus

Probab=99.96  E-value=1.1e-30  Score=261.87  Aligned_cols=370  Identities=29%  Similarity=0.380  Sum_probs=204.9

Q ss_pred             CCCCCeEECCCCCCC-ccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCC
Q psy3329          63 LTTLNKLDLSGNPLR-IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD  141 (694)
Q Consensus        63 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  141 (694)
                      ++-.+-.|+++|.++ .-.|.....|+.++.|.|...++..+ |+.++.|.+|++|.+.+|++..+   -..+..++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~~v---hGELs~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLISV---HGELSDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhHhh---hhhhccchhhH
Confidence            344445555555555 22333344455555555555555544 44555555555555555554421   12344444444


Q ss_pred             EEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcC
Q psy3329         142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS  221 (694)
Q Consensus       142 ~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  221 (694)
                      .+.+..                        |.+....++..+. .+..|+.|+|++|++ .++|. .+...+++-.|+|+
T Consensus        82 sv~~R~------------------------N~LKnsGiP~diF-~l~dLt~lDLShNqL-~EvP~-~LE~AKn~iVLNLS  134 (1255)
T KOG0444|consen   82 SVIVRD------------------------NNLKNSGIPTDIF-RLKDLTILDLSHNQL-REVPT-NLEYAKNSIVLNLS  134 (1255)
T ss_pred             HHhhhc------------------------cccccCCCCchhc-ccccceeeecchhhh-hhcch-hhhhhcCcEEEEcc
Confidence            444444                        4443333332222 445555555555555 44443 35555666666666


Q ss_pred             CCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCc-c
Q psy3329         222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ-R  300 (694)
Q Consensus       222 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~  300 (694)
                      +|++..++... +.+++.|-.|+|++|++..+|+. ...+..|++|.|++|.+...-...+..+++|+.|.+++.+-+ .
T Consensus       135 ~N~IetIPn~l-finLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~  212 (1255)
T KOG0444|consen  135 YNNIETIPNSL-FINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD  212 (1255)
T ss_pred             cCccccCCchH-HHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence            66665555432 34556666666666666666643 455666666666666665544444455556666666654322 2


Q ss_pred             cChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcc
Q psy3329         301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST  380 (694)
Q Consensus       301 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  380 (694)
                      -.|.++..+.+|..+|++.|.+..++ +.+..+++|+.|+|++|+|+.+....-    ...+|++|++|.|+++.+|   
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~LrrLNLS~N~iteL~~~~~----~W~~lEtLNlSrNQLt~LP---  284 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNLRRLNLSGNKITELNMTEG----EWENLETLNLSRNQLTVLP---  284 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCCcch-HHHhhhhhhheeccCcCceeeeeccHH----HHhhhhhhccccchhccch---
Confidence            22345566666667777766665543 334556667777777776666543322    3456667777777665433   


Q ss_pred             cccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCc--ccCCCCCCCcCCCCccEEEccCCcCCcc
Q psy3329         381 KQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH--VLPTGNLLPPQLSRLRSLDLSRCKIDYL  458 (694)
Q Consensus       381 ~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  458 (694)
                               ..+++                     ++.|+.|.+.+|+++  |+|.+ +  +.+.+|+++..++|.+.-.
T Consensus       285 ---------~avcK---------------------L~kL~kLy~n~NkL~FeGiPSG-I--GKL~~Levf~aanN~LElV  331 (1255)
T KOG0444|consen  285 ---------DAVCK---------------------LTKLTKLYANNNKLTFEGIPSG-I--GKLIQLEVFHAANNKLELV  331 (1255)
T ss_pred             ---------HHHhh---------------------hHHHHHHHhccCcccccCCccc-h--hhhhhhHHHHhhccccccC
Confidence                     22221                     566666666666544  44433 3  6677777777777766544


Q ss_pred             CCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329         459 PPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP  511 (694)
Q Consensus       459 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~  511 (694)
                       |..++.|..|+.|.|+.|++... |+++   .-++.|+.||+..|.--..+|
T Consensus       332 -PEglcRC~kL~kL~L~~NrLiTL-PeaI---HlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  332 -PEGLCRCVKLQKLKLDHNRLITL-PEAI---HLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             -chhhhhhHHHHHhcccccceeec-hhhh---hhcCCcceeeccCCcCccCCC
Confidence             34467777777777777777644 3444   566777777777765444333

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.1e-21  Score=211.80  Aligned_cols=257  Identities=28%  Similarity=0.308  Sum_probs=136.4

Q ss_pred             ccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeC
Q psy3329         190 LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI  269 (694)
Q Consensus       190 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L  269 (694)
                      -..|+++.+.+ ..+|.. +.  ++|+.|++.+|+++..+.     .+++|+.|++++|+++.++.    ..++|+.|++
T Consensus       203 ~~~LdLs~~~L-tsLP~~-l~--~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~L  269 (788)
T PRK15387        203 NAVLNVGESGL-TTLPDC-LP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  269 (788)
T ss_pred             CcEEEcCCCCC-CcCCcc-hh--cCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCcccC----cccccceeec
Confidence            44556666655 344432 21  356666666666655431     23566666666666665542    1245666666


Q ss_pred             CCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCccc
Q psy3329         270 SHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL  349 (694)
Q Consensus       270 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  349 (694)
                      ++|.+... |..   ..+|+.|++++|+++.++.    ..++|+.|++++|++..++.    ...+|+.|++++|+++.+
T Consensus       270 s~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~L  337 (788)
T PRK15387        270 FSNPLTHL-PAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL  337 (788)
T ss_pred             cCCchhhh-hhc---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCC----CcccccccccccCccccc
Confidence            66665432 221   2345666666666665542    23556666666666665543    123456666666666655


Q ss_pred             CccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCC
Q psy3329         350 NETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL  429 (694)
Q Consensus       350 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  429 (694)
                      +.       ...+|+.|++++|+++.+|..                                    .++|+.|++++|.+
T Consensus       338 P~-------lp~~Lq~LdLS~N~Ls~LP~l------------------------------------p~~L~~L~Ls~N~L  374 (788)
T PRK15387        338 PT-------LPSGLQELSVSDNQLASLPTL------------------------------------PSELYKLWAYNNRL  374 (788)
T ss_pred             cc-------cccccceEecCCCccCCCCCC------------------------------------Ccccceehhhcccc
Confidence            42       123566666666666544320                                    33455556666666


Q ss_pred             cccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCccccc
Q psy3329         430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI  509 (694)
Q Consensus       430 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~  509 (694)
                      +.++.      ...+|+.|+|++|.|++++..    .++|+.|++++|++++++ ..      ..+|+.|++++|+|+.+
T Consensus       375 ~~LP~------l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP-~l------~~~L~~L~Ls~NqLt~L  437 (788)
T PRK15387        375 TSLPA------LPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLP-ML------PSGLLSLSVYRNQLTRL  437 (788)
T ss_pred             ccCcc------cccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCC-cc------hhhhhhhhhccCccccc
Confidence            55432      123456666666666654432    245666666666665432 11      12455566666666543


Q ss_pred             ChhhhcCCCcccEEEccCCcccc
Q psy3329         510 SPTVLRHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       510 ~~~~~~~~~~l~~l~l~~N~~~c  532 (694)
                       |..+..++.|..+++++|++.+
T Consensus       438 -P~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        438 -PESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             -ChHHhhccCCCeEECCCCCCCc
Confidence             3445555666666666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.6e-21  Score=212.57  Aligned_cols=265  Identities=26%  Similarity=0.290  Sum_probs=133.5

Q ss_pred             CCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcE
Q psy3329         138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRT  217 (694)
Q Consensus       138 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  217 (694)
                      ..-..|+++++.++.+|+.. .  ++|+.|++.+|.++.++.      .+++|++|++++|.+                 
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~L-----------------  254 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQL-----------------  254 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcch-h--cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCcc-----------------
Confidence            34556677777766665532 1  256666666666554331      234455555555544                 


Q ss_pred             EEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCC
Q psy3329         218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN  297 (694)
Q Consensus       218 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~  297 (694)
                              +..+.     ..++|+.|++++|.++.++.    ..++|+.|++++|++.... .   ..++|+.|+|++|.
T Consensus       255 --------tsLP~-----lp~sL~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP-~---~p~~L~~LdLS~N~  313 (788)
T PRK15387        255 --------TSLPV-----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQ  313 (788)
T ss_pred             --------CcccC-----cccccceeeccCCchhhhhh----chhhcCEEECcCCcccccc-c---cccccceeECCCCc
Confidence                    43321     12344444444444444332    1133444555555444321 1   12345555555555


Q ss_pred             CcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCC
Q psy3329         298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP  377 (694)
Q Consensus       298 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  377 (694)
                      ++.++.    ...+|+.|++++|.++.++.  +  ..+|+.|+|++|+|+.++.       ..++|+.|++++|+++.+|
T Consensus       314 L~~Lp~----lp~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~LP~-------lp~~L~~L~Ls~N~L~~LP  378 (788)
T PRK15387        314 LASLPA----LPSELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASLPT-------LPSELYKLWAYNNRLTSLP  378 (788)
T ss_pred             cccCCC----CcccccccccccCccccccc--c--ccccceEecCCCccCCCCC-------CCcccceehhhccccccCc
Confidence            554432    11245555555555554432  1  1355566666666555443       1234555566666555333


Q ss_pred             CcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCc
Q psy3329         378 DSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY  457 (694)
Q Consensus       378 ~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  457 (694)
                      ..                                    ..+|+.|++++|.+++++..      .++|+.|++++|.|++
T Consensus       379 ~l------------------------------------~~~L~~LdLs~N~Lt~LP~l------~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        379 AL------------------------------------PSGLKELIVSGNRLTSLPVL------PSELKELMVSGNRLTS  416 (788)
T ss_pred             cc------------------------------------ccccceEEecCCcccCCCCc------ccCCCEEEccCCcCCC
Confidence            10                                    23456666666666654421      2456666666666666


Q ss_pred             cCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhh
Q psy3329         458 LPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL  514 (694)
Q Consensus       458 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~  514 (694)
                      ++..    ..+|+.|++++|+|+.+ |..+   ..+++|+.|+|++|+|++..+..+
T Consensus       417 IP~l----~~~L~~L~Ls~NqLt~L-P~sl---~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        417 LPML----PSGLLSLSVYRNQLTRL-PESL---IHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCcc----hhhhhhhhhccCccccc-ChHH---hhccCCCeEECCCCCCCchHHHHH
Confidence            5431    23566666666666643 4444   556666666666666666555544

>PLN03210 Resistant to P

Probab=99.87  E-value=5.6e-20  Score=216.73  Aligned_cols=311  Identities=23%  Similarity=0.261  Sum_probs=150.2

Q ss_pred             hhhhcCCCCcEEEccCCcC------CccChhhccCC-CCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChh
Q psy3329          34 GAFLVARSLLYLYMQECTL------SKINPQFFTNL-TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPS  106 (694)
Q Consensus        34 ~~~~~~~~L~~L~l~~n~l------~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  106 (694)
                      .+|..+++|+.|.+..+..      ....|..|..+ .+|+.|.+.++.+..++.. | ...+|++|++.+|.+..+ +.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L-~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKL-WD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCcccccc-cc
Confidence            5666777777776654321      11223444444 3477777777666666443 3 356677777777766654 44


Q ss_pred             hhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCC-CCCcchhhhccc
Q psy3329         107 AFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE-LIDLDVATTLGQ  185 (694)
Q Consensus       107 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~  185 (694)
                      .+..+++|+.|+++++...  ..+| .+..+++|+.|++++|......+..+.++++|+.|++++|. +..++..  .  
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l--~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i--  701 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNL--KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--I--  701 (1153)
T ss_pred             ccccCCCCCEEECCCCCCc--CcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--C--
Confidence            5566677777777665321  1222 25566677777776654333333445666666666666542 3222211  1  


Q ss_pred             CCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcC-------Ccccc
Q psy3329         186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL-------PANTF  258 (694)
Q Consensus       186 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~-------~~~~~  258 (694)
                      ++++|+.|++++|...+.+|.    ..++|+.|++++|.+...+..   ..+++|+.|.+.++....+       .+..+
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~  774 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSN---LRLENLDELILCEMKSEKLWERVQPLTPLMT  774 (1153)
T ss_pred             CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccccccc---ccccccccccccccchhhccccccccchhhh
Confidence            455666666666544333331    134556666665555433321   1345555555544322111       11111


Q ss_pred             cCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCC-CCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCC
Q psy3329         259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS-NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS  337 (694)
Q Consensus       259 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  337 (694)
                      ...++|+.|++++|.....+|..++.+++|+.|+|++| .+..++. .+ ++++|+.|+|++|......+.   ...+|+
T Consensus       775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~  849 (1153)
T PLN03210        775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-GI-NLESLESLDLSGCSRLRTFPD---ISTNIS  849 (1153)
T ss_pred             hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-CC-CccccCEEECCCCCccccccc---cccccC
Confidence            22344555555555544444555555555555555544 2333321 11 344555555554422111111   123444


Q ss_pred             EEeCCCCCCcccCccccccCCCCCCCCeeeCCC
Q psy3329         338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSG  370 (694)
Q Consensus       338 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~  370 (694)
                      .|+|++|.++.+|... .   .+++|+.|++++
T Consensus       850 ~L~Ls~n~i~~iP~si-~---~l~~L~~L~L~~  878 (1153)
T PLN03210        850 DLNLSRTGIEEVPWWI-E---KFSNLSFLDMNG  878 (1153)
T ss_pred             EeECCCCCCccChHHH-h---cCCCCCEEECCC
Confidence            5555555444443322 1   344444444444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.86  E-value=4.4e-20  Score=217.60  Aligned_cols=338  Identities=21%  Similarity=0.265  Sum_probs=253.3

Q ss_pred             cCcccCCCCCceEEECcCCCCc-------chhhhhhcC-CCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccC
Q psy3329           9 NDRRNLDNPGLITINLNANPIQ-------PVEGAFLVA-RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE   80 (694)
Q Consensus         9 ~~~~~~~~~~L~~L~Ls~~~l~-------~i~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~   80 (694)
                      ...+|..+++|+.|.+..+...       .+|+.|..+ .+|+.|.+.++.+..+ |..| ...+|+.|++++|.+..++
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCccccccc
Confidence            3457999999999999765422       456656665 4699999999988877 4555 5789999999999998876


Q ss_pred             CCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC-CCCCCccccC
Q psy3329          81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG-ISNLPDNVFA  159 (694)
Q Consensus        81 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~  159 (694)
                      .+ +..+++|+.|+|+++......| .+..+++|+.|++++|...  ..+|..+.++++|+.|++++|. +..++...  
T Consensus       628 ~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L--~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--  701 (1153)
T PLN03210        628 DG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL--VELPSSIQYLNKLEDLDMSRCENLEILPTGI--  701 (1153)
T ss_pred             cc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc--cccchhhhccCCCCEEeCCCCCCcCccCCcC--
Confidence            54 7889999999999875433334 3788999999999998543  4667889999999999999864 55665432  


Q ss_pred             CCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccc------hhhh
Q psy3329         160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAAD------LSVA  233 (694)
Q Consensus       160 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~  233 (694)
                      ++++|+.|++++|..... .+    ....+|++|++++|.+ ..+|..  ..+++|+.|.+.++......      ....
T Consensus       702 ~l~sL~~L~Lsgc~~L~~-~p----~~~~nL~~L~L~~n~i-~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKS-FP----DISTNISWLDLDETAI-EEFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             CCCCCCEEeCCCCCCccc-cc----cccCCcCeeecCCCcc-cccccc--ccccccccccccccchhhccccccccchhh
Confidence            789999999999853221 11    1356899999999998 566643  25788998888774321110      0011


Q ss_pred             ccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCC-CcccChhhhcCCCCC
Q psy3329         234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN-LQRISRSTFLKMTSL  312 (694)
Q Consensus       234 l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  312 (694)
                      ...+++|+.|++++|......+..+.++++|+.|++++|...+.+|... .+++|++|+|++|. +..++ .   ...+|
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-~---~~~nL  848 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP-D---ISTNI  848 (1153)
T ss_pred             hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-c---ccccc
Confidence            2345789999999995443334678999999999999987767677655 68999999999984 33332 1   24689


Q ss_pred             cEEeccCCcccCcCchhhcCCCCCCEEeCCCC-CCcccCccccccCCCCCCCCeeeCCCCC
Q psy3329         313 KTLILSGNKLETLESGLFQNLTHLSVLELNNC-GLTRLNETVFHENYTYPDLEELRLSGNP  372 (694)
Q Consensus       313 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~Ls~n~  372 (694)
                      +.|+|++|.++.++. .+..+++|+.|++++| .+..++....    .++.|+.+++++|.
T Consensus       849 ~~L~Ls~n~i~~iP~-si~~l~~L~~L~L~~C~~L~~l~~~~~----~L~~L~~L~l~~C~  904 (1153)
T PLN03210        849 SDLNLSRTGIEEVPW-WIEKFSNLSFLDMNGCNNLQRVSLNIS----KLKHLETVDFSDCG  904 (1153)
T ss_pred             CEeECCCCCCccChH-HHhcCCCCCEEECCCCCCcCccCcccc----cccCCCeeecCCCc
Confidence            999999999998764 5788999999999985 5666665432    67888999998874

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=1.4e-18  Score=191.25  Aligned_cols=249  Identities=24%  Similarity=0.353  Sum_probs=175.2

Q ss_pred             CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEE
Q psy3329         213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD  292 (694)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  292 (694)
                      .+...|+++++.++..+..    -.+.|+.|++++|+++.++...+   ++|+.|++++|.+... |..+.  ++|+.|+
T Consensus       178 ~~~~~L~L~~~~LtsLP~~----Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLTTIPAC----IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSI-PATLP--DTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcCcCCcc----cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccC-Chhhh--ccccEEE
Confidence            3466777777777665421    12568888888888887775432   4788888888887653 33332  4688888


Q ss_pred             CcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCC
Q psy3329         293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP  372 (694)
Q Consensus       293 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~  372 (694)
                      |++|.+..++.. +  ..+|+.|++++|++..++.. +  .++|+.|++++|+++.++...      .++|+.|++++|.
T Consensus       248 Ls~N~L~~LP~~-l--~s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~l------p~sL~~L~Ls~N~  315 (754)
T PRK15370        248 LSINRITELPER-L--PSALQSLDLFHNKISCLPEN-L--PEELRYLSVYDNSIRTLPAHL------PSGITHLNVQSNS  315 (754)
T ss_pred             CcCCccCcCChh-H--hCCCCEEECcCCccCccccc-c--CCCCcEEECCCCccccCcccc------hhhHHHHHhcCCc
Confidence            888888876543 2  24788888888888876543 2  257888888888888776432      2468888888888


Q ss_pred             CcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccC
Q psy3329         373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR  452 (694)
Q Consensus       373 l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~  452 (694)
                      ++.++.            .+                       .++|+.|++++|.++.++.. +    .++|+.|+|++
T Consensus       316 Lt~LP~------------~l-----------------------~~sL~~L~Ls~N~Lt~LP~~-l----~~sL~~L~Ls~  355 (754)
T PRK15370        316 LTALPE------------TL-----------------------PPGLKTLEAGENALTSLPAS-L----PPELQVLDVSK  355 (754)
T ss_pred             cccCCc------------cc-----------------------cccceeccccCCccccCChh-h----cCcccEEECCC
Confidence            865432            11                       46788899999988876542 2    36889999999


Q ss_pred             CcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccC---hhhhcCCCcccEEEccCCc
Q psy3329         453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS---PTVLRHNRAITSIKLVGNP  529 (694)
Q Consensus       453 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~---~~~~~~~~~l~~l~l~~N~  529 (694)
                      |+|+.++...   .++|+.|+|++|+++.+++. +   .  ..|+.|++++|+|++++   |..+..++.+..+++.+||
T Consensus       356 N~L~~LP~~l---p~~L~~LdLs~N~Lt~LP~~-l---~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        356 NQITVLPETL---PPTITTLDVSRNALTNLPEN-L---P--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CCCCcCChhh---cCCcCEEECCCCcCCCCCHh-H---H--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            9988765532   36889999999999876543 3   2  36888899999988653   2334445778889999999


Q ss_pred             ccc
Q psy3329         530 WKC  532 (694)
Q Consensus       530 ~~c  532 (694)
                      +..
T Consensus       427 ls~  429 (754)
T PRK15370        427 FSE  429 (754)
T ss_pred             ccH
Confidence            874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=3.3e-18  Score=188.32  Aligned_cols=162  Identities=23%  Similarity=0.303  Sum_probs=71.1

Q ss_pred             CcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEE
Q psy3329         164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL  243 (694)
Q Consensus       164 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  243 (694)
                      ...|+++++.++.++..     -.++|+.|++++|.+ ..+|...+   ++|+.|++++|.++..+..    -.++|+.|
T Consensus       180 ~~~L~L~~~~LtsLP~~-----Ip~~L~~L~Ls~N~L-tsLP~~l~---~nL~~L~Ls~N~LtsLP~~----l~~~L~~L  246 (754)
T PRK15370        180 KTELRLKILGLTTIPAC-----IPEQITTLILDNNEL-KSLPENLQ---GNIKTLYANSNQLTSIPAT----LPDTIQEM  246 (754)
T ss_pred             ceEEEeCCCCcCcCCcc-----cccCCcEEEecCCCC-CcCChhhc---cCCCEEECCCCccccCChh----hhccccEE
Confidence            44555555555544321     123455555555555 23443221   3555555555555433211    11345555


Q ss_pred             EccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCccc
Q psy3329         244 SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE  323 (694)
Q Consensus       244 ~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  323 (694)
                      ++++|++..++.. +  .++|+.|++++|.+.. +|..+.  ++|+.|++++|+++.++.. +  .++|+.|++++|.++
T Consensus       247 ~Ls~N~L~~LP~~-l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        247 ELSINRITELPER-L--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLT  317 (754)
T ss_pred             ECcCCccCcCChh-H--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccc
Confidence            5555555544422 1  1245555555555443 222221  2455555555555443321 1  123444555555444


Q ss_pred             CcCchhhcCCCCCCEEeCCCCCCcccC
Q psy3329         324 TLESGLFQNLTHLSVLELNNCGLTRLN  350 (694)
Q Consensus       324 ~~~~~~l~~l~~L~~L~L~~n~l~~~~  350 (694)
                      .++...   .++|+.|++++|.++.++
T Consensus       318 ~LP~~l---~~sL~~L~Ls~N~Lt~LP  341 (754)
T PRK15370        318 ALPETL---PPGLKTLEAGENALTSLP  341 (754)
T ss_pred             cCCccc---cccceeccccCCccccCC
Confidence            433221   134444445554444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.8e-18  Score=177.60  Aligned_cols=286  Identities=23%  Similarity=0.277  Sum_probs=144.9

Q ss_pred             EEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccch---hhhccCCCCccEEEccCcCCCcCC------cccccCCC
Q psy3329         192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADL---SVALKPLTKLHRLSLRNCGLSRLP------ANTFHRFT  262 (694)
Q Consensus       192 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~l~~n~i~~~~------~~~~~~~~  262 (694)
                      .|+|..+.+.+.-....+..++.|+.++++++.++....   ...+...++++.++++++.+...+      ...+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            355666665433333455666667777777777654321   223344556667776666554211      12233444


Q ss_pred             CccEEeCCCCCCcccchhhcCCC---CCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCC-CCCCE
Q psy3329         263 CLQELDISHNPLIDAFTALLSPL---ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL-THLSV  338 (694)
Q Consensus       263 ~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~  338 (694)
                      +|+.|++++|.+.+..+..+..+   ++|++|++++|.++.....                    .....+..+ ++|+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~--------------------~l~~~l~~~~~~L~~  141 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR--------------------LLAKGLKDLPPALEK  141 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH--------------------HHHHHHHhCCCCceE
Confidence            55555555555543332222222   2245555544444321100                    111122333 44555


Q ss_pred             EeCCCCCCcccC----ccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCC
Q psy3329         339 LELNNCGLTRLN----ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY  414 (694)
Q Consensus       339 L~L~~n~l~~~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~  414 (694)
                      |++++|.++...    ...+.   .++.|++|++++|.++...       +..++..                  +..  
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~-------~~~l~~~------------------l~~--  191 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALR---ANRDLKELNLANNGIGDAG-------IRALAEG------------------LKA--  191 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHH---hCCCcCEEECcCCCCchHH-------HHHHHHH------------------HHh--
Confidence            555555544211    11111   3345555555555543210       0001110                  011  


Q ss_pred             CCCCCceEEcCCCCCcccCCC----CCCCcCCCCccEEEccCCcCCccCCCC-----CCCCCCCCEEEccCCccCCCcch
Q psy3329         415 TYPDLEELRLSGNPLHVLPTG----NLLPPQLSRLRSLDLSRCKIDYLPPNV-----FNNTRNITSLNLANNNLSMTSEL  485 (694)
Q Consensus       415 ~~~~L~~L~Ls~n~l~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~  485 (694)
                       +++|+.|++++|.+++....    .+  ..+++|++|++++|.+++.....     ....+.|++|++++|.++.....
T Consensus       192 -~~~L~~L~L~~n~i~~~~~~~l~~~~--~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~  268 (319)
T cd00116         192 -NCNLEVLDLNNNGLTDEGASALAETL--ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK  268 (319)
T ss_pred             -CCCCCEEeccCCccChHHHHHHHHHh--cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence             45666666666666543221    22  45677888888888777521111     11347888888888888732222


Q ss_pred             hh-hhhcccCCCcEEECCCCccccc----ChhhhcCC-CcccEEEccCCcc
Q psy3329         486 SF-QFLDVLLELESLDLSNNNLTHI----SPTVLRHN-RAITSIKLVGNPW  530 (694)
Q Consensus       486 ~~-~~l~~l~~L~~L~ls~N~l~~~----~~~~~~~~-~~l~~l~l~~N~~  530 (694)
                      .+ ..+..+++|+.+++++|.++..    ....+... +.++.+++.+|||
T Consensus       269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            11 2336667889999999998864    33344444 6788888888886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=2.4e-17  Score=169.27  Aligned_cols=207  Identities=21%  Similarity=0.180  Sum_probs=123.1

Q ss_pred             EEECcCCCCc--chhhhhhcCCCCcEEEccCCcCCcc----ChhhccCCCCCCeEECCCCCCCc------cCCCCCCCCC
Q psy3329          21 TINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKI----NPQFFTNLTTLNKLDLSGNPLRI------IEPGVFDPLT   88 (694)
Q Consensus        21 ~L~Ls~~~l~--~i~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~------~~~~~~~~l~   88 (694)
                      .|+|..+.++  .....+..+..|+.|+++++.++..    .+..+...+.|++|+++++.+..      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4566666665  3345666677788888888776432    23345666778888888776652      1122356677


Q ss_pred             CCCEEeCCCCcCCccChhhhcCCCC---CCEEECCCCcCCccc--hhhhhhcCC-CCCCEEEccCCCCCCCC----cccc
Q psy3329          89 SLEYLMLNRCNLTYISPSAFDNLNH---LKTLELSQNKLKSHI--DWTLVLGNL-GKLDTLDLRQSGISNLP----DNVF  158 (694)
Q Consensus        89 ~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~~~--~~~~~~~~l-~~L~~L~L~~n~i~~~~----~~~~  158 (694)
                      +|++|++++|.+....+..+..+.+   |+.|++++|.+...+  .+...+..+ ++|+.|++++|.++...    ...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            8888888888887655555555444   888888888776311  222345566 78888888888877322    2345


Q ss_pred             CCCCCCcEEeCCCCCCCCcchhhhc--ccCCCcccEEeCCCCCCCCCCC---hhhhhcCCCCcEEEcCCCCCCc
Q psy3329         159 ANNTWLRNLNLAENELIDLDVATTL--GQNLVHLDSLDLSNCHLKGPLS---EDAFVNATKLRTLYLSGNPLSA  227 (694)
Q Consensus       159 ~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~L~~n~l~~  227 (694)
                      ..+++|++|++++|.+.+.......  ...+++|++|++++|.+.+...   ...+..+++|+.|++++|.+++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            6677888888888887653221110  0123456666666655521110   0123344555555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.50  E-value=2.8e-16  Score=133.62  Aligned_cols=157  Identities=25%  Similarity=0.382  Sum_probs=91.9

Q ss_pred             cCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCE
Q psy3329          13 NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY   92 (694)
Q Consensus        13 ~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~   92 (694)
                      +.++.+++.|.||+|.++.+|..+..+.+|+.|++.+|+++.+ |..++.++.|+.|+++-|++...+.+ |+.++.|++
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~lprg-fgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcCccc-cCCCchhhh
Confidence            3345556666666666666666666666666666666666665 44566666666666666665544333 666666666


Q ss_pred             EeCCCCcCCc-cChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCC
Q psy3329          93 LMLNRCNLTY-ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAE  171 (694)
Q Consensus        93 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  171 (694)
                      |||.+|++.. ..|..|..++.|+.|+++.|.+.   -+|..++++++|+.|.+..|.+-.++. .++.+..|++|.+.+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe---~lp~dvg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiqg  182 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE---ILPPDVGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQG  182 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc---cCChhhhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhccc
Confidence            6666665543 33455555666666666666554   334455666666666666666555553 244555555555555


Q ss_pred             CCCC
Q psy3329         172 NELI  175 (694)
Q Consensus       172 n~l~  175 (694)
                      |.++
T Consensus       183 nrl~  186 (264)
T KOG0617|consen  183 NRLT  186 (264)
T ss_pred             ceee
Confidence            5544

>KOG0617|consensus

Probab=99.50  E-value=4.7e-16  Score=132.27  Aligned_cols=111  Identities=29%  Similarity=0.461  Sum_probs=71.7

Q ss_pred             CCCCceEEcCCCCCcc-cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccC
Q psy3329         416 YPDLEELRLSGNPLHV-LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLL  494 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~  494 (694)
                      +|.|+.|||.+|++.. ..|+.|  -.+..|+.|+|+.|.+.-++++ .+++++||.|.+..|.+-..+. .+   +.++
T Consensus       101 ~p~levldltynnl~e~~lpgnf--f~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpk-ei---g~lt  173 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNF--FYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPK-EI---GDLT  173 (264)
T ss_pred             CchhhhhhccccccccccCCcch--hHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcH-HH---HHHH
Confidence            5555666666555543 234444  3566677777777777777666 4777888888888887765543 33   7778


Q ss_pred             CCcEEECCCCcccccChhh--hcCCCcccEEEccCCccccc
Q psy3329         495 ELESLDLSNNNLTHISPTV--LRHNRAITSIKLVGNPWKCD  533 (694)
Q Consensus       495 ~L~~L~ls~N~l~~~~~~~--~~~~~~l~~l~l~~N~~~c~  533 (694)
                      .|++|.+.+|+++.++|+.  +.-..+-+...+..|||.-.
T Consensus       174 ~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~p  214 (264)
T KOG0617|consen  174 RLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNP  214 (264)
T ss_pred             HHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence            8888888888888777652  11122334556778888653

>KOG3207|consensus

Probab=99.30  E-value=5.6e-13  Score=130.49  Aligned_cols=169  Identities=24%  Similarity=0.278  Sum_probs=111.3

Q ss_pred             hcCCCCCCEEEccCCCCCCCCc-cccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcC
Q psy3329         134 LGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA  212 (694)
Q Consensus       134 ~~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  212 (694)
                      -.++.+|+...|.++.+..... .....|++++.|+|+.|-+........+...+++|+.|+++.|.+........-..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            3456677777777766654443 345667778888888877776666555556788888888888877443333333356


Q ss_pred             CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccc-hhhcCCCCCCcEE
Q psy3329         213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAF-TALLSPLESLEHL  291 (694)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L  291 (694)
                      ++|+.|.|+.|.++.......+..+|+|+.|++..|..-.+.......+..|+.|+|++|++.... ....+.++.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            788888888888886666666677888888888888533333333445567888888887765532 1234556666666


Q ss_pred             ECcCCCCcccC
Q psy3329         292 DMGYSNLQRIS  302 (694)
Q Consensus       292 ~L~~n~l~~~~  302 (694)
                      +++.+.+..+.
T Consensus       277 nls~tgi~si~  287 (505)
T KOG3207|consen  277 NLSSTGIASIA  287 (505)
T ss_pred             hccccCcchhc
Confidence            66666665443

>KOG3207|consensus

Probab=99.28  E-value=1.2e-12  Score=128.14  Aligned_cols=187  Identities=23%  Similarity=0.248  Sum_probs=120.7

Q ss_pred             CCCCCCEEeCCCCcCCccCh-hhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCcc-ccCCCCC
Q psy3329          86 PLTSLEYLMLNRCNLTYISP-SAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDN-VFANNTW  163 (694)
Q Consensus        86 ~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~~~~  163 (694)
                      ++.+|+.+.|.++....... .....|++++.|+|+.|-+.....+......+|+|+.|+++.|.+...... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            46677777777776655432 345667888888888887776656666677788888888888877643322 1224677


Q ss_pred             CcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEE
Q psy3329         164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL  243 (694)
Q Consensus       164 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  243 (694)
                      |+.|.++.|.++.-++..... .+++|+.|++..|.. -.+.......+..|+.|+|++|++.+.+.......++.|+.|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~-~fPsl~~L~L~~N~~-~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILL-TFPSLEVLYLEANEI-ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHH-hCCcHHHhhhhcccc-cceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            888888888877544443333 788888888888742 112222344566788888888887766644455777888888


Q ss_pred             EccCcCCCcCCcccc------cCCCCccEEeCCCCCC
Q psy3329         244 SLRNCGLSRLPANTF------HRFTCLQELDISHNPL  274 (694)
Q Consensus       244 ~l~~n~i~~~~~~~~------~~~~~L~~L~L~~n~~  274 (694)
                      +++.+.+.++.....      ..+++|+.|++..|++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            888887776532111      2344555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=4.5e-12  Score=113.86  Aligned_cols=123  Identities=29%  Similarity=0.335  Sum_probs=32.4

Q ss_pred             CcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhcc-CCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCc
Q psy3329          24 LNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFT-NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY  102 (694)
Q Consensus        24 Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  102 (694)
                      |..+.|..++. +.++.++++|+|++|.|+.+.  .+. .+.+|+.|++++|.++.+..  +..++.|++|++++|.|+.
T Consensus         4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen    4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S
T ss_pred             ccccccccccc-ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCc
Confidence            33444444442 334445677777777766653  233 45667777777777766643  5666777777777777766


Q ss_pred             cChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCC
Q psy3329         103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISN  152 (694)
Q Consensus       103 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~  152 (694)
                      +.+.....+++|+.|++++|++.+...+ ..+..+++|+.|++.+|.++.
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGG
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccc
Confidence            6432223466677777777766654443 234556666666666665543

>KOG1909|consensus

Probab=99.24  E-value=4.3e-12  Score=121.12  Aligned_cols=160  Identities=26%  Similarity=0.347  Sum_probs=89.3

Q ss_pred             CCCcccEEeCCCCCCCCCCChhh-------------hhcCCCCcEEEcCCCCCCccch---hhhccCCCCccEEEccCcC
Q psy3329         186 NLVHLDSLDLSNCHLKGPLSEDA-------------FVNATKLRTLYLSGNPLSAADL---SVALKPLTKLHRLSLRNCG  249 (694)
Q Consensus       186 ~~~~L~~L~l~~n~~~~~~~~~~-------------~~~~~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~l~~n~  249 (694)
                      .+..|++|.|.+|.+ |...-..             ...-++|+++...+|++.+.+.   ...+..++.|+.+.++.|.
T Consensus       118 s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~  196 (382)
T KOG1909|consen  118 SCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG  196 (382)
T ss_pred             hccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc
Confidence            455566666666655 3222111             2234677777777777655442   2234556777777777776


Q ss_pred             CCcC----CcccccCCCCccEEeCCCCCCcc----cchhhcCCCCCCcEEECcCCCCcccChhhh-----cCCCCCcEEe
Q psy3329         250 LSRL----PANTFHRFTCLQELDISHNPLID----AFTALLSPLESLEHLDMGYSNLQRISRSTF-----LKMTSLKTLI  316 (694)
Q Consensus       250 i~~~----~~~~~~~~~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~  316 (694)
                      |..-    ....|..|++|+.|+|.+|-++.    .+...+..+++|+.|++++|.+..-...+|     ...|+|+.|.
T Consensus       197 I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~  276 (382)
T KOG1909|consen  197 IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLE  276 (382)
T ss_pred             ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceec
Confidence            6521    22445667777777777776654    233445566667777777776664433333     2345666666


Q ss_pred             ccCCcccCcC----chhhcCCCCCCEEeCCCCCC
Q psy3329         317 LSGNKLETLE----SGLFQNLTHLSVLELNNCGL  346 (694)
Q Consensus       317 L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l  346 (694)
                      |.+|.|+.-.    ...+...+.|..|+|++|.+
T Consensus       277 l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  277 LAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6666555211    11223345555555555555

>KOG1909|consensus

Probab=99.23  E-value=2.3e-12  Score=122.95  Aligned_cols=197  Identities=24%  Similarity=0.296  Sum_probs=126.9

Q ss_pred             hhcCCCCCcEEeccCCcccCcCc----hhhcCCCCCCEEeCCCCCCcccCccc----------cccCCCCCCCCeeeCCC
Q psy3329         305 TFLKMTSLKTLILSGNKLETLES----GLFQNLTHLSVLELNNCGLTRLNETV----------FHENYTYPDLEELRLSG  370 (694)
Q Consensus       305 ~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~----------~~~~~~~~~L~~L~Ls~  370 (694)
                      ++.++++|+.|+||+|.+..-.+    ..+.++..|+.|.|.+|.+.......          -.....-+.|+.+...+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            34455666666666665543222    22345666777777777665433222          11222557788888888


Q ss_pred             CCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCC----CCCCCcCCCCcc
Q psy3329         371 NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT----GNLLPPQLSRLR  446 (694)
Q Consensus       371 n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~~~l~~L~  446 (694)
                      |++...+.....                         ..|..   .+.|+.+.++.|.|..-..    ..|  ..+++|+
T Consensus       167 Nrlen~ga~~~A-------------------------~~~~~---~~~leevr~~qN~I~~eG~~al~eal--~~~~~Le  216 (382)
T KOG1909|consen  167 NRLENGGATALA-------------------------EAFQS---HPTLEEVRLSQNGIRPEGVTALAEAL--EHCPHLE  216 (382)
T ss_pred             cccccccHHHHH-------------------------HHHHh---ccccceEEEecccccCchhHHHHHHH--HhCCcce
Confidence            887654431100                         01222   6788888888887754322    234  6789999


Q ss_pred             EEEccCCcCCc----cCCCCCCCCCCCCEEEccCCccCCCcchhh--hhhcccCCCcEEECCCCccccc----ChhhhcC
Q psy3329         447 SLDLSRCKIDY----LPPNVFNNTRNITSLNLANNNLSMTSELSF--QFLDVLLELESLDLSNNNLTHI----SPTVLRH  516 (694)
Q Consensus       447 ~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~l~~L~~L~ls~N~l~~~----~~~~~~~  516 (694)
                      +|||..|.++.    .....++.+++|+.|++++|.+..-...+|  ..-...++|+++.+.+|.++.-    ....+..
T Consensus       217 vLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e  296 (382)
T KOG1909|consen  217 VLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE  296 (382)
T ss_pred             eeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence            99999998876    334556778899999999999876544333  1124578999999999998862    2233455


Q ss_pred             CCcccEEEccCCccc
Q psy3329         517 NRAITSIKLVGNPWK  531 (694)
Q Consensus       517 ~~~l~~l~l~~N~~~  531 (694)
                      .+.|..|++++|.+.
T Consensus       297 k~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  297 KPDLEKLNLNGNRLG  311 (382)
T ss_pred             chhhHHhcCCccccc
Confidence            788999999999994

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=4.8e-11  Score=107.23  Aligned_cols=113  Identities=30%  Similarity=0.352  Sum_probs=47.0

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +..+++|+|.+|.|+.+....   ..+.+|+.|||++|.|+.+..  +..++.|++|++++|+|+.+.+...   ..+++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~---~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~---~~lp~   89 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLG---ATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLD---KNLPN   89 (175)
T ss_dssp             ------------------S-----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHH---HH-TT
T ss_pred             ccccccccccccccccccchh---hhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchH---HhCCc
Confidence            567899999999999875432   257899999999999999864  7889999999999999998755332   46899


Q ss_pred             CcEEECCCCcccccCh-hhhcCCCcccEEEccCCccccccCc
Q psy3329         496 LESLDLSNNNLTHISP-TVLRHNRAITSIKLVGNPWKCDCNI  536 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~-~~~~~~~~l~~l~l~~N~~~c~c~~  536 (694)
                      |++|++++|+|..... ..+..+++|+.|++.+||+.-....
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y  131 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY  131 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH
Confidence            9999999999988533 5677899999999999999544433

>PLN03150 hypothetical protein; Provisional

Probab=99.12  E-value=1.2e-10  Score=128.56  Aligned_cols=113  Identities=22%  Similarity=0.283  Sum_probs=102.6

Q ss_pred             CCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCc
Q psy3329         418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE  497 (694)
Q Consensus       418 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~  497 (694)
                      .++.|+|++|.+.+..+..+  ..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.+|..+   +.+++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i--~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l---~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDI--SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL---GQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCHHH--hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH---hcCCCCC
Confidence            47889999999999888888  899999999999999999888889999999999999999999999888   8999999


Q ss_pred             EEECCCCcccccChhhhcCC-CcccEEEccCCccccccC
Q psy3329         498 SLDLSNNNLTHISPTVLRHN-RAITSIKLVGNPWKCDCN  535 (694)
Q Consensus       498 ~L~ls~N~l~~~~~~~~~~~-~~l~~l~l~~N~~~c~c~  535 (694)
                      .|+|++|+++|.+|..+... ..+..+++.+|+..|.++
T Consensus       494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             EEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999999988877653 466789999999999765

>KOG1259|consensus

Probab=99.10  E-value=2.4e-11  Score=113.25  Aligned_cols=135  Identities=30%  Similarity=0.366  Sum_probs=100.0

Q ss_pred             CCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEE
Q psy3329         236 PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL  315 (694)
Q Consensus       236 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  315 (694)
                      ....|+++++++|.|+.+. ++..-.|.++.|++++|.+..+-  .+..+++|++|||++|.++.+.. .-.++.++++|
T Consensus       282 TWq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchhhhh-hhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhh-hHhhhcCEeee
Confidence            3466888888888888776 45666788888888888876553  36678888888888888877653 33467788888


Q ss_pred             eccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCC
Q psy3329         316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD  378 (694)
Q Consensus       316 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  378 (694)
                      .|++|.+..+..  +..+-+|..||+++|+|..+....  ...++|.|+.+.|.+|++..+++
T Consensus       358 ~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  358 KLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             ehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCccccch
Confidence            888888876643  667778888888888887754322  22278889999999998876654

>KOG1259|consensus

Probab=99.05  E-value=2.2e-11  Score=113.48  Aligned_cols=134  Identities=26%  Similarity=0.338  Sum_probs=102.8

Q ss_pred             CCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329          16 NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML   95 (694)
Q Consensus        16 ~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L   95 (694)
                      .+.|+++|||+|.|+.+.++..-.|.++.|++++|++..+..  ++.+++|+.||||+|.++.+. ++-..+.+.+.|.|
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKL  359 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhh-hhHhhhcCEeeeeh
Confidence            346788888888888888888888888888888888877743  778888888888888877653 33345677888888


Q ss_pred             CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCc
Q psy3329          96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD  155 (694)
Q Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  155 (694)
                      +.|.+...  ..++++-+|..|++++|++..+... ..++++|.|+++.|.+|.+..++.
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCCccccch
Confidence            88887776  4577788888888888888765443 457788888888888888776654

>KOG0532|consensus

Probab=99.02  E-value=1.4e-11  Score=124.57  Aligned_cols=197  Identities=27%  Similarity=0.384  Sum_probs=112.6

Q ss_pred             CCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEe
Q psy3329          15 DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM   94 (694)
Q Consensus        15 ~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~   94 (694)
                      ++..-...+|+.|.+..+|..+..+-.|+.+.+..|.+..+ |.++..+..|++|+|+.|+++..+.. +..|+ |+.|.
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli  149 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLI  149 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEE
Confidence            34445556666666666666666666666666666666555 55566666666666666666665544 33343 66666


Q ss_pred             CCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCC
Q psy3329          95 LNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL  174 (694)
Q Consensus        95 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l  174 (694)
                      +++|+++.+ |..++.+.+|..|+.+.|.+.   .+|..++++.+|+.|++..|++..+++... .              
T Consensus       150 ~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~---slpsql~~l~slr~l~vrRn~l~~lp~El~-~--------------  210 (722)
T KOG0532|consen  150 VSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQ---SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-S--------------  210 (722)
T ss_pred             EecCccccC-CcccccchhHHHhhhhhhhhh---hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-C--------------
Confidence            666666666 444556666666666666655   344556666666666666666666554322 2              


Q ss_pred             CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCC-CCccEEEccCc
Q psy3329         175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-TKLHRLSLRNC  248 (694)
Q Consensus       175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l-~~L~~L~l~~n  248 (694)
                                   -.|..||++.|++ ..+|. .|.+|+.|++|.|.+|.+..-+......+. .=.+.|+..-|
T Consensus       211 -------------LpLi~lDfScNki-s~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  211 -------------LPLIRLDFSCNKI-SYLPV-DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -------------CceeeeecccCce-eecch-hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence                         2344455555554 44443 366666666666666666554433322222 22344555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=6e-10  Score=117.69  Aligned_cols=86  Identities=40%  Similarity=0.570  Sum_probs=45.1

Q ss_pred             CCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCc
Q psy3329         418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE  497 (694)
Q Consensus       418 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~  497 (694)
                      .|++|.+++|.+...+. .+  ..+.++..+.+.+|++..+ +..++.+++++.|++++|.++.+.+  +   ..+.+++
T Consensus       210 ~L~~l~~~~N~~~~~~~-~~--~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~---~~~~~l~  280 (394)
T COG4886         210 ALEELDLSNNSIIELLS-SL--SNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--L---GSLTNLR  280 (394)
T ss_pred             hhhhhhhcCCcceecch-hh--hhcccccccccCCceeeec-cchhccccccceecccccccccccc--c---cccCccC
Confidence            35555555553222221 11  4455555555666655543 2224555566666666666665544  2   5566666


Q ss_pred             EEECCCCcccccChh
Q psy3329         498 SLDLSNNNLTHISPT  512 (694)
Q Consensus       498 ~L~ls~N~l~~~~~~  512 (694)
                      .|++++|.++..++.
T Consensus       281 ~L~~s~n~~~~~~~~  295 (394)
T COG4886         281 ELDLSGNSLSNALPL  295 (394)
T ss_pred             EEeccCccccccchh
Confidence            666666666655443

>KOG0531|consensus

Probab=98.96  E-value=9.4e-11  Score=123.84  Aligned_cols=241  Identities=27%  Similarity=0.390  Sum_probs=127.6

Q ss_pred             CccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEecc
Q psy3329         239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS  318 (694)
Q Consensus       239 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  318 (694)
                      .++.+.+..|.+..+. ..+..+++|+.|++.+|.+..+... +..+++|++|++++|.|+.+.  .+..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~~~-~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKIL-NHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhhhh-cccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc--chhhccchhhheec
Confidence            3333344444444321 1233445555555555554443221 344556666666666666554  24455556666666


Q ss_pred             CCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccch
Q psy3329         319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDF  398 (694)
Q Consensus       319 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~  398 (694)
                      +|.+..+..  +..++.|+.+++++|++..+......   .+..++.+++.+|.+..+....                  
T Consensus       149 ~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~---~~~~l~~l~l~~n~i~~i~~~~------------------  205 (414)
T KOG0531|consen  149 GNLISDISG--LESLKSLKLLDLSYNRIVDIENDELS---ELISLEELDLGGNSIREIEGLD------------------  205 (414)
T ss_pred             cCcchhccC--CccchhhhcccCCcchhhhhhhhhhh---hccchHHHhccCCchhcccchH------------------
Confidence            666665543  44466666666666666665541011   4566777777777665433210                  


Q ss_pred             hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCC--CccEEEccCCcCCccCCCCCCCCCCCCEEEccC
Q psy3329         399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS--RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN  476 (694)
Q Consensus       399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  476 (694)
                                   .   +..+..+++..|.++.+.+..    .+.  +|+.+++++|++..++ ..+..+..+..|++.+
T Consensus       206 -------------~---~~~l~~~~l~~n~i~~~~~l~----~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  206 -------------L---LKKLVLLSLLDNKISKLEGLN----ELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSS  264 (414)
T ss_pred             -------------H---HHHHHHhhcccccceeccCcc----cchhHHHHHHhcccCcccccc-ccccccccccccchhh
Confidence                         0   223333455666655443322    122  2667777777766553 2245666777777777


Q ss_pred             CccCCCcchhhhhhcccCCCcEEECCCCccccc---Chh-hhcCCCcccEEEccCCcccc
Q psy3329         477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHI---SPT-VLRHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       477 N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~---~~~-~~~~~~~l~~l~l~~N~~~c  532 (694)
                      |++......     ...+.+..+....|.+...   ... .....+.++.+.+.+||..-
T Consensus       265 n~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  265 NRISNLEGL-----ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccc-----cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            777654332     3455566666666665532   111 13345666777777777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=5.4e-10  Score=82.46  Aligned_cols=59  Identities=47%  Similarity=0.679  Sum_probs=29.6

Q ss_pred             CccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCc
Q psy3329         444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNN  505 (694)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~  505 (694)
                      +|++|++++|+|+.+++.+|.++++|++|++++|+++.+.+..|   ..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f---~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAF---SNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTT---TTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHH---cCCCCCCEEeCcCCc
Confidence            44455555555555555555555555555555555554444444   444455555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=7.2e-10  Score=81.79  Aligned_cols=61  Identities=43%  Similarity=0.733  Sum_probs=58.5

Q ss_pred             CCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCcc
Q psy3329         417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL  479 (694)
Q Consensus       417 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  479 (694)
                      |+|+.|++++|.++.+++..|  .++++|++|++++|.++.+++.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f--~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSF--SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTT--TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHH--cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999999999999  9999999999999999999999999999999999999986

...

>KOG0531|consensus

Probab=98.93  E-value=1.1e-10  Score=123.32  Aligned_cols=246  Identities=28%  Similarity=0.354  Sum_probs=159.3

Q ss_pred             hcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCE
Q psy3329          37 LVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT  116 (694)
Q Consensus        37 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  116 (694)
                      ..+..++.++++.|.+..+ -..+..+.+|+.|++.+|.|..+... +..+++|++|++++|.|+.+  ..+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc--cchhhccchhh
Confidence            3455666666777766653 23466777777788888777776543 56677788888888877777  34566667788


Q ss_pred             EECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCc-cccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeC
Q psy3329         117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL  195 (694)
Q Consensus       117 L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  195 (694)
                      |++++|.+..+..    +..++.|+.+++++|.+..+.. . ...+.+++.+.+.+|.+..+....    .+..+..+++
T Consensus       145 L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~----~~~~l~~~~l  215 (414)
T KOG0531|consen  145 LNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD----LLKKLVLLSL  215 (414)
T ss_pred             heeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH----HHHHHHHhhc
Confidence            8888887775543    4446777788888887777665 2 456677777788887776554333    2333444466


Q ss_pred             CCCCCCCCCChhhhhcCC--CCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCC
Q psy3329         196 SNCHLKGPLSEDAFVNAT--KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP  273 (694)
Q Consensus       196 ~~n~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~  273 (694)
                      ..|.+.. +.  .+....  +|+.+++++|.+....  ..+..+..+..+++..+.+..+..  +...+.+..+....+.
T Consensus       216 ~~n~i~~-~~--~l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  216 LDNKISK-LE--GLNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNK  288 (414)
T ss_pred             cccccee-cc--CcccchhHHHHHHhcccCcccccc--ccccccccccccchhhcccccccc--ccccchHHHhccCcch
Confidence            6666521 11  122222  3788888888877652  134667888888888888776643  4455667777777777


Q ss_pred             Cccc---chh-hcCCCCCCcEEECcCCCCcccC
Q psy3329         274 LIDA---FTA-LLSPLESLEHLDMGYSNLQRIS  302 (694)
Q Consensus       274 ~~~~---~~~-~~~~l~~L~~L~L~~n~l~~~~  302 (694)
                      +...   ... .....+.++.+.+..|.+....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  289 LALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             hcchhhhhccccccccccccccccccCcccccc
Confidence            6532   111 1455677888888888776554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.91  E-value=1.2e-09  Score=115.30  Aligned_cols=198  Identities=32%  Similarity=0.427  Sum_probs=146.0

Q ss_pred             EEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCC-CCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329          21 TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLT-TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN   99 (694)
Q Consensus        21 ~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~   99 (694)
                      .++++.+.+......+...+.++.|++.+|.+..+.+ ....+. +|+.|++++|++..++ ..+..+++|+.|++++|.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhhh-hhhhccccccccccCCch
Confidence            5777777775444455566889999999998888854 345553 8999999999988874 237888999999999999


Q ss_pred             CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcch
Q psy3329         100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV  179 (694)
Q Consensus       100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  179 (694)
                      +..++ ...+.++.|+.|++++|++..+.   ........|+++.+++|.+...+ ..+..+.++..+.+.+|.+.... 
T Consensus       175 l~~l~-~~~~~~~~L~~L~ls~N~i~~l~---~~~~~~~~L~~l~~~~N~~~~~~-~~~~~~~~l~~l~l~~n~~~~~~-  248 (394)
T COG4886         175 LSDLP-KLLSNLSNLNNLDLSGNKISDLP---PEIELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLP-  248 (394)
T ss_pred             hhhhh-hhhhhhhhhhheeccCCccccCc---hhhhhhhhhhhhhhcCCcceecc-hhhhhcccccccccCCceeeecc-
Confidence            98884 33447888999999999888544   33445566899999988544333 23677778888888888876531 


Q ss_pred             hhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchh
Q psy3329         180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLS  231 (694)
Q Consensus       180 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  231 (694)
                       ... ..++.++.|++++|.+ ..++.  +....+++.|+++++.+......
T Consensus       249 -~~~-~~l~~l~~L~~s~n~i-~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         249 -ESI-GNLSNLETLDLSNNQI-SSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             -chh-ccccccceeccccccc-ccccc--ccccCccCEEeccCccccccchh
Confidence             122 2677799999999988 55543  77889999999999988766544

>KOG4658|consensus

Probab=98.89  E-value=1e-09  Score=123.65  Aligned_cols=321  Identities=24%  Similarity=0.284  Sum_probs=187.1

Q ss_pred             cCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCc--CCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC
Q psy3329          13 NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECT--LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL   90 (694)
Q Consensus        13 ~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L   90 (694)
                      ..+....+.+.+-++.+..++... .++.|+.|-+..|.  +..+....|..++.|++|||++|.--+-.|..++.+-+|
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             ccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            344457788888888888777544 34578888888875  677777778889999999999875444456668888999


Q ss_pred             CEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCC--CCCCccccCCCCCCcEEe
Q psy3329          91 EYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGI--SNLPDNVFANNTWLRNLN  168 (694)
Q Consensus        91 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~~~~L~~L~  168 (694)
                      ++|+++++.+..+ |..++++.+|.+|++..+.-..  .++.....+.+|++|.+.....  +......+.++.+|+.+.
T Consensus       598 ryL~L~~t~I~~L-P~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls  674 (889)
T KOG4658|consen  598 RYLDLSDTGISHL-PSGLGNLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS  674 (889)
T ss_pred             hcccccCCCcccc-chHHHHHHhhheeccccccccc--cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence            9999999988877 7788889999999988775432  2245566688899988876541  122222334444555544


Q ss_pred             CCCCCCCCcchhhhcccCCCccc----EEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhh----cc-CCCC
Q psy3329         169 LAENELIDLDVATTLGQNLVHLD----SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA----LK-PLTK  239 (694)
Q Consensus       169 l~~n~l~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----l~-~l~~  239 (694)
                      ......   ...... .....|.    .+.+.++.. ... ...+..+.+|+.|.+.++.+........    .. .+++
T Consensus       675 ~~~~s~---~~~e~l-~~~~~L~~~~~~l~~~~~~~-~~~-~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~  748 (889)
T KOG4658|consen  675 ITISSV---LLLEDL-LGMTRLRSLLQSLSIEGCSK-RTL-ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN  748 (889)
T ss_pred             eecchh---HhHhhh-hhhHHHHHHhHhhhhccccc-cee-ecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence            432221   000000 0122222    222222222 111 2246677888888888887754332110    01 1223


Q ss_pred             ccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCccc-ChhhhcCCCCCcEEecc
Q psy3329         240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI-SRSTFLKMTSLKTLILS  318 (694)
Q Consensus       240 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  318 (694)
                      +..+.+.++.....+ .+.-..++|+.|.+..+...+.+......+..+..+.+..+.+... .-...++++++..+.+.
T Consensus       749 l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~  827 (889)
T KOG4658|consen  749 LSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS  827 (889)
T ss_pred             HHHHHhhcccccccc-chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence            444444444222222 1122347888888888877766655555556666655666655554 23344555666655555


Q ss_pred             CCcccCcCchh---hcCCCCCCEEeCCCC
Q psy3329         319 GNKLETLESGL---FQNLTHLSVLELNNC  344 (694)
Q Consensus       319 ~n~l~~~~~~~---l~~l~~L~~L~L~~n  344 (694)
                      .=.+..+....   +..+|.+.++.+.+|
T Consensus       828 ~~~l~~~~ve~~p~l~~~P~~~~~~i~~~  856 (889)
T KOG4658|consen  828 FLKLEELIVEECPKLGKLPLLSTLTIVGC  856 (889)
T ss_pred             ccchhheehhcCcccccCccccccceecc
Confidence            54433332211   344566666666665

>KOG4658|consensus

Probab=98.89  E-value=1.1e-09  Score=123.44  Aligned_cols=333  Identities=24%  Similarity=0.248  Sum_probs=208.2

Q ss_pred             CCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCC--CCccCCCCCCCCCCCCEEeCCCCcCCccC
Q psy3329          27 NPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP--LRIIEPGVFDPLTSLEYLMLNRCNLTYIS  104 (694)
Q Consensus        27 ~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  104 (694)
                      ..+..+|. .......+...+.+|.+..+.. . ..++.|++|-+.+|.  +..++...|..++.|++|||++|.=-+..
T Consensus       511 ~~~~~~~~-~~~~~~~rr~s~~~~~~~~~~~-~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L  587 (889)
T KOG4658|consen  511 VGLSEIPQ-VKSWNSVRRMSLMNNKIEHIAG-S-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL  587 (889)
T ss_pred             cCcccccc-ccchhheeEEEEeccchhhccC-C-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence            34444542 2234677888888887766632 2 345689999999986  67777777899999999999988555555


Q ss_pred             hhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcc
Q psy3329         105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLG  184 (694)
Q Consensus       105 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  184 (694)
                      |..++.+.+|++|+++++.+.   .+|..++++..|.+|++..+......+.....+++|++|.+...............
T Consensus       588 P~~I~~Li~LryL~L~~t~I~---~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el  664 (889)
T KOG4658|consen  588 PSSIGELVHLRYLDLSDTGIS---HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL  664 (889)
T ss_pred             ChHHhhhhhhhcccccCCCcc---ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh
Confidence            899999999999999999987   67789999999999999988866666777778999999999776532222111111


Q ss_pred             cCCCcccEEeCCCCCCCCCCChhhhhcCCCCc----EEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccC
Q psy3329         185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR----TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR  260 (694)
Q Consensus       185 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~  260 (694)
                      .++.+|+.+.......  .+ ...+..++.|.    .+.+.++.....  ...+..+.+|+.|.+.++.+.++.......
T Consensus       665 ~~Le~L~~ls~~~~s~--~~-~e~l~~~~~L~~~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~  739 (889)
T KOG4658|consen  665 ENLEHLENLSITISSV--LL-LEDLLGMTRLRSLLQSLSIEGCSKRTL--ISSLGSLGNLEELSILDCGISEIVIEWEES  739 (889)
T ss_pred             hcccchhhheeecchh--Hh-HhhhhhhHHHHHHhHhhhhccccccee--ecccccccCcceEEEEcCCCchhhcccccc
Confidence            2555555555533322  01 11233333333    333322222222  224577899999999999887654322211


Q ss_pred             ------CCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCc-CchhhcCC
Q psy3329         261 ------FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL-ESGLFQNL  333 (694)
Q Consensus       261 ------~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l  333 (694)
                            ++++..+.+.++...... .+..-.++|+.|.+..+.....+......+..+..+.+..+.+.+. .....+.+
T Consensus       740 ~~~~~~f~~l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l  818 (889)
T KOG4658|consen  740 LIVLLCFPNLSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGL  818 (889)
T ss_pred             cchhhhHHHHHHHHhhcccccccc-chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCC
Confidence                  234444444444332221 1223468999999998866655445556666677666776666665 23344555


Q ss_pred             CCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCC
Q psy3329         334 THLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN  371 (694)
Q Consensus       334 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n  371 (694)
                      +++..+.+..=.+..+..........+|.+.++.+.++
T Consensus       819 ~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~  856 (889)
T KOG4658|consen  819 PQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGC  856 (889)
T ss_pred             ceeEecccCccchhheehhcCcccccCccccccceecc
Confidence            55555555443333322222111225677777777775

>KOG0532|consensus

Probab=98.88  E-value=1.7e-10  Score=117.04  Aligned_cols=177  Identities=23%  Similarity=0.255  Sum_probs=147.3

Q ss_pred             CCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEE
Q psy3329          14 LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL   93 (694)
Q Consensus        14 ~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L   93 (694)
                      .-|..|+.+.|..|.+..+|..+.++..|++|+|+.|+++.++ ..+..|+ |+.|-+++|+++.++++ ++.+.+|..|
T Consensus        95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp-~~lC~lp-Lkvli~sNNkl~~lp~~-ig~~~tl~~l  171 (722)
T KOG0532|consen   95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLP-DGLCDLP-LKVLIVSNNKLTSLPEE-IGLLPTLAHL  171 (722)
T ss_pred             HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCC-hhhhcCc-ceeEEEecCccccCCcc-cccchhHHHh
Confidence            3445788899999999999999999999999999999998874 4455554 99999999999998776 7889999999


Q ss_pred             eCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCC
Q psy3329          94 MLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE  173 (694)
Q Consensus        94 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~  173 (694)
                      |.+.|.+..+ |..++.+.+|+.|.+..|++..   +|..+. .=.|..||++.|++..++. .|.++..|++|.|.+|.
T Consensus       172 d~s~nei~sl-psql~~l~slr~l~vrRn~l~~---lp~El~-~LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  172 DVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLED---LPEELC-SLPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNP  245 (722)
T ss_pred             hhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhh---CCHHHh-CCceeeeecccCceeecch-hhhhhhhheeeeeccCC
Confidence            9999999998 5668999999999999999874   556666 4468999999999999886 58999999999999999


Q ss_pred             CCCcchhhhcccCCCcccEEeCCCCC
Q psy3329         174 LIDLDVATTLGQNLVHLDSLDLSNCH  199 (694)
Q Consensus       174 l~~~~~~~~~~~~~~~L~~L~l~~n~  199 (694)
                      ++.-+......+...-.++|+...|.
T Consensus       246 LqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  246 LQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             CCCChHHHHhccceeeeeeecchhcc
Confidence            98766554444344456777777663

>PLN03150 hypothetical protein; Provisional

Probab=98.72  E-value=3.9e-08  Score=108.79  Aligned_cols=107  Identities=24%  Similarity=0.281  Sum_probs=73.3

Q ss_pred             CcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCC
Q psy3329          42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ  121 (694)
Q Consensus        42 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  121 (694)
                      ++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|.+.+..|..++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56677777777766677777777777777777777765565677777777777777777776677777777777777777


Q ss_pred             CcCCccchhhhhhcCC-CCCCEEEccCCCC
Q psy3329         122 NKLKSHIDWTLVLGNL-GKLDTLDLRQSGI  150 (694)
Q Consensus       122 n~l~~~~~~~~~~~~l-~~L~~L~L~~n~i  150 (694)
                      |.+.  +.+|..+... .++..+++.+|..
T Consensus       500 N~l~--g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLS--GRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             Cccc--ccCChHHhhccccCceEEecCCcc
Confidence            7766  3445555442 3556667766643

>KOG2120|consensus

Probab=98.62  E-value=2.6e-09  Score=99.91  Aligned_cols=178  Identities=25%  Similarity=0.268  Sum_probs=113.2

Q ss_pred             CCCEEEccCCCCCCC-CccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCC-CCCCCChhhhhcCCCCc
Q psy3329         139 KLDTLDLRQSGISNL-PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCH-LKGPLSEDAFVNATKLR  216 (694)
Q Consensus       139 ~L~~L~L~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~  216 (694)
                      .|++|||+...++.- ....+..|.+|+.|.+.++.+.+. +...+. .-.+|+.|+++.+. ++...-.-.+..|+.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            467777776665521 123355667777777777766542 222222 45667777777764 22222223567788888


Q ss_pred             EEEcCCCCCCccchhhhccC-CCCccEEEccCcC--CC--cCCcccccCCCCccEEeCCCCCC-cccchhhcCCCCCCcE
Q psy3329         217 TLYLSGNPLSAADLSVALKP-LTKLHRLSLRNCG--LS--RLPANTFHRFTCLQELDISHNPL-IDAFTALLSPLESLEH  290 (694)
Q Consensus       217 ~L~L~~n~l~~~~~~~~l~~-l~~L~~L~l~~n~--i~--~~~~~~~~~~~~L~~L~L~~n~~-~~~~~~~~~~l~~L~~  290 (694)
                      .|+|++|.+........+.+ -++|+.|+++++.  +.  .+. .....+++|.+|||++|.. +......|..++.|++
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            99998887765554433332 3678888888872  22  221 2235789999999998754 3344455677889999


Q ss_pred             EECcCCCCcccChhh---hcCCCCCcEEeccCCc
Q psy3329         291 LDMGYSNLQRISRST---FLKMTSLKTLILSGNK  321 (694)
Q Consensus       291 L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~  321 (694)
                      |.++.|.  .++|..   +...|.|.+|+..++-
T Consensus       343 lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  343 LSLSRCY--DIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eehhhhc--CCChHHeeeeccCcceEEEEecccc
Confidence            9998886  445543   4567899999988763

>KOG2982|consensus

Probab=98.56  E-value=1.6e-08  Score=94.64  Aligned_cols=81  Identities=21%  Similarity=0.428  Sum_probs=49.2

Q ss_pred             CCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCC-cccccCCCCccEEeCCCCCCcccchh------hcCC
Q psy3329         212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP-ANTFHRFTCLQELDISHNPLIDAFTA------LLSP  284 (694)
Q Consensus       212 ~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~------~~~~  284 (694)
                      +|++..+.+..|++.+.........++.+..|+++.++|.+.. .+.+..+++|..|.++++.+.+....      .++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            4666666666666655554444556667777777777766432 24466777777777777776653321      2345


Q ss_pred             CCCCcEEE
Q psy3329         285 LESLEHLD  292 (694)
Q Consensus       285 l~~L~~L~  292 (694)
                      +++++.|+
T Consensus       278 L~~v~vLN  285 (418)
T KOG2982|consen  278 LTKVQVLN  285 (418)
T ss_pred             ccceEEec
Confidence            66666654

>KOG2120|consensus

Probab=98.55  E-value=3.5e-09  Score=99.01  Aligned_cols=185  Identities=19%  Similarity=0.155  Sum_probs=119.9

Q ss_pred             CCCCEEeCCCCcCCccC-hhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC-CCCCCc-cccCCCCCC
Q psy3329          88 TSLEYLMLNRCNLTYIS-PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG-ISNLPD-NVFANNTWL  164 (694)
Q Consensus        88 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~~~~L  164 (694)
                      +.|++|||++..|+... -..+..|.+|+.|.+.++++.+  ++...+..-.+|+.|+++.+. ++.... -.+.+|+.|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            34778888877666422 2345677788888888888774  555667777788888887653 332221 235677888


Q ss_pred             cEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCC-CCCC-hhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccE
Q psy3329         165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK-GPLS-EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR  242 (694)
Q Consensus       165 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  242 (694)
                      ..|+++.+.+....+......--++|+.|+++++.-. +.-. ......+++|..|||++|..-.......+..++.|++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            8888888876654443333334567888888886420 1111 1123568999999999885433344455688899999


Q ss_pred             EEccCcC-CCcCCcccccCCCCccEEeCCCCCC
Q psy3329         243 LSLRNCG-LSRLPANTFHRFTCLQELDISHNPL  274 (694)
Q Consensus       243 L~l~~n~-i~~~~~~~~~~~~~L~~L~L~~n~~  274 (694)
                      |.++.|. |..-..-.+...|+|.+|++.++--
T Consensus       343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             eehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            9999884 2211112356778999999988743

>KOG2982|consensus

Probab=98.46  E-value=7.9e-08  Score=90.13  Aligned_cols=86  Identities=26%  Similarity=0.269  Sum_probs=49.8

Q ss_pred             CCEEeCCCCcCCccCh-hhh-cCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEE
Q psy3329          90 LEYLMLNRCNLTYISP-SAF-DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL  167 (694)
Q Consensus        90 L~~L~L~~n~l~~~~~-~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L  167 (694)
                      ++.|.+.++.|..... ..| ..++.++.++|.+|.+++-..+...+.++|.|+.|+++.|.+.......-....+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            4455555555554322 122 34567777888888777655555667777888888887777664433211234455555


Q ss_pred             eCCCCCCC
Q psy3329         168 NLAENELI  175 (694)
Q Consensus       168 ~l~~n~l~  175 (694)
                      -|.+..+.
T Consensus       127 VLNgT~L~  134 (418)
T KOG2982|consen  127 VLNGTGLS  134 (418)
T ss_pred             EEcCCCCC
Confidence            55555443

>KOG1859|consensus

Probab=98.46  E-value=1.9e-09  Score=112.31  Aligned_cols=126  Identities=28%  Similarity=0.295  Sum_probs=57.8

Q ss_pred             CCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEc
Q psy3329          66 LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL  145 (694)
Q Consensus        66 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L  145 (694)
                      |.+.+.+.|.+..+.. ++.-++.|+.|+|++|+++..  ..+..|++|++|||++|.+..+..+..  ..+. |..|.+
T Consensus       166 L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~--~gc~-L~~L~l  239 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSM--VGCK-LQLLNL  239 (1096)
T ss_pred             HhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccch--hhhh-heeeee
Confidence            4444444444443322 244445555555555555554  244555555555555555543332211  1122 555555


Q ss_pred             cCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCC
Q psy3329         146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL  200 (694)
Q Consensus       146 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  200 (694)
                      ++|.++.+-.  +.++.+|+.|++++|-+.+..-..++. .+..|+.|+|.+|.+
T Consensus       240 rnN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLw-sLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  240 RNNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLW-SLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHH-HHHHHHHHhhcCCcc
Confidence            5555544432  344555555555555444433333322 344455555555544

>KOG4341|consensus

Probab=98.41  E-value=4e-08  Score=96.53  Aligned_cols=61  Identities=20%  Similarity=0.230  Sum_probs=25.1

Q ss_pred             CCCCcEEEcCCC-CCCccchhhhccCCCCccEEEccCc-CCCcCCcccc-cCCCCccEEeCCCC
Q psy3329         212 ATKLRTLYLSGN-PLSAADLSVALKPLTKLHRLSLRNC-GLSRLPANTF-HRFTCLQELDISHN  272 (694)
Q Consensus       212 ~~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~-~~~~~L~~L~L~~n  272 (694)
                      +..|+.|..+++ .+++........++++|+.|.+..| ++++.....+ .+++.|+.+++..+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~  356 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC  356 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence            444555555443 2223222222344455555555555 2332221111 23344555555444

>KOG4341|consensus

Probab=98.38  E-value=2.9e-08  Score=97.53  Aligned_cols=230  Identities=23%  Similarity=0.194  Sum_probs=138.0

Q ss_pred             CCcEEEccCCcCCccC--hhhccCCCCCCeEECCCCCCCccCCCCC----CCCCCCCEEeCCCC-cCCccChh-hhcCCC
Q psy3329          41 SLLYLYMQECTLSKIN--PQFFTNLTTLNKLDLSGNPLRIIEPGVF----DPLTSLEYLMLNRC-NLTYISPS-AFDNLN  112 (694)
Q Consensus        41 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~~~~~----~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~  112 (694)
                      .|+.|.++++.-.+..  ...-..++++++|++.++.  .+....+    ..|++|++|++..| .++...-+ .-..++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            5777888777433322  1223577888888887765  2222212    34678888888875 45554333 234578


Q ss_pred             CCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCcccc----CCCCCCcEEeCCCCCCCCcchhhhcccCCC
Q psy3329         113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF----ANNTWLRNLNLAENELIDLDVATTLGQNLV  188 (694)
Q Consensus       113 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  188 (694)
                      +|++|+++.+....-..+.....++..++.+.+.+|.  +.....+    ..+..+.++++..+...+......+...+.
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            8888888887543223344456667777777666543  2222221    344556666655554332222233334678


Q ss_pred             cccEEeCCCCCCCCCCChhh-hhcCCCCcEEEcCCCC-CCccchhhhccCCCCccEEEccCcCCCcC--CcccccCCCCc
Q psy3329         189 HLDSLDLSNCHLKGPLSEDA-FVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCGLSRL--PANTFHRFTCL  264 (694)
Q Consensus       189 ~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~i~~~--~~~~~~~~~~L  264 (694)
                      .|+.++.+++...+..+... -..+++|+.|-++.++ +++......-.+++.|+.+++..+.....  ....-.+++.|
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            89999998886533332222 2457899999999885 66666555457789999999998854321  11223467888


Q ss_pred             cEEeCCCCCC
Q psy3329         265 QELDISHNPL  274 (694)
Q Consensus       265 ~~L~L~~n~~  274 (694)
                      +.+.+++|..
T Consensus       375 r~lslshce~  384 (483)
T KOG4341|consen  375 RVLSLSHCEL  384 (483)
T ss_pred             ccCChhhhhh
Confidence            8888887754

>KOG1859|consensus

Probab=98.33  E-value=1.2e-08  Score=106.48  Aligned_cols=132  Identities=27%  Similarity=0.282  Sum_probs=108.1

Q ss_pred             CCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCC
Q psy3329          17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN   96 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~   96 (694)
                      ..|.+.++++|.+..+..++.-++.++.|+|++|++....  .+..|++|++|||++|.+..++.-.-.++. |+.|.++
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            3688889999999999888999999999999999988874  788999999999999999887764444555 9999999


Q ss_pred             CCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCC
Q psy3329          97 RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP  154 (694)
Q Consensus        97 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~  154 (694)
                      +|.++.+  ..+.++.+|+.||+++|-+.....+ ..++.+..|+.|.|.+|.+-.-+
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCccccCH
Confidence            9988877  5578899999999999988765443 23566788889999998876444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.26  E-value=2e-06  Score=74.86  Aligned_cols=122  Identities=28%  Similarity=0.432  Sum_probs=39.0

Q ss_pred             hhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCC
Q psy3329          35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL  114 (694)
Q Consensus        35 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  114 (694)
                      +|..+++|+.+.+.. .+..+...+|..+++|+.+.+.++ +..+....|.++++|+.+.+.+ .+..+....|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            334444444444432 334444444444444444444442 4444444444444444444433 3333333444444444


Q ss_pred             CEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCC
Q psy3329         115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL  164 (694)
Q Consensus       115 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L  164 (694)
                      +.+.+..+ +..++.  ..+.++ +|+.+.+.. .+..+....|.++++|
T Consensus        84 ~~i~~~~~-~~~i~~--~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGS--SSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHT--TTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEch--hhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            44444332 222222  223343 444444443 3344444445444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=7.9e-07  Score=82.49  Aligned_cols=87  Identities=22%  Similarity=0.221  Sum_probs=46.3

Q ss_pred             CCCceEEECcCCCCcc-----hhhhhhcCCCCcEEEccCCcCCcc----------ChhhccCCCCCCeEECCCCCCCccC
Q psy3329          16 NPGLITINLNANPIQP-----VEGAFLVARSLLYLYMQECTLSKI----------NPQFFTNLTTLNKLDLSGNPLRIIE   80 (694)
Q Consensus        16 ~~~L~~L~Ls~~~l~~-----i~~~~~~~~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~Ls~n~~~~~~   80 (694)
                      +..+..++||+|.|..     +...+.+-.+|+..++++--....          ...++.+|++|+..+||+|.+..-.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4566777777777763     224444556666666654211110          1123456666666666666665322


Q ss_pred             CC----CCCCCCCCCEEeCCCCcCCc
Q psy3329          81 PG----VFDPLTSLEYLMLNRCNLTY  102 (694)
Q Consensus        81 ~~----~~~~l~~L~~L~L~~n~l~~  102 (694)
                      +.    .+++-+.|.+|.+++|.+..
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCc
Confidence            21    23445566666666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=2.5e-06  Score=79.30  Aligned_cols=90  Identities=17%  Similarity=0.210  Sum_probs=48.7

Q ss_pred             cCCCCcEEEcCCCCCCccchh---hhccCCCCccEEEccCcCCCcC--Cc---ccccCCCCccEEeCCCCCCccc----c
Q psy3329         211 NATKLRTLYLSGNPLSAADLS---VALKPLTKLHRLSLRNCGLSRL--PA---NTFHRFTCLQELDISHNPLIDA----F  278 (694)
Q Consensus       211 ~~~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~i~~~--~~---~~~~~~~~L~~L~L~~n~~~~~----~  278 (694)
                      .-|.|+.+....|++......   ..+.....|+++.+..|.|..-  ..   .-+..+.+|+.|+|.+|-++..    .
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            456777777777766544322   1233345677777777766532  11   1123456666667666665532    2


Q ss_pred             hhhcCCCCCCcEEECcCCCCcc
Q psy3329         279 TALLSPLESLEHLDMGYSNLQR  300 (694)
Q Consensus       279 ~~~~~~l~~L~~L~L~~n~l~~  300 (694)
                      ..++...+.|+.|.+..|.++.
T Consensus       235 a~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHhcccchhhhccccchhhcc
Confidence            2334444555666666555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.18  E-value=4.5e-06  Score=72.62  Aligned_cols=126  Identities=21%  Similarity=0.317  Sum_probs=80.9

Q ss_pred             ccCcccCCCCCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCC
Q psy3329           8 YNDRRNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDP   86 (694)
Q Consensus         8 ~~~~~~~~~~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~   86 (694)
                      .+..+|.++.+|+.+.+.. .+..++ ..|..+++|+.+.+.++ +..+...+|.+++.|+.+.+.+ .+..+....|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4567899999999999985 688888 88999999999999884 8888888999999999999976 777788888999


Q ss_pred             CCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCC
Q psy3329          87 LTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD  141 (694)
Q Consensus        87 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  141 (694)
                      +++|+.+++..+ +..+....|.++ +|+.+.+.. .+..+..  ..|.++++|+
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~--~~F~~~~~l~  129 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE--NAFKNCTKLK  129 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS------GGG------
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC--ccccccccCC
Confidence            999999999875 777777888888 999999876 4444433  4577776664

>KOG1644|consensus

Probab=98.11  E-value=5.8e-06  Score=73.65  Aligned_cols=107  Identities=27%  Similarity=0.332  Sum_probs=63.8

Q ss_pred             CcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCC
Q psy3329          42 LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ  121 (694)
Q Consensus        42 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  121 (694)
                      =+.+++++.++..+.. .=.-..+...+||++|++..+..  |.+++.|.+|.|++|.|+.+.|.--.-+++|+.|.+.+
T Consensus        21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchhh-ccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            3455555555444321 00123455667777777766543  66777777777777777777665555566777777777


Q ss_pred             CcCCccchhhhhhcCCCCCCEEEccCCCCCC
Q psy3329         122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISN  152 (694)
Q Consensus       122 n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~  152 (694)
                      |.+..++.+. .+..||+|++|.+-+|.++.
T Consensus        98 Nsi~~l~dl~-pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   98 NSIQELGDLD-PLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             cchhhhhhcc-hhccCCccceeeecCCchhc
Confidence            7766554432 24455666666666665553

>KOG1644|consensus

Probab=98.07  E-value=7e-06  Score=73.15  Aligned_cols=105  Identities=27%  Similarity=0.368  Sum_probs=63.8

Q ss_pred             CCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCc
Q psy3329         418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE  497 (694)
Q Consensus       418 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~  497 (694)
                      ....+||++|.+..+.  .|  ..++.|.+|.|++|+|+.+.|..-.-+++|+.|.|.+|+|....  .+..+..++.|+
T Consensus        43 ~~d~iDLtdNdl~~l~--~l--p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~--dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD--NL--PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG--DLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhcc--cC--CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh--hcchhccCCccc
Confidence            3444555555554332  22  45666777777777777776665555666777777777665432  123336677777


Q ss_pred             EEECCCCcccccCh---hhhcCCCcccEEEccCC
Q psy3329         498 SLDLSNNNLTHISP---TVLRHNRAITSIKLVGN  528 (694)
Q Consensus       498 ~L~ls~N~l~~~~~---~~~~~~~~l~~l~l~~N  528 (694)
                      .|.+-+|..+...-   ..+..+++++.+|+.+-
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            77777777665322   24556788888887654

>KOG4579|consensus

Probab=98.01  E-value=5.4e-07  Score=74.74  Aligned_cols=106  Identities=17%  Similarity=0.220  Sum_probs=51.8

Q ss_pred             CCceEEECcCCCCcchhh---hhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEE
Q psy3329          17 PGLITINLNANPIQPVEG---AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL   93 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L   93 (694)
                      ..+..++|+++++..+++   .+.....|+..+|++|.+...++..-..++.++.|++++|.++.++.+ +..++.|+.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhc
Confidence            344555666666655553   233334444455555555555444334444555555555555555433 4555555555


Q ss_pred             eCCCCcCCccChhhhcCCCCCCEEECCCCcC
Q psy3329          94 MLNRCNLTYISPSAFDNLNHLKTLELSQNKL  124 (694)
Q Consensus        94 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  124 (694)
                      +++.|.+... |..+..+.+|-.|+..+|.+
T Consensus       106 Nl~~N~l~~~-p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  106 NLRFNPLNAE-PRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             ccccCccccc-hHHHHHHHhHHHhcCCCCcc
Confidence            5555544444 33333344444444444433

>KOG1187|consensus

Probab=97.94  E-value=8.2e-07  Score=91.13  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             ccCCCccccccccCcc----cceeecccceeeehhhhhhhhHHHHHHHhhHh
Q psy3329         625 TRAAPSYINMEKLNSK----SFLTLGNFGLISVGVIILSAMVYFSFYARHLY  672 (694)
Q Consensus       625 ~~~~~s~~~l~~~~~~----~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~  672 (694)
                      ....|+|.++++|+++    ++||+||||.||+|++.||++||||.......
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~  112 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSG  112 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCC
Confidence            4567899999999544    89999999999999999999999996666553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=8.7e-06  Score=54.68  Aligned_cols=37  Identities=46%  Similarity=0.678  Sum_probs=17.8

Q ss_pred             CccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCC
Q psy3329         444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSM  481 (694)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  481 (694)
                      +|++|++++|+|+.+++. +.++++|+.|++++|+|+.
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCC
Confidence            455555555555554432 4455555555555555543

...

>KOG4579|consensus

Probab=97.90  E-value=1.2e-06  Score=72.78  Aligned_cols=113  Identities=18%  Similarity=0.265  Sum_probs=69.5

Q ss_pred             ccEEEccCcCCCcCCc--ccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEec
Q psy3329         240 LHRLSLRNCGLSRLPA--NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL  317 (694)
Q Consensus       240 L~~L~l~~n~i~~~~~--~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  317 (694)
                      +..++|++|.+-.++.  ..+.....|+..+|++|.+....+..-...+.++.|+|.+|+|+.++.. +..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence            3444555554443321  1122334556666666666655555445556677777777777777654 777777777777


Q ss_pred             cCCcccCcCchhhcCCCCCCEEeCCCCCCcccCcccc
Q psy3329         318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF  354 (694)
Q Consensus       318 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  354 (694)
                      ..|.+...+...+. +.+|-.|+..+|.+..++...|
T Consensus       108 ~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDVDLF  143 (177)
T ss_pred             ccCccccchHHHHH-HHhHHHhcCCCCccccCcHHHh
Confidence            77777666554444 7777777777777777766644

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=1.8e-05  Score=53.17  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             CceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCcc
Q psy3329          18 GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKI   55 (694)
Q Consensus        18 ~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~   55 (694)
                      +|++|++++|+|+++|..+.++++|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555554455555555555555555443

...

>KOG3665|consensus

Probab=97.87  E-value=1.3e-05  Score=88.57  Aligned_cols=155  Identities=23%  Similarity=0.243  Sum_probs=95.3

Q ss_pred             CCCCEEeCCCCcCC-ccChhhh-cCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCc
Q psy3329          88 TSLEYLMLNRCNLT-YISPSAF-DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR  165 (694)
Q Consensus        88 ~~L~~L~L~~n~l~-~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~  165 (694)
                      .+|++|++++...- .-.+..+ ..+|+|+.|.+++-.+.. ..+.....++|+|..||+++++++.+  ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            56788888775332 1223333 347888888888776654 33455677788888888888888877  3467788888


Q ss_pred             EEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCC--Ch---hhhhcCCCCcEEEcCCCCCCccchhhhccCCCCc
Q psy3329         166 NLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPL--SE---DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL  240 (694)
Q Consensus       166 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L  240 (694)
                      .|.+.+-.+........+. ++++|+.||+|........  ..   +.-..+|+|+.||.+++.+........+...++|
T Consensus       199 ~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            8888777766543333333 6777777777765542111  00   1112366777777776666655555455555555


Q ss_pred             cEEEcc
Q psy3329         241 HRLSLR  246 (694)
Q Consensus       241 ~~L~l~  246 (694)
                      +.+.+-
T Consensus       278 ~~i~~~  283 (699)
T KOG3665|consen  278 QQIAAL  283 (699)
T ss_pred             hhhhhh
Confidence            555443

>KOG3665|consensus

Probab=97.69  E-value=3.2e-05  Score=85.57  Aligned_cols=108  Identities=25%  Similarity=0.322  Sum_probs=50.9

Q ss_pred             CCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccE
Q psy3329         163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR  242 (694)
Q Consensus       163 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  242 (694)
                      +|++|++++.....-......+..+|+|++|.+++-.+...--.....++|+|..||+++.+++...   +++.+++|++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~---GIS~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS---GISRLKNLQV  199 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH---HHhccccHHH
Confidence            3444444444333223333334455666666665544422111123345566666666665555442   3455566666


Q ss_pred             EEccCcCCCcC-CcccccCCCCccEEeCCCCC
Q psy3329         243 LSLRNCGLSRL-PANTFHRFTCLQELDISHNP  273 (694)
Q Consensus       243 L~l~~n~i~~~-~~~~~~~~~~L~~L~L~~n~  273 (694)
                      |.+.+-.+..- .-..+..+++|+.||+|...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            65555444421 11123445566666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.00036  Score=71.09  Aligned_cols=138  Identities=20%  Similarity=0.223  Sum_probs=66.5

Q ss_pred             hcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC-cCCccChhhhcCCCCCC
Q psy3329          37 LVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC-NLTYISPSAFDNLNHLK  115 (694)
Q Consensus        37 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~  115 (694)
                      ..+.+++.|++++|.++.++ .   --.+|++|.++++.--...|+.+  .++|++|++++| .+..+ |      .+|+
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP-~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-P------~sLe  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLP-V---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-P------ESVR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccC-C---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-c------cccc
Confidence            34566667777666665552 1   12346666666533222223223  246777777766 44333 2      2466


Q ss_pred             EEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeC
Q psy3329         116 TLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL  195 (694)
Q Consensus       116 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  195 (694)
                      .|++..+....+..+|      ++|+.|.+.+++........-.-.++|++|++.+|.....+.  .   -..+|+.|.+
T Consensus       116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~--~---LP~SLk~L~l  184 (426)
T PRK15386        116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPE--K---LPESLQSITL  184 (426)
T ss_pred             eEEeCCCCCcccccCc------chHhheeccccccccccccccccCCcccEEEecCCCcccCcc--c---ccccCcEEEe
Confidence            6666655554433433      235555554322110000000011457777777665432211  0   2346777777


Q ss_pred             CCC
Q psy3329         196 SNC  198 (694)
Q Consensus       196 ~~n  198 (694)
                      +.+
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            665

>TIGR00864 PCC polycystin cation channel protein

Probab=97.57  E-value=6.6e-05  Score=91.35  Aligned_cols=67  Identities=25%  Similarity=0.467  Sum_probs=54.7

Q ss_pred             ECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCC---CceeecCCCCccccccc
Q psy3329         500 DLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGD---IGVLVGSTTPTEIGFGA  566 (694)
Q Consensus       500 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  566 (694)
                      ||++|+|+.+.+..|..+++|+.|+|++|||.|||.+.||..|++.....   .....|..|....+..+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L   70 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPL   70 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCc
Confidence            68899999999999999999999999999999999999999999875322   22345777776666555

Note: this model has been restricted to the amino half because for technical reasons.

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.57  E-value=0.00058  Score=69.64  Aligned_cols=54  Identities=13%  Similarity=0.135  Sum_probs=27.2

Q ss_pred             CCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCC-CCcccChhhhcCCCCCcEEeccCC
Q psy3329         260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS-NLQRISRSTFLKMTSLKTLILSGN  320 (694)
Q Consensus       260 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  320 (694)
                      .+.+++.|++++|.+... |.   -..+|++|.++++ .++.++ ..+  .++|+.|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCc
Confidence            356667777777655443 21   1235666666653 332222 222  245666666655

>KOG1947|consensus

Probab=97.35  E-value=8.4e-05  Score=81.08  Aligned_cols=64  Identities=31%  Similarity=0.399  Sum_probs=34.5

Q ss_pred             CCCcccEEeCCCCCCCCCCChhhhh-cCCCCcEEEcCCCC-CCccchhhhccCCCCccEEEccCcC
Q psy3329         186 NLVHLDSLDLSNCHLKGPLSEDAFV-NATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCG  249 (694)
Q Consensus       186 ~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~  249 (694)
                      .+.+|+.++++.+..........+. .+++|+.|.+.++. +++.........++.|++|+++.|.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4556666666665521222222222 25666666666665 5555555555566666666666663

>KOG2123|consensus

Probab=97.27  E-value=1.5e-05  Score=74.53  Aligned_cols=82  Identities=26%  Similarity=0.339  Sum_probs=54.9

Q ss_pred             CCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccCh-hhhcCCCCCCEE
Q psy3329          39 ARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISP-SAFDNLNHLKTL  117 (694)
Q Consensus        39 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L  117 (694)
                      +.+.+.|++.+|++..|  ....+++.|++|.|+-|+|+.+.+  |..|++|++|+|..|.|.++.- ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45667777777777766  235677777777777777777655  6677777777777777666521 234566677777


Q ss_pred             ECCCCcC
Q psy3329         118 ELSQNKL  124 (694)
Q Consensus       118 ~l~~n~l  124 (694)
                      .|..|.-
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            7766643

>KOG2739|consensus

Probab=97.20  E-value=0.00015  Score=67.79  Aligned_cols=103  Identities=24%  Similarity=0.400  Sum_probs=57.7

Q ss_pred             CCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCC--CCcccchhhcCCCCCCcEEECcCCCCcccCh-hhhcCCCCC
Q psy3329         236 PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN--PLIDAFTALLSPLESLEHLDMGYSNLQRISR-STFLKMTSL  312 (694)
Q Consensus       236 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  312 (694)
                      .+..|+.+++.+..++.+.  .|..+++|+.|.++.|  .+.+.++.....+|+|+++++++|+|..+.. ..+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3455666666666666553  3556778888888888  4444444444455777777777777653221 123345556


Q ss_pred             cEEeccCCcccCcCc---hhhcCCCCCCEEe
Q psy3329         313 KTLILSGNKLETLES---GLFQNLTHLSVLE  340 (694)
Q Consensus       313 ~~L~L~~n~l~~~~~---~~l~~l~~L~~L~  340 (694)
                      ..|++.+|..+....   ..|.-+++|++|+
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            666666665443221   2333444554444

>KOG2739|consensus

Probab=97.17  E-value=0.00022  Score=66.75  Aligned_cols=88  Identities=26%  Similarity=0.287  Sum_probs=42.1

Q ss_pred             CCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC--cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCC
Q psy3329          62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC--NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGK  139 (694)
Q Consensus        62 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  139 (694)
                      .+..|+.|++.+..++.+..  |..+++|++|.++.|  .+.+-.+....++++|++|++++|++..+..+ ..+..+.+
T Consensus        41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcc
Confidence            34444555554444443322  444556666666666  33332222233446666666666655543222 12344455


Q ss_pred             CCEEEccCCCCCC
Q psy3329         140 LDTLDLRQSGISN  152 (694)
Q Consensus       140 L~~L~L~~n~i~~  152 (694)
                      |..|++.+|..+.
T Consensus       118 L~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  118 LKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcccCCccc
Confidence            5555555555444

>KOG2123|consensus

Probab=97.16  E-value=2.9e-05  Score=72.59  Aligned_cols=101  Identities=26%  Similarity=0.269  Sum_probs=58.1

Q ss_pred             CCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcc
Q psy3329         111 LNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHL  190 (694)
Q Consensus       111 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  190 (694)
                      +.+.+.|++.++.+.++.    ....++.|+.|.|+-|.|+.+.+  +..|++|++|+|..|.|.+++-...+. ++++|
T Consensus        18 l~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLk-nlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLK-NLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHh-cCchh
Confidence            335556666666666432    34456677777777777766654  667777777777777776655444433 56666


Q ss_pred             cEEeCCCCCCCCCCCh----hhhhcCCCCcEE
Q psy3329         191 DSLDLSNCHLKGPLSE----DAFVNATKLRTL  218 (694)
Q Consensus       191 ~~L~l~~n~~~~~~~~----~~~~~~~~L~~L  218 (694)
                      +.|.|..|.-.+..+.    ..+.-+|+|++|
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL  122 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL  122 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence            6666655543333322    123345555554

>KOG1947|consensus

Probab=97.03  E-value=0.00021  Score=78.00  Aligned_cols=237  Identities=25%  Similarity=0.235  Sum_probs=111.5

Q ss_pred             cCCCCcEEEccCCc-CCccC-hhhccCCCCCCeEECCCC-CC-CccC---CCCCCCCCCCCEEeCCCCc-CCccChhhhc
Q psy3329          38 VARSLLYLYMQECT-LSKIN-PQFFTNLTTLNKLDLSGN-PL-RIIE---PGVFDPLTSLEYLMLNRCN-LTYISPSAFD  109 (694)
Q Consensus        38 ~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n-~~-~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~  109 (694)
                      .++.|+.|.+..+. +.... ......+++|+.|+++++ .. ....   ......+.+|+.|+++.+. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            35667776666652 22211 123456677777777652 11 1110   1123345667777777665 5544334443


Q ss_pred             C-CCCCCEEECCCCc-CCccchhhhhhcCCCCCCEEEccCCCCCCC--CccccCCCCCCcEEeCCCCCCCCcchhhhccc
Q psy3329         110 N-LNHLKTLELSQNK-LKSHIDWTLVLGNLGKLDTLDLRQSGISNL--PDNVFANNTWLRNLNLAENELIDLDVATTLGQ  185 (694)
Q Consensus       110 ~-l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  185 (694)
                      . +++|+.|.+.++. +++ ..+......++.|++|+++++....-  ......++++++.|.+....            
T Consensus       266 ~~c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~------------  332 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN------------  332 (482)
T ss_pred             hhCCCcceEccCCCCccch-hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC------------
Confidence            3 6677777766665 333 33444555666777777776554310  11112334444444332221            


Q ss_pred             CCCcccEEeCCCCCCCC--CCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCC
Q psy3329         186 NLVHLDSLDLSNCHLKG--PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC  263 (694)
Q Consensus       186 ~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~  263 (694)
                      .+..++.+.+..+....  .........+++++.+.+..+..........+.+++.|+ ..+...         ......
T Consensus       333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~  402 (482)
T KOG1947|consen  333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDS  402 (482)
T ss_pred             CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCc
Confidence            12233333333322111  222234556777777777776644444333445555552 222111         111122


Q ss_pred             ccEEeCCCCCCccc-chhhcCC-CCCCcEEECcCCC
Q psy3329         264 LQELDISHNPLIDA-FTALLSP-LESLEHLDMGYSN  297 (694)
Q Consensus       264 L~~L~L~~n~~~~~-~~~~~~~-l~~L~~L~L~~n~  297 (694)
                      ++.|+++.+..... .-..... +.+++.+++.++.
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            67777777654321 1111111 4556666666553

>KOG3653|consensus

Probab=96.85  E-value=0.0002  Score=72.25  Aligned_cols=52  Identities=15%  Similarity=0.302  Sum_probs=40.7

Q ss_pred             cccccCcccceeecccceeeehhhhhhhhHHHHHHHhhHhHhhhhhhhccccCCC
Q psy3329         633 NMEKLNSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQQRIRRNTFKSP  687 (694)
Q Consensus       633 ~l~~~~~~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~~~~~~~~~~~~~~  687 (694)
                      ++..+.--.+||+|+||.||||+|.+ ..||||++....+|-.|.+  |+-|+.|
T Consensus       208 ~l~pl~l~eli~~Grfg~V~KaqL~~-~~VAVKifp~~~kqs~~~E--k~Iy~lp  259 (534)
T KOG3653|consen  208 ELDPLQLLELIGRGRFGCVWKAQLDN-RLVAVKIFPEQEKQSFQNE--KNIYSLP  259 (534)
T ss_pred             cCCchhhHHHhhcCccceeehhhccC-ceeEEEecCHHHHHHHHhH--HHHHhcc
Confidence            34444455899999999999999955 7999999999999988876  3444444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.42  E-value=0.0074  Score=33.51  Aligned_cols=16  Identities=38%  Similarity=0.565  Sum_probs=7.5

Q ss_pred             ccEEEccCCcCCccCC
Q psy3329         445 LRSLDLSRCKIDYLPP  460 (694)
Q Consensus       445 L~~L~Ls~n~l~~~~~  460 (694)
                      |++|||++|+|+.+++
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4445555555544433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=94.70  E-value=0.015  Score=40.67  Aligned_cols=18  Identities=33%  Similarity=0.988  Sum_probs=17.0

Q ss_pred             CccccccCcHHHHHHHHh
Q psy3329         528 NPWKCDCNIADMWEWATR  545 (694)
Q Consensus       528 N~~~c~c~~~~~~~~~~~  545 (694)
                      |||.|||.+.|+..|+..
T Consensus         1 NP~~CdC~l~~~~~w~~~   18 (51)
T smart00082        1 NPFICDCELRWLLRWLQA   18 (51)
T ss_pred             CCccCcCCchHHHHHHHh
Confidence            899999999999999876

>KOG0193|consensus

Probab=94.34  E-value=0.0066  Score=63.67  Aligned_cols=36  Identities=17%  Similarity=0.113  Sum_probs=28.6

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhHhHhhhhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~~~~~  678 (694)
                      ..||.|.||+||+|.+ -| .||||++-...-.-.|.+
T Consensus       398 ~rIGsGsFGtV~Rg~w-hG-dVAVK~Lnv~~pt~~qlq  433 (678)
T KOG0193|consen  398 ERIGSGSFGTVYRGRW-HG-DVAVKLLNVDDPTPEQLQ  433 (678)
T ss_pred             ceeccccccceeeccc-cc-ceEEEEEecCCCCHHHHH
Confidence            7899999999999999 56 589999876655444444

>KOG4236|consensus

Probab=94.22  E-value=0.011  Score=60.86  Aligned_cols=53  Identities=21%  Similarity=0.202  Sum_probs=44.6

Q ss_pred             cccccccCcccceeecccceeeehhh-hhhhhHHHHHHHhhHhHhhhhhhhccc
Q psy3329         631 YINMEKLNSKSFLTLGNFGLISVGVI-ILSAMVYFSFYARHLYRTKQQRIRRNT  683 (694)
Q Consensus       631 ~~~l~~~~~~~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~~~~~~~~~~~~  683 (694)
                      +..+.++..++++|.|.||+||-|+- ..|+-||||+-..-+|-.+|+..-|+|
T Consensus       560 ~stvYQif~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~E  613 (888)
T KOG4236|consen  560 ISTVYQIFADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNE  613 (888)
T ss_pred             HHHHHHhhhHhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHH
Confidence            44556668899999999999999975 578899999999999999998766654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.96  E-value=0.037  Score=28.40  Aligned_cols=14  Identities=43%  Similarity=0.655  Sum_probs=5.0

Q ss_pred             CccEEEccCCcCCc
Q psy3329         444 RLRSLDLSRCKIDY  457 (694)
Q Consensus       444 ~L~~L~Ls~n~l~~  457 (694)
                      +|+.|+|++|+|+.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34444444444443

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.62  E-value=0.027  Score=31.25  Aligned_cols=9  Identities=78%  Similarity=0.973  Sum_probs=3.2

Q ss_pred             eEECCCCCC
Q psy3329          68 KLDLSGNPL   76 (694)
Q Consensus        68 ~L~Ls~n~~   76 (694)
                      +|++++|++
T Consensus         4 ~Ldls~n~l   12 (22)
T PF00560_consen    4 YLDLSGNNL   12 (22)
T ss_dssp             EEEETSSEE
T ss_pred             EEECCCCcC
Confidence            333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=93.47  E-value=0.027  Score=47.56  Aligned_cols=40  Identities=5%  Similarity=-0.095  Sum_probs=32.7

Q ss_pred             CcccceeecccceeeehhhhhhhhHHHHHHHhhHhHhhhh
Q psy3329         638 NSKSFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQQ  677 (694)
Q Consensus       638 ~~~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~~~~  677 (694)
                      .+.+-||.|+.|.||+|+|.+|+.||||+......+...+
T Consensus        14 fd~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i~~~i~~   53 (119)
T PF03109_consen   14 FDPEPLASASIAQVHRARLKDGEEVAVKVQRPGIEEQIEA   53 (119)
T ss_pred             CCcchhhheehhhheeeeecccchhhhhhcchHHHHHHHH
Confidence            3457799999999999999999999999977666554443

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.28  E-value=0.061  Score=31.22  Aligned_cols=21  Identities=48%  Similarity=0.835  Sum_probs=10.9

Q ss_pred             CCccEEEccCCcCCccCCCCC
Q psy3329         443 SRLRSLDLSRCKIDYLPPNVF  463 (694)
Q Consensus       443 ~~L~~L~Ls~n~l~~~~~~~~  463 (694)
                      ++|+.|+|++|+|+.+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.28  E-value=0.061  Score=31.22  Aligned_cols=21  Identities=48%  Similarity=0.835  Sum_probs=10.9

Q ss_pred             CCccEEEccCCcCCccCCCCC
Q psy3329         443 SRLRSLDLSRCKIDYLPPNVF  463 (694)
Q Consensus       443 ~~L~~L~Ls~n~l~~~~~~~~  463 (694)
                      ++|+.|+|++|+|+.+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=93.21  E-value=0.016  Score=62.24  Aligned_cols=32  Identities=22%  Similarity=0.173  Sum_probs=24.4

Q ss_pred             Ccccceeecccceeeehhh-----------------hhhhhHHHHHHHh
Q psy3329         638 NSKSFLTLGNFGLISVGVI-----------------ILSAMVYFSFYAR  669 (694)
Q Consensus       638 ~~~~~iG~G~fG~VYkg~l-----------------~~g~~vaV~~~~~  669 (694)
                      .-.+.||+|+||+||+|++                 .++..||||....
T Consensus       148 ~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~  196 (507)
T PLN03224        148 QLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNM  196 (507)
T ss_pred             eEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecc
Confidence            3348999999999999975                 3445788887643

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=92.88  E-value=0.028  Score=57.95  Aligned_cols=30  Identities=17%  Similarity=0.166  Sum_probs=24.3

Q ss_pred             cceeecccceeeehhh------hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI------ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l------~~g~~vaV~~~~~~  670 (694)
                      +.||.|+||.||+|+.      ..+..||||+....
T Consensus        13 ~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~   48 (338)
T cd05102          13 KVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEG   48 (338)
T ss_pred             eEeccCCcceEEEEEEeccCCcccchhhheeccccc
Confidence            5799999999999964      34568999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0473|consensus

Probab=92.73  E-value=0.002  Score=59.01  Aligned_cols=98  Identities=16%  Similarity=0.179  Sum_probs=66.7

Q ss_pred             cCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCcc
Q psy3329          25 NANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI  103 (694)
Q Consensus        25 s~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  103 (694)
                      +-..++.+| ..+......+.||++.|++..+ ...|+.++.|..|+++.|++...+.+ ++....++.+++..|..+..
T Consensus        26 s~s~~s~~~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~  103 (326)
T KOG0473|consen   26 SLSELSEIPVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQ  103 (326)
T ss_pred             CHHHhcccchhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhC
Confidence            333445566 5666777777888877776555 23466667777777877777666544 66667777777777766665


Q ss_pred             ChhhhcCCCCCCEEECCCCcCC
Q psy3329         104 SPSAFDNLNHLKTLELSQNKLK  125 (694)
Q Consensus       104 ~~~~l~~l~~L~~L~l~~n~l~  125 (694)
                       |.+++..++++++++-++.+.
T Consensus       104 -p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  104 -PKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             -CccccccCCcchhhhccCcch
Confidence             667777777877777777654

>KOG4308|consensus

Probab=91.84  E-value=0.0047  Score=65.66  Aligned_cols=91  Identities=31%  Similarity=0.329  Sum_probs=48.0

Q ss_pred             CCCCcEEECcCCCCcccCh----hhhcCCCC-CcEEeccCCcccCcCc----hhhcCC-CCCCEEeCCCCCCcccCcccc
Q psy3329         285 LESLEHLDMGYSNLQRISR----STFLKMTS-LKTLILSGNKLETLES----GLFQNL-THLSVLELNNCGLTRLNETVF  354 (694)
Q Consensus       285 l~~L~~L~L~~n~l~~~~~----~~~~~l~~-L~~L~L~~n~l~~~~~----~~l~~l-~~L~~L~L~~n~l~~~~~~~~  354 (694)
                      ..++++|.+.+|.++....    ..+...+. +..|++..|.+.+...    ..+..+ ..++.++++.|.|+.-.....
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            4566666666666552221    22333444 5557777776654321    223333 456777777777765322211


Q ss_pred             c-cCCCCCCCCeeeCCCCCCcC
Q psy3329         355 H-ENYTYPDLEELRLSGNPLHV  375 (694)
Q Consensus       355 ~-~~~~~~~L~~L~Ls~n~l~~  375 (694)
                      . ....++.++.+.++.|++..
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhhhHHHHHhhcccCcccc
Confidence            1 11145677777777777653

>PRK09188 serine/threonine protein kinase; Provisional

Probab=91.52  E-value=0.03  Score=57.44  Aligned_cols=29  Identities=10%  Similarity=0.037  Sum_probs=24.1

Q ss_pred             ccceeecccceeeehhhh--hhhhHHHHHHH
Q psy3329         640 KSFLTLGNFGLISVGVII--LSAMVYFSFYA  668 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~--~g~~vaV~~~~  668 (694)
                      ...||+|+||.||+|...  +|++||||...
T Consensus        23 ~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~   53 (365)
T PRK09188         23 TAVLKRDVFSTVERGYFAGDPGTARAVRRRV   53 (365)
T ss_pred             ccEEeecCcEEEEEEEEcCCCCeEEEEEEec
Confidence            468999999999999875  57888998743

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.48  E-value=0.12  Score=26.55  Aligned_cols=16  Identities=25%  Similarity=0.449  Sum_probs=6.2

Q ss_pred             CceEEECcCCCCcchh
Q psy3329          18 GLITINLNANPIQPVE   33 (694)
Q Consensus        18 ~L~~L~Ls~~~l~~i~   33 (694)
                      +|+.|++++|.++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555554443

...

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=91.39  E-value=0.029  Score=55.52  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhhh----hhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVII----LSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~----~g~~vaV~~~~~~~~  672 (694)
                      ++||+|+||.||+|++.    .+..||+|+......
T Consensus        11 ~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~   46 (266)
T cd05064          11 RILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS   46 (266)
T ss_pred             eeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC
Confidence            67999999999999864    345899988765533

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.36  E-value=0.19  Score=29.10  Aligned_cols=21  Identities=43%  Similarity=0.691  Sum_probs=11.5

Q ss_pred             CCCcEEECCCCcccccChhhh
Q psy3329         494 LELESLDLSNNNLTHISPTVL  514 (694)
Q Consensus       494 ~~L~~L~ls~N~l~~~~~~~~  514 (694)
                      ++|+.|+|++|+|+.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            355556666666555555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.36  E-value=0.19  Score=29.10  Aligned_cols=21  Identities=43%  Similarity=0.691  Sum_probs=11.5

Q ss_pred             CCCcEEECCCCcccccChhhh
Q psy3329         494 LELESLDLSNNNLTHISPTVL  514 (694)
Q Consensus       494 ~~L~~L~ls~N~l~~~~~~~~  514 (694)
                      ++|+.|+|++|+|+.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            355556666666555555444

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=91.24  E-value=0.032  Score=58.42  Aligned_cols=31  Identities=16%  Similarity=0.137  Sum_probs=24.3

Q ss_pred             ccceeecccceeeehhh------hhhhhHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVI------ILSAMVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l------~~g~~vaV~~~~~~  670 (694)
                      ...||+|+||.||+|+.      ..+..||||+....
T Consensus        40 ~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~   76 (375)
T cd05104          40 GKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPS   76 (375)
T ss_pred             hheecCCccceEEEEEEeccccCccceeEEEEeccCC
Confidence            37899999999999863      33458999987643

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG2052|consensus

Probab=91.24  E-value=0.034  Score=56.29  Aligned_cols=29  Identities=17%  Similarity=0.267  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|.||.|.+|.+. |.-||||+++.+
T Consensus       217 e~IGkGRyGEVwrG~wr-Ge~VAVKiF~sr  245 (513)
T KOG2052|consen  217 EIIGKGRFGEVWRGRWR-GEDVAVKIFSSR  245 (513)
T ss_pred             EEecCccccceeecccc-CCceEEEEeccc
Confidence            68999999999999995 557999998754

>KOG4308|consensus

Probab=90.83  E-value=0.0069  Score=64.38  Aligned_cols=183  Identities=23%  Similarity=0.227  Sum_probs=115.2

Q ss_pred             ceEEECcCCCCcch-----hhhhhcCCCCcEEEccCCcCCccChhh----ccCC-CCCCeEECCCCCCCccC----CCCC
Q psy3329          19 LITINLNANPIQPV-----EGAFLVARSLLYLYMQECTLSKINPQF----FTNL-TTLNKLDLSGNPLRIIE----PGVF   84 (694)
Q Consensus        19 L~~L~Ls~~~l~~i-----~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~~~~~~----~~~~   84 (694)
                      +..++|.+|.+..-     ...+...+.|..|++++|.+....-..    +... ..|++|++..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            77788888877742     256667788888888888776422111    2222 55677777777766422    2234


Q ss_pred             CCCCCCCEEeCCCCcCCc----cChhhhc----CCCCCCEEECCCCcCCccc--hhhhhhcCCCC-CCEEEccCCCCCCC
Q psy3329          85 DPLTSLEYLMLNRCNLTY----ISPSAFD----NLNHLKTLELSQNKLKSHI--DWTLVLGNLGK-LDTLDLRQSGISNL  153 (694)
Q Consensus        85 ~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~-L~~L~L~~n~i~~~  153 (694)
                      .....++.++++.|.+..    ..+.++.    ...+++.|++.+|.++...  .+...+...++ +..|++..|.+...
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            557788888888887642    1223333    4667888888888776422  23334555565 67788888887644


Q ss_pred             Cc----cccCCC-CCCcEEeCCCCCCCCcchhh--hcccCCCcccEEeCCCCCCC
Q psy3329         154 PD----NVFANN-TWLRNLNLAENELIDLDVAT--TLGQNLVHLDSLDLSNCHLK  201 (694)
Q Consensus       154 ~~----~~~~~~-~~L~~L~l~~n~l~~~~~~~--~~~~~~~~L~~L~l~~n~~~  201 (694)
                      ..    ..+..+ ..++.+++..|.+++.....  .....+..++.+.++.|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            21    223444 56788888888887644322  11125668888999888874

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=90.74  E-value=0.044  Score=55.85  Aligned_cols=31  Identities=23%  Similarity=0.230  Sum_probs=23.9

Q ss_pred             ccceeecccceeeehhhh-hhhh----HHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVII-LSAM----VYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~-~g~~----vaV~~~~~~  670 (694)
                      .+.||+|+||.||+|+.. +|..    ||||+....
T Consensus        12 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~   47 (316)
T cd05108          12 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA   47 (316)
T ss_pred             eeeeecCCCceEEEEEEecCCCccceeEEEEecccc
Confidence            378999999999999864 4443    888887543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=90.50  E-value=0.045  Score=56.55  Aligned_cols=29  Identities=17%  Similarity=0.134  Sum_probs=24.0

Q ss_pred             cceeecccceeeehh------hhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGV------IILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~------l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+      ..++..||||+...
T Consensus        13 ~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~   47 (343)
T cd05103          13 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKE   47 (343)
T ss_pred             ccccCCccceEEEEeeccCCccccceeEEEEEecc
Confidence            579999999999996      45677999998754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG4250|consensus

Probab=90.23  E-value=0.1  Score=56.19  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=29.4

Q ss_pred             ccceeecccceeeehh-hhhhhhHHHHHHHhhHh
Q psy3329         640 KSFLTLGNFGLISVGV-IILSAMVYFSFYARHLY  672 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~~  672 (694)
                      +..||+||||.||+|+ =+-|..||||.+...++
T Consensus        18 ~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~   51 (732)
T KOG4250|consen   18 DERLGKGAFGNVYRGRNKETGRLVAVKTFNKESS   51 (732)
T ss_pred             hhhhcCCccceeeeecccccccchhHHhhhhhcc
Confidence            3789999999999999 88999999999987553

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=89.99  E-value=0.067  Score=55.09  Aligned_cols=29  Identities=17%  Similarity=0.138  Sum_probs=23.4

Q ss_pred             cceeecccceeeehhhhh------hhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIIL------SAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~------g~~vaV~~~~~  669 (694)
                      ++||.|+||.||+|+..+      |..||||+...
T Consensus        13 ~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~   47 (337)
T cd05054          13 KPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKE   47 (337)
T ss_pred             cccccCcCceEEeccccccccccccceeeeeeccC
Confidence            689999999999997533      35899998753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=89.99  E-value=0.048  Score=53.91  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=26.3

Q ss_pred             cccceeecccceeeehhhhhh----hhHHHHHHHhhHhH
Q psy3329         639 SKSFLTLGNFGLISVGVIILS----AMVYFSFYARHLYR  673 (694)
Q Consensus       639 ~~~~iG~G~fG~VYkg~l~~g----~~vaV~~~~~~~~~  673 (694)
                      -.+.||+|+||.||+|++...    ..||||+.......
T Consensus         8 ~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~   46 (266)
T cd05033           8 IEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSD   46 (266)
T ss_pred             eeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCCh
Confidence            347899999999999998643    47888877544333

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=89.96  E-value=0.05  Score=51.09  Aligned_cols=27  Identities=11%  Similarity=0.032  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFY  667 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~  667 (694)
                      +.||.|+||.||+|...+|+.||||+.
T Consensus        21 ~~i~~G~~g~Vy~~~~~~g~~vavK~~   47 (198)
T cd05144          21 NQIGVGKESDVYLALDPDGNPVALKFH   47 (198)
T ss_pred             CccccCcceEEEEEEcCCCCEEEEEEE
Confidence            789999999999999999999999974

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=89.79  E-value=0.05  Score=54.24  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=26.6

Q ss_pred             cceeecccceeeehh-hhhhhh----HHHHHHHhhHhHhhhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAM----VYFSFYARHLYRTKQQ  677 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~----vaV~~~~~~~~~~~~~  677 (694)
                      +.||.|+||+||+|+ .++|..    ||||+..........+
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~   54 (279)
T cd05109          13 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANK   54 (279)
T ss_pred             eecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHH
Confidence            689999999999998 456653    7888876544433333

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=89.60  E-value=0.047  Score=56.66  Aligned_cols=30  Identities=7%  Similarity=-0.043  Sum_probs=25.3

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+.. +|..||||+....
T Consensus        80 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~  110 (353)
T PLN00034         80 NRIGSGAGGTVYKVIHRPTGRLYALKVIYGN  110 (353)
T ss_pred             hhccCCCCeEEEEEEECCCCCEEEEEEEecC
Confidence            68999999999999864 6789999987543

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=89.54  E-value=0.062  Score=56.23  Aligned_cols=31  Identities=16%  Similarity=0.059  Sum_probs=24.1

Q ss_pred             cceeecccceeeehh------hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV------IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~------l~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|+      ..++..||||+.....
T Consensus        44 ~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~   80 (374)
T cd05106          44 KTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASA   80 (374)
T ss_pred             heecCCCcccEEEEEEecCCcccccceeEEEeccCCC
Confidence            689999999999876      3344589999886543

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=89.47  E-value=0.06  Score=57.20  Aligned_cols=33  Identities=6%  Similarity=-0.026  Sum_probs=28.5

Q ss_pred             CcccceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         638 NSKSFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       638 ~~~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      .+.+.||.|++|.||+|++.+|+.||||+....
T Consensus       120 fd~~plasaSigQVh~A~l~~G~~VaVKv~rp~  152 (437)
T TIGR01982       120 FEEKPLAAASIAQVHRARLVDGKEVAVKVLRPG  152 (437)
T ss_pred             CCCcceeeeehhheEEEEecCCCEEEEEeeCCC
Confidence            345789999999999999999999999997443

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0597|consensus

Probab=89.43  E-value=0.056  Score=56.49  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=28.0

Q ss_pred             cceeecccceeeehhhhhhh-hHHHHHHHhhHhHh
Q psy3329         641 SFLTLGNFGLISVGVIILSA-MVYFSFYARHLYRT  674 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~-~vaV~~~~~~~~~~  674 (694)
                      +.||+|+||.||||+=.+-. +||+|+-...++-.
T Consensus         8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~   42 (808)
T KOG0597|consen    8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNE   42 (808)
T ss_pred             HHhcCCccceeeecccccceeEEEEEEehhcCCch
Confidence            36999999999999986654 99998887777666

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=89.35  E-value=0.062  Score=53.55  Aligned_cols=33  Identities=18%  Similarity=0.140  Sum_probs=26.8

Q ss_pred             cceeecccceeeehhhhhh------hhHHHHHHHhhHhH
Q psy3329         641 SFLTLGNFGLISVGVIILS------AMVYFSFYARHLYR  673 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g------~~vaV~~~~~~~~~  673 (694)
                      +.||+|+||.||+|+..++      ..||||........
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~   49 (280)
T cd05049          11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASN   49 (280)
T ss_pred             hhccccCCceEeeeeeccccCcCCcceEEEEeecccCCH
Confidence            6799999999999998654      68999988765444

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=89.32  E-value=0.058  Score=54.63  Aligned_cols=31  Identities=16%  Similarity=0.230  Sum_probs=23.5

Q ss_pred             cceeecccceeeehhhhhh-----------------hhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIILS-----------------AMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g-----------------~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+++..++                 ..||||+.....
T Consensus        11 ~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~   58 (304)
T cd05096          11 EKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDA   58 (304)
T ss_pred             eEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCC
Confidence            5799999999999986432                 368888765543

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG1026|consensus

Probab=89.28  E-value=0.11  Score=57.24  Aligned_cols=42  Identities=19%  Similarity=0.150  Sum_probs=35.1

Q ss_pred             cceeecccceeeehhhhhhh------hHHHHHHHhhHhHhhhhhhhcc
Q psy3329         641 SFLTLGNFGLISVGVIILSA------MVYFSFYARHLYRTKQQRIRRN  682 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~------~vaV~~~~~~~~~~~~~~~~~~  682 (694)
                      +-||+|.||.||+|......      .||||.+...--...|++-+||
T Consensus       492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~RE  539 (774)
T KOG1026|consen  492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRRE  539 (774)
T ss_pred             hhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHH
Confidence            78999999999999986553      8999999988877777766655

>KOG0192|consensus

Probab=89.19  E-value=0.043  Score=56.33  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             ccceeecccceeeehhhhhhhhHHHHHHHhhH
Q psy3329         640 KSFLTLGNFGLISVGVIILSAMVYFSFYARHL  671 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~  671 (694)
                      ...||.|+||+||+|++..-.+||||.+...-
T Consensus        46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~   77 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPD   77 (362)
T ss_pred             hhhcccCCceeEEEEEeCCceeEEEEEecchh
Confidence            35599999999999999444459999887654

>KOG3864|consensus

Probab=89.05  E-value=0.082  Score=47.93  Aligned_cols=82  Identities=23%  Similarity=0.225  Sum_probs=40.7

Q ss_pred             CCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEE
Q psy3329         140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY  219 (694)
Q Consensus       140 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  219 (694)
                      ++.++-++..|....-..+.+++.++.|.+.++.-.+......++...++|+.|++++|.-..+-....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            45555566555554444555666666666666554443344444444555566665555421222222333444444444


Q ss_pred             cC
Q psy3329         220 LS  221 (694)
Q Consensus       220 L~  221 (694)
                      +.
T Consensus       183 l~  184 (221)
T KOG3864|consen  183 LY  184 (221)
T ss_pred             hc
Confidence            43

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=88.67  E-value=0.069  Score=56.33  Aligned_cols=30  Identities=20%  Similarity=0.208  Sum_probs=23.1

Q ss_pred             cceeecccceeeehhhhh------hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL------SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~------g~~vaV~~~~~~  670 (694)
                      ++||+|+||.||+|+...      +..||||+....
T Consensus        43 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~   78 (400)
T cd05105          43 RILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPT   78 (400)
T ss_pred             heecCCCCceEEEEEEcccCCCCCceEEEEEecCCC
Confidence            679999999999998521      236899988643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=88.55  E-value=0.09  Score=52.04  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=26.8

Q ss_pred             cccceeecccceeeehhhh-hhhhHHHHHHHhhHhH
Q psy3329         639 SKSFLTLGNFGLISVGVII-LSAMVYFSFYARHLYR  673 (694)
Q Consensus       639 ~~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~  673 (694)
                      ....||+|+||.||+|+.. ++..||||.......+
T Consensus        12 ~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~   47 (268)
T cd06624          12 ERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSR   47 (268)
T ss_pred             ceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHH
Confidence            3479999999999999854 5668999876654433

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=88.35  E-value=0.066  Score=58.27  Aligned_cols=30  Identities=10%  Similarity=0.010  Sum_probs=25.4

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+ ..+|..||||+....
T Consensus        38 ~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~   68 (496)
T PTZ00283         38 RVLGSGATGTVLCAKRVSDGEPFAVKVVDME   68 (496)
T ss_pred             EEEecCCCEEEEEEEEcCCCCEEEEEEEecc
Confidence            689999999999997 457889999987543

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=88.34  E-value=0.069  Score=52.57  Aligned_cols=30  Identities=20%  Similarity=0.155  Sum_probs=26.5

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||.|+||.||+|...+|..||||.....
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~   41 (260)
T cd05067          12 KKLGAGQFGEVWMGYYNGHTKVAIKSLKQG   41 (260)
T ss_pred             eeeccCccceEEeeecCCCceEEEEEecCC
Confidence            579999999999999999999999976543

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG3864|consensus

Probab=88.10  E-value=0.13  Score=46.73  Aligned_cols=84  Identities=20%  Similarity=0.197  Sum_probs=54.6

Q ss_pred             CCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC-CCCCCccccCCCCCCcE
Q psy3329          88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG-ISNLPDNVFANNTWLRN  166 (694)
Q Consensus        88 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~  166 (694)
                      ..++.+|-++..|....-+.+..++.++.|.+.+|.--+...+...-+-.++|+.|++++|. |++-.-..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            45778888888888777777888888888888887544322222222345778888888664 55444445556666666


Q ss_pred             EeCCC
Q psy3329         167 LNLAE  171 (694)
Q Consensus       167 L~l~~  171 (694)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            65543

>KOG0575|consensus

Probab=88.10  E-value=0.087  Score=55.66  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=30.1

Q ss_pred             ccceeecccceeeehhh-hhhhhHHHHHHHhhHhHhh
Q psy3329         640 KSFLTLGNFGLISVGVI-ILSAMVYFSFYARHLYRTK  675 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~~~~  675 (694)
                      -++||+|||..||.++- +.|.+|||||=.+..-+..
T Consensus        23 g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~   59 (592)
T KOG0575|consen   23 GRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKP   59 (592)
T ss_pred             eeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCc
Confidence            37999999999999998 8999999999776544433

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=87.96  E-value=0.087  Score=52.48  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||.|+||.||+|+. .+|.+||||+....
T Consensus        10 ~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~   40 (277)
T cd06641          10 EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLE   40 (277)
T ss_pred             eeEeecCCeEEEEEEECCCCcEEEEEEeccc
Confidence            5799999999999975 46789999986543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG0658|consensus

Probab=87.94  E-value=0.1  Score=51.63  Aligned_cols=28  Identities=14%  Similarity=0.269  Sum_probs=23.1

Q ss_pred             Ccccceeecccceeeehhhhhh-hhHHHH
Q psy3329         638 NSKSFLTLGNFGLISVGVIILS-AMVYFS  665 (694)
Q Consensus       638 ~~~~~iG~G~fG~VYkg~l~~g-~~vaV~  665 (694)
                      ...+++|.|+||.||+|++..- ..||||
T Consensus        27 ~~~~liG~GsFg~Vyq~~~~e~~~~vAIK   55 (364)
T KOG0658|consen   27 EAVRLIGSGSFGVVYQAKLRETEEEVAIK   55 (364)
T ss_pred             EeeEEEeecccceEEEEEEcCCCceeEEE
Confidence            4458999999999999999654 488885

>KOG0580|consensus

Probab=87.90  E-value=0.11  Score=48.41  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             cceeecccceeeehhhhhhh-hHHHHHHHhhHhHh--hhhhhhcc
Q psy3329         641 SFLTLGNFGLISVGVIILSA-MVYFSFYARHLYRT--KQQRIRRN  682 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~-~vaV~~~~~~~~~~--~~~~~~~~  682 (694)
                      ..+|+|.||.||.|.-.-.- +||+||.-...-+.  .+++++||
T Consensus        28 r~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrRE   72 (281)
T KOG0580|consen   28 RPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRRE   72 (281)
T ss_pred             ccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhhe
Confidence            78999999999999986554 99999876655443  34456655

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=87.89  E-value=0.085  Score=52.73  Aligned_cols=31  Identities=19%  Similarity=0.063  Sum_probs=24.6

Q ss_pred             cceeecccceeeehhh-----hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-----ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-----~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+.     .++..||||......
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~   46 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDIN   46 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCC
Confidence            6799999999999984     456788888876433

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=87.74  E-value=0.078  Score=52.88  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=25.7

Q ss_pred             ccceeecccceeeehhhhh-----hhhHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVIIL-----SAMVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~-----g~~vaV~~~~~~  670 (694)
                      .++||+|+||.||+|...+     +..||+|.....
T Consensus        11 ~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~   46 (280)
T cd05043          11 SDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDH   46 (280)
T ss_pred             eeeecccCCceEEEEEEecCCCCceeEEEEEEccCC
Confidence            3689999999999999987     678888876543

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>KOG0473|consensus

Probab=87.56  E-value=0.021  Score=52.61  Aligned_cols=87  Identities=8%  Similarity=0.007  Sum_probs=74.6

Q ss_pred             CCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEE
Q psy3329          14 LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL   93 (694)
Q Consensus        14 ~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L   93 (694)
                      .-++..+.||++.|.+..+-..|+.+..+..|+++.|.+... |..+.....++.+++..|..+..|. +++..++++++
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~  116 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKN  116 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCc-cccccCCcchh
Confidence            345678999999999998888889999999999999988776 6778899999999999999887754 49999999999


Q ss_pred             eCCCCcCCc
Q psy3329          94 MLNRCNLTY  102 (694)
Q Consensus        94 ~L~~n~l~~  102 (694)
                      ++-.+.+..
T Consensus       117 e~k~~~~~~  125 (326)
T KOG0473|consen  117 EQKKTEFFR  125 (326)
T ss_pred             hhccCcchH
Confidence            998887543

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=87.50  E-value=0.075  Score=53.10  Aligned_cols=32  Identities=16%  Similarity=0.091  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhhh------hhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVIIL------SAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~------g~~vaV~~~~~~~~  672 (694)
                      +.||.|+||.||+|+..+      +..||||+......
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~   48 (283)
T cd05091          11 EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE   48 (283)
T ss_pred             HHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC
Confidence            578999999999998754      45899999875443

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=87.45  E-value=0.076  Score=53.27  Aligned_cols=30  Identities=13%  Similarity=0.066  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      +.||.|+||.||+|+-. +|..||||+....
T Consensus        11 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~   41 (288)
T cd07871          11 DKLGEGTYATVFKGRSKLTENLVALKEIRLE   41 (288)
T ss_pred             eEEecCCCEEEEEEEECCCCCEEEEEEeccc
Confidence            68999999999999765 5678999977543

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=87.36  E-value=0.08  Score=53.57  Aligned_cols=31  Identities=13%  Similarity=0.082  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||.|+||.||+|+-. +|..||||+.....
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~   42 (303)
T cd07869          11 EKLGEGSYATVYKGKSKVNGKLVALKVIRLQE   42 (303)
T ss_pred             eeEEecCCEEEEEEEECCCCCEEEEEEecccc
Confidence            67999999999999976 67899999876443

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>PHA02882 putative serine/threonine kinase; Provisional

Probab=87.05  E-value=0.1  Score=52.54  Aligned_cols=26  Identities=12%  Similarity=0.144  Sum_probs=20.8

Q ss_pred             cceeecccceeeehhhhhh----hhHHHHH
Q psy3329         641 SFLTLGNFGLISVGVIILS----AMVYFSF  666 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g----~~vaV~~  666 (694)
                      ++||+|+||.||+|+..++    .++|+|+
T Consensus        18 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~   47 (294)
T PHA02882         18 KLIGCGGFGCVYETQCASDHCINNQAVAKI   47 (294)
T ss_pred             eEEecCCCceEEEEEEcCCcccccceEEEe
Confidence            6899999999999998665    3566664

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=86.91  E-value=0.096  Score=55.26  Aligned_cols=31  Identities=16%  Similarity=0.106  Sum_probs=24.9

Q ss_pred             cceeecccceeeehhhhh------hhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL------SAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~------g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+..+      +..||||+.....
T Consensus        43 ~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~   79 (401)
T cd05107          43 RTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTA   79 (401)
T ss_pred             hhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCC
Confidence            689999999999998643      3479999886543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0595|consensus

Probab=86.59  E-value=0.15  Score=51.34  Aligned_cols=29  Identities=21%  Similarity=0.224  Sum_probs=24.6

Q ss_pred             eeecccceeeehhhhhh-hhHHHHHHHhhH
Q psy3329         643 LTLGNFGLISVGVIILS-AMVYFSFYARHL  671 (694)
Q Consensus       643 iG~G~fG~VYkg~l~~g-~~vaV~~~~~~~  671 (694)
                      ||+|.||+||||+..+- ++||||--....
T Consensus        18 iG~GsfavVykg~h~~~~~~VAIK~i~~~~   47 (429)
T KOG0595|consen   18 IGSGSFAVVYKGRHKKSGTEVAIKCIAKKK   47 (429)
T ss_pred             ccCcceEEEEEeEeccCCceEEeeeehhhc
Confidence            99999999999998654 599998776664

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=86.53  E-value=0.12  Score=52.98  Aligned_cols=29  Identities=14%  Similarity=0.256  Sum_probs=24.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+++.. +|..||||+...
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~   36 (331)
T cd05597           7 KVIGRGAFGEVAVVKMKNTGQVYAMKILNK   36 (331)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence            57999999999999965 477999998754

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>PTZ00284 protein kinase; Provisional

Probab=86.36  E-value=0.13  Score=55.75  Aligned_cols=28  Identities=18%  Similarity=0.119  Sum_probs=23.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+.. .|..||||+..
T Consensus       135 ~~lG~G~fg~V~~a~~~~~~~~vAvK~i~  163 (467)
T PTZ00284        135 SLLGEGTFGKVVEAWDRKRKEYCAVKIVR  163 (467)
T ss_pred             EEEEeccCEEEEEEEEcCCCeEEEEEEEe
Confidence            68999999999999864 46689999864

>KOG1027|consensus

Probab=86.13  E-value=0.33  Score=53.49  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=37.1

Q ss_pred             Ccccceeecccce-eeehhhhhhhhHHHHHHHhhHhHhhhhhhh
Q psy3329         638 NSKSFLTLGNFGL-ISVGVIILSAMVYFSFYARHLYRTKQQRIR  680 (694)
Q Consensus       638 ~~~~~iG~G~fG~-VYkg~l~~g~~vaV~~~~~~~~~~~~~~~~  680 (694)
                      +.+.++|.|.-|+ ||+|+. +|+.||||......+...|.+|+
T Consensus       512 ~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e~~~~A~rEi~  554 (903)
T KOG1027|consen  512 SPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEEFFDFAQREIQ  554 (903)
T ss_pred             ccHHHcccCCCCcEEEEEee-CCceehHHHHhhHhHHHHHHHHH
Confidence            5668999999987 899999 67799999999999988888865

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=86.03  E-value=0.15  Score=52.43  Aligned_cols=29  Identities=14%  Similarity=0.259  Sum_probs=24.1

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+++.. .|..||||+...
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~   36 (331)
T cd05624           7 KVIGRGAFGEVAVVKMKHTERIYAMKILNK   36 (331)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeH
Confidence            57999999999999875 456899998754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=85.81  E-value=0.15  Score=56.29  Aligned_cols=29  Identities=14%  Similarity=0.159  Sum_probs=24.5

Q ss_pred             ccceeecccceeeehhhhh-----hhhHHHHHHH
Q psy3329         640 KSFLTLGNFGLISVGVIIL-----SAMVYFSFYA  668 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~-----g~~vaV~~~~  668 (694)
                      .+.||+|+||.||+|+..+     |..||||...
T Consensus       137 ~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~  170 (566)
T PLN03225        137 GKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKAT  170 (566)
T ss_pred             eEEEeeCCCeEEEEEEEcCCccccCcEEEEEEec
Confidence            3799999999999999876     4688998654

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=85.77  E-value=0.16  Score=52.25  Aligned_cols=32  Identities=13%  Similarity=0.176  Sum_probs=26.6

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~~  672 (694)
                      ..||.|+||.||+|+..+ |..||||+......
T Consensus         7 ~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~   39 (333)
T cd05600           7 TQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLL   39 (333)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEEEHHHH
Confidence            479999999999999864 77999998876543

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>smart00090 RIO RIO-like kinase

Probab=85.70  E-value=0.14  Score=49.57  Aligned_cols=29  Identities=7%  Similarity=-0.035  Sum_probs=25.9

Q ss_pred             cceeecccceeeehh--hhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGV--IILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~--l~~g~~vaV~~~~~  669 (694)
                      ..||.|+||.||+|+  ..+|..||||+...
T Consensus        34 ~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~   64 (237)
T smart00090       34 GCISTGKEANVYHALDFDGSGKERAVKIYRT   64 (237)
T ss_pred             CeeccCcceeEEEEEecCCCCcEEEEEEEEc
Confidence            579999999999998  78999999998754

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=85.49  E-value=0.16  Score=52.96  Aligned_cols=30  Identities=10%  Similarity=0.117  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      +.||.|+||.||+|+-. .|..||||+....
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~   37 (364)
T cd05599           7 KVIGRGAFGEVRLVQKKDTGHIYAMKKLRKS   37 (364)
T ss_pred             EEEEecCCEEEEEEEECCCCCEEEEEEEEHH
Confidence            57999999999999875 5789999988654

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=85.14  E-value=0.16  Score=49.94  Aligned_cols=32  Identities=19%  Similarity=0.106  Sum_probs=27.9

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~  672 (694)
                      +.||.|+||.||+|+..++..||+|+......
T Consensus        12 ~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~   43 (261)
T cd05148          12 RKLGSGYFGEVWEGLWKNRVRVAIKILKSDDL   43 (261)
T ss_pred             hhhccCCCccEEEeEecCCCcEEEEeccccch
Confidence            67999999999999999999999998765543

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=85.03  E-value=0.13  Score=51.26  Aligned_cols=32  Identities=13%  Similarity=0.119  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~  672 (694)
                      .+||.|+||.||+|+- .+|..||||+......
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~   39 (279)
T cd06619           7 EILGHGNGGTVYKAYHLLTRRILAVKVIPLDIT   39 (279)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEEecCCC
Confidence            4799999999999975 4667999998765433

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=84.84  E-value=0.12  Score=52.50  Aligned_cols=30  Identities=13%  Similarity=0.062  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+-. .+..||||+....
T Consensus        12 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~   42 (309)
T cd07872          12 EKLGEGTYATVFKGRSKLTENLVALKEIRLE   42 (309)
T ss_pred             EEecccCCEEEEEEEecCCCCeEEEEEeecc
Confidence            67999999999999865 5568999977544

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=84.82  E-value=0.16  Score=50.05  Aligned_cols=29  Identities=24%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|...++..||||....
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~v~iK~~~~   40 (261)
T cd05072          12 KKLGAGQFGEVWMGYYNNSTKVAVKTLKP   40 (261)
T ss_pred             eecCCcCCceEEEEEecCCceEEEEEccC
Confidence            57999999999999999888999987654

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=84.66  E-value=0.17  Score=50.07  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=25.1

Q ss_pred             ccceeecccceeeehhhhhh----hhHHHHHHHhhH
Q psy3329         640 KSFLTLGNFGLISVGVIILS----AMVYFSFYARHL  671 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g----~~vaV~~~~~~~  671 (694)
                      .+.||.|+||.||+|+..+.    ..||||......
T Consensus        11 ~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~   46 (270)
T cd05056          11 GRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCT   46 (270)
T ss_pred             eeeeCCccceeEEEEEEecCCCCCcceEEEecCCcC
Confidence            36899999999999997664    368888776544

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=84.45  E-value=0.17  Score=50.51  Aligned_cols=32  Identities=16%  Similarity=0.036  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhhh-----hhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVII-----LSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-----~g~~vaV~~~~~~~~  672 (694)
                      +.||+|+||.||+|++.     .|..||||+......
T Consensus        10 ~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~   46 (284)
T cd05038          10 KQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGE   46 (284)
T ss_pred             eeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccc
Confidence            67999999999999975     356899998765433

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=84.41  E-value=0.2  Score=49.26  Aligned_cols=29  Identities=17%  Similarity=0.112  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|...++..||||....
T Consensus        12 ~~lg~g~~~~vy~~~~~~~~~~~iK~~~~   40 (260)
T cd05073          12 KKLGAGQFGEVWMATYNKHTKVAVKTMKP   40 (260)
T ss_pred             eEecCccceEEEEEEecCCccEEEEecCC
Confidence            67999999999999988888899987654

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0591|consensus

Probab=84.26  E-value=0.31  Score=46.59  Aligned_cols=26  Identities=15%  Similarity=0.178  Sum_probs=22.2

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSF  666 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~  666 (694)
                      ..||+|.||.|||+. +.+|..||.|-
T Consensus        25 ~~IG~GsFg~vykv~~~~~g~l~a~K~   51 (375)
T KOG0591|consen   25 KKIGRGSFGEVYKVQCLLDGKLVALKK   51 (375)
T ss_pred             HHHcCCcchheEEeeeccCcchhhhhh
Confidence            679999999999985 78898888763

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=84.18  E-value=0.21  Score=52.52  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=23.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+. ..|..||||+....
T Consensus         7 ~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~   37 (381)
T cd05626           7 KTLGIGAFGEVCLACKVDTHALYAMKTLRKK   37 (381)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHH
Confidence            4699999999999975 44568999987543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG4257|consensus

Probab=84.07  E-value=0.21  Score=53.04  Aligned_cols=32  Identities=22%  Similarity=0.223  Sum_probs=27.6

Q ss_pred             Ccccceeecccceeeehhhhhhh-----hHHHHHHHh
Q psy3329         638 NSKSFLTLGNFGLISVGVIILSA-----MVYFSFYAR  669 (694)
Q Consensus       638 ~~~~~iG~G~fG~VYkg~l~~g~-----~vaV~~~~~  669 (694)
                      +-+.+||.|-||.||+|++.+-.     .||||.+..
T Consensus       392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~  428 (974)
T KOG4257|consen  392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKT  428 (974)
T ss_pred             cHHHhhcCCcccceeeeEecccccCcceeeeeehhcc
Confidence            56689999999999999997762     799998875

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=83.91  E-value=0.22  Score=50.04  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhhhhh-------------h--hHHHHHHHhhHhHh
Q psy3329         641 SFLTLGNFGLISVGVIILS-------------A--MVYFSFYARHLYRT  674 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g-------------~--~vaV~~~~~~~~~~  674 (694)
                      +.||+|+||.||+++....             +  .||||+......+.
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~   59 (295)
T cd05097          11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKT   59 (295)
T ss_pred             hccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHH
Confidence            5699999999999887542             2  47888776543333

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=83.53  E-value=0.15  Score=50.84  Aligned_cols=30  Identities=10%  Similarity=0.119  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. +|..||+|.....
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~   37 (283)
T cd06617           7 EELGRGAYGVVDKMRHVPTGTIMAVKRIRAT   37 (283)
T ss_pred             EEecccCCeEEEEEEEcCCCcEEEEEEEecC
Confidence            46899999999999875 5889999866443

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=83.51  E-value=0.18  Score=50.48  Aligned_cols=28  Identities=21%  Similarity=0.174  Sum_probs=22.4

Q ss_pred             cceeecccceeeehhhhh------hhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVIIL------SAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~------g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+..+      +..||||...
T Consensus        12 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~   45 (288)
T cd05061          12 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVN   45 (288)
T ss_pred             eeecCCCCcEEEEEEEeccCCCCcceEEEEEECC
Confidence            679999999999997543      4478998754

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=83.36  E-value=0.18  Score=49.70  Aligned_cols=29  Identities=21%  Similarity=0.147  Sum_probs=25.7

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|...++..||||....
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~v~iK~~~~   40 (261)
T cd05068          12 RKLGAGQFGEVWEGLWNNTTPVAVKTLKP   40 (261)
T ss_pred             EEecccCCccEEEEEecCCeEEEEEeeCC
Confidence            68999999999999988888899998754

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=83.34  E-value=0.19  Score=49.78  Aligned_cols=31  Identities=19%  Similarity=0.325  Sum_probs=24.6

Q ss_pred             ccceeecccceeeehhhhhh----hhHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVIILS----AMVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g----~~vaV~~~~~~  670 (694)
                      .+.||+|+||.||+|+....    ..||||+....
T Consensus         9 ~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~   43 (269)
T cd05065           9 EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSG   43 (269)
T ss_pred             EeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCC
Confidence            46799999999999998643    25899987654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=83.26  E-value=0.17  Score=52.21  Aligned_cols=30  Identities=17%  Similarity=0.142  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||.|+||.||+|+- .+|..||||.....
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   51 (343)
T cd07878          21 TPVGSGAYGSVCSAYDTRLRQKVAVKKLSRP   51 (343)
T ss_pred             eecccCCCeEEEEEEECCCCCEEEEEEeCch
Confidence            5799999999999985 45668999987643

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=83.07  E-value=0.23  Score=50.90  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+-. +|..||||+......
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~   39 (330)
T cd05601           7 SLVGRGHFGEVQVVREKATGDIYAMKVMKKSVL   39 (330)
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEEHHHh
Confidence            57999999999998864 677999998776543

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=83.04  E-value=0.25  Score=51.87  Aligned_cols=30  Identities=17%  Similarity=0.237  Sum_probs=24.2

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+- .+|..||||+....
T Consensus         7 ~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~   37 (382)
T cd05625           7 KTLGIGAFGEVCLARKVDTKALYAMKTLRKK   37 (382)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEeHH
Confidence            4799999999999986 45668999986543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>PTZ00036 glycogen synthase kinase; Provisional

Probab=82.97  E-value=0.23  Score=53.21  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~  668 (694)
                      +.||+|+||.||+|+.. .|..||||...
T Consensus        72 ~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~  100 (440)
T PTZ00036         72 NIIGNGSFGVVYEAICIDTSEKVAIKKVL  100 (440)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEe
Confidence            68999999999999875 56789998653

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=82.84  E-value=0.23  Score=51.41  Aligned_cols=31  Identities=10%  Similarity=0.046  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~   38 (350)
T cd05573           7 KVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSD   38 (350)
T ss_pred             EEEEeCCcEEEEEEEECCCCCEEEEEEEEHHH
Confidence            47999999999999976 57799999876543

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=82.42  E-value=0.2  Score=49.34  Aligned_cols=29  Identities=10%  Similarity=0.174  Sum_probs=24.9

Q ss_pred             ccceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329         640 KSFLTLGNFGLISVGVII-LSAMVYFSFYA  668 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~  668 (694)
                      .+.||.|+||.||+|+.. +|..||+|...
T Consensus         7 ~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~   36 (267)
T cd08224           7 EKKIGKGQFSVVYKAICLLDGRVVALKKVQ   36 (267)
T ss_pred             eeeeccCCceEEEEEEEcCCCCEEEEEEee
Confidence            357999999999999998 78899998664

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=82.37  E-value=0.27  Score=50.51  Aligned_cols=29  Identities=14%  Similarity=0.259  Sum_probs=23.8

Q ss_pred             cceeecccceeeehhhhhh-hhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILS-AMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g-~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+..+. .+||||+...
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~   36 (332)
T cd05623           7 KVIGRGAFGEVAVVKLKNADKVFAMKILNK   36 (332)
T ss_pred             EEEEeCCCeEEEEEEECCCCCEEEEEEEeH
Confidence            5799999999999998654 4788888754

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=82.32  E-value=0.22  Score=49.00  Aligned_cols=29  Identities=21%  Similarity=0.162  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||.|+||.||+|...++..||||....
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~vK~~~~   40 (261)
T cd05034          12 RKLGAGQFGEVWMGTWNGTTKVAVKTLKP   40 (261)
T ss_pred             eeeccCcceEEEEEEEcCCceEEEEEecC
Confidence            57999999999999998888899987764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=82.05  E-value=0.19  Score=50.00  Aligned_cols=29  Identities=17%  Similarity=0.209  Sum_probs=24.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      +.||.|+||.||+|+.. +|.+||||+...
T Consensus        10 ~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~   39 (277)
T cd06642          10 ERIGKGSFGEVYKGIDNRTKEVVAIKIIDL   39 (277)
T ss_pred             HHhcCCCCeeEEEEEEcCCCeEEEEEEecc
Confidence            56999999999999864 467899998653

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=82.05  E-value=0.23  Score=48.67  Aligned_cols=28  Identities=21%  Similarity=0.250  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+..++..||||...
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~a~K~~~   37 (256)
T cd05114          10 KELGSGQFGVVHLGKWRAQIKVAIKAIN   37 (256)
T ss_pred             eEecCCcCceEEEEEeccCceEEEEecc
Confidence            5699999999999999988889998754

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0661|consensus

Probab=81.98  E-value=0.51  Score=48.63  Aligned_cols=37  Identities=16%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhHhHhhhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHLYRTKQQ  677 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~~~~~~~  677 (694)
                      +.+|.|.||.||+|+ ...|..||||--.+..|-+.+.
T Consensus        16 ~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~   53 (538)
T KOG0661|consen   16 RKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEEC   53 (538)
T ss_pred             HHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHH
Confidence            468999999999997 5677799999988888776554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.96  E-value=0.5  Score=26.68  Aligned_cols=14  Identities=64%  Similarity=0.926  Sum_probs=5.6

Q ss_pred             CCcEEECCCCcccc
Q psy3329         495 ELESLDLSNNNLTH  508 (694)
Q Consensus       495 ~L~~L~ls~N~l~~  508 (694)
                      +|++|+|++|+|+.
T Consensus         3 ~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    3 NLETLDLSNNQITD   16 (24)
T ss_dssp             T-SEEE-TSSBEHH
T ss_pred             CCCEEEccCCcCCH
Confidence            44444444444443

...

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=81.46  E-value=0.25  Score=50.79  Aligned_cols=29  Identities=14%  Similarity=0.245  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      +.||.|+||.||+|+- .+|..||||+.+.
T Consensus        11 ~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~   40 (336)
T cd07849          11 SYIGEGAYGMVCSATHKPTGVKVAIKKISP   40 (336)
T ss_pred             EEEEecCCeEEEEEEEcCCCCeEEEEEecc
Confidence            6899999999999974 5688999997753

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=81.44  E-value=0.25  Score=49.64  Aligned_cols=29  Identities=14%  Similarity=0.057  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|+-. +|..||||+...
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~   36 (291)
T cd05612           7 KTVGTGTFGRVHLVRDRISEHYYALKVMAI   36 (291)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEEEH
Confidence            57999999999999876 577999998754

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=81.36  E-value=0.18  Score=50.33  Aligned_cols=30  Identities=23%  Similarity=0.018  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+.. +|.+||+|+....
T Consensus        11 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~   41 (284)
T cd06620          11 SDLGAGNGGSVSKVKHIPTGTVMAKKVVHIG   41 (284)
T ss_pred             HHcCCCCCeEEEEEEEcCCCcEEEEEEEEec
Confidence            57999999999999865 5778999876543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=81.24  E-value=0.31  Score=50.82  Aligned_cols=30  Identities=10%  Similarity=0.148  Sum_probs=24.8

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. .|..||||+....
T Consensus         7 ~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~   37 (363)
T cd05628           7 KVIGRGAFGEVRLVQKKDTGHVYAMKILRKA   37 (363)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEEHH
Confidence            57999999999999754 4779999987653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG1095|consensus

Probab=81.24  E-value=0.27  Score=56.44  Aligned_cols=39  Identities=18%  Similarity=0.091  Sum_probs=31.3

Q ss_pred             ccceeecccceeeehhhhhhh------hHHHHHHHhhHhHhhhhh
Q psy3329         640 KSFLTLGNFGLISVGVIILSA------MVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g~------~vaV~~~~~~~~~~~~~~  678 (694)
                      ..+||+|.||.||+|.+.+-.      .||||...+....+.++.
T Consensus       697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~  741 (1025)
T KOG1095|consen  697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSD  741 (1025)
T ss_pred             eeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHH
Confidence            389999999999999998765      388888877766666555

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=81.22  E-value=0.24  Score=49.26  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhhhh-hh----hHHHHHHHhhHhHh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SA----MVYFSFYARHLYRT  674 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~----~vaV~~~~~~~~~~  674 (694)
                      +.||.|+||.||+|+..+ |.    .||+|+......+.
T Consensus        13 ~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~   51 (279)
T cd05057          13 KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPK   51 (279)
T ss_pred             ceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHH
Confidence            689999999999999753 43    47888776555433

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=81.18  E-value=0.31  Score=51.09  Aligned_cols=30  Identities=10%  Similarity=0.109  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      +.||.|+||.||+|+- .+|..||||+....
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~   37 (377)
T cd05629           7 KVIGKGAFGEVRLVQKKDTGKIYAMKTLLKS   37 (377)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHH
Confidence            5799999999999875 46779999976543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=81.10  E-value=0.23  Score=49.38  Aligned_cols=36  Identities=17%  Similarity=0.120  Sum_probs=26.8

Q ss_pred             cceeecccceeeehhhhh------hhhHHHHHHHhhHhHhhh
Q psy3329         641 SFLTLGNFGLISVGVIIL------SAMVYFSFYARHLYRTKQ  676 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~------g~~vaV~~~~~~~~~~~~  676 (694)
                      +.||+|+||.||+|+..+      +..||+|..........+
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~   53 (277)
T cd05036          12 RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDE   53 (277)
T ss_pred             eECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHH
Confidence            689999999999999975      347888876544444333

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=80.99  E-value=0.26  Score=50.63  Aligned_cols=30  Identities=17%  Similarity=0.025  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+++-. .|..||+|+....
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~   41 (331)
T cd06649          11 SELGAGNGGVVTKVQHKPSGLIMARKLIHLE   41 (331)
T ss_pred             EeecCCCCEEEEEEEECCCCcEEEEEEeecc
Confidence            57999999999999976 4668888876544

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=80.98  E-value=0.31  Score=48.37  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=24.8

Q ss_pred             cceeecccceeeehhhhh------hhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVIIL------SAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~------g~~vaV~~~~~~~~  672 (694)
                      ..||.|+||.||+|+...      ...||||......-
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~   48 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKD   48 (275)
T ss_pred             eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccc
Confidence            569999999999999753      34789988765443

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=80.97  E-value=0.34  Score=50.79  Aligned_cols=30  Identities=13%  Similarity=0.252  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. .|..||||+....
T Consensus         7 ~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~   37 (376)
T cd05598           7 KTIGIGAFGEVCLVRKVDTNALYAMKTLRKA   37 (376)
T ss_pred             EEEEeCCCeEEEEEEECCCCCEEEEEEEcHH
Confidence            46999999999999854 4679999987543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0667|consensus

Probab=80.88  E-value=0.32  Score=51.97  Aligned_cols=40  Identities=18%  Similarity=0.177  Sum_probs=34.1

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhHhHhhhhhhh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHLYRTKQQRIR  680 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~~~~~~~~~~  680 (694)
                      .+||+|.||.|.|+.=.. |..||+|+-......-+|+.++
T Consensus       192 e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~E  232 (586)
T KOG0667|consen  192 EVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIE  232 (586)
T ss_pred             EEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHH
Confidence            799999999999998655 6799999999888877777754

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=80.84  E-value=0.27  Score=49.05  Aligned_cols=31  Identities=19%  Similarity=0.173  Sum_probs=23.8

Q ss_pred             cceeecccceeeehhhhhh------hhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIILS------AMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g------~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|.....      ..||||......
T Consensus        11 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~   47 (283)
T cd05048          11 EELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA   47 (283)
T ss_pred             hcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC
Confidence            5799999999999987443      368888775443

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=80.81  E-value=0.19  Score=50.44  Aligned_cols=29  Identities=10%  Similarity=-0.044  Sum_probs=23.4

Q ss_pred             cceeecccceeeehhh--hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI--ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l--~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|+-  .+|..||||+...
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~   37 (290)
T cd07862           7 AEIGEGAYGKVFKARDLKNGGRFVALKRVRV   37 (290)
T ss_pred             eEeccCCCeEEEEEEEcCCCCeEEEEEEEec
Confidence            4699999999999975  3467899987654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=80.62  E-value=0.28  Score=49.06  Aligned_cols=30  Identities=17%  Similarity=0.115  Sum_probs=24.0

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..      ++..||+|+....
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~   46 (288)
T cd05050          11 RDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE   46 (288)
T ss_pred             ccccccccccEEEEEEcccCCCCcceeEEEEecCCC
Confidence            67899999999999864      3568999887543

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=80.61  E-value=0.3  Score=48.77  Aligned_cols=30  Identities=20%  Similarity=0.179  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhhh-----hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-----LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-----~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..     +|..||||.....
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~   44 (284)
T cd05081          10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHS   44 (284)
T ss_pred             eeccCCCCceEEEEEecCCcCCCCcEEEEEEeccC
Confidence            57999999999999753     5678999987644

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=80.54  E-value=0.27  Score=48.39  Aligned_cols=29  Identities=21%  Similarity=0.126  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+..++..||||+...
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~valK~~~~   40 (262)
T cd05071          12 VKLGQGCFGEVWMGTWNGTTRVAIKTLKP   40 (262)
T ss_pred             eecCCCCCCcEEEEEecCCceEEEEeccc
Confidence            46899999999999988877899998764

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=80.41  E-value=0.32  Score=47.62  Aligned_cols=32  Identities=16%  Similarity=0.145  Sum_probs=27.1

Q ss_pred             ccceeecccceeeehhhhhhhhHHHHHHHhhHh
Q psy3329         640 KSFLTLGNFGLISVGVIILSAMVYFSFYARHLY  672 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~  672 (694)
                      .+.||.|+||.||+|+.. |..||||.......
T Consensus        11 ~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~   42 (256)
T cd05039          11 GATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST   42 (256)
T ss_pred             eeeeecCCCceEEEEEec-CcEEEEEEeccchh
Confidence            368999999999999985 67899998877655

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=80.38  E-value=0.23  Score=49.80  Aligned_cols=31  Identities=13%  Similarity=0.060  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||.|+||.||+|+-. +|++||||......
T Consensus        11 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~   42 (291)
T cd07844          11 DKLGEGSYATVYKGRSKLTGQLVALKEIRLEH   42 (291)
T ss_pred             EEEeecCCeEEEEEEEcCCCcEEEEEEEeccc
Confidence            68999999999999976 67899999876443

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=80.34  E-value=0.27  Score=48.54  Aligned_cols=32  Identities=16%  Similarity=0.299  Sum_probs=24.6

Q ss_pred             cccceeecccceeeehhhhh-hh---hHHHHHHHhh
Q psy3329         639 SKSFLTLGNFGLISVGVIIL-SA---MVYFSFYARH  670 (694)
Q Consensus       639 ~~~~iG~G~fG~VYkg~l~~-g~---~vaV~~~~~~  670 (694)
                      ..+.||+|+||.||+|+... |.   +||||.....
T Consensus         9 ~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~   44 (268)
T cd05063           9 KQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPG   44 (268)
T ss_pred             EeeEecCCCCccEEEEEEecCCCCceEEEEEecccc
Confidence            34789999999999999863 32   6888876543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=80.31  E-value=0.36  Score=48.77  Aligned_cols=29  Identities=17%  Similarity=0.148  Sum_probs=23.2

Q ss_pred             cceeecccceeeehhh--------hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI--------ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l--------~~g~~vaV~~~~~  669 (694)
                      ..||.|+||.||+|+.        .++..||+|....
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~   57 (304)
T cd05101          21 KPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKD   57 (304)
T ss_pred             ceeeccCCceEEEEEEeccCCCCCCcceeEEeeeccc
Confidence            7899999999999974        2345789988764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=80.27  E-value=0.27  Score=50.52  Aligned_cols=30  Identities=17%  Similarity=-0.017  Sum_probs=24.2

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      +.||.|+||.||+|+.. +|.+||+|+....
T Consensus        11 ~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~   41 (333)
T cd06650          11 SELGAGNGGVVFKVSHKPSGLIMARKLIHLE   41 (333)
T ss_pred             ccccCCCCEEEEEEEECCCCcEEEEEEeecc
Confidence            57999999999999886 4668888865543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=80.24  E-value=0.34  Score=49.62  Aligned_cols=30  Identities=13%  Similarity=0.200  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      +.||.|+||.||+|+.. +|..||||+....
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~   54 (329)
T PTZ00263         24 ETLGTGSFGRVRIAKHKGTGEYYAIKCLKKR   54 (329)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHH
Confidence            68999999999999985 4678999987654

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=80.17  E-value=0.29  Score=48.65  Aligned_cols=30  Identities=20%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             ccceeecccceeeehhhh------hhhhHHHHHHHh
Q psy3329         640 KSFLTLGNFGLISVGVII------LSAMVYFSFYAR  669 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~  669 (694)
                      .+.||+|+||.||+|+..      .+..||||+...
T Consensus        11 ~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~   46 (277)
T cd05062          11 SRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNE   46 (277)
T ss_pred             eeeeccccCCeEEEEEeccCCCCCceeEEEEEeccc
Confidence            368999999999998753      345799987654

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=80.10  E-value=0.32  Score=48.54  Aligned_cols=30  Identities=27%  Similarity=0.239  Sum_probs=23.4

Q ss_pred             cceeecccceeeehh-----hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-----IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-----l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||.++     ..+|.+||||+....
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~   44 (283)
T cd05080          10 RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRE   44 (283)
T ss_pred             eecccCCCcEEEEeeEccccCCCCceEEEEEeccc
Confidence            579999999997754     346778999987654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG0659|consensus

Probab=80.08  E-value=0.3  Score=46.36  Aligned_cols=31  Identities=13%  Similarity=0.019  Sum_probs=23.1

Q ss_pred             ccceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ...+|+|.||.||||+ ..-|+.||+|--+..
T Consensus         7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~   38 (318)
T KOG0659|consen    7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLG   38 (318)
T ss_pred             hhhhcCcceEEEEEEEecCCCcEEEEEEeecc
Confidence            3579999999999997 334558888754443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	694
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-14
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-14
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-13
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-07
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-13
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-07
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		9e-13
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		8e-12
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		4e-08
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		9e-08
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-11
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		4e-11
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-10
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-07
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-10
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		7e-09
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-08
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-10
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-09
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-06
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		7e-10
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		1e-09
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		3e-05
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-09
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		3e-08
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		7e-08
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-09
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		8e-09
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		8e-09
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		1e-08
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		4e-08
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		1e-08
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		4e-08
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-08
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		2e-08
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		8e-08
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		2e-08
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		6e-08
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-08
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		2e-08
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		7e-08
2bnh_A	457	Porcine Ribonuclease Inhibitor Length = 457		3e-08
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		3e-08
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		4e-08
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		5e-08
3tsr_E	457	X-Ray Structure Of Mouse Ribonuclease Inhibitor Com		6e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		9e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		3e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-07
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-07
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		3e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-07
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-07
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		3e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-07
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		5e-07
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		7e-05
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		5e-07
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		7e-07
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		5e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		8e-07
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		1e-06
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		2e-06
1a4y_A	460	Ribonuclease Inhibitor-Angiogenin Complex Length =		2e-06
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-06
1z7x_W	461	X-Ray Structure Of Human Ribonuclease Inhibitor Com		2e-06
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-06
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-06
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-06
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		3e-06
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		3e-06
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		3e-06
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		3e-06
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		4e-06
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		4e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		4e-06
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		4e-06
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		4e-06
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		7e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		2e-05
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		4e-05
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-05
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-05
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-05
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		2e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-05
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		3e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-05
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		4e-05
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		4e-05
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		4e-05
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		4e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		2e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		4e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		5e-04

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
Query: 193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
           LDL +  L   L   AF   TKLR LYL+ N L      +  K L  L  L + +  L  
Sbjct: 42  LDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-FKELKNLETLWVTDNKLQA 99
Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
           LP   F +   L EL +  N L      +   L  L +L +GY+ LQ + +  F K+TSL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
           K L L  N+L+ +  G F  LT L  L+L+N  L R+ E  F    +   L+ L+L  NP
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD---SLEKLKMLQLQENP 216

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 103/279 (36%), Gaps = 66/279 (23%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
           + LD+  + L  +    F ++T L+ L L+ NKL+TL +G+F+ L +L  L + +  L  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
           L   VF +     +L ELRL  N L            +++P ++   FD L  L      
Sbjct: 100 LPIGVFDQ---LVNLAELRLDRNQL------------KSLPPRV---FDSLTKL------ 135
Query: 409 VFHENYTYPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRN 468
                 TY     L L  N L  LP G                          VF+   +
Sbjct: 136 ------TY-----LSLGYNELQSLPKG--------------------------VFDKLTS 158
Query: 469 ITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGN 528
           +  L L NN L    E +F                     +          +  ++L  N
Sbjct: 159 LKELRLYNNQLKRVPEGAFD---KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 529 PWKCDCN-IADMWEWATREKGDIGVLVGSTTPTEIGFGA 566
           PW C CN I  M +W  ++K D G+    T   E G  A
Sbjct: 216 PWDCTCNGIIYMAKW-LKKKADEGLGGVDTAGCEKGGKA 253

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 28/298 (9%)
Query: 69  LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
           LDL  N ++ +    F     LE L LN   ++ + P AF+NL +L+TL L  N+LK  +
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK--L 94
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
               V   L  L  LD+ ++ I  L D +F +   L++L + +N+L+ +      G N  
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-- 152
Query: 189 HLDSLDLSNC-----------HLKG------------PLSEDAFVNATKLRTLYLSGNPL 225
            L+ L L  C           HL G             + + +F    +L+ L +S  P 
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 226 SAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPL 285
                   L  L  L  LS+ +C L+ +P         L+ L++S+NP+     ++L  L
Sbjct: 213 LDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 286 ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
             L+ + +    L  +    F  +  L+ L +SGN+L TLE  +F ++ +L  L L++
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 31/252 (12%)
Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
           YL +QE ++  I    F +L  L  L LS N +R IE G F+ L SL  L L    LT +
Sbjct: 39  YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
              AF+ L+ L+ L            W              LR + I ++P   F     
Sbjct: 99  PTQAFEYLSKLREL------------W--------------LRNNPIESIPSYAFNRVPS 132
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
           LR L+L E + ++  ++    + LV+L  L+L  C+LK   +  A V   +L  L LSGN
Sbjct: 133 LRRLDLGELKRLEY-ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV---RLEELELSGN 188
Query: 224 PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
            L       + + LT L +L L +  ++ +  N F     L+EL++SHN L+     L +
Sbjct: 189 RLDLIRPG-SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247
Query: 284 PLESLEHLDMGY 295
           PL  LE + + +
Sbjct: 248 PLHRLERVHLNH 259

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 33/249 (13%)
Query: 150 ISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF 209
           ++ +P ++  N    R LNL EN +    + T   ++L HL+ L LS  +L   +   AF
Sbjct: 26  LAEVPASIPVNT---RYLNLQENSI--QVIRTDTFKHLRHLEILQLSK-NLVRKIEVGAF 79
Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
                L TL L  N L+    + A + L+KL  L LRN  +  +P+  F+R   L+ LD+
Sbjct: 80  NGLPSLNTLELFDNRLTTVP-TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 270 SHNPLID-----AFTAL------------------LSPLESLEHLDMGYSNLQRISRSTF 306
                ++     AF  L                  L+ L  LE L++  + L  I   +F
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 307 LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEEL 366
             +TSL+ L L   ++ T+E   F +L  L  L L++  L  L   +F   +    LE +
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLH---RLERV 255
Query: 367 RLSGNPLHV 375
            L+ NP H 
Sbjct: 256 HLNHNPWHC 264

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 114/279 (40%), Gaps = 62/279 (22%)
Query: 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
           +L++  +++Q I   TF  +  L+ L LS N +  +E G F  L  L+ LEL +  LT  
Sbjct: 39  YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-- 96
Query: 350 NETVFHENYTY-PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
             TV  + + Y   L EL L  NP+  +P     Y+   +P+    +   L  L  ++E 
Sbjct: 97  --TVPTQAFEYLSKLRELWLRNNPIESIPS----YAFNRVPSLRRLDLGELKRLEYISEA 150
Query: 409 VFHE--NYTYPDL-----------------EELRLSGNPLHVLPTGNXXXXXXXXXXXXX 449
            F    N  Y +L                 EEL LSGN L ++  G+             
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 450 XXXCKIDYLPPNVFNNTRNITSLNLANNNL-SMTSELSFQFXXXXXXXXXXXXXXXXXTH 508
               ++  +  N F++ +++  LNL++NNL S+  +L                       
Sbjct: 211 HA--QVATIERNAFDDLKSLEELNLSHNNLMSLPHDL----------------------- 245
Query: 509 ISPTVLRHNRAITSIKLVGNPWKCDCNIADMW-EWATRE 546
            +P        +  + L  NPW C+C++  +W  W  +E
Sbjct: 246 FTPL-----HRLERVHLNHNPWHCNCDV--LWLSWWLKE 277

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 31/252 (12%)
Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
           YL +QE ++  I    F +L  L  L LS N +R IE G F+ L SL  L L    LT +
Sbjct: 39  YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
              AF+ L+ L+ L            W              LR + I ++P   F     
Sbjct: 99  PTQAFEYLSKLREL------------W--------------LRNNPIESIPSYAFNRVPS 132
Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
           LR L+L E + ++  ++    + LV+L  L+L  C+LK   +  A V   +L  L LSGN
Sbjct: 133 LRRLDLGELKRLEY-ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALV---RLEELELSGN 188
Query: 224 PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
            L       + + LT L +L L +  ++ +  N F     L+EL++SHN L+     L +
Sbjct: 189 RLDLIRPG-SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247
Query: 284 PLESLEHLDMGY 295
           PL  LE + + +
Sbjct: 248 PLHRLERVHLNH 259

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 33/249 (13%)
Query: 150 ISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF 209
           ++ +P ++  N    R LNL EN +    + T   ++L HL+ L LS  +L   +   AF
Sbjct: 26  LAEVPASIPVNT---RYLNLQENSI--QVIRTDTFKHLRHLEILQLSK-NLVRKIEVGAF 79
Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
                L TL L  N L+    + A + L+KL  L LRN  +  +P+  F+R   L+ LD+
Sbjct: 80  NGLPSLNTLELFDNRLTTVP-TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 270 SHNPLID-----AFTAL------------------LSPLESLEHLDMGYSNLQRISRSTF 306
                ++     AF  L                  L+ L  LE L++  + L  I   +F
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 307 LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEEL 366
             +TSL+ L L   ++ T+E   F +L  L  L L++  L  L   +F   +    LE +
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHR---LERV 255
Query: 367 RLSGNPLHV 375
            L+ NP H 
Sbjct: 256 HLNHNPWHC 264

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 114/279 (40%), Gaps = 62/279 (22%)
Query: 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
           +L++  +++Q I   TF  +  L+ L LS N +  +E G F  L  L+ LEL +  LT  
Sbjct: 39  YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-- 96
Query: 350 NETVFHENYTY-PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
             TV  + + Y   L EL L  NP+  +P     Y+   +P+    +   L  L  ++E 
Sbjct: 97  --TVPTQAFEYLSKLRELWLRNNPIESIPS----YAFNRVPSLRRLDLGELKRLEYISEA 150
Query: 409 VFHE--NYTYPDL-----------------EELRLSGNPLHVLPTGNXXXXXXXXXXXXX 449
            F    N  Y +L                 EEL LSGN L ++  G+             
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 450 XXXCKIDYLPPNVFNNTRNITSLNLANNNL-SMTSELSFQFXXXXXXXXXXXXXXXXXTH 508
               ++  +  N F++ +++  LNL++NNL S+  +L                       
Sbjct: 211 HA--QVATIERNAFDDLKSLEELNLSHNNLMSLPHDL----------------------- 245
Query: 509 ISPTVLRHNRAITSIKLVGNPWKCDCNIADMW-EWATRE 546
            +P        +  + L  NPW C+C++  +W  W  +E
Sbjct: 246 FTPL-----HRLERVHLNHNPWHCNCDV--LWLSWWLKE 277

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 147/320 (45%), Gaps = 47/320 (14%)
Query: 65  TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFD-NLNHLKTLELSQNK 123
           TL + +L G    ++    F PLTSLE L+L   N+  I P++F  N+     L+L+ NK
Sbjct: 109 TLTQCNLDG---AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF----------ANNTWLRNLNLAENE 173
           +KS  +  L L   GK  TL LR S I+    N +            NT +  L+L+ N 
Sbjct: 166 VKSICEEDL-LNFQGKHFTL-LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223
Query: 174 LID-------------------LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATK 214
             +                   L  +  +G +  H +  D  N   KG       + A+ 
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG-------LEASG 276
Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
           ++T  LS + + A  L       T L +L+L    ++++  N F   T L +L++S N L
Sbjct: 277 VKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335
Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
               + +   L+ LE LD+ Y++++ +   +FL + +LK L L  N+L+++  G+F  LT
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395
Query: 335 HLSVLELN----NCGLTRLN 350
            L  + L+    +C   R++
Sbjct: 396 SLQKIWLHTNPWDCSCPRID 415

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 7/227 (3%)
Query: 69  LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
           L+L  N ++II+   F  L  LE L L+R ++  I   AF+ L +L TLEL  N+L +  
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
           +   V   L KL  L LR + I ++P   F     LR L+L E + +   ++    + L 
Sbjct: 129 NGAFVY--LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLS 185
Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
           +L  L+L+ C+L+   +    +   KL  L LSGN LSA     + + L  L +L +   
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLI---KLDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQS 241
Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY 295
            +  +  N F     L E++++HN L      L +PL  LE + + +
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 33/243 (13%)
Query: 153 LPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA 212
           +PD +  N    R LNL EN++  + V +   ++L HL+ L LS  H++  +   AF   
Sbjct: 58  VPDGISTNT---RLLNLHENQIQIIKVNSF--KHLRHLEILQLSRNHIR-TIEIGAFNGL 111
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
             L TL L  N L+    + A   L+KL  L LRN  +  +P+  F+R   L+ LD+   
Sbjct: 112 ANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 273 PLID-----AFTAL------------------LSPLESLEHLDMGYSNLQRISRSTFLKM 309
             +      AF  L                  L+PL  L+ LD+  ++L  I   +F  +
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
             L+ L +  ++++ +E   F NL  L  + L +  LT L   +F   +    LE + L 
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH---HLERIHLH 287
Query: 370 GNP 372
            NP
Sbjct: 288 HNP 290

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 109/271 (40%), Gaps = 55/271 (20%)
Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
           L++  + +Q I  ++F  +  L+ L LS N + T+E G F  L +L+ LEL +  LT + 
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 351 ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVF 410
              F        L+EL L  NP+  +P     Y+   IP+    +   L  L  ++E  F
Sbjct: 129 NGAF---VYLSKLKELWLRNNPIESIPS----YAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 411 H--ENYTYPDL-----------------EELRLSGNPLHVLPTGNXXXXXXXXXXXXXXX 451
               N  Y +L                 +EL LSGN L  +  G+               
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 452 XCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISP 511
             +I  +  N F+N +++  +NLA+NNL++     F                        
Sbjct: 242 --QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF------------------------ 275
Query: 512 TVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
           T L H   +  I L  NPW C+C+I  +  W
Sbjct: 276 TPLHH---LERIHLHHNPWNCNCDILWLSWW 303

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 95/202 (47%), Gaps = 13/202 (6%)
Query: 153 LPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA 212
            PD+ FA        NL +  + D   A T  + L  +D +  +N  +K   S       
Sbjct: 13  FPDDAFAETI---KANLKKKSVTD---AVTQNE-LNSIDQIIANNSDIK---SVQGIQYL 62
Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
             +R L L GN L   D+S ALK LT L  L L    L  LP   F + T L+EL +  N
Sbjct: 63  PNVRYLALGGNKLH--DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN 332
            L      +   L +L +L++ ++ LQ + +  F K+T+L  L LS N+L++L  G+F  
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 333 LTHLSVLELNNCGLTRLNETVF 354
           LT L  L L    L  + + VF
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVF 201

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 100/293 (34%), Gaps = 92/293 (31%)
Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
           L ++ +L +G + L  IS     ++T+L  LIL+GN+L++L +G+F  LT+L        
Sbjct: 62  LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL-------- 111
Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
                              +EL L  N L  LPD                 FD L     
Sbjct: 112 -------------------KELVLVENQLQSLPDGV---------------FDKLT---- 133
Query: 405 LNETVFHENYTYPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFN 464
                   N TY     L L+ N L  LP G                          VF+
Sbjct: 134 --------NLTY-----LNLAHNQLQSLPKG--------------------------VFD 154
Query: 465 NTRNITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIK 524
              N+T L+L+ N L    E  F                     +   V     ++  I 
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFD---KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211
Query: 525 LVGNPWKCDC-NIADMWEWATREKGDIGVLVGSTTPTEIGF-GASRKKKGLVC 575
           L  NPW C C  I  + EW  +  G +    GS  P      G+ +  + ++C
Sbjct: 212 LHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSGSGKPVRSIIC 264

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
           +R L L GN L   D+S ALK LT L  L L    L  LP   F + T L+EL +  N L
Sbjct: 65  VRYLALGGNKLH--DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
                 +   L +L +L + ++ LQ + +  F K+T+L  L L  N+L++L  G+F  LT
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 335 HLSVLELNNCGLTRLNETVF 354
            L  L LN+  L  + + VF
Sbjct: 182 QLKQLSLNDNQLKSVPDGVF 201

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
           YL ++  +L  +    F  LT+L +L L GN L+ +  GVF+ LTSL YL L+   L  +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
               FD L  LK L L+ N+L+S  D   V   L +L  L L Q+ + ++PD VF   T 
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDG--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 164 LRNLNLAEN 172
           L+ + L +N
Sbjct: 150 LQYIWLHDN 158

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 54/112 (48%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           L L    L  LP   F   T L +L +  N L      + + L SL +L++  + LQ + 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354
              F K+T LK L L+ N+L++L  G+F  LT L  L L    L  + + VF
Sbjct: 93  NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
           +LD+  ++L+ +    F ++TSL  L L GNKL++L +G+F  LT L+ L L+   L  L
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 350 NETVFHENYTYPDLEELRLSGNPLHVLPDS 379
              VF +      L+EL L+ N L  LPD 
Sbjct: 92  PNGVFDK---LTQLKELALNTNQLQSLPDG 118

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 4   GHPVYNDRRNLDNPGLITI--------------NLNANPIQPVE-GAFLVARSLLYLYMQ 48
           G P   ++ +L + GL T+              NL+ N +Q +  G F     L  L + 
Sbjct: 32  GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 49  ECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF 108
              L+ +    F +LT L+KL L GN L+ +  GVFD LT L+ L LN   L  I   AF
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Query: 109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
           D L +L+TL LS N+L+S          LGKL T+ L
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTITL 186

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
           + LDL+ +G++ L D  F   T L  LNL  N+L                          
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------------- 72
Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
              LS   F + T+L TL L+ N L++  L V    LT+L +L L    L  LP+  F R
Sbjct: 73  --TLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 261 FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
            T L+EL ++ N L          L +L+ L +  + LQ +    F ++  L+T+ L GN
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 321 KLE 323
           + +
Sbjct: 190 QFD 192

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
           + LDL +  L   LS+  F   TKL  L L  N L      V    LT+L  L L N  L
Sbjct: 38  EKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQL 95
Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT 310
           + LP   F   T L +L +  N L    + +   L  L+ L +  + LQ I    F K+T
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
           +L+TL LS N+L+++  G F  L  L  + L
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 35/147 (23%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
           E LD+  + L  +S +TF  +T L  L L  N+L+TL +G+F +LT L  L L N  L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
           L   VF        L++L L GN L  LP                  FD L         
Sbjct: 98  LPLGVFDH---LTQLDKLYLGGNQLKSLPSGV---------------FDRLT-------- 131
Query: 409 VFHENYTYPDLEELRLSGNPLHVLPTG 435
                     L+ELRL+ N L  +P G
Sbjct: 132 ---------KLKELRLNTNQLQSIPAG 149

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 4   GHPVYNDRRNLDNPGLITI--------------NLNANPIQPVE-GAFLVARSLLYLYMQ 48
           G P   ++ +L + GL T+              NL+ N +Q +  G F     L  L + 
Sbjct: 32  GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 49  ECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF 108
              L+ +    F +LT L+KL L GN L+ +  GVFD LT L+ L LN   L  I   AF
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Query: 109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
           D L +L+TL LS N+L+S          LGKL T+ L
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHG--AFDRLGKLQTITL 186

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 6/203 (2%)
Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
           + LDL +  L   LS+  F   TKL  L L  N L      V    LT+L  L L N  L
Sbjct: 38  EKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQL 95
Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT 310
           + LP   F   T L +L +  N L    + +   L  L+ L +  + LQ I    F K+T
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLEL--NNCGLTRLNETVFHENYTYPDLEELR- 367
           +L+TL LS N+L+++  G F  L  L  + L  N    +R  ET++   +   +  +++ 
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC-ETLYLSQWIRENSNKVKD 214
Query: 368 LSGNPLHVLPDSTKQYSMRTIPT 390
            +G  LH  PD       + + T
Sbjct: 215 GTGQNLHESPDGVTCSDGKVVRT 237

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 35/147 (23%)
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
           E LD+  + L  +S +TF  +T L  L L  N+L+TL +G+F +LT L  L L N  L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET 408
           L   VF        L++L L GN L  LP                  FD L         
Sbjct: 98  LPLGVFDH---LTQLDKLYLGGNQLKSLPSGV---------------FDRLT-------- 131
Query: 409 VFHENYTYPDLEELRLSGNPLHVLPTG 435
                     L+ELRL+ N L  +P G
Sbjct: 132 ---------KLKELRLNTNQLQSIPAG 149

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 167/363 (46%), Gaps = 37/363 (10%)
Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
           P L  +NL  N +  + +  F+   +L  L +   ++ KI    F N   L KLDLS N 
Sbjct: 73  PLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNH--LKTLELSQNKLKSHIDWTLV 133
           L   + G    L +L+ L+L +  +  +     + L +  L+ L+LS N LK        
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPG--C 190
Query: 134 LGNLGKLDTLDLRQSGIS-NLPDNVF--ANNTWLRNLNLAENELIDLDVATTLGQNLVHL 190
              +GKL  L L  + ++ +L + +    +NT ++NL+LA N+L+    +T  G    +L
Sbjct: 191 FQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNL 250
Query: 191 DSLDLS--NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
             LDLS  N H  G     +F     LR L L  N                + RLS R+ 
Sbjct: 251 TQLDLSYNNLHDVG---NGSFSYLPSLRYLSLEYN---------------NIQRLSPRSF 292
Query: 249 -GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL 307
            GLS L   +  R    Q + ++ +P ID F+     L+ LE+L+M  +N+     +TF 
Sbjct: 293 YGLSNLRYLSLKRAFTKQSVSLASHPNIDDFS--FQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 308 KMTSLKTLILSG--NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEE 365
            + SLK L LS     L+TL +  F +L H  +L LN   LT+ N      N T+  L +
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN---LTK-NHISKIANGTFSWLGQ 406
Query: 366 LRL 368
           LR+
Sbjct: 407 LRI 409

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           L+L +  L RLP   F R++ L  LD   N +      L   L  L+ L++ ++ L +IS
Sbjct: 30  LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347
             TF+  T+L  L L  N +  ++S  F+N  +L  L+L++ GL+
Sbjct: 90  DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 122/289 (42%), Gaps = 36/289 (12%)
Query: 37  LVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGV------------- 83
           L   S+  L +QE   S I+   F   T L +LDL+   L+ +  G+             
Sbjct: 248 LCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSV 307
Query: 84  --FDPLT--------SLEYLMLNRCNLT--YISPSAFDNLNHLKTLELSQNKLKSHIDWT 131
             FD L         SL +L + R N+   ++     + L +L+TL+LS N +++    +
Sbjct: 308 NHFDQLCQISAANFPSLTHLYI-RGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
           L L NL  L TL+L  +    L    F     L  L+LA   L  ++   +  QNL  L 
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRL-HINAPQSPFQNLHFLQ 425
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA--LKPLTKLHRLSLRNCG 249
            L+L+ C L    ++        LR L L GN      ++    L+ +  L  L L +CG
Sbjct: 426 VLNLTYCFLDTS-NQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCG 484
Query: 250 LSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
           L  +    FH    +  +D+SHN L          ++SL HL   Y NL
Sbjct: 485 LLSIDQQAFHSLGKMSHVDLSHNSLT------CDSIDSLSHLKGIYLNL 527

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 129/561 (22%), Positives = 214/561 (38%), Gaps = 75/561 (13%)
Query: 42  LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
           L +L +  C ++ I+   F +   L+ L L+GNPL  +     +   SL++L L +  ++
Sbjct: 56  LTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGIS 115
Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN 161
            +      NL +L++L L  N + S I +         L  LD + + I       + + 
Sbjct: 116 NLEFIPVHNLENLESLYLGSNHISS-IKFPKDFP-ARNLKVLDFQNNAIH------YISR 167
Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA---TKLRTL 218
             +R+L  A N  ++ +     G  L   DS    + +  G  +     N    +  ++L
Sbjct: 168 EDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSL 227
Query: 219 YLSG-NPLSAADLSVA-LKPLTKL--HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
           +L     +   D+S A LK L ++    L+L+    S + + TF  FT LQELD++   L
Sbjct: 228 WLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHL 287
Query: 275 ------IDAFTALLSPLESLEHLDMGYSNLQRISRSTF---------------------- 306
                 +     L   + S+ H D     L +IS + F                      
Sbjct: 288 KGLPSGMKGLNLLKKLVLSVNHFDQ----LCQISAANFPSLTHLYIRGNVKKLHLGVGCL 343
Query: 307 LKMTSLKTLILSGNKLETLESGLFQ--NLTHLSVLELNNCGLTRLNETVFHENYTYPDLE 364
            K+ +L+TL LS N +E  +    Q  NL+HL  L L++     L    F E    P LE
Sbjct: 344 EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKE---CPQLE 400
Query: 365 ELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL----FILNETVFHENYTYPDLE 420
            L L+   LH+             P   ++N  FL +L      L+ +  H     P L 
Sbjct: 401 LLDLAFTRLHI-----------NAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLR 449
Query: 421 ELRLSGNPLH-VLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLANNNL 479
            L L GN       T                  C +  +    F++   ++ ++L++N+L
Sbjct: 450 HLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Query: 480 SMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM 539
           +  S  S                      ISP +L      ++I L  NP  C C+    
Sbjct: 510 TCDSIDSLSHLKGIYLNLAANSINI----ISPRLLPILSQQSTINLSHNPLDCTCSNIHF 565
Query: 540 WEWATREKGDIGVLVGSTTPT 560
             W    K ++  L GS   T
Sbjct: 566 LTWY---KENLHKLEGSEETT 583

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 9/231 (3%)
Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
           YL + E  +  I    F +L  L  L L  N +R IE G F+ L SL  L L    LT I
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138
Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTL-VLGNLGKLDTLDLRQSGISNLPDNVFANNT 162
              AF+ L+ L+ L L  N ++S   +    + +L +LD  +L++  +  + +  F    
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK--LEYISEGAFEGLF 196
Query: 163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
            L+ LNL    + D+   T     LV L+ L++S  H    +   +F   + L+ L++  
Sbjct: 197 NLKYLNLGMCNIKDMPNLTP----LVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251
Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
           + +S  + + A   L  L  L+L +  LS LP + F     L EL + HNP
Sbjct: 252 SQVSLIERN-AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 109/249 (43%), Gaps = 33/249 (13%)
Query: 147 QSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE 206
           + G+S +P  + +N    R LNL EN  I +  A T  ++L HL+ L L    ++  +  
Sbjct: 63  RRGLSEVPQGIPSNT---RYLNLMENN-IQMIQADTF-RHLHHLEVLQLGRNSIR-QIEV 116
Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
            AF     L TL L  N L+    S A + L+KL  L LRN  +  +P+  F+R   L  
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175
Query: 267 LDISHNPLID-----AFTAL------------------LSPLESLEHLDMGYSNLQRISR 303
           LD+     ++     AF  L                  L+PL  LE L+M  ++   I  
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP 235
Query: 304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
            +F  ++SLK L +  +++  +E   F  L  L  L L +  L+ L   +F        L
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF---TPLRYL 292
Query: 364 EELRLSGNP 372
            EL L  NP
Sbjct: 293 VELHLHHNP 301

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 107/277 (38%), Gaps = 58/277 (20%)
Query: 290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL 349
           +L++  +N+Q I   TF  +  L+ L L  N +  +E G F  L  L+ LEL +  LT +
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138
Query: 350 NETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETV 409
               F        L EL L  NP+  +P     Y+   +P+ +  +   L  L  ++E  
Sbjct: 139 PSGAFE---YLSKLRELWLRNNPIESIPS----YAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 410 FHE--NYTYPDL-----------------EELRLSGNPLHVLPTGNXXXXXXXXXXXXXX 450
           F    N  Y +L                 EEL +SGN    +  G+              
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 451 XXCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHIS 510
              ++  +  N F+   ++  LNLA+NNLS      F                       
Sbjct: 252 S--QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF----------------------- 286
Query: 511 PTVLRHNRAITSIKLVGNPWKCDCNIADMW-EWATRE 546
            T LR+   +  + L  NPW CDC+I  +W  W  RE
Sbjct: 287 -TPLRY---LVELHLHHNPWNCDCDI--LWLAWWLRE 317

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 188/477 (39%), Gaps = 132/477 (27%)
Query: 19  LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKIN--------------------- 56
           L T+ L  NPIQ +  GAF    SL  L   E  L+ +                      
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 57  ----PQFFTNLTTLNKLDLSGN----------------------------PLRIIEPGVF 84
               P++F+NLT L  LDLS N                            P+  I+PG F
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 85  DPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG---NLGKLD 141
             +   +  + N           FD+LN +KT       L+ H    LVLG   N G L+
Sbjct: 198 KEIRLHKLTLRNN----------FDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLE 244
Query: 142 TLDLRQ-SGISNLPDNVFANNTWLRNLNLAENELIDL-DVATTLGQ-NLVHL-------- 190
             D     G+ NL    F     L  L+   +++IDL +  T +   +LV +        
Sbjct: 245 KFDKSALEGLCNLTIEEFR----LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 191 ------DSLDLSNCHLKGPLSEDAFVNATKLR-TLYLSGNPLSAADL-SVALKPLTKLHR 242
                   L+L NC   G        +  +L  T    GN  S  DL S+    L++ + 
Sbjct: 301 SYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NG 358
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           LS + C  S+    T    T L+ LD+S N +I   +  L  LE LEHLD  +SNL+++S
Sbjct: 359 LSFKGC-CSQSDFGT----TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMS 412
Query: 303 R-STFLK------------------------MTSLKTLILSGNKL-ETLESGLFQNLTHL 336
             S FL                         ++SL+ L ++GN   E     +F  L +L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 337 SVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIW 393
           + L+L+ C L +L+ T F+   +   L+ L ++ N L  +PD    +   T   +IW
Sbjct: 473 TFLDLSQCQLEQLSPTAFN---SLSSLQVLNMASNQLKSVPDGI--FDRLTSLQKIW 524

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 172/399 (43%), Gaps = 74/399 (18%)
Query: 37  LVARSLLYLYMQECTLSKI-----NPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLE 91
           LV   L Y Y+Q  T++ +     NPQ   NL+    LD+S NP+  I+   F  +   E
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQ--VNLS----LDMSLNPIDFIQDQAFQGIKLHE 208
Query: 92  YLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL----VLGNLGKLDTLDLRQ 147
             +    N + I  +   NL  L    L   + K   +  +    ++  L  +   + R 
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD---------SLDLSNC 198
           +  ++  D++   +            L ++   +  G ++ +L+         SL +  C
Sbjct: 269 TYTNDFSDDIVKFHC-----------LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317
Query: 199 HLKG-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL----HRLSLRNC-GLSR 252
            LK  P  +  F     L++L L+ N  S +   VAL  L+ L    + LS   C   S 
Sbjct: 318 QLKQFPTLDLPF-----LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372
Query: 253 LPANT-----------------FHRFTCLQELDISHNPL--IDAFTALLSPLESLEHLDM 293
           L  N+                 F     LQ LD  H+ L  +  F+A LS LE L +LD+
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDI 431
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLE--TLESGLFQNLTHLSVLELNNCGLTRLNE 351
            Y+N +      FL +TSL TL ++GN  +  TL S +F N T+L+ L+L+ C L +++ 
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISW 490
Query: 352 TVFHENYTYPDLEELRLSGNPLHVLPDS--TKQYSMRTI 388
            VF    T   L+ L +S N L  L  S   + YS+ T+
Sbjct: 491 GVFD---TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 172/399 (43%), Gaps = 74/399 (18%)
Query: 37  LVARSLLYLYMQECTLSKI-----NPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLE 91
           LV   L Y Y+Q  T++ +     NPQ   NL+    LD+S NP+  I+   F  +   E
Sbjct: 150 LVHVDLSYNYIQTITVNDLQFLRENPQ--VNLS----LDMSLNPIDFIQDQAFQGIKLHE 203
Query: 92  YLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL----VLGNLGKLDTLDLRQ 147
             +    N + I  +   NL  L    L   + K   +  +    ++  L  +   + R 
Sbjct: 204 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 263
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD---------SLDLSNC 198
           +  ++  D++   +            L ++   +  G ++ +L+         SL +  C
Sbjct: 264 TYTNDFSDDIVKFHC-----------LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 312
Query: 199 HLKG-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL----HRLSLRNC-GLSR 252
            LK  P  +  F     L++L L+ N  S +   VAL  L+ L    + LS   C   S 
Sbjct: 313 QLKQFPTLDLPF-----LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 367
Query: 253 LPANT-----------------FHRFTCLQELDISHNPL--IDAFTALLSPLESLEHLDM 293
           L  N+                 F     LQ LD  H+ L  +  F+A LS LE L +LD+
Sbjct: 368 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDI 426
Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLE--TLESGLFQNLTHLSVLELNNCGLTRLNE 351
            Y+N +      FL +TSL TL ++GN  +  TL S +F N T+L+ L+L+ C L +++ 
Sbjct: 427 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISW 485
Query: 352 TVFHENYTYPDLEELRLSGNPLHVLPDS--TKQYSMRTI 388
            VF    T   L+ L +S N L  L  S   + YS+ T+
Sbjct: 486 GVFD---TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 521

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 69  LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
           LDLS NPLR +    F     L+ L L+RC +  I   A+ +L+HL TL L+ N ++S  
Sbjct: 34  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 91
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
              L LG    L  L  L   ++ +++L +    +   L+ LN+A N +    +      
Sbjct: 92  ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 147
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
           NL +L+ LDLS+  ++        +  T LR L+    PL    L ++L P+        
Sbjct: 148 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 198
Query: 238 --TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
              +L  L+L    L  +P   F R T LQ++ +  NP
Sbjct: 199 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
           +PDN+ F+     +NL+L+ N L  L   +    +   L  LDLS C ++  + + A+ +
Sbjct: 23  IPDNLPFST----KNLDLSWNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 75
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
            + L TL L+GNP+ +  L  A   L+ L +L      L+ L          L+EL+++H
Sbjct: 76  LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
           N LI +F      S L +LEHLD+  + +Q I  +                         
Sbjct: 135 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 193
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
                K   LK L L  N+L+++  G+F  LT L  + L+    +C   R++
Sbjct: 194 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 245

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 69  LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
           LDLS NPLR +    F     L+ L L+RC +  I   A+ +L+HL TL L+ N ++S  
Sbjct: 35  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 92
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
              L LG    L  L  L   ++ +++L +    +   L+ LN+A N +    +      
Sbjct: 93  ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 148
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
           NL +L+ LDLS+  ++        +  T LR L+    PL    L ++L P+        
Sbjct: 149 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 199
Query: 238 --TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
              +L  L+L    L  +P   F R T LQ++ +  NP
Sbjct: 200 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
           +PDN+ F+     +NL+L+ N L  L   +    +   L  LDLS C ++  + + A+ +
Sbjct: 24  IPDNLPFST----KNLDLSWNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 76
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
            + L TL L+GNP+ +  L  A   L+ L +L      L+ L          L+EL+++H
Sbjct: 77  LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
           N LI +F      S L +LEHLD+  + +Q I  +                         
Sbjct: 136 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 194
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
                K   LK L L  N+L+++  G+F  LT L  + L+    +C   R++
Sbjct: 195 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 246

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 191/480 (39%), Gaps = 72/480 (15%)
Query: 55  INPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT--YISPSAFDNLN 112
           I+ + F NL  L  LDL  + +  + P  F  L  L  L L  C L+   +    F NL 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA--NNTWLRNLNLA 170
            L  L+LS+N+++S +      G L  L ++D   + I  + ++         L   +LA
Sbjct: 124 ALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 171 ENEL---IDLDVATTLG--QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
            N L   + +D    +   +N+V L+ LD+S                    T+ ++GN  
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMV-LEILDVSG----------------NGWTVDITGNFS 225
Query: 226 SAADLSVALKPLTKLHRLSLRNCGLSRLP---ANTFHRF--TCLQELDISHNPLIDAFTA 280
           +A   S A   L   H +     G   +     NTF     + ++ LD+SH  +    + 
Sbjct: 226 NAISKSQAFS-LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 281 LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE 340
           +   L+ L+ L++ Y+ + +I+   F  + +L+ L LS N L  L S  F  L  ++ ++
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 341 LNNCGLTRLNETVF-----------HEN-----YTYPDLEELRLSGNPLHVLPDSTKQYS 384
           L    +  + +  F            +N     +  P + ++ LSGN L  LP      +
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404
Query: 385 MRTIPTQIWKNFDFLVIL--------FILNETVF---------HENYTYPDLEELRLSGN 427
           +  +     +N D L  L         ILN+  F          EN   P LE+L L  N
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN---PSLEQLFLGEN 461
Query: 428 PLHVLPTGNXXXXXXXXXXXXXXXXCKIDY---LPPNVFNNTRNITSLNLANNNLSMTSE 484
            L +                        +Y   LPP VF++   +  L+L +N L++ S 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 24/216 (11%)
Query: 69  LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS-H 127
           LDLS NPLR +    F     L+ L L+RC +  I   A+ +L+HL TL L+ N ++S  
Sbjct: 35  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNL 187
           +     L +L KL  L+   + + N P     +   L+ LN+A N +    +      NL
Sbjct: 95  LGAFSGLSSLQKLVALETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFS-NL 150
Query: 188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL---------- 237
            +L+ LDLS+  ++        +  T LR L+    PL    L ++L P+          
Sbjct: 151 TNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAFKE 201
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
            +L  L+L    L  +P   F R T LQ++ +  NP
Sbjct: 202 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
           +PDN+ F+     +NL+L+ N L  L   +    +   L  LDLS C ++  + + A+ +
Sbjct: 24  IPDNLPFST----KNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 76
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
            + L TL L+GNP+ +  L  A   L+ L +L      L+ L          L+EL+++H
Sbjct: 77  LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
           N LI +F      S L +LEHLD+  + +Q I  +                         
Sbjct: 136 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 194
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
                K   LK L L  N+L+++  G+F  LT L  + L+    +C   R++
Sbjct: 195 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 246

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 69  LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
           LDLS NPLR +    F     L+ L L+RC +  I   A+ +L+HL TL L+ N ++S  
Sbjct: 34  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 91
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
              L LG    L  L  L   ++ +++L +    +   L+ LN+A N +    +      
Sbjct: 92  ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 147
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
           NL +L+ LDLS+  ++        +  T LR L+    PL    L ++L P+        
Sbjct: 148 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 198
Query: 238 --TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
              +L  L+L    L  +P   F R T LQ++ +  NP
Sbjct: 199 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
           +PDN+ F+     +NL+L+ N L  L   +    +   L  LDLS C ++  + + A+ +
Sbjct: 23  IPDNLPFST----KNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 75
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
            + L TL L+GNP+ +  L  A   L+ L +L      L+ L          L+EL+++H
Sbjct: 76  LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
           N LI +F      S L +LEHLD+  + +Q I  +                         
Sbjct: 135 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 193
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
                K   LK L L  N+L+++  G+F  LT L  + L+    +C   R++
Sbjct: 194 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 245

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 21  TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
           T++ +   +  V         +LYLY  +  ++K+ P  F  LT L +LDL  N L ++ 
Sbjct: 21  TVDCSGKSLASVPTGIPTTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 81  PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
            GVFD LT L  L LN   L  I   AFDNL  L  + L  N
Sbjct: 79  AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 69  LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
           LDLS NPLR +    F     L+ L L+RC +  I   A+ +L+HL TL L+ N ++S  
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 90
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
              L LG    L  L  L   ++ +++L +    +   L+ LN+A N +    +      
Sbjct: 91  ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 146
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
           NL +L+ LDLS+  ++        +  T LR L+    PL    L ++L P+        
Sbjct: 147 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 238 --TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
              +L  L+L    L  +P   F R T LQ++ +  NP
Sbjct: 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 43/232 (18%)
Query: 153 LPDNV-FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
           +PDN+ F+     +NL+L+ N L  L   +    +   L  LDLS C ++  + + A+ +
Sbjct: 22  IPDNLPFST----KNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQT-IEDGAYQS 74
Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
            + L TL L+GNP+ +  L  A   L+ L +L      L+ L          L+EL+++H
Sbjct: 75  LSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 272 NPLIDAFT--ALLSPLESLEHLDMGYSNLQRISRSTF----------------------- 306
           N LI +F      S L +LEHLD+  + +Q I  +                         
Sbjct: 134 N-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 307 ----LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
                K   LK L L  N+L+++  G+F  LT L  + L+    +C   R++
Sbjct: 193 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244

>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor Length = 457

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 160/400 (40%), Gaps = 59/400 (14%)
Query: 16  NPGLITINLNANPIQPVEGAFLVARSLL-------YLYMQECTLSKIN----PQFFTNLT 64
           NP L  + L  N +    G  LV + L         L +Q C+L++      P    +L 
Sbjct: 51  NPSLTELCLRTNELGDA-GVHLVLQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLP 109
Query: 65  TLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLK 115
           TL +L LS NPL     R++  G+ DP   LE L L  C LT  S     S       LK
Sbjct: 110 TLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRATRALK 169
Query: 116 TLELSQNKLKSHIDWTLVLG---NLGKLDTLDLRQSGI--SNLPD--NVFANNTWLRNLN 168
            L +S N +       L  G   +  +L+TL L   G+  +N  D   + A+   LR L+
Sbjct: 170 ELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQASLRELD 229
Query: 169 LAENELIDLDVAT---TLGQNLVHLDSLDLSNCHLKGPLSED---AFVNATKLRTLYLSG 222
           L  N L D  +A     L      L +L L  C +      D          L+ L L+G
Sbjct: 230 LGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKELSLAG 289
Query: 223 NPLS--AADLSVA--LKPLTKLHRLSLRNCGLSRLPANTFHRFTC----LQELDISHNPL 274
           N L    A L     L+P  +L  L +++C L+                L EL +S N L
Sbjct: 290 NKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKL 349
Query: 275 IDA-----FTALLSPLESLEHLDMGYSNLQRISRSTFLKM----TSLKTLILSGNKLETL 325
            D+       AL  P  +L  L +G   +     S+   +     SL+ L LS N +   
Sbjct: 350 GDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSLRELDLSNNCVG-- 407
Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEE 365
           + G+ Q    L  LE   C L +L   V ++ Y   ++E+
Sbjct: 408 DPGVLQ---LLGSLEQPGCALEQL---VLYDTYWTEEVED 441

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 21  TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
           T++ +   +  V         +LYLY  +  ++K+ P  F  LT L +LDL  N L ++ 
Sbjct: 13  TVDCSGKSLASVPTGIPTTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 81  PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
            GVFD LT L  L LN   L  I   AFDNL  L  + L  N
Sbjct: 71  AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 21  TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
           T++ +   +  V         +LYLY     ++K+ P  F  LT L +LDL  N L ++ 
Sbjct: 13  TVDCSGKSLASVPTGIPTTTQVLYLYDNR--ITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 81  PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
            GVFD LT L  L LN   L  I   AFDNL  L  + L  N
Sbjct: 71  AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 129/294 (43%), Gaps = 43/294 (14%)
Query: 65  TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFD-NLNHLKTLELSQNK 123
           TL + +L G    ++    F PLTSLE L+L   N+  I P++F  N+     L+L+ NK
Sbjct: 109 TLTQCNLDG---AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165
Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
           +KS  +  L L   GK  TL LR S I+ L D    N  WL       N   +  + T  
Sbjct: 166 VKSICEEDL-LNFQGKHFTL-LRLSSIT-LQD---MNEYWL-GWEKCGNPFKNTSITT-- 216
Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAF--VNATKLRTLYLSGN-PLSAADLSVALKPLTKL 240
                    LDLS    K  +++  F  +  TK+++L LS +  + ++      K     
Sbjct: 217 ---------LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
               L   G+           TC    D+S + +     ++ S    LE L +  + + +
Sbjct: 268 TFKGLEASGVK----------TC----DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313
Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
           I  + F  +T LK L L  N+L+++  G+F  LT L  + L+    +C   R++
Sbjct: 314 IDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 367

>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed With Mouse Ribonuclease 1 Length = 457

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 89/212 (41%), Gaps = 27/212 (12%)
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALK----PLTKLH 241
            +V LD   L+    K   S  A      L  L L  N L    + + L+    P  K+ 
Sbjct: 27  EVVRLDDCGLTEVRCKDISS--AVQANPALTELSLRTNELGDGGVGLVLQGLQNPTCKIQ 84
Query: 242 RLSLRNCGLSR-----LPANTFHRFTCLQELDISHNPLIDAFTALLS-----PLESLEHL 291
           +LSL+NCGL+      LP       + L+EL ++ NP+ DA   LL      P   LE L
Sbjct: 85  KLSLQNCGLTEAGCGILPG-MLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKL 143
Query: 292 DMGYSNLQRIS----RSTFLKMTSLKTLILSGNKL-----ETLESGLFQNLTHLSVLELN 342
            + Y NL   S     S        K L+LS N L       L  GL  +   L  L+L 
Sbjct: 144 QLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLE 203
Query: 343 NCGLTRLN-ETVFHENYTYPDLEELRLSGNPL 373
           NCG+T  N + +     +   L+EL LS N L
Sbjct: 204 NCGITAANCKDLCDVVASKASLQELDLSSNKL 235

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 148/352 (42%), Gaps = 62/352 (17%)
Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
           T L  LDLS N L ++    F  L  LEY  L   N+ ++   +   L +++ L L ++ 
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307
Query: 124 LKSHIDWTLVLGNLGKLDT-----------LDLRQSGISNLPDNVF-------------- 158
            K  I     L +L K+D            L++  + I  +  N+F              
Sbjct: 308 TKQSIS----LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363
Query: 159 -------ANNTW-------LRNLNLAENEL--IDLDVATTLGQNLVHLDSLDLSNCHLKG 202
                   N T+       L  LNL +N++  I+ D  + LG    HL+ LDL    +  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG----HLEVLDLGLNEIGQ 419
Query: 203 PLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCGLSRLPA--NTFH 259
            L+   +     +  +YLS N  L     S AL P   L RL LR   L  + +  + F 
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQ 477
Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST-------FLK-MTS 311
               L  LD+S+N + +    +L  LE LE LD+ ++NL R+ +         FLK ++ 
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
           L  L L  N  + +   +F++L  L +++L    L  L  +VF+   +   L
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
           T +  L+L +  L RLPA  F R++ L  LD+  N +      L   L  L+ L++ ++ 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347
           L ++S  TF   T+L  L L  N ++ +++  F    +L  L+L++ GL+
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 148/352 (42%), Gaps = 62/352 (17%)
Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
           T L  LDLS N L ++    F  L  LEY  L   N+ ++   +   L +++ L L ++ 
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 312
Query: 124 LKSHIDWTLVLGNLGKLDT-----------LDLRQSGISNLPDNVF-------------- 158
            K  I     L +L K+D            L++  + I  +  N+F              
Sbjct: 313 TKQSIS----LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 368
Query: 159 -------ANNTW-------LRNLNLAENEL--IDLDVATTLGQNLVHLDSLDLSNCHLKG 202
                   N T+       L  LNL +N++  I+ D  + LG    HL+ LDL    +  
Sbjct: 369 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG----HLEVLDLGLNEIGQ 424
Query: 203 PLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCGLSRLPA--NTFH 259
            L+   +     +  +YLS N  L     S AL P   L RL LR   L  + +  + F 
Sbjct: 425 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQ 482
Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST-------FLK-MTS 311
               L  LD+S+N + +    +L  LE LE LD+ ++NL R+ +         FLK ++ 
Sbjct: 483 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 542
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
           L  L L  N  + +   +F++L  L +++L    L  L  +VF+   +   L
Sbjct: 543 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 594

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
           T +  L+L +  L RLPA  F R++ L  LD+  N +      L   L  L+ L++ ++ 
Sbjct: 30  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347
           L ++S  TF   T+L  L L  N ++ +++  F    +L  L+L++ GL+
Sbjct: 90  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 148/352 (42%), Gaps = 62/352 (17%)
Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
           T L  LDLS N L ++    F  L  LEY  L   N+ ++   +   L +++ L L ++ 
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 317
Query: 124 LKSHIDWTLVLGNLGKLDT-----------LDLRQSGISNLPDNVF-------------- 158
            K  I     L +L K+D            L++  + I  +  N+F              
Sbjct: 318 TKQSIS----LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 373
Query: 159 -------ANNTW-------LRNLNLAENEL--IDLDVATTLGQNLVHLDSLDLSNCHLKG 202
                   N T+       L  LNL +N++  I+ D  + LG    HL+ LDL    +  
Sbjct: 374 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG----HLEVLDLGLNEIGQ 429
Query: 203 PLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCGLSRLPA--NTFH 259
            L+   +     +  +YLS N  L     S AL P   L RL LR   L  + +  + F 
Sbjct: 430 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQ 487
Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST-------FLK-MTS 311
               L  LD+S+N + +    +L  LE LE LD+ ++NL R+ +         FLK ++ 
Sbjct: 488 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 547
Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
           L  L L  N  + +   +F++L  L +++L    L  L  +VF+   +   L
Sbjct: 548 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 599

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
           T +  L+L +  L RLPA  F R++ L  LD+  N +      L   L  L+ L++ ++ 
Sbjct: 35  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT 347
           L ++S  TF   T+L  L L  N ++ +++  F    +L  L+L++ GL+
Sbjct: 95  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 106/247 (42%), Gaps = 15/247 (6%)
Query: 57  PQFFTNLTTLNKLDLSGNP---LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNH 113
           P     L+TL KL LS N    L  I    F  LT L   +        +     +NL +
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS--IKGNTKRLELGTGCLENLEN 351
Query: 114 LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE 173
           L+ L+LS + +++     L L NL  L +L+L  +   +L    F     L  L+LA   
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV- 232
           L   D  +   QNL  L  L+LS+  L    SE  F     L+ L L GN     ++   
Sbjct: 412 LKVKDAQSPF-QNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 233 -ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291
            +L+ L +L  L L  C LS +  + F     +  +D+SHN L        S +E+L HL
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS------SSIEALSHL 523
Query: 292 DMGYSNL 298
              Y NL
Sbjct: 524 KGIYLNL 530

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 45  LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
           LY+ +  ++K+ P  F +L  L +L L  N L  +  GVFD LT L  L L    LT + 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF 158
            + FD L HLK L +  NKL    +    +  L  L  L L Q+ + ++P   F
Sbjct: 105 SAVFDRLVHLKELFMCCNKL---TELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 6/137 (4%)
Query: 88  TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
           T+ + L L+   +T + P  FD+L +LK L L  N+L +      V  +L +L  LDL  
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDLGT 97
Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
           + ++ LP  VF     L+ L +  N+L +L       + L HL  L L    LK  +   
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI---ERLTHLTHLALDQNQLKS-IPHG 153
Query: 208 AFVNATKLRTLYLSGNP 224
           AF   + L   YL GNP
Sbjct: 154 AFDRLSSLTHAYLFGNP 170

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 167/426 (39%), Gaps = 110/426 (25%)
Query: 19  LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKIN--------------------- 56
           L T+ L  NPIQ +  GAF    SL  L   E  L+ +                      
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Query: 57  ----PQFFTNLTTLNKLDLSGN----------------------------PLRIIEPGVF 84
               P++F+NLT L  LDLS N                            P+  I+PG F
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 85  DPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG---NLGKLD 141
             +   +  + N           FD+LN +KT       L+ H    LVLG   N G L+
Sbjct: 198 KEIRLHKLTLRNN----------FDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLE 244
Query: 142 TLDLRQ-SGISNLPDNVFANNTWLRNLNLAENELIDL-DVATTLGQ-NLVHL-------- 190
             D     G+ NL    F     L  L+   +++IDL +  T +   +LV +        
Sbjct: 245 KFDKSALEGLCNLTIEEFR----LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 191 ------DSLDLSNCHLKGPLSEDAFVNATKLR-TLYLSGNPLSAADL-SVALKPLTKLHR 242
                   L+L NC   G        +  +L  T    GN  S  DL S+    L++ + 
Sbjct: 301 SYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NG 358
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           LS + C  S+    T    T L+ LD+S N +I   +  L  LE LEHLD  +SNL+++S
Sbjct: 359 LSFKGC-CSQSDFGT----TSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMS 412
Query: 303 R-STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
             S FL + +L  L +S        +G+F  L+ L VL        ++    F EN+   
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL--------KMAGNSFQENFLPD 464
Query: 362 DLEELR 367
              ELR
Sbjct: 465 IFTELR 470

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 129/292 (44%), Gaps = 31/292 (10%)
Query: 22  INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
           +NLN   I+ ++  AF  A ++  LYM    +  + P  F N+  L  L L  N L  + 
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 81  PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV------- 133
            G+F     L  L ++  NL  I    F     L+ L+LS N+L +H+D +L+       
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHAN 198
Query: 134 -----LGNLG---KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
                L  L     ++ LD   + I+ +   V   N  L  L L  N L D    T    
Sbjct: 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD----TAWLL 251
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
           N   L  +DLS   L+  +    FV   +L  LY+S N L A  L++  +P+  L  L L
Sbjct: 252 NYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDL 308
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
            +  L  +  N   +F  L+ L + HN ++   T  LS   +L++L + +++
Sbjct: 309 SHNHLLHVERNQ-PQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHND 356

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           ++ +N  + +LPA     F  ++ L+++   + +  T   +   +++ L MG++ ++ + 
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
              F  +  L  L+L  N L +L  G+F N   L+ L ++N  L R+ +  F    +   
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS--- 172
Query: 363 LEELRLSGNPL-HV 375
           L+ L+LS N L HV
Sbjct: 173 LQNLQLSSNRLTHV 186

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 298 LQRISRSTFLKMTSLKTLILSGN-KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
           L  I  + F  +T L+ L LS N +L  ++   F+ L HL  L L+ CGL  L   +F  
Sbjct: 67  LAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFR- 125
Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY 416
                 L+ L L  N L  LPD+T            +++   L  LF+    +       
Sbjct: 126 --GLAALQYLYLQDNNLQALPDNT------------FRDLGNLTHLFLHGNRI------- 164
Query: 417 PDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNITSLNLAN 476
           P + E    G  LH L                      +  + P+ F +   + +L L  
Sbjct: 165 PSVPEHAFRG--LHSL-------------DRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 477 NNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNPWKCDCNI 536
           NNLSM                           +   VL   R++  ++L  NPW CDC  
Sbjct: 210 NNLSM---------------------------LPAEVLVPLRSLQYLRLNDNPWVCDCRA 242
Query: 537 ADMWEWATREKG 548
             +W W  + +G
Sbjct: 243 RPLWAWLQKFRG 254

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 129/292 (44%), Gaps = 31/292 (10%)
Query: 22  INLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
           +NLN   I+ ++  AF  A ++  LYM    +  + P  F N+  L  L L  N L  + 
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133
Query: 81  PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV------- 133
            G+F     L  L ++  NL  I    F     L+ L+LS N+L +H+D +L+       
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHAN 192
Query: 134 -----LGNLG---KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
                L  L     ++ LD   + I+ +   V   N  L  L L  N L D    T    
Sbjct: 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD----TAWLL 245
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
           N   L  +DLS   L+  +    FV   +L  LY+S N L A  L++  +P+  L  L L
Sbjct: 246 NYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDL 302
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
            +  L  +  N   +F  L+ L + HN ++   T  LS   +L++L + +++
Sbjct: 303 SHNHLLHVERNQ-PQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHND 350

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           ++ +N  + +LPA     F  ++ L+++   + +  T   +   +++ L MG++ ++ + 
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109
Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
              F  +  L  L+L  N L +L  G+F N   L+ L ++N  L R+ +  F    +   
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS--- 166
Query: 363 LEELRLSGNPL 373
           L+ L+LS N L
Sbjct: 167 LQNLQLSSNRL 177

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 28/192 (14%)
Query: 69  LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
           LDLS NPLR +    F     L+ L L+RC +  I   A+ +L+HL TL L+ N ++S  
Sbjct: 57  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 114
Query: 129 DWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
              L LG    L  L  L   ++ +++L +    +   L+ LN+A N +    +      
Sbjct: 115 ---LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS- 170
Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL-------- 237
           NL +L+ LDLS+  ++        +  T LR L+    PL    L ++L P+        
Sbjct: 171 NLTNLEHLDLSSNKIQS-------IYCTDLRVLH--QMPLLNLSLDLSLNPMNFIQPGAF 221
Query: 238 --TKLHRLSLRN 247
              +LH+L+LRN
Sbjct: 222 KEIRLHKLTLRN 233

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 170/430 (39%), Gaps = 105/430 (24%)
Query: 19  LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKIN--------------------- 56
           L T+ L  NPIQ +  GAF    SL  L   E  L+ +                      
Sbjct: 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161
Query: 57  ----PQFFTNLTTLNKLDLSGN----------------------------PLRIIEPGVF 84
               P++F+NLT L  LDLS N                            P+  I+PG F
Sbjct: 162 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 221
Query: 85  DPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG---NLGKLD 141
             +   +  + N           FD+LN +KT       L+ H    LVLG   N G L+
Sbjct: 222 KEIRLHKLTLRNN----------FDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLE 268
Query: 142 TLDLRQ-SGISNLPDNVFANNTWLRNLNLAENELIDL-DVATTLGQ-NLVHL-------- 190
             D     G+ NL    F     L  L+   + +IDL +  T +   +LV +        
Sbjct: 269 KFDKSALEGLCNLTIEEFR----LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF 324
Query: 191 ------DSLDLSNCHLKGPLSEDAFVNATKLR-TLYLSGNPLSAADL-SVALKPLTKLHR 242
                   L+L NC   G        +  +L  T    GN  S  DL S+    L++ + 
Sbjct: 325 SYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NG 382
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           LS + C       + F   + L+ LD+S N +I   +  L  LE LEHLD  +SNL+++S
Sbjct: 383 LSFKGC----CSQSDFGTIS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMS 436
Query: 303 R-STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCGLTRLNETVFHE--NY 358
             S FL + +L  L +S        +G+F  L+ L VL++  N         +F E  N 
Sbjct: 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 496
Query: 359 TYPDLEELRL 368
           T+ DL + +L
Sbjct: 497 TFLDLSQCQL 506

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 132/314 (42%), Gaps = 31/314 (9%)
Query: 37  LVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN 96
           L   S+  + +Q+   S ++   F   T + +LDL+   L  +  G+ + + SL+ L+LN
Sbjct: 250 LCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI-EGMNSLKKLVLN 308
Query: 97  R------CNLTYIS-PS------------------AFDNLNHLKTLELSQNKLKSHIDWT 131
                  C +   S PS                    + L +L+ L+LS + +++     
Sbjct: 309 ANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCN 368
Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
           L L NL  L  L+L  +    L D  F     L  L++A   L  +    +  QNL  L 
Sbjct: 369 LQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL-HVKAPHSPFQNLHLLR 427
Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA--LKPLTKLHRLSLRNCG 249
            L+LS+C L    ++        LR L L GN      +S    L+ +  L  L L +C 
Sbjct: 428 VLNLSHCLLDTS-NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCN 486
Query: 250 LSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
           L  +    FH    +  LD+SHN L       LS L+ L +L+M  +N++ I       +
Sbjct: 487 LLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPAL 545
Query: 310 TSLKTLILSGNKLE 323
           +    + LS N L+
Sbjct: 546 SQQSIINLSHNPLD 559

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 110/243 (45%), Gaps = 12/243 (4%)
Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
           P    ++L  N I  + +G F   ++L  L +    +SKI+P  F  L  L +L LS N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           L+ +   +  P T L+ L ++   +T +  S F+ LN +  +EL  N LKS         
Sbjct: 112 LKELPEKM--PKT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
            + KL  + +  + I+ +P  +  +   L  L+L  N++  +D A+  G N  +L  L L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLN--NLAKLGL 223
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
           S   +   +   +  N   LR L+L+ N L    +   L     +  + L N  +S + +
Sbjct: 224 SFNSISA-VDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 256 NTF 258
           N F
Sbjct: 281 NDF 283

>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex Length = 460

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 128/306 (41%), Gaps = 48/306 (15%)
Query: 16  NPGLITINLNANPIQPVEGAFLVARSLL-------YLYMQECTLSKINPQFFTN----LT 64
           NP L  +NL +N +  V G   V + L         L +Q C L+       ++    L 
Sbjct: 54  NPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 112
Query: 65  TLNKLDLSGN-----PLRIIEPGVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLK 115
           TL +L LS N      L+++  G+ DP   LE L L  C+L+  S     S        K
Sbjct: 113 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 172
Query: 116 TLELSQNKLKSHIDWTLVLG---NLGKLDTLDLRQSGIS--NLPD--NVFANNTWLRNLN 168
            L +S N +       L  G   +  +L+ L L   G++  N  D   + A+   LR L 
Sbjct: 173 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 232
Query: 169 LAENELIDLDVATTLGQNLVH----LDSLDLSNCHLKGPLSED---AFVNATKLRTLYLS 221
           L  N+L D+ +A  L   L+H    L +L +  C +      D          L+ L L+
Sbjct: 233 LGSNKLGDVGMA-ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291
Query: 222 GNPLS--AADL--SVALKPLTKLHRLSLRNCGLSRLPANTF------HRFTCLQELDISH 271
           GN L    A L     L+P  +L  L +++C  +    + F      +RF  L EL IS+
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF--LLELQISN 349
Query: 272 NPLIDA 277
           N L DA
Sbjct: 350 NRLEDA 355

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 110/243 (45%), Gaps = 12/243 (4%)
Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
           P    ++L  N I  + +G F   ++L  L +    +SKI+P  F  L  L +L LS N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           L+ +   +  P T L+ L ++   +T +  S F+ LN +  +EL  N LKS         
Sbjct: 112 LKELPEKM--PKT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
            + KL  + +  + I+ +P  +  +   L  L+L  N++  +D A+  G N  +L  L L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLN--NLAKLGL 223
Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
           S   +   +   +  N   LR L+L+ N L    +   L     +  + L N  +S + +
Sbjct: 224 SFNSISA-VDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 256 NTF 258
           N F
Sbjct: 281 NDF 283

>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed With Ribonuclease I Length = 461

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 128/306 (41%), Gaps = 48/306 (15%)
Query: 16  NPGLITINLNANPIQPVEGAFLVARSLL-------YLYMQECTLSKINPQFFTN----LT 64
           NP L  +NL +N +  V G   V + L         L +Q C L+       ++    L 
Sbjct: 55  NPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113
Query: 65  TLNKLDLSGN-----PLRIIEPGVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLK 115
           TL +L LS N      L+++  G+ DP   LE L L  C+L+  S     S        K
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 116 TLELSQNKLKSHIDWTLVLG---NLGKLDTLDLRQSGIS--NLPD--NVFANNTWLRNLN 168
            L +S N +       L  G   +  +L+ L L   G++  N  D   + A+   LR L 
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 169 LAENELIDLDVATTLGQNLVH----LDSLDLSNCHLKGPLSED---AFVNATKLRTLYLS 221
           L  N+L D+ +A  L   L+H    L +L +  C +      D          L+ L L+
Sbjct: 234 LGSNKLGDVGMA-ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292
Query: 222 GNPLS--AADL--SVALKPLTKLHRLSLRNCGLSRLPANTF------HRFTCLQELDISH 271
           GN L    A L     L+P  +L  L +++C  +    + F      +RF  L EL IS+
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF--LLELQISN 350
Query: 272 NPLIDA 277
           N L DA
Sbjct: 351 NRLEDA 356

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 92/259 (35%), Gaps = 79/259 (30%)
Query: 298 LQRISRSTFLKMTSLKTLILSGN-KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
           L RI  + F  +  L+ L LS N +L +++   F  L  L  L L+ CGL  L   +F  
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR- 126
Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI-------LNETV 409
                 L+ L L  N L  LPD T            +++   L  LF+       + E  
Sbjct: 127 --GLAALQYLYLQDNALQALPDDT------------FRDLGNLTHLFLHGNRISSVPERA 172
Query: 410 FHENYTYPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNI 469
           F   ++   L+ L L  N                          ++ ++ P+ F +   +
Sbjct: 173 FRGLHS---LDRLLLHQN--------------------------RVAHVHPHAFRDLGRL 203
Query: 470 TSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNP 529
            +L L  NNLS                            +    L   RA+  ++L  NP
Sbjct: 204 MTLYLFANNLSA---------------------------LPTEALAPLRALQYLRLNDNP 236
Query: 530 WKCDCNIADMWEWATREKG 548
           W CDC    +W W  + +G
Sbjct: 237 WVCDCRARPLWAWLQKFRG 255

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 77  RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
           RI   G+F  L  L  L L R  LT I P+AF+  +H++ L+L +NK+K  I   + LG 
Sbjct: 43  RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLG- 100
Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
           L +L TL+L  + IS +    F +   L +LNLA N
Sbjct: 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 92/259 (35%), Gaps = 79/259 (30%)
Query: 298 LQRISRSTFLKMTSLKTLILSGN-KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
           L RI  + F  +  L+ L LS N +L +++   F  L  L  L L+ CGL  L   +F  
Sbjct: 67  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR- 125
Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI-------LNETV 409
                 L+ L L  N L  LPD T            +++   L  LF+       + E  
Sbjct: 126 --GLAALQYLYLQDNALQALPDDT------------FRDLGNLTHLFLHGNRISSVPERA 171
Query: 410 FHENYTYPDLEELRLSGNPLHVLPTGNXXXXXXXXXXXXXXXXCKIDYLPPNVFNNTRNI 469
           F   ++   L+ L L  N                          ++ ++ P+ F +   +
Sbjct: 172 FRGLHS---LDRLLLHQN--------------------------RVAHVHPHAFRDLGRL 202
Query: 470 TSLNLANNNLSMTSELSFQFXXXXXXXXXXXXXXXXXTHISPTVLRHNRAITSIKLVGNP 529
            +L L  NNLS                            +    L   RA+  ++L  NP
Sbjct: 203 MTLYLFANNLSA---------------------------LPTEALAPLRALQYLRLNDNP 235
Query: 530 WKCDCNIADMWEWATREKG 548
           W CDC    +W W  + +G
Sbjct: 236 WVCDCRARPLWAWLQKFRG 254

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L  C L++L  +       L  LD+SHN L  +
Sbjct: 36  LHLSENLLYTFSLAT-LMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 152 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 188

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L  C L++L  +       L  LD+SHN L  +
Sbjct: 36  LHLSENLLYTFSLAT-LMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 152 KLSLANNDLTELPAGLLN---GLENLDTLLLQENSLYTIP 188

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L  C L++L  +       L  LD+SHN L  +
Sbjct: 37  LHLSENLLYTFSLAT-LMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 92
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 93  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 153 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 189

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 21  TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
           T+N     +  V         +L+LY+ +  ++K+ P  F +LT L  L+L+ N L  + 
Sbjct: 23  TVNCQERSLASVPAGIPTTTQVLHLYINQ--ITKLEPGVFDSLTQLTYLNLAVNQLTALP 80
Query: 81  PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
            GVFD LT L +L L+   L  I    FDNL  L  + L  N         L L N
Sbjct: 81  VGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKN 136

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L  C L++L  +       L  LD+SHN L  +
Sbjct: 36  LHLSENLLYTFSLA-TLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 152 KLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIP 188

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L  C L++L  +       L  LD+SHN L  +
Sbjct: 36  LHLSENLLYTFSLA-TLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 152 KLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIP 188

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257
           C+ KG  S    + ++  R L L  N L +    V    LT+L +LSL + GLS     +
Sbjct: 14  CNSKGLTSVPTGIPSSATR-LELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCS 71
Query: 258 FHRF--TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR-STFLKMTSLKT 314
              F  T L+ LD+S N +I   +  L  LE LEHLD  +SNL+++S  S FL + +L  
Sbjct: 72  QSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130
Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELR 367
           L +S        +G+F  L+ L VL        ++    F EN+      ELR
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVL--------KMAGNSFQENFLPDIFTELR 175

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L  C L++L  +       L  LD+SHN L  +
Sbjct: 36  LHLSENLLYTFSLA-TLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 152 KLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIP 188

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 189 HLDSLDLSNCHLKG--PLSED-AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
            +D + +  C L G  P++    ++      TL    + L        L  L  L R   
Sbjct: 71  EVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRF 130
Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
               L+ +PAN       L  L++  N + +  + L   LE+LE ++ G + L+++ R  
Sbjct: 131 TTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGI 189
Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
           F KM  LK L L+ N+L+++  G+F  LT L  + L+    +C   R++
Sbjct: 190 FGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 238

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L  C L++L  +       L  LD+SHN L  +
Sbjct: 36  LHLSENLLYTFSLA-TLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 152 KLSLANNQLTELPAGLLN---GLENLDTLLLQENSLYTIP 188

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 134/288 (46%), Gaps = 58/288 (20%)
Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           ++ I+P    NLT LN+L+LS N +  I       LTSL+ L  +   +T + P A  NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDLKPLA--NL 172
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
             L+ L++S NK+ S I    VL  L  L++L    + IS++ P  +  N   L  L+L 
Sbjct: 173 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 225
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
            N+L D+    +    L +L  LDL+N  +    PLS       TKL  L L  N +S  
Sbjct: 226 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 274
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
                + PL  L                     T L  L+++ N L D   + +S L++L
Sbjct: 275 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 307
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
            +L + ++N+  IS  +   +T L+ L  S NK+  + S    NLT++
Sbjct: 308 TYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSDVSS--LANLTNI 351

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 37/71 (52%)
Query: 59  FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE 118
            F  LT L KL LS N ++ +  GVFD LT L  L L+   L  +    FD L  LK L 
Sbjct: 47  VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106
Query: 119 LSQNKLKSHID 129
           L  N+LKS  D
Sbjct: 107 LDTNQLKSVPD 117

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
           RL L +  L  LP   F + T L +L +S N +      +   L  L  L +  + LQ +
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN----NCGLTRLN 350
               F K+T LK L L  N+L+++  G+F  LT L  + L+    +C   R++
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 144

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
           S   L++  + LQ +    F K+T L  L LS N++++L  G+F  LT L++L L+   L
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
             L   VF +      L+EL L  N L  +PD
Sbjct: 89  QSLPNGVFDK---LTQLKELALDTNQLKSVPD 117

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           L L N  ++ +  +   R   LQ L ++ N +        S L SLEHLD+ Y+ L  +S
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 303 RSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLELNNCG-LTRLNETVFHENYTY 360
            S F  ++SL  L L GN  +TL E+ LF +LT L +L + N    T++    F    T+
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTF 175
Query: 361 PDLEELRLSGNPLH 374
             LEEL +  + L 
Sbjct: 176 --LEELEIDASDLQ 187

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 97/446 (21%), Positives = 176/446 (39%), Gaps = 85/446 (19%)
Query: 18  GLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
            + +++L+ N I  +  G      +L  L ++   ++ I    F +L +L  LDLS N L
Sbjct: 53  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 77  RIIEPGVFDPLTSLEYL-MLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
             +    F PL+SL+YL ++     T    S F NL +L+TL +   +  S I   +   
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFA 171
Query: 136 NLGKLDTLDLRQSGISN------------------LPDNVFANNTW-----------LRN 166
            L  L+ L+++   + N                  L ++ F    +           LR+
Sbjct: 172 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 231
Query: 167 LNLAENELIDLDVATT------------------------LGQNLVHLDSLDLSNCHLKG 202
            NLA  +   L V                           L + ++ L  ++  +C L G
Sbjct: 232 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 291
Query: 203 ----------PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
                      +SE   V    +R L++    L   DLS     L K+ R+++ N  +  
Sbjct: 292 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVFL 350
Query: 253 LPANTFHRFTCLQELDISHNPLIDAF---TALLSPLESLEHLDMGYSNLQRISRS--TFL 307
           +P +       L+ LD+S N +++ +   +A      SL+ L +  ++L+ + ++    L
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410
Query: 308 KMTSLKTLILSGNKLETL-------ESGLFQNLTHLSVLELNNC------GLTRLNETVF 354
            + +L +L +S N    +       E   F NL+   +  +  C       L   N  + 
Sbjct: 411 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD 470
Query: 355 HENYTYPDLEELRLSGNPLHVLPDST 380
             +   P L+EL +S N L  LPD++
Sbjct: 471 SFSLFLPRLQELYISRNKLKTLPDAS 496

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           L L N  ++ +  +   R   LQ L ++ N +        S L SLEHLD+ Y+ L  +S
Sbjct: 31  LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 303 RSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLELNNCG-LTRLNETVFHENYTY 360
            S F  ++SL  L L GN  +TL E+ LF +LT L +L + N    T++    F    T+
Sbjct: 91  SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTF 149
Query: 361 PDLEELRLSGNPLH 374
             LEEL +  + L 
Sbjct: 150 --LEELEIDASDLQ 161

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 243 LSLRNCGLSRLPAN-TFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
           L L +  LSRL A  T  R T L  L +SHN L    +    P+ +L +LD+  ++L  +
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
               F  + +L+ L+L  N +  ++   F+++  L  L L+   ++R    +  +    P
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 362 DLEELRLSGNPLHVLP 377
            L  L LS N L  LP
Sbjct: 164 KLMLLDLSSNKLKKLP 179

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 133/288 (46%), Gaps = 58/288 (20%)
Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           ++ I+P    NLT LN+L+LS N +  I       LTSL+ L  +   +T + P A  NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDLKPLA--NL 172
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
             L+ L++S NK+ S I    VL  L  L++L    + IS++ P  +  N   L  L+L 
Sbjct: 173 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 225
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
            N+L D+    +    L +L  LDL+N  +    PLS       TKL  L L  N +S  
Sbjct: 226 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 274
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
                + PL  L                     T L  L+++ N L D   + +S L++L
Sbjct: 275 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 307
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
            +L + ++N+  IS  +   +T L+ L    NK+  + S    NLT++
Sbjct: 308 TYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNI 351

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 97/446 (21%), Positives = 176/446 (39%), Gaps = 85/446 (19%)
Query: 18  GLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
            + +++L+ N I  +  G      +L  L ++   ++ I    F +L +L  LDLS N L
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 77  RIIEPGVFDPLTSLEYL-MLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
             +    F PL+SL+YL ++     T    S F NL +L+TL +   +  S I   +   
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFA 145
Query: 136 NLGKLDTLDLRQSGISN------------------LPDNVFANNTW-----------LRN 166
            L  L+ L+++   + N                  L ++ F    +           LR+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 167 LNLAENELIDLDVATT------------------------LGQNLVHLDSLDLSNCHLKG 202
            NLA  +   L V                           L + ++ L  ++  +C L G
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 203 ----------PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
                      +SE   V    +R L++    L   DLS     L K+ R+++ N  +  
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVFL 324
Query: 253 LPANTFHRFTCLQELDISHNPLIDAF---TALLSPLESLEHLDMGYSNLQRISRS--TFL 307
           +P +       L+ LD+S N +++ +   +A      SL+ L +  ++L+ + ++    L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 308 KMTSLKTLILSGNKLETL-------ESGLFQNLTHLSVLELNNC------GLTRLNETVF 354
            + +L +L +S N    +       E   F NL+   +  +  C       L   N  + 
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD 444
Query: 355 HENYTYPDLEELRLSGNPLHVLPDST 380
             +   P L+EL +S N L  LPD++
Sbjct: 445 SFSLFLPRLQELYISRNKLKTLPDAS 470

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 133/288 (46%), Gaps = 58/288 (20%)
Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           ++ I+P    NLT LN+L+LS N +  I       LTSL+ L  +   +T + P A  NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKPLA--NL 172
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
             L+ L++S NK+ S I    VL  L  L++L    + IS++ P  +  N   L  L+L 
Sbjct: 173 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 225
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
            N+L D+    +    L +L  LDL+N  +    PLS       TKL  L L  N +S  
Sbjct: 226 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 274
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
                + PL  L                     T L  L+++ N L D   + +S L++L
Sbjct: 275 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 307
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
            +L + ++N+  IS  +   +T L+ L    NK+  + S    NLT++
Sbjct: 308 TYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNI 351

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L    L++L  +       L  LD+SHN L  +
Sbjct: 36  LHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 152 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 188

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L    L++L  +       L  LD+SHN L  +
Sbjct: 36  LHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 152 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 188

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           L+LS N L    L+  L P T+L +L+L    L++L  +       L  LD+SHN L  +
Sbjct: 36  LHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL-QS 91
Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
              L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL      L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            L L N  LT L   + +      +L+ L L  N L+ +P
Sbjct: 152 KLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIP 188

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 40/78 (51%)
Query: 45  LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
           L++    ++K+ P  F +L  L +L  + N L  I  GVFD LT L  L LN  +L  I 
Sbjct: 38  LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 105 PSAFDNLNHLKTLELSQN 122
             AFDNL  L  + L  N
Sbjct: 98  RGAFDNLKSLTHIYLYNN 115

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 133/288 (46%), Gaps = 59/288 (20%)
Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           ++ I+P    NLT LN+L+LS N +  I       LTSL+ L      +T + P A  NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGN-QVTDLKPLA--NL 171
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
             L+ L++S NK+ S I    VL  L  L++L    + IS++ P  +  N   L  L+L 
Sbjct: 172 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 224
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
            N+L D+    +    L +L  LDL+N  +    PLS       TKL  L L  N +S  
Sbjct: 225 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 273
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
                + PL  L                     T L  L+++ N L D   + +S L++L
Sbjct: 274 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 306
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
            +L + ++N+  IS  +   +T L+ L  S NK+  + S    NLT++
Sbjct: 307 TYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSDVSS--LANLTNI 350

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 133/288 (46%), Gaps = 59/288 (20%)
Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           ++ I+P    NLT LN+L+LS N +  I       LTSL+ L      +T + P A  NL
Sbjct: 123 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTDLKPLA--NL 175
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
             L+ L++S NK+ S I    VL  L  L++L    + IS++ P  +  N   L  L+L 
Sbjct: 176 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 228
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
            N+L D+    +    L +L  LDL+N  +    PLS       TKL  L L  N +S  
Sbjct: 229 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 277
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
                + PL  L                     T L  L+++ N L D   + +S L++L
Sbjct: 278 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 310
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
            +L + ++N+  IS  +   +T L+ L  + NK+  + S    NLT++
Sbjct: 311 TYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSDVSS--LANLTNI 354

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
           P L  IN + N I  +E GAF  A  +  + +    L  +  + F  L +L  L L  N 
Sbjct: 57  PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
           +  +    F  L+S+  L L    +T ++P AFD L+ L TL L  N
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           +S ++ Q F+N+T L  L LS N LR I P  FD L SL  L L+  +++ +   AF++L
Sbjct: 66  ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125
Query: 112 NHLKTLELSQNKL 124
           + L  L +  N L
Sbjct: 126 SALSHLAIGANPL 138

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 59/288 (20%)
Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           ++ I+P    NLT LN+L+LS N +  I       LTSL+ L      +T + P A  NL
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTDLKPLA--NL 176
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
             L+ L++S NK+ S I    VL  L  L++L    + IS++ P  +  N   L  L+L 
Sbjct: 177 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 229
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
            N+L D+    +    L +L  LDL+N  +    PLS       TKL  L L  N +S  
Sbjct: 230 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 278
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
                + PL  L                     T L  L+++ N L D   + +S L++L
Sbjct: 279 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 311
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
            +L + ++N+  IS  +   +T L+ L    NK+  + S    NLT++
Sbjct: 312 TYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNI 355

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 132/288 (45%), Gaps = 59/288 (20%)
Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           ++ I+P    NLT LN+L+LS N +  I       LTSL+ L      +T + P A  NL
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGN-QVTDLKPLA--NL 171
Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANNTWLRNLNLA 170
             L+ L++S NK+ S I    VL  L  L++L    + IS++ P  +  N   L  L+L 
Sbjct: 172 TTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQISDITPLGILTN---LDELSLN 224
Query: 171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAA 228
            N+L D+    +    L +L  LDL+N  +    PLS       TKL  L L  N +S  
Sbjct: 225 GNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS-----GLTKLTELKLGANQIS-- 273
Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
                + PL  L                     T L  L+++ N L D   + +S L++L
Sbjct: 274 ----NISPLAGL---------------------TALTNLELNENQLEDI--SPISNLKNL 306
Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
            +L + ++N+  IS  +   +T L+ L    NK+  + S    NLT++
Sbjct: 307 TYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSS--LANLTNI 350

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	694
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-70
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-53
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-52
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-51
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-49
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-50
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-47
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-46
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-40
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-42
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-40
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-45
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-40
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-45
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-43
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-43
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-45
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-45
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-43
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-42
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-43
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-38
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-38
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-41
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-40
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-35
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-31
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-30
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-20
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-30
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-29
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-27
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-25
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-28
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-27
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-24
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-24
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-22
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-20
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-21
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-17
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-16
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-18
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-18
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-15
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-16
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	8e-10
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	3e-04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	8e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-04

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  278 bits (713), Expect = 8e-85
 Identities = 109/558 (19%), Positives = 196/558 (35%), Gaps = 75/558 (13%)

Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
             L  ++L    I  +    F     L  L +    L  +     +    L  L      
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           +  I+        +LE L L   +++ I          LK L+   N +         + 
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED--MS 174

Query: 136 NLGKLDTLDLRQSG--ISNLPDNVFANN-------------------------TWLRNLN 168
           +L +   L L  +G  I+ +    F +                            L    
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
             + +  D+  A   G   + ++S++L   +    +S + F   + L+ L L+   LS  
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-- 291

Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA-LLSPLES 287
           +L   L  L+ L +L L       L   +   F  L  L I  N          L  LE+
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 288 LEHLDMGYSNLQRI--SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCG 345
           L  LD+ + +++           ++ L++L LS N+  +L++  F+    L +L+L    
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 346 LTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFIL 405
           L   +     +N     L+ L LS + L +  +                 FD L      
Sbjct: 412 LKVKDAQSPFQNLHL--LKVLNLSHSLLDISSEQL---------------FDGL------ 448

Query: 406 NETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP-PQLSRLRSLDLSRCKIDYLPPNVFN 464
                      P L+ L L GN               L RL  L LS C +  +  + F 
Sbjct: 449 -----------PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 465 NTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIK 524
           + + +  ++L++N L+ +S  +   L  +     L+L++N+++ I P++L       +I 
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI----YLNLASNHISIILPSLLPILSQQRTIN 553

Query: 525 LVGNPWKCDCNIADMWEW 542
           L  NP  C C+     EW
Sbjct: 554 LRQNPLDCTCSNIYFLEW 571

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  234 bits (600), Expect = 2e-68
 Identities = 104/488 (21%), Positives = 165/488 (33%), Gaps = 49/488 (10%)

Query: 45  LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
              +   L++I      +   L   + S N L  I+   F  L +L +L L RC + +I 
Sbjct: 17  YNCENLGLNEIPGTLPNSTECL---EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
              F + + L TL L+ N L    +    L     L  L   Q+GIS++      N   L
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAE--TALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR--TLYLSG 222
            +L L  N +  + +    G     L  LD  N  +   LS++   +  +    +L L+G
Sbjct: 132 ESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNG 188

Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL--IDAFTA 280
           N ++  +       + +          L             L            I     
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 281 LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE 340
                 S+E +++       IS +TF   + L+ L L+   L  L SG    L+ L  L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLV 307

Query: 341 LNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLV 400
           L+      L +         P L  L + GN                             
Sbjct: 308 LSANKFENLCQISASNF---PSLTHLSIKGNT---------------------------- 336

Query: 401 ILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPP 460
               L            +L EL LS + +      NL    LS L+SL+LS  +   L  
Sbjct: 337 KRLELGTGCLE---NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 461 NVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAI 520
             F     +  L+LA   L +    S      L  L+ L+LS++ L   S  +     A+
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQS--PFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 521 TSIKLVGN 528
             + L GN
Sbjct: 452 QHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (517), Expect = 7e-57
 Identities = 86/395 (21%), Positives = 145/395 (36%), Gaps = 40/395 (10%)

Query: 12  RNLDNPGLITINLNANPIQPVE--------------------------GAFLVARSLLYL 45
            +L     +++NLN N I  +E                                +SL   
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 46  YMQECTLSKINPQFFTNLTTLN--KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
             ++     I+P  F  L  ++   ++L  +    I    F   + L+ L L   +L+ +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ-SGISNLPDNVFANNT 162
            PS    L+ LK L LS NK ++    +    N   L  L ++  +    L      N  
Sbjct: 294 -PSGLVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
            LR L+L+ +++   D      +NL HL SL+LS       L  +AF    +L  L L+ 
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAF 409

Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL---IDAFT 279
             L   D     + L  L  L+L +  L       F     LQ L++  N         T
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 280 ALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVL 339
             L  L  LE L + + +L  I +  F  +  +  + LS N+L +       +L  +  L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528

Query: 340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
            L +  ++ +  ++            + L  NPL 
Sbjct: 529 NLASNHISIILPSLLPIL---SQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  161 bits (409), Expect = 3e-42
 Identities = 67/389 (17%), Positives = 116/389 (29%), Gaps = 71/389 (18%)

Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
           T +    G++ +P  +  +      L  + N L  +   TT    L++L  LDL+ C + 
Sbjct: 16  TYNCENLGLNEIPGTLPNS---TECLEFSFNVLPTIQ-NTTF-SRLINLTFLDLTRCQIY 70

Query: 202 GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF 261
             + ED F +  +L TL L+ NPL       AL     L  L     G+S +     H  
Sbjct: 71  W-IHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 262 TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK 321
             L+ L +  N                        ++  I          LK L    N 
Sbjct: 129 KTLESLYLGSN------------------------HISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 322 LETLESGLFQNLTHLSVLEL--NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS 379
           +  L      +L   + L L  N   +  +    F         + L   G    ++   
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV----FQSLNFGGTQNLLVIFK 220

Query: 380 TKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP 439
                                           +N T   L            +       
Sbjct: 221 G------------------------------LKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL 499
                + S++L +     +  N F+    +  L+L   +LS            L  L+ L
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG----LSTLKKL 306

Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGN 528
            LS N   ++      +  ++T + + GN
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGN 335

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.6 bits (228), Expect = 2e-19
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 43/213 (20%)

Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
           KT       L  +   L  +   L     +   L  +  T F       +L  L L+   
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLE---FSFNVLPTIQNTTFSR---LINLTFLDLTRCQ 68

Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
           ++ + + T               F                      L+ L L+ NPL  +
Sbjct: 69  IYWIHEDT---------------FQSQ-----------------HRLDTLVLTANPLIFM 96

Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
               L       L+ L   +  I  +     +N + + SL L +N++S          + 
Sbjct: 97  AETALSG--PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE- 153

Query: 493 LLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
             +L+ LD  NN + ++S   +   +  T++ L
Sbjct: 154 --KLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 446 RSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNN 505
           ++ +     ++ +P  + N+T     L  + N L      +F  L   + L  LDL+   
Sbjct: 15  KTYNCENLGLNEIPGTLPNST---ECLEFSFNVLPTIQNTTFSRL---INLTFLDLTRCQ 68

Query: 506 LTHISPTVLRHNRAITSIKLVGNP 529
           +  I     +    + ++ L  NP
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANP 92

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  268 bits (687), Expect = 3e-80
 Identities = 115/532 (21%), Positives = 195/532 (36%), Gaps = 45/532 (8%)

Query: 19  LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
               + +   +  V        ++  L +    L ++    FT  + L  LD+  N +  
Sbjct: 6   HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 79  IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
           +EP +   L  L+ L L    L+ +S   F    +L  L L  N ++   +         
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQK 121

Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
            L TLDL  +G+S+           L+ L L+ N++  L            L  L+LS+ 
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKP--LTKLHRLSLRNCGLSRLPAN 256
            +K   S   F    +L  L+L+   L  +           T +  LSL N  LS     
Sbjct: 182 QIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 257 TFH--RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
           TF   ++T L  LD+S+N L        + L  LE+  + Y+N+Q +   +   + +++ 
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 315 LILSGN---------KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEE 365
           L L  +          L  ++   FQ L  L  L + +  +  +   +F       +L+ 
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL---INLKY 357

Query: 366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI---------LFILNETVFHENYTY 416
           L LS +            S+RT+  + + +     +         +  +    F      
Sbjct: 358 LSLSNSFT----------SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW---L 404

Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
             LE L L  N +    TG      L  +  + LS  K   L  N F    ++  L L  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
             L         F   L  L  LDLSNNN+ +I+  +L     +  + L  N
Sbjct: 464 VALKNVDSSPSPFQP-LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  242 bits (619), Expect = 1e-70
 Identities = 115/550 (20%), Positives = 202/550 (36%), Gaps = 102/550 (18%)

Query: 13  NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
              N  L  + L++N I                        + +P  F  +  L  L L+
Sbjct: 167 IFANSSLKKLELSSNQI-----------------------KEFSPGCFHAIGRLFGLFLN 203

Query: 73  GNPLRIIEP---GVFDPLTSLEYLMLNRCNLTYISPSAFDNLN--HLKTLELSQNKLKSH 127
              L         +    TS+  L L+   L+  S + F  L   +L  L+LS N L   
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLG--- 184
            + +     L +L+   L  + I +L  +       +R LNL  +         +L    
Sbjct: 264 GNDS--FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 185 ----QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVAL---KPL 237
               Q L  L+ L++ +  + G +  + F     L+ L LS +  S   L+         
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYS 296
           + LH L+L    +S++ ++ F     L+ LD+  N +    T      LE++  + + Y+
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLETLES--GLFQNLTHLSVLELNNCGLTRLNETVF 354
              +++R++F  + SL+ L+L    L+ ++S    FQ L +L++L+L+N  +  +N+ + 
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 355 HENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY 414
                   LE L L  N L  L            P                         
Sbjct: 501 EGL---EKLEILDLQHNNLARLWK-------HANPGGPIYFLK----------------- 533

Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
                                      LS L  L+L     D +P  VF +   +  ++L
Sbjct: 534 --------------------------GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567

Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN-RAITSIKLVGNPWKCD 533
             NNL   + L     +  + L+SL+L  N +T +   V     R +T + +  NP+ C 
Sbjct: 568 GLNNL---NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 534 C-NIADMWEW 542
           C +IA    W
Sbjct: 625 CESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  234 bits (600), Expect = 7e-68
 Identities = 102/505 (20%), Positives = 177/505 (35%), Gaps = 62/505 (12%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
           S          L+++     TN+T    L+L+ N LR +    F   + L  L +    +
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
           + + P     L  LK L L  N+L    D          L  L L  + I  + +N F  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED-AFVNATKLRTLY 219
              L  L+L+ N L    + T     L +L  L LSN  ++   SE+      + L+ L 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQ--VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC---LQELDISHNPL-- 274
           LS N +           + +L  L L N  L                ++ L +S++ L  
Sbjct: 178 LSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
               T L     +L  LD+ Y+NL  +   +F  +  L+   L  N ++ L S     L 
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 335 HLSVLELNN---------CGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSM 385
           ++  L L             L ++++  F        LE L +  N +            
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWL---KCLEHLNMEDNDI------------ 341

Query: 386 RTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL--HVLPTGNLLPPQLS 443
             I + ++                        +L+ L LS +      L     +    S
Sbjct: 342 PGIKSNMFTGL--------------------INLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
            L  L+L++ KI  +  + F+   ++  L+L  N +    EL+ Q    L  +  + LS 
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG--QELTGQEWRGLENIFEIYLSY 439

Query: 504 NNLTHISPTVLRHNRAITSIKLVGN 528
           N    ++        ++  + L   
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRV 464

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (539), Expect = 2e-59
 Identities = 87/384 (22%), Positives = 144/384 (37%), Gaps = 25/384 (6%)

Query: 12  RNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
             L    L  ++L+ N +  V   +F     L Y +++   +  +       L  +  L+
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 71  LSGN---------PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
           L  +          L  I+   F  L  LE+L +   ++  I  + F  L +LK L LS 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 122 NKLKSHIDWTLVLGNLG--KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
           +             +L    L  L+L ++ IS +  + F+    L  L+L  NE+     
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV-ALKPLT 238
                  L ++  + LS       L+ ++F     L+ L L    L   D S    +PL 
Sbjct: 423 GQEWR-GLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL--------IDAFTALLSPLESLEH 290
            L  L L N  ++ +  +       L+ LD+ HN L               L  L  L  
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
           L++  +    I    F  +  LK + L  N L TL + +F N   L  L L    +T + 
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 351 ETVFHENYTYPDLEELRLSGNPLH 374
           + VF   +   +L EL +  NP  
Sbjct: 601 KKVFGPAFR--NLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (515), Expect = 4e-56
 Identities = 96/450 (21%), Positives = 164/450 (36%), Gaps = 45/450 (10%)

Query: 88  TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
            S E    +   LT +         ++  L L+ N+L+             +L +LD+  
Sbjct: 4   VSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGF 58

Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
           + IS L   +      L+ LNL  NEL  L  +        +L  L L +  ++  +  +
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQL--SDKTFAFCTNLTELHLMSNSIQK-IKNN 115

Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC--LQ 265
            FV    L TL LS N LS+  L      L  L  L L N  +  L +     F    L+
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI---SRSTFLKMTSLKTLILSGNKL 322
           +L++S N + +        +  L  L +    L           L  TS++ L LS ++L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 323 ETLESGLFQNL--THLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
            T  +  F  L  T+L++L+L+   L  +    F      P LE   L  N +  L   +
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL---PQLEYFFLEYNNIQHLFSHS 291

Query: 381 KQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPP 440
                             L  +  LN      +       +  +S   L  +   +    
Sbjct: 292 ---------------LHGLFNVRYLN---LKRS-----FTKQSISLASLPKIDDFSFQ-- 326

Query: 441 QLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD-VLLELESL 499
            L  L  L++    I  +  N+F    N+  L+L+N+  S+ +  +  F+      L  L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
           +L+ N ++ I          +  + L  N 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  252 bits (645), Expect = 6e-75
 Identities = 115/571 (20%), Positives = 195/571 (34%), Gaps = 86/571 (15%)

Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
             L  ++L+   I+ +E  A+     L  L +    +   +P  F+ LT+L  L      
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYIS-PSAFDNLNHLKTLELSQNKLKSHIDWTL-V 133
           L  +E      L +L+ L +    +     P+ F NL +L  ++LS N +++     L  
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 134 LGNLGK-LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
           L    +   +LD+  + I  + D  F     L  L L  N     ++  T  QNL  L  
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNS-SNIMKTCLQNLAGLHV 233

Query: 193 LDLSNCHLKG-------------------------------PLSEDAFVNATKLRTLYLS 221
             L     K                                      F     +  + L+
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL 281
           G  +   +    +    K   LS+  C L + P         L+ L ++ N    +F   
Sbjct: 294 GVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKGSISFK-- 345

Query: 282 LSPLESLEHLDMGYSNLQRISRSTF--LKMTSLKTLILSGNKLETLESGLFQNLTHLSVL 339
              L SL +LD+  + L      ++  L   SL+ L LS N    + S  F  L  L  L
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHL 404

Query: 340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399
           +  +  L R+ E     +     L  L +S     +  D                 F  L
Sbjct: 405 DFQHSTLKRVTEFSAFLS--LEKLLYLDISYTNTKIDFDGI---------------FLGL 447

Query: 400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP 459
                              L  L+++GN        N+     + L  LDLS+C+++ + 
Sbjct: 448 -----------------TSLNTLKMAGNSFKDNTLSNVF-ANTTNLTFLDLSKCQLEQIS 489

Query: 460 PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRA 519
             VF+    +  LN+++NNL     L     + L  L +LD S N +      +    ++
Sbjct: 490 WGVFDTLHRLQLLNMSHNNL---LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 520 ITSIKLVGNPWKCDCNIADMWEWATREKGDI 550
           +    L  N   C C      +W   +K  +
Sbjct: 547 LAFFNLTNNSVACICEHQKFLQWVKEQKQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  202 bits (516), Expect = 9e-57
 Identities = 88/477 (18%), Positives = 158/477 (33%), Gaps = 45/477 (9%)

Query: 69  LDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHI 128
                  L  +   +    +S + + L+   L  +   +F N + L+ L+LS+ ++   I
Sbjct: 16  YQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-ETI 71

Query: 129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLV 188
           +       L  L  L L  + I +     F+  T L NL   E +L  L+        L+
Sbjct: 72  E-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI--GQLI 128

Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSL 245
            L  L++++  +        F N T L  + LS N +      DL    +       L +
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLI-DAFTALLSPLESLEHLDM------GYSNL 298
               +  +    F     L EL +  N    +     L  L  L    +         NL
Sbjct: 189 SLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 299 QRISRSTFLKMTSLKTLIL--SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
           +    S    +  +       +     + +   F  L ++S + L    +  L +   H 
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307

Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN--ETVFHENY 414
                  + L +    L   P                 +  FL  L +     ++  +  
Sbjct: 308 K-----WQSLSIIRCQLKQFPTL---------------DLPFLKSLTLTMNKGSISFKKV 347

Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
             P L  L LS N L      +      + LR LDLS      +    F     +  L+ 
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDF 406

Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWK 531
            ++ L   +E S      L +L  LD+S  N       +     ++ ++K+ GN +K
Sbjct: 407 QHSTLKRVTEFS--AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (393), Expect = 3e-40
 Identities = 81/388 (20%), Positives = 149/388 (38%), Gaps = 45/388 (11%)

Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
           T       +S +PD++ ++    +N++L+ N L  L  + +   N   L  LDLS C ++
Sbjct: 15  TYQCMDQKLSKVPDDIPSS---TKNIDLSFNPLKILK-SYSFS-NFSELQWLDLSRCEIE 69

Query: 202 GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF 261
             + + A+     L  L L+GNP+ +     +   LT L  L      L+ L +    + 
Sbjct: 70  T-IEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQL 127

Query: 262 TCLQELDISHNPLIDA-FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK----TLI 316
             L++L+++HN +      A  S L +L H+D+ Y+ +Q I+ +    +        +L 
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
           +S N ++ ++   FQ +  L  L L     +        +N     L   RL        
Sbjct: 188 MSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLA--GLHVHRLILGEFKDE 244

Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVIL---------FILNETVFHENYTYPDLEELRLSGN 427
            +             I +    + I          F  +   FH      ++  + L+G 
Sbjct: 245 RNLE------IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH---CLANVSAMSLAGV 295

Query: 428 PLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSF 487
            +  L       P+  + +SL + RC++   P     +   + SL L  N  S++ +   
Sbjct: 296 SIKYLEDV----PKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSISFKKVA 348

Query: 488 QFLDVLLELESLDLSNNNLTHISPTVLR 515
                L  L  LDLS N L+        
Sbjct: 349 -----LPSLSYLDLSRNALSFSGCCSYS 371

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 8e-18
 Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 42/216 (19%)

Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
            T      KL  +   +  +  ++    L+   L  L    F     + +L+ L LS   
Sbjct: 14  ITYQCMDQKLSKVPDDIPSSTKNID---LSFNPLKILKSYSFS---NFSELQWLDLSRCE 67

Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
           +  + D                 +  L                   L  L L+GNP+   
Sbjct: 68  IETIEDKA---------------WHGL-----------------HHLSNLILTGNPIQSF 95

Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
             G+     L+ L +L     K+  L          +  LN+A+N +      +  +   
Sbjct: 96  SPGSFSG--LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA--YFSN 151

Query: 493 LLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
           L  L  +DLS N +  I+   L+  R    + L  +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
           +      K+  +P ++ ++T    +++L+ N L +    SF       EL+ LDLS   +
Sbjct: 15  TYQCMDQKLSKVPDDIPSST---KNIDLSFNPLKILKSYSFSNF---SELQWLDLSRCEI 68

Query: 507 THISPTVLRHNRAITSIKLVGNP 529
             I          ++++ L GNP
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNP 91

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  250 bits (640), Expect = 2e-72
 Identities = 116/581 (19%), Positives = 210/581 (36%), Gaps = 72/581 (12%)

Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQE-CTLSKINPQFFTNLTTLNKLDLSGN 74
                + L+ N I+ V   +F     L  L +    T   I+ + F NL  L  LDL  +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLT--YISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
            +  + P  F  L  L  L L  C L+   +    F NL  L  L+LS+N+++S +    
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHP 142

Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFAN--NTWLRNLNLAENELIDLDVATTLGQ----N 186
             G L  L ++D   + I  + ++         L   +LA N L                
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 187 LVHLDSLDLSNCHLKGP-----------LSEDAFVNATKLRTLYLSGNPLSAADLSVALK 235
            + L+ LD+S                      + + A  +       + +   D +    
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN-TFA 261

Query: 236 PLTK--LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
            L +  +  L L +  +  L +  F     L+ L++++N +          L++L+ L++
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353
            Y+ L  +  S F  +  +  + L  N +  ++   F+ L  L  L+L +  LT ++   
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI- 380

Query: 354 FHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN 413
                  P + ++ LSGN L  LP              +  N   L    + N  + +  
Sbjct: 381 -------PSIPDIFLSGNKLVTLPKIN-----------LTANLIHLSENRLENLDILYFL 422

Query: 414 YTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY-----LPPNVFNNTRN 468
              P L+ L L+ N       G+  P +   L  L L    +       L  +VF    +
Sbjct: 423 LRVPHLQILILNQNRFSSCS-GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 469 ITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV---------LRHNR- 518
           +  L L +N L+      F  L     L  L L++N LT +S            +  N+ 
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLT---ALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538

Query: 519 ---------AITSIKLVGNPWKCDCNIADMWEWATREKGDI 550
                    +++ + +  N + C+C ++    W       I
Sbjct: 539 LAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTI 579

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  241 bits (616), Expect = 2e-71
 Identities = 101/528 (19%), Positives = 178/528 (33%), Gaps = 56/528 (10%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
            ++  L +    ++ I          L  L L  + +  IE   F  L SLE+L L+  +
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL-RQSGISNLPDNVF 158
           L+ +S S F  L+ LK L L  N  ++ +  T +  NL  L TL +      S +    F
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 159 ANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTL 218
           A  T L  L +    L +    +   +++  +  L L        L E      + +R L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSL--KSIRDIHHLTLHLSESAF-LLEIFADILSSVRYL 201

Query: 219 YLSGNPLSAADLSV--ALKPLTKLHRLSLRNCGLSRLPANT----FHRFTCLQELDISHN 272
            L    L+    S     +  + + +L+ R   L+    N           L E++    
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 273 PL----------IDAFTALLS-PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK 321
            L           D  + L      ++  L +    L     + +  +  +K + +  +K
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 322 LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK 381
           +  +     Q+L  L  L+L+   +             +P L+ L LS N L  +  + +
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 382 QYSMRTIPTQIWKNFDFLVILFILN------ETVFHENYTYPDLEELRLSGNPLHVLPTG 435
                            L  L  L+        +         +  L LS   + V+ T 
Sbjct: 382 I-------------LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC 428

Query: 436 NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495
                    L  LD+S   +D            +  L ++ N L    + S         
Sbjct: 429 I-----PQTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLKTLPDASL-----FPV 474

Query: 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIAD-MWEW 542
           L  + +S N L  +   +     ++  I L  NPW C C   D +  W
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  175 bits (446), Expect = 1e-47
 Identities = 75/398 (18%), Positives = 149/398 (37%), Gaps = 20/398 (5%)

Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
             D R    +++P  + A    +++L+L+ N++  +       +   +L  L L +  + 
Sbjct: 9   VCDGRSRSFTSIPSGLTAA---MKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRIN 63

Query: 202 GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN-TFHR 260
             +  DAF +   L  L LS N LS+   S    PL+ L  L+L       L     F  
Sbjct: 64  T-IEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 261 FTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319
            T LQ L I +            + L SL  L++   +L+     +   +  +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS 379
           ++   L       L+ +  LEL +  L R   +    +     +++L   G+ L     +
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 380 TKQYSMRTIPTQIWKNFDFLVILFILN-----ETVFHE--NYTYPDLEELRLSGNPLHVL 432
                +R I       FD   +  + +       V  E        +  L +    L   
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
            +       L +++ + +   K+  +P +   + +++  L+L+ N +      +      
Sbjct: 302 LSTVYS--LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 493 LLELESLDLSNNNLTHISPT--VLRHNRAITSIKLVGN 528
              L++L LS N+L  +  T  +L   + +TS+ +  N
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  172 bits (439), Expect = 1e-46
 Identities = 88/468 (18%), Positives = 158/468 (33%), Gaps = 90/468 (19%)

Query: 19  LITINL-NANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
           L T+ + N      +    F    SL  L ++  +L     Q   ++  ++ L L  +  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 77  RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
             +     D L+S+ YL L   NL     S          ++    +             
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR------------- 231

Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
                         S L D  F     L    L  +E+   D           L+ L   
Sbjct: 232 -------------GSVLTDESFNELLKLLRYILELSEVEFDD---------CTLNGLGDF 269

Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
           N      +SE   V    +R L++    L   DLS     L K+ R+++ N  +  +P +
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 257 TFHRFTCLQELDISHNPLIDAF---TALLSPLESLEHLDMGYSNLQRISR--STFLKMTS 311
                  L+ LD+S N +++ +   +A      SL+ L +  ++L+ + +     L + +
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
           L +L +S N    +     Q    +  L L++ G+  +   +         LE L +S N
Sbjct: 389 LTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNN 441

Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
            L                                           P L+EL +S N L  
Sbjct: 442 NLDSFSLFL------------------------------------PRLQELYISRNKLKT 465

Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
           LP  +L P     L  + +SR ++  +P  +F+   ++  + L  N  
Sbjct: 466 LPDASLFP----VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (295), Expect = 8e-28
 Identities = 52/272 (19%), Positives = 88/272 (32%), Gaps = 40/272 (14%)

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
                 R+   + +P+        ++ LD+S N +       L    +L+ L +  S + 
Sbjct: 7   SGVCDGRSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
            I    F  + SL+ L LS N L +L S  F  L+ L  L L       L  T    N T
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 360 YPDLEELRLSG-NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPD 418
             +L+ LR+        +                   F  L                   
Sbjct: 124 --NLQTLRIGNVETFSEIRRID---------------FAGL-----------------TS 149

Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
           L EL +    L    + +L    +  +  L L   +  +L     +   ++  L L + N
Sbjct: 150 LNELEIKALSLRNYQSQSLKS--IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
           L+          +V   ++ L    + LT  S
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 39/233 (16%)

Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG 370
           +            ++ SGL   +  L    L+   +T +            +L+ L L  
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTAAMKSLD---LSFNKITYIGHGDLRA---CANLQVLILKS 59

Query: 371 NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN----------ETVFHENYTYPDLE 420
           + ++ +                   F  L  L  L+           + F        L+
Sbjct: 60  SRINTIEGDA---------------FYSLGSLEHLDLSDNHLSSLSSSWFGPL---SSLK 101

Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC-KIDYLPPNVFNNTRNITSLNLANNNL 479
            L L GNP   L   +L  P L+ L++L +        +    F    ++  L +   +L
Sbjct: 102 YLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC 532
                   Q L  + ++  L L  +    +         ++  ++L       
Sbjct: 161 ---RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
                 D        +P  +        SL+L+ N ++       +       L+ L L 
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTAAM---KSLDLSFNKITYIGHGDLRA---CANLQVLILK 58

Query: 503 NNNLTHISPTVLRHNRAITSIKLVGN 528
           ++ +  I         ++  + L  N
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDN 84

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  241 bits (617), Expect = 2e-71
 Identities = 116/545 (21%), Positives = 205/545 (37%), Gaps = 48/545 (8%)

Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
                ++L+ NP++ +   +F     L  L +  C +  I    + +L+ L+ L L+GNP
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           ++ +  G F  L+SL+ L+    NL  +      +L  LK L ++ N ++S         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFS 146

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRN----LNLAENELIDLDVATTLGQNLVHLD 191
           NL  L+ LDL  + I ++          +      L+L+ N +  +         L    
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK-- 204

Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYL------SGNPLSAADLSVALKPLTKLHRLSL 245
            L L N      + +        L    L      +   L   D S AL+ L  L     
Sbjct: 205 -LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS-ALEGLCNLTIEEF 262

Query: 246 RNCGLSRLPANTFHRFTCLQEL---DISHNPL--IDAFTALLSPLESLEHLDMGYSNLQR 300
           R   L     +    F CL  +    +    +  +  F+      + LE ++  +     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKFGQFP- 320

Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY 360
                 LK+ SLK L  + NK     S    +L  L  L+L+  GL+         ++  
Sbjct: 321 -----TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGT 372

Query: 361 PDLEELRLSGNPLHVLPDSTKQY-SMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
             L+ L LS N +  +  +      +  +      +F    +  +   +VF       +L
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHL------DFQHSNLKQMSEFSVFLSL---RNL 423

Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKI-DYLPPNVFNNTRNITSLNLANNN 478
             L +S     V   G      LS L  L ++     +   P++F   RN+T L+L+   
Sbjct: 424 IYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IA 537
           L    +LS    + L  L+ L++++N L  +   +     ++  I L  NPW C C  I 
Sbjct: 482 L---EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538

Query: 538 DMWEW 542
            +  W
Sbjct: 539 YLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (399), Expect = 4e-41
 Identities = 61/343 (17%), Positives = 117/343 (34%), Gaps = 25/343 (7%)

Query: 14  LDNPGLITINLNANPIQP--VEGAFLVARSL------LYLYMQECTLSKINPQFFTNLTT 65
                L  + L  N      ++        L      L  +  E  L K +      L  
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 66  LNKLDLSGNPLRIIE---PGVFDPLTSLEYLMLNRCNLTYISPSAFD-NLNHLKTLELSQ 121
           L   +     L         +F+ LT++    L    +  +   +++    HL+ +    
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
            +  +          L  L  L    +   N       +   L  L+L+ N L      +
Sbjct: 317 GQFPTL--------KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
                   L  LDLS   +        F+   +L  L    + L           L  L 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQR 300
            L + +          F+  + L+ L ++ N   + F   + + L +L  LD+    L++
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
           +S + F  ++SL+ L ++ N+L+++  G+F  LT L  + L+ 
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (347), Expect = 2e-34
 Identities = 58/313 (18%), Positives = 104/313 (33%), Gaps = 38/313 (12%)

Query: 13  NLDNPGLITINLNANPIQPVE--GAFLVARSLLYLYMQECTLSKINP-QFFTNLTTLNKL 69
            L N  +    L        +    F    ++    +   T+ ++    +      L  +
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 70  DLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHID 129
           +                L SL+ L             +  +L  L+ L+LS+N L     
Sbjct: 313 NCKFGQFP------TLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGC 364

Query: 130 WTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVH 189
            +        L  LDL  +G+  +  N F     L +L+   + L  +   +    +L +
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRN 422

Query: 190 LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCG 249
           L  LD+S+ H +       F   + L  L ++GN      L      L  L  L L  C 
Sbjct: 423 LIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 250 LSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
           L +L    F+  + LQ L+++ N                         L+ +    F ++
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASN------------------------QLKSVPDGIFDRL 517

Query: 310 TSLKTLILSGNKL 322
           TSL+ + L  N  
Sbjct: 518 TSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 45/213 (21%), Positives = 71/213 (33%), Gaps = 42/213 (19%)

Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
            T          +   L  +  +L    L+   L  L    F     +P+L+ L LS   
Sbjct: 10  ITYQCMELNFYKIPDNLPFSTKNLD---LSFNPLRHLGSYSFFS---FPELQVLDLSRCE 63

Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
           +  + D                 +  L                   L  L L+GNP+  L
Sbjct: 64  IQTIEDGA---------------YQSL-----------------SHLSTLILTGNPIQSL 91

Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
             G      LS L+ L      +  L      + + +  LN+A+N +   S    ++   
Sbjct: 92  ALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI--QSFKLPEYFSN 147

Query: 493 LLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
           L  LE LDLS+N +  I  T LR    +  + L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
           +          +P N+  +T    +L+L+ N L      SF       EL+ LDLS   +
Sbjct: 11  TYQCMELNFYKIPDNLPFST---KNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEI 64

Query: 507 THISPTVLRHNRAITSIKLVGNP 529
             I     +    ++++ L GNP
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNP 87

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  231 bits (592), Expect = 2e-67
 Identities = 119/547 (21%), Positives = 211/547 (38%), Gaps = 52/547 (9%)

Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
           P L  ++L+   IQ +E GA+     L  L +    +  +    F+ L++L KL      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYIS-PSAFDNLNHLKTLELSQNKLKSHIDWTL-V 133
           L  +E      L +L+ L +    +     P  F NL +L+ L+LS NK++S     L V
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 134 LGNLGKLD-TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
           L  +  L+ +LDL  + ++ +    F     L  L L  N    L+V  T  Q L  L+ 
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNN-FDSLNVMKTCIQGLAGLEV 229

Query: 193 LDLSNCHLKG-----PLSEDAFVNATKLR--TLYLSGNPLSAADLSVALKPLTKLHRLSL 245
             L     +         + A      L      L+       D+      LT +   SL
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
            +  + R+   ++      Q L++ +       T  L  L+ L       ++ +  +  +
Sbjct: 290 VSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFS 342

Query: 306 FLKMTSLKTLILSGNKLETLE--SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
            + + SL+ L LS N L      S      T L  L+L+  G+  ++            L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG----LEQL 398

Query: 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI-------LNETVFHENYTY 416
           E L    + L  +               ++ +   L+ L I           +F+     
Sbjct: 399 EHLDFQHSNLKQM-----------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--- 444

Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
             LE L+++GN        ++   +L  L  LDLS+C+++ L P  FN+  ++  LN+++
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN-RAITSIKLVGNPWKCDCN 535
           NN        ++    L  L+ LD S N++       L+H   ++  + L  N + C C 
Sbjct: 504 NNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

Query: 536 IADMWEW 542
                +W
Sbjct: 561 HQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  213 bits (545), Expect = 8e-61
 Identities = 104/504 (20%), Positives = 175/504 (34%), Gaps = 42/504 (8%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
            S   L +    L  +    F +   L  LDLS   ++ IE G +  L+ L  L+L    
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP-DNVF 158
           +  ++  AF  L+ L+ L   +  L S  ++   +G+L  L  L++  + I +      F
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 159 ANNTWLRNLNLAENELIDLDVAT--TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR 216
           +N T L +L+L+ N++  +       L Q  +   SLDLS   +   +   AF    +L 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKE-IRLH 203

Query: 217 TLYLSGNPLSAADLSVALKPLTKLHRLSL---RNCGLSRLPANTFHRFTCLQELDISHNP 273
            L L  N  S   +   ++ L  L    L          L          L  L I    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 274 L------IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES 327
           L      +D    L + L ++    +    ++R+   ++      + L L   K     +
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQFPT 321

Query: 328 GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRT 387
              ++L  L+             +         P LE L LS N L          S + 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVD--------LPSLEFLDLSRNGL----------SFKG 363

Query: 388 IPTQIWKNFDFLVILFILN---ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSR 444
             +Q       L  L +      T+         LE L    + L  +   ++    L  
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRN 422

Query: 445 LRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNN 504
           L  LD+S          +FN   ++  L +A N+              L  L  LDLS  
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQC 480

Query: 505 NLTHISPTVLRHNRAITSIKLVGN 528
            L  +SPT      ++  + +  N
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHN 504

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  152 bits (386), Expect = 3e-39
 Identities = 66/336 (19%), Positives = 120/336 (35%), Gaps = 18/336 (5%)

Query: 13  NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
            ++   L  ++   + I  +        ++    +   T+ ++    F+       L+L 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCL---TNVSSFSLVSVTIERVKD--FSYNFGWQHLELV 312

Query: 73  GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
                         L  L +      +    +  +  +L  L+ L+LS+N L      + 
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFT-----SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
                  L  LDL  +G+  +  N F     L +L+   + L  +   +    +L +L  
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRNLIY 425

Query: 193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
           LD+S+ H +       F   + L  L ++GN      L      L  L  L L  C L +
Sbjct: 426 LDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM-TS 311
           L    F+  + LQ L++SHN      T     L SL+ LD   +++    +       +S
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 544

Query: 312 LKTLILSGNKLE-TLESGLFQ---NLTHLSVLELNN 343
           L  L L+ N    T E   F          ++E+  
Sbjct: 545 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.0 bits (242), Expect = 4e-21
 Identities = 52/224 (23%), Positives = 80/224 (35%), Gaps = 40/224 (17%)

Query: 309 MTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
             S K L LS N L  L S  F +   L VL+L+ C +  + +  +        L  L L
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLIL 83

Query: 369 SGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNP 428
           +GNP+  L                   F  L                   L++L      
Sbjct: 84  TGNPIQSLALGA---------------FSGL-----------------SSLQKLVAVETN 111

Query: 429 LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSF 487
           L  L    +    L  L+ L+++   I     P  F+N  N+  L+L++N +        
Sbjct: 112 LASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 488 QFLDVL-LELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPW 530
           + L  + L   SLDLS N +  I P   +  R +  + L  N  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFD 212

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
           +          +P N+  +T+N   L+L+ N L      SF       EL+ LDLS   +
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKN---LDLSFNPLRHLGSYSFFS---FPELQVLDLSRCEI 64

Query: 507 THISPTVLRHNRAITSIKLVGNP 529
             I     +    ++++ L GNP
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNP 87

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  205 bits (523), Expect = 7e-59
 Identities = 93/379 (24%), Positives = 143/379 (37%), Gaps = 68/379 (17%)

Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
              +     T    L   DL  N ++ +    F     LE L LN   ++ + P AF+NL
Sbjct: 23  FVAVPEGIPTETRLL---DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79

Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAE 171
            +L+TL L  N+LK  I    V   L  L  LD+ ++ I  L D +F +   L++L + +
Sbjct: 80  FNLRTLGLRSNRLKL-IP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 172 NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLS 231
           N+L+ +                           S  AF     L  L L    L++   +
Sbjct: 138 NDLVYI---------------------------SHRAFSGLNSLEQLTLEKCNLTSIP-T 169

Query: 232 VALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291
            AL  L  L  L LR+  ++ +   +F R   L+ L+ISH P +D  T       +L  L
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229

Query: 292 DMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE 351
            + + NL  +       +  L+ L LS N + T+E  +   L  L  ++L    L  +  
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289

Query: 352 TVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFH 411
             F        L  L +SGN L  L +S                F  +            
Sbjct: 290 YAFRGL---NYLRVLNVSGNQLTTLEESV---------------FHSV------------ 319

Query: 412 ENYTYPDLEELRLSGNPLH 430
                 +LE L L  NPL 
Sbjct: 320 -----GNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  204 bits (521), Expect = 1e-58
 Identities = 81/354 (22%), Positives = 142/354 (40%), Gaps = 42/354 (11%)

Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
            LDL    +K  L++D F +   L  L L+ N +SA +   A   L  L  L LR+  L 
Sbjct: 36  LLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLK 93

Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
            +P   F   + L +LDIS N ++     +   L +L+ L++G ++L  IS   F  + S
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
           L+ L L    L ++ +    +L  L VL L +  +  + +  F        L+ L +S  
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL---YRLKVLEISHW 210

Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
           P            + T+                             +L  L ++   L  
Sbjct: 211 PY-----------LDTMTPNCLYG---------------------LNLTSLSITHCNLTA 238

Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD 491
           +P   +    L  LR L+LS   I  +  ++ +    +  + L    L++    +F+ L+
Sbjct: 239 VPYLAVRH--LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 492 VLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATR 545
               L  L++S N LT +  +V      + ++ L  NP  CDC +  ++    R
Sbjct: 297 ---YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWR 347

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  204 bits (520), Expect = 2e-58
 Identities = 82/361 (22%), Positives = 134/361 (37%), Gaps = 60/361 (16%)

Query: 16  NPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
                 ++L  N I+ + +  F     L  L + E  +S + P  F NL  L  L L  N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
            L++I  GVF  L++L  L ++   +  +    F +L +LK+LE+  N            
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND----------- 139

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
                          +  +    F+    L  L L +  L  +                 
Sbjct: 140 ---------------LVYISHRAFSGLNSLEQLTLEKCNLTSIP---------------- 168

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL-RNCGLSRL 253
                       +A  +   L  L L    ++A     + K L +L  L +     L  +
Sbjct: 169 -----------TEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLKVLEISHWPYLDTM 216

Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313
             N  +    L  L I+H  L       +  L  L  L++ Y+ +  I  S   ++  L+
Sbjct: 217 TPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275

Query: 314 TLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
            + L G +L  +E   F+ L +L VL ++   LT L E+VFH      +LE L L  NPL
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV---GNLETLILDSNPL 332

Query: 374 H 374
            
Sbjct: 333 A 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
                +         +P G  +P      R LDL + +I  L  + F +  ++  L L  
Sbjct: 11  AQDRAVLCHRKRFVAVPEG--IPT---ETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
           N +S     +F  L     L +L L +N L  I   V      +T + +  N
Sbjct: 66  NIVSAVEPGAFNNLF---NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  188 bits (480), Expect = 5e-53
 Identities = 87/493 (17%), Positives = 151/493 (30%), Gaps = 116/493 (23%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL-TYISPSAFDNLNHLKTLELSQN 122
             +N +DLS N +  +    F  L  L++L + +      I  + F  L+ L  L+L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 123 KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATT 182
           +                             L    F     L  L L +  L    ++  
Sbjct: 90  QFLQ--------------------------LETGAFNGLANLEVLTLTQCNLDGAVLSGN 123

Query: 183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR 242
             + L  L+ L L + ++K       F+N  +   L L+ N + +               
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS--------------- 168

Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
                     +       F       +               L S+   DM    L    
Sbjct: 169 ----------ICEEDLLNFQGKHFTLLR--------------LSSITLQDMNEYWLGWEK 204

Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY---- 358
                K TS+ TL LSGN  +   +  F +    + ++      +    + F        
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 359 --------TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVF 410
                       ++   LS + +  L  S                F              
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSV---------------FSHF----------- 298

Query: 411 HENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT 470
                  DLE+L L+ N ++ +         L+ L  L+LS+  +  +   +F N   + 
Sbjct: 299 ------TDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350

Query: 471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPW 530
            L+L+ N++    + SF  L     L+ L L  N L  +   +     ++  I L  NPW
Sbjct: 351 VLDLSYNHIRALGDQSFLGLP---NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

Query: 531 KCDCN-IADMWEW 542
            C C  I  +  W
Sbjct: 408 DCSCPRIDYLSRW 420

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  184 bits (470), Expect = 9e-52
 Identities = 96/410 (23%), Positives = 154/410 (37%), Gaps = 58/410 (14%)

Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL-RIIEPGVFDPLTSLEYLMLNRCNLTY 102
           Y+ +   +++++N   F+ L  L  L +       +I    F  L+SL  L L+      
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL-PDNVFANN 161
           +   AF+ L +L+ L L+Q  L   +        L  L+ L LR + I  + P + F N 
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK-------GPLSEDAFVNATK 214
                L+L  N++  +     L     H   L LS+  L+       G          T 
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213

Query: 215 LRTLYLSGNPLSA--ADLSVALKPLTKLHRLSLRNCG----------LSRLPANTFHRFT 262
           + TL LSGN      A         TK+  L L N                   TF    
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273

Query: 263 C--LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
              ++  D+S + +     ++ S    LE L +  + + +I  + F  +T L  L LS N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
            L +++S +F+NL  L VL+L+   +  L +  F      P+L+EL L  N L  +PD  
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL---PNLKELALDTNQLKSVPDGI 390

Query: 381 KQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
                          FD L                   L+++ L  NP  
Sbjct: 391 ---------------FDRL-----------------TSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 27/162 (16%)

Query: 12  RNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
           + L+  G+ T +L+ + I  +    F     L  L + +  ++KI+   F  LT L KL+
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 71  LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
           LS N L  I+  +F+ L  LE L L+  ++  +   +F  L +LK L L  N+LKS    
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS---- 385

Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
                                 +PD +F   T L+ + L  N
Sbjct: 386 ----------------------VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 438 LPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE 497
           +P   + +  +DLS   I  L    F+  +++  L +      +   +       L  L 
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLI 82

Query: 498 SLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
            L L  N    +          +  + L   
Sbjct: 83  ILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (490), Expect = 5e-52
 Identities = 80/547 (14%), Positives = 171/547 (31%), Gaps = 87/547 (15%)

Query: 12  RNLDNPGLITINLNANP-IQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
           + L+   L+   +N NP ++P++    ++     +      ++ I  +    LT L  + 
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIY 454

Query: 71  LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
            + +P       V       E    +          ++ NL  L  +EL      + +  
Sbjct: 455 FANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP- 508

Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHL 190
              L +L +L +L++  +   +             + +                     +
Sbjct: 509 -DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-----------------TGPKI 550

Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
               +   +L+   +  +     KL  L    N +   +   A     KL  L L    +
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQI 607

Query: 251 SRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLESLEHLDMGYSNLQRISRSTF--- 306
             +P +       ++ L  SHN L           +  +  +D  Y+ +    R+     
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 307 --LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY---- 360
              K  +  T+ LS N+++   + LF   + +S + L+N  +T + E             
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
             L  + L  N L  L D  +  ++                               P L 
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTL-------------------------------PYLS 756

Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY------LPPNVFNNTRNITSLNL 474
            + +S N     PT    P   S+L++  +   +           P       ++  L +
Sbjct: 757 NMDVSYNCFSSFPTQ---PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWK--C 532
            +N++    E       +  +L  LD+++N    I  T +          L+ +  +   
Sbjct: 814 GSNDIRKVDE------KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

Query: 533 DCNIADM 539
            C+   +
Sbjct: 868 GCDALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  189 bits (482), Expect = 7e-51
 Identities = 87/484 (17%), Positives = 151/484 (31%), Gaps = 67/484 (13%)

Query: 50  CTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFD 109
                       N   +  L L+G   +   P     LT L+ L     + T       D
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
                   E  +++++ H    + L    +L+  DL Q  I+  P+           ++L
Sbjct: 369 EELTPDMSEERKHRIRMHYK-KMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISL 425

Query: 170 AENELIDLDVATTLG----QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
            + ++ +L    T      Q L  L  +  +N              A             
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQ 479

Query: 226 SAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID--------- 276
              +  ++   L  L  + L NC       +  +    LQ L+I+ N  I          
Sbjct: 480 Y-ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 277 AFTALLSPLESLEHLDMGYSNLQRISRSTFL-KMTSLKTLILSGNKLETLESGLFQNLTH 335
                      ++   MGY+NL+    S  L KM  L  L    NK+  LE+  F     
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVK 596

Query: 336 LSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKN 395
           L+ L+L+   +  + E           +E L  S N L  +P+     S+          
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFT---DQVEGLGFSHNKLKYIPNIFNAKSVYV-------- 645

Query: 396 FDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPP---QLSRLRSLDLSR 452
                                  +  +  S N +              +     ++ LS 
Sbjct: 646 -----------------------MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV----LLELESLDLSNNNLTH 508
            +I   P  +F     I+++ L+NN ++   E S +  D        L ++DL  N LT 
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 509 ISPT 512
           +S  
Sbjct: 743 LSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  140 bits (355), Expect = 7e-35
 Identities = 53/434 (12%), Positives = 113/434 (26%), Gaps = 55/434 (12%)

Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNT 162
                 +N  H      ++          + L N G++  L L   G      +     T
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT 347

Query: 163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
            L+ L+   +           G   +  D  +     ++    +       +L    L  
Sbjct: 348 ELKVLSFGTHSETVS--GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 223 NPLSAADLSVALKPLTKLH----RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAF 278
           + ++       +K  +++     ++      ++ +      R T LQ +  +++P     
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPF---- 460

Query: 279 TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSV 338
               +     E  +  Y+        ++  +  L  + L      T       +L  L  
Sbjct: 461 -TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 339 LELNNCGLTRLNETVFHENYTYPD------LEELRLSGNPLHVLPDSTKQYSMRTIPTQI 392
           L +         +          D      ++   +  N L   P S     M       
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV------ 573

Query: 393 WKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR 452
                                     L  L    N +  L           +L  L L  
Sbjct: 574 -------------------------KLGLLDCVHNKVRHLEAFG----TNVKLTDLKLDY 604

Query: 453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPT 512
            +I+ +P +    T  +  L  ++N L      +      +  + S+D S N +      
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKL--KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 513 VLRHNRAITSIKLV 526
           +         I   
Sbjct: 663 ISCSMDDYKGINAS 676

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (282), Expect = 6e-26
 Identities = 38/357 (10%), Positives = 95/357 (26%), Gaps = 62/357 (17%)

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
           N   +  L L+    KG +  DA    T+L+ L    +  + +      + LT       
Sbjct: 321 NNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR-- 303
           ++                L   D+  + +       + P++    + +  + +  ++   
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 304 ----STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
                   ++T L+ +  + +        +            +        E  +     
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNL-- 490

Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
             DL ++ L   P            M  +P  ++                       P+L
Sbjct: 491 -KDLTDVELYNCPN-----------MTQLPDFLYD---------------------LPEL 517

Query: 420 EELRLSGNPLHVLPTG----NLLPP---QLSRLRSLDLSRCKIDYLPPNV-FNNTRNITS 471
           + L ++ N              L        +++   +    ++  P +        +  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 472 LNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
           L+  +N +              ++L  L L  N +  I          +  +    N
Sbjct: 578 LDCVHNKVRHLEAFGT-----NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  181 bits (462), Expect = 4e-51
 Identities = 73/383 (19%), Positives = 146/383 (38%), Gaps = 36/383 (9%)

Query: 7   VYNDRRNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTT 65
           VY    ++       +    + ++ +        R +  L + +  + +I+   F    T
Sbjct: 35  VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 94

Query: 66  LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
           + KL +  N +R + P VF  +  L  L+L R +L+ +    F N   L TL +S N L 
Sbjct: 95  IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL- 153

Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
             I+          L  L L  + ++++  ++  +   L + N++ N L  L        
Sbjct: 154 ERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLA------- 202

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
             + ++ LD S+  +   +     V    L  L L  N L+       L     L  + L
Sbjct: 203 IPIAVEELDASHNSINV-VRGPVNVE---LTILKLQHNNLTDTA---WLLNYPGLVEVDL 255

Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
               L ++  + F +   L+ L IS+N  + A      P+ +L+ LD+ +++L  + R+ 
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 314

Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN---NCGLTRLNETVFHENYTYPD 362
             +   L+ L L  N + TL+      L +L++   +   N                  +
Sbjct: 315 P-QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALF-----------RN 362

Query: 363 LEELRLSGNPLHVLPDSTKQYSM 385
           +    +     H   D   ++ +
Sbjct: 363 VARPAVDDADQHCKIDYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  176 bits (447), Expect = 4e-49
 Identities = 90/412 (21%), Positives = 148/412 (35%), Gaps = 67/412 (16%)

Query: 62  NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
                  + +      +        L + + +      +  +  +  D+   ++ L L+ 
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
            ++   ID T        +  L +  + I  LP +VF N   L  L L  N+L  L    
Sbjct: 79  LQI-EEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP--R 134

Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV--------- 232
            +  N   L +L +SN +L+  + +D F   T L+ L LS N L+  DLS+         
Sbjct: 135 GIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193

Query: 233 ------ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLE 286
                  L     +  L   +  ++ +          L  L + HN L D  TA L    
Sbjct: 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTD--TAWLLNYP 248

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
            L  +D+ Y+ L++I    F+KM  L+ L +S N+L  L +   Q +  L VL+L++  L
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHL 307

Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
             +          +  LE L L  N +  L  S                           
Sbjct: 308 LHVERNQPQ----FDRLENLYLDHNSIVTLKLS--------------------------- 336

Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR-CKIDY 457
                   T+  L+ L LS N          L   ++R    D  + CKIDY
Sbjct: 337 --------THHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  170 bits (434), Expect = 2e-47
 Identities = 88/431 (20%), Positives = 148/431 (34%), Gaps = 68/431 (15%)

Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
            S          + +       +  +  +   L     +  + S +  LP  +  +   +
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
             LNL + ++ ++D           +  L +    ++  L    F N   L  L L  N 
Sbjct: 72  ELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERND 128

Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL-LS 283
           LS+           KL  LS+ N  L R+  +TF   T LQ L +S N L    T + LS
Sbjct: 129 LSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL----THVDLS 183

Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
            + SL H ++ Y+ L  ++        +++ L  S N +  +   +   LT L    L +
Sbjct: 184 LIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVELTILK---LQH 235

Query: 344 CGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILF 403
             LT     +      YP L E+ LS N L  +                   F  +    
Sbjct: 236 NNLTDTAWLL-----NYPGLVEVDLSYNELEKIMYHP---------------FVKM---- 271

Query: 404 ILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVF 463
                          LE L +S N L  L    L    +  L+ LDLS   + ++  N  
Sbjct: 272 -------------QRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVERNQP 315

Query: 464 NNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSI 523
                + +L L +N++     L          L++L LS+N+    S   L  N  +   
Sbjct: 316 QFD-RLENLYLDHNSI---VTLKL---STHHTLKNLTLSHNDWDCNSLRALFRN--VARP 366

Query: 524 KLVGNPWKCDC 534
            +      C  
Sbjct: 367 AVDDADQHCKI 377

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  182 bits (464), Expect = 8e-50
 Identities = 86/520 (16%), Positives = 183/520 (35%), Gaps = 48/520 (9%)

Query: 7   VYNDRRNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTT 65
           VY    ++       +    + ++ +        R +  L + +  + +I+   F    T
Sbjct: 41  VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 100

Query: 66  LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
           + KL +  N +R + P VF  +  L  L+L R +L+ +    F N   L TL +S N L 
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL- 159

Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
             I+          L  L L  + ++++  ++  +   L + N++ N L  L        
Sbjct: 160 ERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLA------- 208

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
             + ++ LD S+  +   +     V    L  L L  N L+       L     L  + L
Sbjct: 209 IPIAVEELDASHNSINV-VRGPVNVE---LTILKLQHNNLTDTA---WLLNYPGLVEVDL 261

Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
               L ++  + F +   L+ L IS+N  + A      P+ +L+ LD+ +++L  + R+ 
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 320

Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN---NCGLTRLNETVFHENYTYPD 362
             +   L+ L L  N + TL+      L +L++   +   N                  +
Sbjct: 321 P-QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALF-----------RN 368

Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL 422
           +    +     H   D   ++ +    +   K +   ++ +I   +V         ++  
Sbjct: 369 VARPAVDDADQHCKIDYQLEHGLCCKESD--KPYLDRLLQYIALTSVVE------KVQRA 420

Query: 423 RLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT 482
           +   +    + +   L   +++   + L   +      N            L N  +   
Sbjct: 421 QGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ----QLTNEQIQQE 476

Query: 483 SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITS 522
             L     ++   L    L  + L   S  + +    +  
Sbjct: 477 QLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKE 516

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  173 bits (440), Expect = 2e-46
 Identities = 95/478 (19%), Positives = 166/478 (34%), Gaps = 73/478 (15%)

Query: 62  NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
                  + +      +        L + + +      +  +  +  D+   ++ L L+ 
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
            +++  ID T        +  L +  + I  LP +VF N   L  L L  N+L  L    
Sbjct: 85  LQIEE-ID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV--------- 232
               N   L +L +SN +L+  + +D F   T L+ L LS N L+  DLS+         
Sbjct: 143 F--HNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199

Query: 233 ------ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLE 286
                  L     +  L   +  ++ +          L  L + HN L D  TA L    
Sbjct: 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTD--TAWLLNYP 254

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
            L  +D+ Y+ L++I    F+KM  L+ L +S N+L  L +   Q +  L VL+L++  L
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHL 313

Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
             +          +  LE L L  N +  L  S                           
Sbjct: 314 LHVERNQPQ----FDRLENLYLDHNSIVTLKLS--------------------------- 342

Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR-CKIDYLPPNVF-- 463
                   T+  L+ L LS N          L   ++R    D  + CKIDY   +    
Sbjct: 343 --------THHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDYQLEHGLCC 393

Query: 464 ----NNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN 517
                   +     +A  ++    + +         + S+   ++ +T      L+ N
Sbjct: 394 KESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN 451

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (331), Expect = 3e-32
 Identities = 61/303 (20%), Positives = 102/303 (33%), Gaps = 44/303 (14%)

Query: 236 PLTKLHRLSLRNCGLSRLPANTFHRFTC-----LQELDISHNPLIDAFTALLSPLESLEH 290
                +     +  +     + +  F        + +   ++ +     ALL     +E 
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
           L++    ++ I    F    +++ L +  N +  L   +FQN+  L+VL L    L+ L 
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 351 ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN---- 406
             +FH     P L  L +S N L  + D T               F     L  L     
Sbjct: 140 RGIFHNT---PKLTTLSMSNNNLERIEDDT---------------FQATTSLQNLQLSSN 181

Query: 407 -ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNN 465
             T    +   P L    +S N L  L            +  LD S   I+ +   V   
Sbjct: 182 RLTHVDLS-LIPSLFHANVSYNLLSTLAI-------PIAVEELDASHNSINVVRGPVN-- 231

Query: 466 TRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
              +T L L +NNL+ T+ L          L  +DLS N L  I        + +  + +
Sbjct: 232 -VELTILKLQHNNLTDTAWLLN-----YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 526 VGN 528
             N
Sbjct: 286 SNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (285), Expect = 2e-26
 Identities = 48/290 (16%), Positives = 99/290 (34%), Gaps = 52/290 (17%)

Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
           + + +  R      + +N  +      ++ I        F      L + + +    S +
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQY-DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
           +++  +       ++ L L+  ++E +++  F     +  L +    +  L   VF    
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV- 122

Query: 359 TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPD 418
             P L  L L  N L  LP                  F                    P 
Sbjct: 123 --PLLTVLVLERNDLSSLPRGI---------------FHNT-----------------PK 148

Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
           L  L +S N L  +          + L++L LS  ++ ++  ++     ++   N++ N 
Sbjct: 149 LTTLSMSNNNLERIEDDTFQA--TTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNL 203

Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
           LS         L + + +E LD S+N++  +   V      +T +KL  N
Sbjct: 204 LST--------LAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHN 242

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  174 bits (443), Expect = 2e-47
 Identities = 80/517 (15%), Positives = 160/517 (30%), Gaps = 58/517 (11%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
           +    L + +  +S++      +L+ L  L +S N ++ ++  VF     LEYL L+   
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
           L  IS        +LK L+LS N   + +      GN+ +L  L L  + +        A
Sbjct: 81  LVKIS---CHPTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
           +    + L +      + +    L         +          + + +      L    
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 220 LSGNP---LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC-----LQELDISH 271
           +         +  LS+  K  T     +L    +     +            +    IS+
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 272 NPLI-----DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
             L        F    + L++L    +            +   +++     + +    + 
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMR 386
                 ++    L+ +N  LT              +LE L L  N L  L    +     
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCG---HLTELETLILQMNQLKELSKIAE----- 368

Query: 387 TIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR 446
                                 +  +      L++L +S N +               L 
Sbjct: 369 ----------------------MTTQ---MKSLQQLDISQNSVSYDEKKGDC-SWTKSLL 402

Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
           SL++S   +             I  L+L +N +    +   +    L  L+ L++++N L
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVK----LEALQELNVASNQL 456

Query: 507 THISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEW 542
             +   +     ++  I L  NPW C C  I  +  W
Sbjct: 457 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 493

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (293), Expect = 9e-28
 Identities = 74/443 (16%), Positives = 142/443 (32%), Gaps = 64/443 (14%)

Query: 17  PGLITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
             L  ++L+ N     P+   F     L +L +    L K +     +L     L + G 
Sbjct: 90  VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
                E         L+       ++ + +   F  +  +    ++  +L         +
Sbjct: 150 TYGEKE-----DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL-------SNI 197

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             + + +      S ++ L  N   +N  L N+    N  I +            +    
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI----LQLVWHTTVWYFS 253

Query: 195 LSNCHLKGPLSEDAFVNA-TKLRTLYLSGNPLSA--ADLSVALKPLTKLHRLSLRNCGLS 251
           +SN  L+G L    F  + T L+ L +            S   +  + ++  +    G  
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST--FLKM 309
            +      + +    LD S+N L D        L  LE L +  + L+ +S+      +M
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 310 TSLKTLILSGNKLETLE-SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
            SL+ L +S N +   E  G       L  L +++  LT               ++ L L
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR-----IKVLDL 428

Query: 369 SGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNP 428
             N +  +P                        +  L             L+EL ++ N 
Sbjct: 429 HSNKIKSIPKQ----------------------VVKL-----------EALQELNVASNQ 455

Query: 429 LHVLPTGNLLPPQLSRLRSLDLS 451
           L  +P G     +L+ L+ + L 
Sbjct: 456 LKSVPDGIF--DRLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (283), Expect = 2e-26
 Identities = 40/291 (13%), Positives = 87/291 (29%), Gaps = 59/291 (20%)

Query: 35  AFLVARSLLYLYMQECTL-----SKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTS 89
             +   ++ Y  +    L      +      T+L  L+   +  +     +  +++  ++
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 90  LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG 149
           +            +       ++    L+ S N L                         
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD----------------------- 338

Query: 150 ISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF 209
                     + T L  L L  N+L +L     +   +  L  LD+S   +     +   
Sbjct: 339 ---TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
                L +L +S N L+    ++      ++  L L +  +  +P         LQEL++
Sbjct: 396 SWTKSLLSLNMSSNILTD---TIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNV 451

Query: 270 SHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
           + N                         L+ +    F ++TSL+ + L  N
Sbjct: 452 ASN------------------------QLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (271), Expect = 6e-25
 Identities = 40/246 (16%), Positives = 85/246 (34%), Gaps = 32/246 (13%)

Query: 30  QPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTS 89
           +  + +    ++L    +            +   + +N  + + +  R++       ++ 
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325

Query: 90  LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG 149
             +L  +   LT        +L  L+TL L  N+LK       +   +  L  LD+ Q+ 
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 150 I-SNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDA 208
           +  +      +    L +LN++ N L D                L               
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDT-----------IFRCLP-------------- 420

Query: 209 FVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELD 268
                +++ L L  N + +  +   +  L  L  L++ +  L  +P   F R T LQ++ 
Sbjct: 421 ----PRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474

Query: 269 ISHNPL 274
           +  NP 
Sbjct: 475 LHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 44/201 (21%), Positives = 63/201 (31%), Gaps = 46/201 (22%)

Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
            S N L  +   L Q  T   +L ++   ++ L  +          L  L +S N +  L
Sbjct: 7   RSKNGLIHVPKDLSQKTT---ILNISQNYISELWTSDILS---LSKLRILIISHNRIQYL 60

Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGN 436
             S                F F                   +LE L LS N L  +    
Sbjct: 61  DISV---------------FKFNQ-----------------ELEYLDLSHNKLVKISCHP 88

Query: 437 LLPPQLSRLRSLDLSRCKIDYLPPN-VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495
                   L+ LDLS    D LP    F N   +  L L+  +L  +S L    L++   
Sbjct: 89  -----TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 496 LESLDLSNNNLTHISPTVLRH 516
           L  L L         P  L+ 
Sbjct: 144 L--LVLGETYGEKEDPEGLQD 162

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  173 bits (441), Expect = 2e-47
 Identities = 64/453 (14%), Positives = 128/453 (28%), Gaps = 55/453 (12%)

Query: 60  FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
             N        ++ + L+     +     +++ L L+   L+ IS +       L+ L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
           S N L   +D    L +L  L TLDL  + +  L          +  L+ A N +  +  
Sbjct: 66  SSNVLYETLD----LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSC 116

Query: 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK 239
           +           ++ L+N  +   L +      ++++ L L  N +   + +        
Sbjct: 117 SR-----GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
           L  L+L+   +  +       F  L+ LD+S N  +            +  + +  + L 
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 300 RISRSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
            I ++      +L+   L GN          F     +  +         + +       
Sbjct: 228 LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT-----VKKLTGQNEE 281

Query: 359 TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPD 418
                            LP                   D L+ L                
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPF---------------ADRLIALKRKE------------ 314

Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
              L   G+    L          +R R +D  + +   +   V    +   +L      
Sbjct: 315 HALLSGQGSETERLECERE---NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511
           L        +    L       +    L H + 
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  156 bits (397), Expect = 2e-41
 Identities = 76/500 (15%), Positives = 156/500 (31%), Gaps = 41/500 (8%)

Query: 14  LDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
            +        +  + ++         A ++  L +    LS+I+       T L  L+LS
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 73  GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
            N L        + L++L  L LN   +  +          ++TL  + N +       +
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR-----V 114

Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
                     + L  + I+ L D      + ++ L+L  NE+  ++ A     +   L+ 
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEH 173

Query: 193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
           L+L    +   +         KL+TL LS N L+   +    +    +  +SLRN  L  
Sbjct: 174 LNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVL 228

Query: 253 LPANTFHRFTCLQELDISHNPL-IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
           +          L+  D+  N           S  + ++ +      +++++     + T 
Sbjct: 229 IE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTV 285

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR-LNETVFHENYTYPDLEELRLSG 370
                      E L +     L  L   E           E +  E        E+    
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 371 NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
                          RT+  Q+       + L    + +  +  +        L G    
Sbjct: 346 EQY------------RTVIDQVTLRKQAKITLEQKKKALDEQV-SNGRRAHAELDGTLQQ 392

Query: 431 VLPTGNL--LPPQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSF 487
            +    L     + S L+ L     + + +           I   ++  +  +  +E + 
Sbjct: 393 AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENA 452

Query: 488 QFLDVLLELESLDLSNNNLT 507
           + L  L     L L++ N T
Sbjct: 453 R-LKKLNGEADLALASANAT 471

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  148 bits (375), Expect = 2e-38
 Identities = 73/423 (17%), Positives = 140/423 (33%), Gaps = 60/423 (14%)

Query: 108 FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
             N N  K  +++ + LK  +    +  +   +  LDL  + +S +     A  T L  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSA 227
           NL+ N L +        ++L  L +LDL+N +++        +    + TL+ + N +S 
Sbjct: 64  NLSSNVLYETLDL----ESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 228 ADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLE 286
               V+         + L N  ++ L        + +Q LD+  N +    F  L +  +
Sbjct: 113 ---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
           +LEHL++ Y+ +  +          LKTL LS NKL  +    FQ+   ++ + L N  L
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226

Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
             + + +        +LE   L GN  H                        L   F  N
Sbjct: 227 VLIEKALRFS----QNLEHFDLRGNGFHCGT---------------------LRDFFSKN 261

Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT 466
                            ++   +  L   N    + +            + LP    +  
Sbjct: 262 ------------QRVQTVAKQTVKKLTGQNEE--ECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 467 RNITSLNLANNNLSMTSELSFQFLDV-LLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
             +     A  +   +     +           +D        +   V    +A  +++ 
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 526 VGN 528
              
Sbjct: 368 KKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  127 bits (321), Expect = 2e-31
 Identities = 59/311 (18%), Positives = 109/311 (35%), Gaps = 54/311 (17%)

Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
           +   N  + +   ++ + L  A  S   +    +  L L    LS++ A     FT L+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 267 LDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
           L++S N L +     L  L +L  LD+  + +Q +         S++TL  + N +  + 
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVS 115

Query: 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMR 386
               Q   ++    L N  +T L +           ++ L L  N +  +  +    S  
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEG---CRSRVQYLDLKLNEIDTVNFAELAASS- 168

Query: 387 TIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR 446
                                           LE L L  N ++ +    +      +L+
Sbjct: 169 ------------------------------DTLEHLNLQYNFIYDVKGQVVFA----KLK 194

Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
           +LDLS  K+ ++ P  F +   +T ++L NN L +  +     L     LE  DL  N  
Sbjct: 195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDLRGNGF 249

Query: 507 THISPTVLRHN 517
              +       
Sbjct: 250 HCGTLRDFFSK 260

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (312), Expect = 3e-30
 Identities = 54/298 (18%), Positives = 104/298 (34%), Gaps = 53/298 (17%)

Query: 237 LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
             +     + +  L +  A+       ++ELD+S NPL     A L+P   LE L++  +
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE 356
            L          +++L+TL L+ N ++ L          +  L   N  ++R++ +    
Sbjct: 69  VLYETL--DLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSRG-- 119

Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY 416
                  + + L+ N + +L D                                      
Sbjct: 120 ----QGKKNIYLANNKITMLRDLD---------------EGCR----------------- 143

Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
             ++ L L  N +  +    L       L  L+L    I  +   V      + +L+L++
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSS 200

Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDC 534
           N L+    +  +F      +  + L NN L  I    LR ++ +    L GN + C  
Sbjct: 201 NKLA---FMGPEFQS-AAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGT 253

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 45/235 (19%)

Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
                     K   ++ + L+   + L Q+  ++  L+L+   L++++            
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF---TK 59

Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY-----TYP 417
           LE L LS N L+   D                  + L  L  L+    + NY       P
Sbjct: 60  LELLNLSSNVLYETLD-----------------LESLSTLRTLD---LNNNYVQELLVGP 99

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
            +E L  + N +  +             +++ L+  KI  L          +  L+L  N
Sbjct: 100 SIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV---------LRHNRAITSI 523
            +   +            LE L+L  N +  +   V         L  N+ +  +
Sbjct: 155 EIDTVNFAE--LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFM 206

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 15/166 (9%), Positives = 38/166 (22%), Gaps = 2/166 (1%)

Query: 5   HPVYNDRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLT 64
            P  +    L       ++   +  + +E           +   +     +  Q      
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQ 360

Query: 65  TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
               L+     L             L+  +        +   A +  + L+ L     + 
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRY 419

Query: 125 KSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170
              +           +   D+ Q   + L +            +LA
Sbjct: 420 -EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  167 bits (425), Expect = 1e-46
 Identities = 65/311 (20%), Positives = 121/311 (38%), Gaps = 23/311 (7%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
            L  +   +  L  +  +   + T L   DL  N +  +    F  L  L  L+L    +
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
           + I   AF  L  L+ L +S+N L       +       L  L +  + I  +P  VF+ 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVE-----IPPNLPSSLVELRIHDNRIRKVPKGVFSG 145

Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL 220
              +  + +  N L +          L  L+ L +S   L G + +D       L  L+L
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP---ETLNELHL 200

Query: 221 SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA 280
             N + A +L   L   +KL+RL L +  +  +   +      L+EL + +N L     A
Sbjct: 201 DHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPA 258

Query: 281 LLSPLESLEHLDMGYSNLQRISRSTF------LKMTSLKTLILSGNKLE--TLESGLFQN 332
            L  L+ L+ + +  +N+ ++  + F      +K      + L  N +    ++   F+ 
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

Query: 333 LTHLSVLELNN 343
           +T    ++  N
Sbjct: 319 VTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  149 bits (379), Expect = 3e-40
 Identities = 59/312 (18%), Positives = 118/312 (37%), Gaps = 41/312 (13%)

Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
           P    ++L  N I  + +  F   + L  L +    +SKI+ + F+ L  L KL +S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           L  I P +    +SL  L ++   +  +    F  L ++  +E+  N L++         
Sbjct: 114 LVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
            L KL+ L + ++ ++ +P ++      L  L+L  N++  +++          L  L L
Sbjct: 171 GL-KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDL--LRYSKLYRLGL 224

Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
            +  ++  +   +      LR L+L  N LS   +   L  L  L  + L    ++++  
Sbjct: 225 GHNQIRM-IENGSLSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNITKVGV 281

Query: 256 NTFH------RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
           N F       +      + + +NP+                          +  +TF  +
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPV----------------------PYWEVQPATFRCV 319

Query: 310 TSLKTLILSGNK 321
           T    +     K
Sbjct: 320 TDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  136 bits (345), Expect = 1e-35
 Identities = 69/321 (21%), Positives = 107/321 (33%), Gaps = 56/321 (17%)

Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
            LDL N  +   L +D F     L  L L  N +S      A  PL KL +L +    L 
Sbjct: 58  LLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLV 115

Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR--ISRSTFLKM 309
            +P N       L EL I  N +      + S L ++  ++MG + L+        F  +
Sbjct: 116 EIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
             L  L +S  KL  +   L + L  L    L++  +  +          Y  L  L L 
Sbjct: 173 -KLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQAIELEDLLR---YSKLYRLGLG 225

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
            N + ++ + +                 FL                 P L EL L  N L
Sbjct: 226 HNQIRMIENGS---------------LSFL-----------------PTLRELHLDNNKL 253

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTR------NITSLNLANNNLSMTS 483
             +P G    P L  L+ + L    I  +  N F              ++L NN +    
Sbjct: 254 SRVPAGL---PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 484 ELSFQFLDVLLELESLDLSNN 504
                F   + +  ++   N 
Sbjct: 311 VQPATFRC-VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  120 bits (304), Expect = 3e-30
 Identities = 55/290 (18%), Positives = 95/290 (32%), Gaps = 49/290 (16%)

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
           L  +   + GL  +P            LD+ +N + +        L+ L  L +  + + 
Sbjct: 35  LRVVQCSDLGLKAVPKEISPD---TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
           +I    F  +  L+ L +S N L  +   L  +L  L    +++  + ++ + VF     
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGL-- 146

Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
             ++  + + GNPL                   +           L             L
Sbjct: 147 -RNMNCIEMGGNPLENSG----------FEPGAFDG---------LK------------L 174

Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
             LR+S   L  +P           L  L L   KI  +          +  L L +N +
Sbjct: 175 NYLRISEAKLTGIPKDLP-----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
            M    S  FL     L  L L NN L+ + P  L   + +  + L  N 
Sbjct: 230 RMIENGSLSFLP---TLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNN 275

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  173 bits (440), Expect = 3e-46
 Identities = 84/557 (15%), Positives = 162/557 (29%), Gaps = 85/557 (15%)

Query: 19  LITINLNANPIQPVEGAFLVA-----RSLLYLYMQECTLSKINPQFFTNLTTLN--KLDL 71
           L  + L ++  +  E  F         S            K    +       +  K  +
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 72  SGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHID-- 129
           + +P +               +     N+T++   A   L  L+   +  +   +     
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICE 225

Query: 130 --WTLVLGNLGKLDTLDLRQSGISNLPDNVFANN-------------TWLRNLNLAENEL 174
                      +  T DL+   + +L D    N                ++ +N+A N  
Sbjct: 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 175 IDLDVATTLGQNLV------HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
           I  +      Q L        +  + +   +LK    E +     KL  L    N L   
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-- 343

Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLES 287
               A     KL  L+L    ++ +PAN       ++ L  +HN L           +  
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 288 LEHLDMGYSNLQRISRSTF-------LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE 340
           +  +D  Y+ +  +    F        K  ++ ++ LS N++      LF   + LS + 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 341 LNNCGLTRLNETVFHENYTY----PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF 396
           L    LT + +    +          L  + L  N L  L D  +  ++           
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL----------- 512

Query: 397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRL---RSLDLSRC 453
                               P L  + LS N     PT  L    L         D    
Sbjct: 513 --------------------PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN 552

Query: 454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV 513
           +     P       ++T L + +N++    +++ +       +  LD+ +N    I  + 
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDI---RKVNEKITP---NISVLDIKDNPNISIDLSY 606

Query: 514 LRHNRAITSIKLVGNPW 530
           +          L  +  
Sbjct: 607 VCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  165 bits (421), Expect = 1e-43
 Identities = 82/504 (16%), Positives = 163/504 (32%), Gaps = 83/504 (16%)

Query: 48  QECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGV-FDPLTSLEYLMLNRCNLTYISPS 106
           +  +      Q   N     +LD+ G      +PGV  +    +  L L     +   P 
Sbjct: 45  KNWSQQGFGTQPGANWNFNKELDMWGA-----QPGVSLNSNGRVTGLSLEGFGASGRVPD 99

Query: 107 AFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN 166
           A   L  L+ L L  +      +       +    + + +Q    +        +     
Sbjct: 100 AIGQLTELEVLALGSHGE-KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 167 LNLAENELIDLDVATTL---GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
            +L ++ +       ++    +  +    +   + ++         +  TKLR  Y+  +
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNS 216

Query: 224 PLSAADLSVALKP------------------LTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
           P  A ++  A +                   L  L  + + NC               +Q
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 266 ELDISHNPLIDAFT--------ALLSPLESLEHLDMGYSNLQRISR-STFLKMTSLKTLI 316
            ++++ N  I            A     E ++ + +GY+NL+     ++  KM  L  L 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
              N+LE      F +   L+ L L    +T +             +E L  + N L  +
Sbjct: 337 CLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFT---EQVENLSFAHNKLKYI 392

Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGN 436
           P+     S+                                 +  +  S N +  +   N
Sbjct: 393 PNIFDAKSVSV-------------------------------MSAIDFSYNEIGSVDGKN 421

Query: 437 L--LPP---QLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD 491
              L P   +   + S++LS  +I   P  +F+    ++S+NL  N L+   + S +  +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 492 VLLE----LESLDLSNNNLTHISP 511
              +    L S+DL  N LT +S 
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSD 505

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (411), Expect = 2e-42
 Identities = 74/530 (13%), Positives = 156/530 (29%), Gaps = 77/530 (14%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE----PGVFDPLTSLEYLMLN 96
            +  L ++    S   P     LT L  L L  +  ++ E    P       S E     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 97  RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDN 156
           R +            +    ++   N                K   +    + I+ +   
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 157 VFANNTWLRNLNLAENELIDLDVATTLGQ-----------------NLVHLDSLDLSNCH 199
           V    T LR   +  +  +  ++                       NL  L  +++ NC 
Sbjct: 202 VM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 200 LKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA-------LKPLTKLHRLSLRNCGLSR 252
               L         +++ + ++ N   + +                K+  + +    L  
Sbjct: 261 NLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 253 LPA-NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
            P   +  +   L  L+  +N L     A       L  L++ Y+ +  I  +       
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQ 378

Query: 312 LKTLILSGNKLETLESGLF-QNLTHLSVLELNNCGLTRLNETVFH----ENYTYPDLEEL 366
           ++ L  + NKL+ + +    ++++ +S ++ +   +  ++   F       +   ++  +
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 367 RLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSG 426
            LS N +   P                  F                      L  + L G
Sbjct: 439 NLSNNQISKFPKEL---------------FSTG-----------------SPLSSINLMG 466

Query: 427 NPLHVLPTGNLLPP-----QLSRLRSLDLSRCKIDYLPPNV-FNNTRNITSLNLANNNLS 480
           N L  +P  +L            L S+DL   K+  L  +        +  ++L+ N+ S
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526

Query: 481 M--TSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
              T  L+   L         D   N      P  +    ++T +++  N
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (340), Expect = 3e-33
 Identities = 58/333 (17%), Positives = 111/333 (33%), Gaps = 23/333 (6%)

Query: 19  LITINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
           +  I +  N ++  PVE +    + L  L      L    P F  +   L  L+L+ N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQI 365

Query: 77  RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF-DNLNHLKTLELSQNKLKSHIDWTLV-- 133
             I          +E L      L YI       +++ +  ++ S N++ S         
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 134 ---LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ----- 185
                    + +++L  + IS  P  +F+  + L ++NL  N L ++   +   +     
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN-----PLSAADLSVALKPLTKL 240
           N   L S+DL    L     +        L  + LS N     P    + S  LK     
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS-TLKGFGIR 544

Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
           ++   +     R           L +L I  N +      +     ++  LD+  +    
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDIKDNPNIS 601

Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
           I  S           +L  +K + +      ++
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  114 bits (287), Expect = 1e-26
 Identities = 40/355 (11%), Positives = 97/355 (27%), Gaps = 58/355 (16%)

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
           +   +  L L      G +  DA    T+L  L L  +     +     K ++       
Sbjct: 79  SNGRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 246 RNCGLSRLPANTFH-----RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
           +                   F+ L +  I+ +P   +             +    +N+  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY 360
           +S    +++T L+   +  +              +    +       + +          
Sbjct: 198 VS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN--------L 248

Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
            DL ++ +   P            +  +PT +            L           P+++
Sbjct: 249 KDLTDVEVYNCPN-----------LTKLPTFLKA----------L-----------PEMQ 276

Query: 421 ELRLSGNPLHVLPTGNLLP------PQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLN 473
            + ++ N                  P   +++ + +    +   P        + +  L 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
              N L      +F      ++L SL+L+ N +T I          + ++    N
Sbjct: 337 CLYNQLEGKLP-AFGSE---IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  168 bits (427), Expect = 8e-46
 Identities = 67/308 (21%), Positives = 116/308 (37%), Gaps = 46/308 (14%)

Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
           +  ++     GLS +P          + L++  N +          L  LE L +G +++
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSN---TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
           ++I    F  + SL TL L  N L  + SG F+ L+ L  L L N  +  +    F+   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV- 170

Query: 359 TYPDLEELRLSG-NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYP 417
             P L  L L     L  + +                 F+ L                  
Sbjct: 171 --PSLMRLDLGELKKLEYISEGA---------------FEGL-----------------F 196

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
           +L+ L L    +  +P        L  L  L++S      + P  F+   ++  L + N+
Sbjct: 197 NLKYLNLGMCNIKDMPNLT----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIA 537
            +S+    +F  L     L  L+L++NNL+ +   +    R +  + L  NPW CDC+I 
Sbjct: 253 QVSLIERNAFDGLA---SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309

Query: 538 DMWEWATR 545
            +  W   
Sbjct: 310 WLAWWLRE 317

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  158 bits (401), Expect = 3e-42
 Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 32/259 (12%)

Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
                +NL  N IQ ++   F     L  L +   ++ +I    F  L +LN L+L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           L +I  G F+ L+ L  L L    +  I   AF+ +  L  L+L + K            
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK----------- 183

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
                         +  + +  F     L+ LNL    + D+         LV L+ L++
Sbjct: 184 --------------LEYISEGAFEGLFNLKYLNLGMCNIKDMPN----LTPLVGLEELEM 225

Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
           S  H    +   +F   + L+ L++  + +S  + + A   L  L  L+L +  LS LP 
Sbjct: 226 SGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHNNLSSLPH 283

Query: 256 NTFHRFTCLQELDISHNPL 274
           + F     L EL + HNP 
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  151 bits (384), Expect = 5e-40
 Identities = 72/294 (24%), Positives = 117/294 (39%), Gaps = 45/294 (15%)

Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
            +   +   + G+S +P  + +N    R LNL EN +  +   T   ++L HL+ L L  
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSN---TRYLNLMENNIQMIQADTF--RHLHHLEVLQLGR 108

Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257
             ++  +   AF     L TL L  N L+    S A + L+KL  L LRN  +  +P+  
Sbjct: 109 NSIRQ-IEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIESIPSYA 166

Query: 258 FHRFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
           F+R   L  LD+     ++  +      L +L++L++G  N++ +       +  L+ L 
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELE 224

Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
           +SGN    +  G F  L+ L  L + N  ++ +    F        L EL L+ N L  L
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL---ASLVELNLAHNNLSSL 281

Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
           P                  F  L                   L EL L  NP +
Sbjct: 282 PHDL---------------FTPL-----------------RYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
           ++   +  +R  +  +P  + +NT     LNL  NN+ M    +F+ L     LE L L 
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSNT---RYLNLMENNIQMIQADTFRHLH---HLEVLQLG 107

Query: 503 NNNLTHISPTVLRHNRAITSIKLVGN 528
            N++  I         ++ +++L  N
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDN 133

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
             L  + +  + +  +E  AF    SL+ L +    LS +    FT L  L +L L  NP
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 76  LR 77
             
Sbjct: 302 WN 303

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  165 bits (419), Expect = 1e-45
 Identities = 56/311 (18%), Positives = 104/311 (33%), Gaps = 48/311 (15%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
             +  LDLS N +  I         +L+ L+L    +  I   +F +L  L+ L+LS N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
           L +                          L  + F   + L  LNL  N    L   +  
Sbjct: 112 LSN--------------------------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
             +L  L  L + N      +    F   T L  L +  + L + +   +LK +  +  L
Sbjct: 146 -SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHL 203

Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR 303
            L       L        + ++ L++    L                    +S L     
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLD----------------TFHFSELSTGET 247

Query: 304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
           ++ +K  + + + ++   L  +   L   ++ L  LE +   L  + + +F        L
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQLKSVPDGIFD---RLTSL 303

Query: 364 EELRLSGNPLH 374
           +++ L  NP  
Sbjct: 304 QKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  148 bits (376), Expect = 9e-40
 Identities = 53/267 (19%), Positives = 100/267 (37%), Gaps = 14/267 (5%)

Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
             + +++L+ N I  +         +L  L +    ++ I    F++L +L  LDLS N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISP-SAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
           L  +    F PL+SL +L L       +   S F +L  L+ L +      + I      
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDF 170

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             L  L+ L++  S + +       +   + +L L   + I L            ++ L+
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL--LEIFVDVTSSVECLE 228

Query: 195 LSNCHLKG-------PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRN 247
           L +  L             ++ +     R + ++   L    +   L  ++ L  L    
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSR 286

Query: 248 CGLSRLPANTFHRFTCLQELDISHNPL 274
             L  +P   F R T LQ++ +  NP 
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  141 bits (357), Expect = 4e-37
 Identities = 70/312 (22%), Positives = 112/312 (35%), Gaps = 44/312 (14%)

Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
             +  L L N  ++ +  +   R   LQ L ++ N +        S L SLEHLD+ Y+ 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLEL-NNCGLTRLNETVFH 355
           L  +S S F  ++SL  L L GN  +TL E+ LF +LT L +L + N    T++    F 
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 356 ENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYT 415
                  LEEL +  + L      +                  +                
Sbjct: 172 GL---TFLEELEIDASDLQSYEPKS---------------LKSI---------------- 197

Query: 416 YPDLEELRLSGNPLHVLPTG---NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSL 472
             ++  L L      +L           +   LR  DL       L     N+     + 
Sbjct: 198 -QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 473 -NLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWK 531
            N+   + S+   +    L+ +  L  L+ S N L  +   +     ++  I L  NPW 
Sbjct: 257 RNVKITDESLFQVMKL--LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

Query: 532 CDCN-IADMWEW 542
           C C  I  +  W
Sbjct: 315 CSCPRIDYLSRW 326

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 24/113 (21%)

Query: 441 QLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLEL---- 496
              R      S   ++ +P  +        SL+L+NN ++  S    Q    L  L    
Sbjct: 29  SCDRNGICKGSSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQRCVNLQALVLTS 85

Query: 497 -----------------ESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC 532
                            E LDLS N L+++S +  +   ++T + L+GNP+K 
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 13/61 (21%), Positives = 19/61 (31%)

Query: 17  PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
                + +    +  V         LL L      L  +    F  LT+L K+ L  NP 
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

Query: 77  R 77
            
Sbjct: 314 D 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  164 bits (417), Expect = 2e-45
 Identities = 61/312 (19%), Positives = 122/312 (39%), Gaps = 43/312 (13%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
                L +Q   +++I    F NL  L+ L L  N +  I PG F PL  LE L L++  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
           L  +          L+ L + +N+                          I+ +  +VF 
Sbjct: 112 LKELPEKMPKT---LQELRVHENE--------------------------ITKVRKSVFN 142

Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
               +  + L  N L    +     Q +  L  + +++ ++   + +    +   L  L+
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPS---LTELH 198

Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT 279
           L GN ++  D + +LK L  L +L L    +S +   +      L+EL +++N L     
Sbjct: 199 LDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVP 256

Query: 280 ALLSPLESLEHLDMGYSNLQRISRSTFL------KMTSLKTLILSGNKLET--LESGLFQ 331
             L+  + ++ + +  +N+  I  + F       K  S   + L  N ++   ++   F+
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 332 NLTHLSVLELNN 343
            +   + ++L N
Sbjct: 317 CVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  158 bits (401), Expect = 2e-43
 Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 40/312 (12%)

Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
           P    ++L  N I  + +G F   ++L  L +    +SKI+P  F  L  L +L LS N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           L+ +   +     +L+ L ++   +T +  S F+ LN +  +EL  N LKS         
Sbjct: 112 LKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
            + KL  + +  + I+ +P  +  +   L  L+L  N++  +D A+   + L +L  L L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASL--KGLNNLAKLGL 223

Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
           S   +   +   +  N   LR L+L+ N L    +   L     +  + L N  +S + +
Sbjct: 224 SFNSISA-VDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 256 NTFH------RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
           N F       +      + +  NP+                          I  STF  +
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPV----------------------QYWEIQPSTFRCV 318

Query: 310 TSLKTLILSGNK 321
                + L   K
Sbjct: 319 YVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  157 bits (399), Expect = 4e-43
 Identities = 71/438 (16%), Positives = 135/438 (30%), Gaps = 141/438 (32%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
            L  +   +  L K+      +   L   DL  N +  I+ G F  L +L  L+L    +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
           + ISP AF  L  L+ L LS+N+LK                           LP+ +   
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKE--------------------------LPEKMPKT 122

Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL 220
              L+ L + ENE+  +                            +  F    ++  + L
Sbjct: 123 ---LQELRVHENEITKV---------------------------RKSVFNGLNQMIVVEL 152

Query: 221 SGNPLSAADLSV-ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT 279
             NPL ++ +   A + + KL  + + +  ++ +P         L EL +  N       
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGN------- 202

Query: 280 ALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVL 339
                             + ++  ++   + +L  L LS N +  +++G   N  HL  L
Sbjct: 203 -----------------KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245

Query: 340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399
            LNN  L ++   +      +  ++ + L  N +  +  +                  F 
Sbjct: 246 HLNNNKLVKVPGGLAD----HKYIQVVYLHNNNISAIGSND-----------------FC 284

Query: 400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP 459
              +                  + L  NP+                        +   + 
Sbjct: 285 PPGYNTK---------KASYSGVSLFSNPV------------------------QYWEIQ 311

Query: 460 PNVFNNTRNITSLNLANN 477
           P+ F       ++ L N 
Sbjct: 312 PSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  146 bits (370), Expect = 4e-39
 Identities = 62/367 (16%), Positives = 130/367 (35%), Gaps = 72/367 (19%)

Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCH 199
           L  +     G+  +P ++  +      L+L  N++ ++       +NL +L +L L N  
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPD---TALLDLQNNKITEIKDGDF--KNLKNLHTLILINNK 87

Query: 200 LKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH 259
           +   +S  AF    KL  LYLS N L      +  K    L  L +    ++++  + F+
Sbjct: 88  ISK-ISPGAFAPLVKLERLYLSKNQLK----ELPEKMPKTLQELRVHENEITKVRKSVFN 142

Query: 260 RFTCLQELDISHNPLIDAF--TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317
               +  +++  NPL  +         ++ L ++ +  +N+  I +       SL  L L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHL 199

Query: 318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
            GNK+  +++   + L +L+ L L+   ++ ++          P L EL L+ N L  +P
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL---ANTPHLRELHLNNNKLVKVP 256

Query: 378 DSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNL 437
                                   L                ++ + L  N +  + +   
Sbjct: 257 GG----------------------LADH-----------KYIQVVYLHNNNISAIGSN-- 281

Query: 438 LPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE 497
                             D+ PP       + + ++L +N +     +       +    
Sbjct: 282 ------------------DFCPPGYNTKKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRA 322

Query: 498 SLDLSNN 504
           ++ L N 
Sbjct: 323 AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  143 bits (363), Expect = 4e-38
 Identities = 74/344 (21%), Positives = 123/344 (35%), Gaps = 77/344 (22%)

Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
            LDL N  +   + +  F N   L TL L  N +S      A  PL KL RL L    L 
Sbjct: 56  LLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK 113

Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
            LP         LQEL +  N                         + ++ +S F  +  
Sbjct: 114 ELPEKMP---KTLQELRVHEN------------------------EITKVRKSVFNGLNQ 146

Query: 312 LKTLILSGNKLET--LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
           +  + L  N L++  +E+G FQ +  LS + + +  +T + + +       P L EL L 
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP------PSLTELHLD 200

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
           GN +  +  ++                  L                  +L +L LS N +
Sbjct: 201 GNKITKVDAAS---------------LKGL-----------------NNLAKLGLSFNSI 228

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSF-- 487
             +  G+L       LR L L+  K+  +P     + + I  + L NNN+S      F  
Sbjct: 229 SAVDNGSLA--NTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 488 -QFLDVLLELESLDLSNNNLTH--ISPTVLRHNRAITSIKLVGN 528
             +         + L +N + +  I P+  R      +++L   
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  126 bits (319), Expect = 3e-32
 Identities = 56/290 (19%), Positives = 103/290 (35%), Gaps = 48/290 (16%)

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
           L  +   + GL ++P +          LD+ +N + +        L++L  L +  + + 
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
           +IS   F  +  L+ L LS N+L+ L   + + L  L    ++   +T++ ++VF+    
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGL-- 144

Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
              +  + L  NPL                               +    F        L
Sbjct: 145 -NQMIVVELGTNPLKSSG---------------------------IENGAFQGM---KKL 173

Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
             +R++   +  +P G         L  L L   KI  +         N+  L L+ N++
Sbjct: 174 SYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
           S     S         L  L L+NN L  + P  L  ++ I  + L  N 
Sbjct: 229 SAVDNGSLANTP---HLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 42/248 (16%), Positives = 84/248 (33%), Gaps = 51/248 (20%)

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
            L  +      L+++ +           L L  NK+  ++ G F+NL +L  L L N  +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
           ++++   F        LE L LS N L  LP+                       +    
Sbjct: 89  SKISPGAFAP---LVKLERLYLSKNQLKELPEK----------------------MP--- 120

Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKI--DYLPPNVFN 464
                       L+ELR+  N +  +         L+++  ++L    +    +    F 
Sbjct: 121 ----------KTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 465 NTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIK 524
             + ++ + +A+ N++   +           L  L L  N +T +    L+    +  + 
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPP------SLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 525 LVGNPWKC 532
           L  N    
Sbjct: 223 LSFNSISA 230

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  167 bits (424), Expect = 4e-45
 Identities = 96/473 (20%), Positives = 164/473 (34%), Gaps = 61/473 (12%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
              +   + +  ++       T+L  +  L      ++ I+    + L +L  +  +   
Sbjct: 24  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 79

Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
           LT I+P    NL  L  + ++ N++         L NL  L  L L  + I+++      
Sbjct: 80  LTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQITDIDP--LK 131

Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
           N T L  L L+ N + D+         L  L  L   N             N T L  L 
Sbjct: 132 NLTNLNRLELSSNTISDISAL----SGLTSLQQLSFGNQVTD----LKPLANLTTLERLD 183

Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT 279
           +S N +S  D+S  L  LT L  L   N  +S +        T L EL ++ N L D   
Sbjct: 184 ISSNKVS--DIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I 236

Query: 280 ALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVL 339
             L+ L +L  LD+  + +  +  +    +T L  L L  N++  +       LT L+ L
Sbjct: 237 GTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL 399
           ELN   L  ++     +N     L  L L  N +  +                  +   L
Sbjct: 293 ELNENQLEDISPISNLKN-----LTYLTLYFNNISDISP--------------VSSLTKL 333

Query: 400 VILFILNE--TVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY 457
             LF  N   +         ++  L    N +  L         L+R+  L L+      
Sbjct: 334 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA----NLTRITQLGLNDQAWTN 389

Query: 458 LPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
            P N   N     ++      L   + +S             D++ N  ++ +
Sbjct: 390 APVNYKANVSIPNTVKNVTGALIAPATISD-----GGSYTEPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  163 bits (414), Expect = 7e-44
 Identities = 95/455 (20%), Positives = 163/455 (35%), Gaps = 79/455 (17%)

Query: 60  FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
            T L    K  L    +          L  +  L  +R  +  I     + LN+L  +  
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINF 75

Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
           S N+L         L NL KL  + +  + I+++     AN T L  L L  N++ D+D 
Sbjct: 76  SNNQLTDITP----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID- 128

Query: 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK 239
              L  NL +L+ L+LS+  +       A    T L+ L               L  LT 
Sbjct: 129 --PLK-NLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVTD----LKPLANLTT 178

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
           L RL + +  +S +      + T L+ L  ++N + D     L  L +L+ L +  + L+
Sbjct: 179 LERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234

Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
            I   T   +T+L  L L+ N++  L       LT L+ L+L    ++ ++         
Sbjct: 235 DIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA-- 288

Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
              L  L L+ N L  +                      L                  +L
Sbjct: 289 ---LTNLELNENQLEDIS-----------------PISNL-----------------KNL 311

Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
             L L  N +  +   +     L++L+ L     K+  +      N  NI  L+  +N +
Sbjct: 312 TYLTLYFNNISDISPVS----SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQI 365

Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
           S  + L+      L  +  L L++   T+      
Sbjct: 366 SDLTPLAN-----LTRITQLGLNDQAWTNAPVNYK 395

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  160 bits (406), Expect = 1e-42
 Identities = 102/471 (21%), Positives = 168/471 (35%), Gaps = 75/471 (15%)

Query: 19  LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
           + T+  +   I+ ++G      +L  +      L+ I P    NLT L  + ++ N +  
Sbjct: 48  VTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 104

Query: 79  IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
           I P     LT+L  L L    +T I P    NL +L  LELS N +         L  L 
Sbjct: 105 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA----LSGLT 156

Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
            L  L          P    AN T L  L+++ N++ D+     L   L +L+SL  +N 
Sbjct: 157 SLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS---VLA-KLTNLESLIATNN 209

Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF 258
            +            T L  L L+GN L   D+   L  LT L  L L N  +S L     
Sbjct: 210 QIS---DITPLGILTNLDELSLNGNQLK--DIG-TLASLTNLTDLDLANNQISNLAP--L 261

Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318
              T L EL +  N + +   + L+ L +L +L++  + L+ I  S    + +L  L L 
Sbjct: 262 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLY 317

Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
            N +  +      +LT L  L   N  ++ ++      N     +  L    N +  L  
Sbjct: 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTN-----INWLSAGHNQISDLT- 369

Query: 379 STKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLL 438
                               L                   + +L L+       P     
Sbjct: 370 ----------------PLANL-----------------TRITQLGLNDQAWTNAPVNYKA 396

Query: 439 PPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
              +       +       + P   ++  + T  ++  N  S T+E+S+ F
Sbjct: 397 NVSIPNT----VKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTF 443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (285), Expect = 7e-27
 Identities = 86/393 (21%), Positives = 146/393 (37%), Gaps = 76/393 (19%)

Query: 138 GKLDTLDLRQS-GISNL-PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
           G L +  + Q   I+ +  D   A         L +  + D    T    +L  + +L  
Sbjct: 1   GPLGSATITQDTPINQIFTDTALAE---KMKTVLGKTNVTDTVSQT----DLDQVTTLQA 53

Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
               +K     D       L  +  S N L+  D++  LK LTKL  + + N  ++ +  
Sbjct: 54  DRLGIKSI---DGVEYLNNLTQINFSNNQLT--DIT-PLKNLTKLVDILMNNNQIADITP 107

Query: 256 NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL 315
                 T L  L + +N + D     L  L +L  L++  + +  IS      +TSL+ L
Sbjct: 108 --LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQL 161

Query: 316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHV 375
                  +        NLT L  L++++  ++ ++      N     LE L  + N +  
Sbjct: 162 SFGNQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTN-----LESLIATNNQISD 213

Query: 376 LPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTG 435
           +                      L                  +L+EL L+GN L  + T 
Sbjct: 214 IT-----------------PLGIL-----------------TNLDELSLNGNQLKDIGTL 239

Query: 436 NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE 495
                 L+ L  LDL+  +I  L P   +    +T L L  N +S  S L+      L  
Sbjct: 240 A----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG-----LTA 288

Query: 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
           L +L+L+ N L  ISP  + + + +T + L  N
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  168 bits (427), Expect = 6e-45
 Identities = 94/519 (18%), Positives = 173/519 (33%), Gaps = 54/519 (10%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
                L LS N +  +       L+ L  L L+   +  +    F     L+ L++S N+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDN-VFANNTWLRNLNLAENELIDLDVATT 182
           L++     +    +  L  LDL  +    LP    F N T L  L L+  +   LD+   
Sbjct: 112 LQN-----ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH- 241
              +L  +  LDL + H+KG  +E   +  T +  L    N L +  +++++  L  L  
Sbjct: 167 AHLHLSCI-LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 242 ---RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA-FTALLSPLE--SLEHLDMGY 295
              +L+  NC       +   R   L  + + H          L        +E+L++  
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 296 SNLQRI-----SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
             +           +   + SL    +        +  L+     +++  L+      ++
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 351 ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN---- 406
                   +      L  + N                      +    L  L  L     
Sbjct: 346 MVCPP---SPSSFTFLNFTQNVFTDSVF---------------QGCSTLKRLQTLILQRN 387

Query: 407 --ETVFHENYTYPDLEELRLSGNPLHVLPTG--NLLPPQLSRLRSLDLSRCKIDYLPPNV 462
             +  F       ++  L      L+ L +   +        +  L+LS      L  +V
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSV 444

Query: 463 FNN-TRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
           F      +  L+L NN +     +       L  L+ L++++N L  +   V     ++ 
Sbjct: 445 FRCLPPKVKVLDLHNNRI---MSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 522 SIKLVGNPWKCDCN-IADMWEWATREKGDIGVLVGSTTP 559
            I L  NPW C C  I  + EW  +  G +    GS  P
Sbjct: 501 YIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 539

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  135 bits (342), Expect = 8e-34
 Identities = 80/468 (17%), Positives = 148/468 (31%), Gaps = 53/468 (11%)

Query: 23  NLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII-E 80
            L+ N I+ +    FL  + L YL +    L  I+     +L     LDLS N   ++  
Sbjct: 82  RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLR---HLDLSFNDFDVLPV 138

Query: 81  PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLN-HLKTLELSQNKLKSHIDWTLVLGNLGK 139
              F  LT L +L L+      +      +L+     L+L    +K     +L + N   
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198

Query: 140 LDTLDLRQSGISNLPDNVFANNTWL--RNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
           L  +    S  S   +        L   N+ L +     L    +       L ++ L +
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258

Query: 198 CHLKGPLSED--AFVNATKLRTLYLSGNPLSA----ADLSVALKPLTKLHRLSLRNCGLS 251
                  S     F     +  L +    ++      + + +   L  L    ++N    
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318

Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
                 +  F  +    +S +              S   L+   +            +  
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD-LEELRLSG 370
           L+TLIL  N L+     +     ++S LE  +  L  LN   +     + + +  L LS 
Sbjct: 379 LQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 371 NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
           N L                      F  L                 P ++ L L  N + 
Sbjct: 438 NMLTGSV------------------FRCLP----------------PKVKVLDLHNNRIM 463

Query: 431 VLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
            +P        L  L+ L+++  ++  +P  VF+   ++  + L +N 
Sbjct: 464 SIPKDVT---HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 52/355 (14%), Positives = 111/355 (31%), Gaps = 54/355 (15%)

Query: 9   NDRRNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTN----- 62
            +  +L  P    ++L  +P         +   +L +L +    L+  N Q         
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 63  -----LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI-----SPSAFDNLN 112
                L  +    +       ++   F     +EYL +    +T          +   L 
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
            L    +         +   +     +++   L  S    +      + +    LN  +N
Sbjct: 306 SLMIEHVKNQVFLFSKEA--LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
              D                                     +L+TL L  N L       
Sbjct: 364 VFTD---------------------------SVFQGCSTLKRLQTLILQRNGLKN--FFK 394

Query: 233 ALKPLTKLHRLSLRNCGLSRLPANTFHRFTC----LQELDISHNPLIDAFTALLSPLESL 288
                  +  L   +  L+ L ++ + R       +  L++S N L  +    L P   +
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KV 452

Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
           + LD+  + +  I +     + +L+ L ++ N+L+++  G+F  LT L  + L++
Sbjct: 453 KVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.9 bits (197), Expect = 8e-16
 Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 12/210 (5%)

Query: 19  LITINLNANPIQ-PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
           L+  ++         E  + V   +    +       I+     + ++   L+ + N   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 78  IIEPGVFDPLTSLEYLMLNRCNLTYISPSAF--DNLNHLKTLELSQNKLKSHIDWTLVLG 135
                    L  L+ L+L R  L      A    N++ L+TL++S N L SH        
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-A 425

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTW-LRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
               +  L+L     + L  +VF      ++ L+L  N ++ +    T   +L  L  L+
Sbjct: 426 WAESILVLNLSS---NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT---HLQALQELN 479

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
           +++  LK  + +  F   T L+ ++L  NP
Sbjct: 480 VASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  161 bits (410), Expect = 8e-45
 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 5/236 (2%)

Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCH 199
              L+L  + + +LP  VF   T L  L+L+ N L      +        L  LDLS   
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 200 LKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH 259
           +        F+   +L  L    + L           L  L  L + +          F+
Sbjct: 90  VIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 260 RFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318
             + L+ L ++ N   + F   + + L +L  LD+    L+++S + F  ++SL+ L +S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
            N   +L++  ++ L  L VL+ +   +    +       +   L  L L+ N   
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS--SLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  155 bits (395), Expect = 9e-43
 Identities = 67/315 (21%), Positives = 116/315 (36%), Gaps = 49/315 (15%)

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
            +   + GL+ +P            L++  N L      +   L  L  L +  + L   
Sbjct: 11  EIRCNSKGLTSVPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 302 S--RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNET-VFHENY 358
                +    TSLK L LS N + T+ S  F  L  L  L+  +  L +++E  VF    
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL- 125

Query: 359 TYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPD 418
              +L  L +S     V  +                 F+ L                   
Sbjct: 126 --RNLIYLDISHTHTRVAFNGI---------------FNGL-----------------SS 151

Query: 419 LEELRLSGNP-LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
           LE L+++GN               L  L  LDLS+C+++ L P  FN+  ++  LN+++N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTE--LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209

Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRH-NRAITSIKLVGNPWKCDCNI 536
           N        ++ L+    L+ LD S N++       L+H   ++  + L  N + C C  
Sbjct: 210 NFFSLDTFPYKCLN---SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266

Query: 537 ADMWEWATREKGDIG 551
               +W   ++  + 
Sbjct: 267 QSFLQWIKDQRQLLV 281

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  154 bits (390), Expect = 5e-42
 Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 8/237 (3%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE--PGVFDPLTSLEYLMLNRC 98
           S   L ++   L  +    F  LT L KL LS N L             TSL+YL L+  
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 99  NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF 158
            +  +  S F  L  L+ L+   + LK   +++ V  +L  L  LD+  +      + +F
Sbjct: 89  GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 159 ANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTL 218
              + L  L +A N   +  +       L +L  LDLS C L+  LS  AF + + L+ L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVL 204

Query: 219 YLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF-HRFTCLQELDISHNPL 274
            +S N   + D     K L  L  L      +         H  + L  L+++ N  
Sbjct: 205 NMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  135 bits (342), Expect = 1e-35
 Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 10/215 (4%)

Query: 17  PGLITINLNANPIQPVE---GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSG 73
             L  ++L++N +        +     SL YL +    +  +    F  L  L  LD   
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQH 110

Query: 74  NPL-RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
           + L ++ E  VF  L +L YL ++  +        F+ L+ L+ L+++ N  + +    +
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
               L  L  LDL Q  +  L    F + + L+ LN++ N    LD      + L  L  
Sbjct: 171 -FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQV 227

Query: 193 LDLSNCHLKGPLSEDAFVN-ATKLRTLYLSGNPLS 226
           LD S  H+     +    +  + L  L L+ N  +
Sbjct: 228 LDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFA 261

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  162 bits (412), Expect = 1e-44
 Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 33/360 (9%)

Query: 18  GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
           G  T+     PI  +          +   +Q+ +++ +       L ++ KL ++G  + 
Sbjct: 1   GAATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 78  IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNL 137
            I+    + LT+LEYL LN   +T ISP    NL  L  L +  NK+   I     L NL
Sbjct: 58  SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS---ALQNL 109

Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
             L  L L +  IS++     AN T + +LNL  N  +     + L  N+  L+ L ++ 
Sbjct: 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD--LSPLS-NMTGLNYLTVTE 164

Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257
             +K         N T L +L L+ N +   D+S  L  LT LH  +     ++ +    
Sbjct: 165 SKVKDV---TPIANLTDLYSLSLNYNQIE--DIS-PLASLTSLHYFTAYVNQITDITP-- 216

Query: 258 FHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL 317
               T L  L I +N + D   + L+ L  L  L++G + +  I  +    +T LK L +
Sbjct: 217 VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV 272

Query: 318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
             N++  +      NL+ L+ L LNN  L   +  V        +L  L LS N +  + 
Sbjct: 273 GSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGL---TNLTTLFLSQNHITDIR 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  156 bits (397), Expect = 1e-42
 Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 32/332 (9%)

Query: 19  LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
           +  + +    +  ++G      +L YL +    ++ I+P   +NL  L  L +  N +  
Sbjct: 46  ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD 102

Query: 79  IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
           I       LT+L  L LN  N++ ISP    NL  + +L L  N   S +     L N+ 
Sbjct: 103 ISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS---PLSNMT 155

Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
            L+ L + +S + ++     AN T L +L+L  N++ D+     L  +L  L        
Sbjct: 156 GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS---PLA-SLTSLHYFTAYVN 209

Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF 258
            +          N T+L +L +  N ++  DLS  L  L++L  L +    +S + A   
Sbjct: 210 QITDI---TPVANMTRLNSLKIGNNKIT--DLS-PLANLSQLTWLEIGTNQISDINA--V 261

Query: 259 HRFTCLQELDISHNPL--IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
              T L+ L++  N +  I       + L  L  L +  + L          +T+L TL 
Sbjct: 262 KDLTKLKMLNVGSNQISDISVL----NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
           LS N +  +      +L+ +   +  N  + +
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  150 bits (381), Expect = 2e-40
 Identities = 84/442 (19%), Positives = 157/442 (35%), Gaps = 97/442 (21%)

Query: 66  LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
              L     P+  I P     L      +L + ++T +     + L  +  L ++  K+ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
           S       +  L  L+ L+L  + I+++     +N   L NL +  N++ D+       Q
Sbjct: 58  SIQG----IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA----LQ 107

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
           NL +L  L L+  ++          N TK+ +L L  N   +      L  +T L+ L++
Sbjct: 108 NLTNLRELYLNEDNISDI---SPLANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLTV 162

Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
               +  +        T L  L +++N + D     +SPL SL                 
Sbjct: 163 TESKVKDVTP--IANLTDLYSLSLNYNQIED-----ISPLASL----------------- 198

Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEE 365
               TSL       N++  +      N+T L+ L++ N  +T L+            L  
Sbjct: 199 ----TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQ-----LTW 247

Query: 366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLS 425
           L +  N +  +                      L                   L+ L + 
Sbjct: 248 LEIGTNQISDIN-----------------AVKDL-----------------TKLKMLNVG 273

Query: 426 GNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSEL 485
            N +  +   N     LS+L SL L+  ++      V     N+T+L L+ N+++     
Sbjct: 274 SNQISDISVLN----NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT----- 324

Query: 486 SFQFLDVLLELESLDLSNNNLT 507
             + L  L +++S D +N  + 
Sbjct: 325 DIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (350), Expect = 4e-36
 Identities = 75/416 (18%), Positives = 142/416 (34%), Gaps = 73/416 (17%)

Query: 114 LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE 173
             TL      +           +L +     L+++ ++++          +  L +A  +
Sbjct: 2   AATLATLPAPINQIFP----DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK 55

Query: 174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA 233
           +  +       + L +L+ L+L+   +          N  KL  LY+  N ++  D+S A
Sbjct: 56  VASIQGI----EYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKIT--DIS-A 105

Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
           L+ LT L  L L    +S +        T +  L++  N  +   + L S +  L +L +
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPL-SNMTGLNYLTV 162

Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353
             S ++ ++      +T L +L L+ N++E +      +LT L         +T +    
Sbjct: 163 TESKVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-- 216

Query: 354 FHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN 413
                    L  L++  N +  L                      L              
Sbjct: 217 VANM---TRLNSLKIGNNKITDLS-----------------PLANL-------------- 242

Query: 414 YTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLN 473
                L  L +  N +  +         L++L+ L++   +I  +     NN   + SL 
Sbjct: 243 ---SQLTWLEIGTNQISDINAVK----DLTKLKMLNVGSNQISDISV--LNNLSQLNSLF 293

Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
           L NN L          L     L +L LS N++T I P  L     + S       
Sbjct: 294 LNNNQLGNEDMEVIGGLT---NLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (339), Expect = 1e-34
 Identities = 65/307 (21%), Positives = 130/307 (42%), Gaps = 26/307 (8%)

Query: 17  PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
             L  +NLN N I  +         L  LY+    ++ I+     NLT L +L L+ + +
Sbjct: 66  TNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNI 122

Query: 77  RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
             I P     LT +  L L   +      S   N+  L  L ++++K+   +     + N
Sbjct: 123 SDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKV-KDVT---PIAN 175

Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
           L  L +L L  + I ++     A+ T L       N++ D+     +  N+  L+SL + 
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VA-NMTRLNSLKIG 229

Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
           N  +          N ++L  L +  N +S  D++ A+K LTKL  L++ +  +S +   
Sbjct: 230 NNKITDL---SPLANLSQLTWLEIGTNQIS--DIN-AVKDLTKLKMLNVGSNQISDISV- 282

Query: 257 TFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
             +  + L  L +++N L +    ++  L +L  L +  +++  I       ++ + +  
Sbjct: 283 -LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSAD 339

Query: 317 LSGNKLE 323
            +   ++
Sbjct: 340 FANQVIK 346

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  162 bits (411), Expect = 1e-43
 Identities = 63/305 (20%), Positives = 111/305 (36%), Gaps = 46/305 (15%)

Query: 239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL 298
           +  ++      L  +P          + L++  N +          L  LE L +  +++
Sbjct: 44  QFSKVICVRKNLREVPDGISTN---TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
           + I    F  + +L TL L  N+L T+ +G F  L+ L  L L N  +  +    F+   
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-- 158

Query: 359 TYPDLEELRLSG-NPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYP 417
             P L  L L     L  + +                 F+ L                  
Sbjct: 159 -IPSLRRLDLGELKRLSYISEGA---------------FEGL-----------------S 185

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
           +L  L L+   L  +P        L +L  LDLS   +  + P  F    ++  L +  +
Sbjct: 186 NLRYLNLAMCNLREIPNLT----PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIA 537
            + +    +F  L     L  ++L++NNLT +   +      +  I L  NPW C+C+I 
Sbjct: 242 QIQVIERNAFDNLQ---SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298

Query: 538 DMWEW 542
            +  W
Sbjct: 299 WLSWW 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  156 bits (397), Expect = 8e-42
 Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 32/259 (12%)

Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
                +NL+ N IQ ++  +F   R L  L +    +  I    F  L  LN L+L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           L  I  G F  L+ L+ L L    +  I   AF+ +  L+ L+L + K            
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR----------- 172

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
                         +S + +  F   + LR LNLA   L ++         L+ LD LDL
Sbjct: 173 --------------LSYISEGAFEGLSNLRYLNLAMCNLREIPN----LTPLIKLDELDL 214

Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
           S  HL   +   +F     L+ L++  + +   + + A   L  L  ++L +  L+ LP 
Sbjct: 215 SGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHNNLTLLPH 272

Query: 256 NTFHRFTCLQELDISHNPL 274
           + F     L+ + + HNP 
Sbjct: 273 DLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  148 bits (376), Expect = 7e-39
 Identities = 74/294 (25%), Positives = 116/294 (39%), Gaps = 45/294 (15%)

Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
            +   +   +  +  +PD +  N    R LNL EN++  + V +   ++L HL+ L LS 
Sbjct: 43  NQFSKVICVRKNLREVPDGISTN---TRLLNLHENQIQIIKVNSF--KHLRHLEILQLSR 97

Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT 257
            H++  +   AF     L TL L  N L+    + A   L+KL  L LRN  +  +P+  
Sbjct: 98  NHIRT-IEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYA 155

Query: 258 FHRFTCLQELDISHNPLIDAFTA-LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
           F+R   L+ LD+     +   +      L +L +L++   NL+ I       +  L  L 
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELD 213

Query: 317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL 376
           LSGN L  +  G FQ L HL  L +    +  +    F        L E+ L+ N L +L
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL---QSLVEINLAHNNLTLL 270

Query: 377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH 430
           P                  F  L                   LE + L  NP +
Sbjct: 271 PHDL---------------FTPL-----------------HHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
           ++   +   R  +  +P  +  NT     LNL  N + +    SF+ L     LE L LS
Sbjct: 43  NQFSKVICVRKNLREVPDGISTNT---RLLNLHENQIQIIKVNSFKHLR---HLEILQLS 96

Query: 503 NNNLTHISPTVLRHNRAITSIKLVGN 528
            N++  I          + +++L  N
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDN 122

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
             L  + +  + IQ +E  AF   +SL+ + +    L+ +    FT L  L ++ L  NP
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

Query: 76  LR 77
             
Sbjct: 291 WN 292

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  155 bits (395), Expect = 6e-43
 Identities = 60/263 (22%), Positives = 95/263 (36%), Gaps = 41/263 (15%)

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCG 345
           + + + +  + +  +  ++F    +L  L L  N L  +++  F  L  L  L+L +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 346 LTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFIL 405
           L  ++   FH       L  L L    L  L                   F  L      
Sbjct: 93  LRSVDPATFHGL---GRLHTLHLDRCGLQELGPGL---------------FRGL------ 128

Query: 406 NETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNN 465
                        L+ L L  N L  LP        L  L  L L   +I  +P   F  
Sbjct: 129 -----------AALQYLYLQDNALQALPDDTFRD--LGNLTHLFLHGNRISSVPERAFRG 175

Query: 466 TRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKL 525
             ++  L L  N ++     +F+ L     L +L L  NNL+ +    L   RA+  ++L
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLG---RLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 526 VGNPWKCDCNIADMWEWATREKG 548
             NPW CDC    +W W  + +G
Sbjct: 233 NDNPWVCDCRARPLWAWLQKFRG 255

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  143 bits (363), Expect = 2e-38
 Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 7/211 (3%)

Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
                I L+ N I  V   +F   R+L  L++    L++I+   FT L  L +LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 76  -LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
            LR ++P  F  L  L  L L+RC L  + P  F  L  L+ L L  N L   +      
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDD-TF 149

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
            +LG L  L L  + IS++P+  F     L  L L +N +  +       ++L  L +L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF--RDLGRLMTLY 207

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
           L   +L   L  +A      L+ L L+ NP 
Sbjct: 208 LFANNLSA-LPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  143 bits (363), Expect = 2e-38
 Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 5/211 (2%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
               ++ L GN +  +    F    +L  L L+   L  I  +AF  L  L+ L+LS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
               +D       LG+L TL L + G+  L   +F     L+ L L +N L  L   T  
Sbjct: 92  QLRSVDPA-TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF- 149

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
            ++L +L  L L    +   + E AF     L  L L  N ++      A + L +L  L
Sbjct: 150 -RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTL 206

Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
            L    LS LP         LQ L ++ NP 
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  131 bits (332), Expect = 2e-34
 Identities = 54/242 (22%), Positives = 85/242 (35%), Gaps = 38/242 (15%)

Query: 190 LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL-RNC 248
              + L    +   +   +F     L  L+L  N L+  D + A   L  L +L L  N 
Sbjct: 34  SQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNA 91

Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK 308
            L  +   TFH    L  L +    L +    L   L +L++L +  + LQ +   TF  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 309 MTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
           + +L  L L GN++ ++    F+ L  L  L L+   +  ++   F +      L  L L
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL---GRLMTLYL 208

Query: 369 SGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNP 428
             N L  LP                     L                   L+ LRL+ NP
Sbjct: 209 FANNLSALPTEA---------------LAPL-----------------RALQYLRLNDNP 236

Query: 429 LH 430
             
Sbjct: 237 WV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
              + + L GN +  +P  +        L  L L    +  +    F     +  L+L++
Sbjct: 32  AASQRIFLHGNRISHVPAASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
           N       +       L  L +L L    L  + P + R   A+  + L  N
Sbjct: 90  NAQL--RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
               +    +  +  +P  +   +     + L  N +S     SF+       L  L L 
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACR---NLTILWLH 64

Query: 503 NNNLTHISPTVLRHNRAITSIKLVGNP 529
           +N L  I          +  + L  N 
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNA 91

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  151 bits (384), Expect = 4e-41
 Identities = 47/288 (16%), Positives = 98/288 (34%), Gaps = 20/288 (6%)

Query: 57  PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
            +   N        ++ + L+     +     +++ L L+   L+ IS +       L+ 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
           L LS N L   +D    L +L  L TLDL  + +  L          +  L+ A N +  
Sbjct: 63  LNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISR 113

Query: 177 LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKP 236
           +  +           ++ L+N  +   L +      ++++ L L  N +   + +     
Sbjct: 114 VSCSR-----GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 237 LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
              L  L+L+   +  +       F  L+ LD+S N  +            +  + +  +
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN 224

Query: 297 NLQRISRSTFLKMTSLKTLILSGNKLETL-ESGLFQNLTHLSVLELNN 343
            L  I ++      +L+   L GN          F     +  +    
Sbjct: 225 KLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  145 bits (369), Expect = 4e-39
 Identities = 61/306 (19%), Positives = 111/306 (36%), Gaps = 20/306 (6%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
                  + + +L +       +   + +LDLSGNPL  I      P T LE L L+   
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
           L        ++L+ L+TL+L+ N ++        L     ++TL    + IS +  +   
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
                +N+ LA N++  L            +  LDL    +      +   ++  L  L 
Sbjct: 121 G---KKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT 279
           L  N +             KL  L L +  L+ +    F     +  + + +N L+    
Sbjct: 176 LQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IE 230

Query: 280 ALLSPLESLEHLDMGYSNLQRIS-RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSV 338
             L   ++LEH D+  +     + R  F K   ++T+     K  T ++     +  L  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 339 LELNNC 344
                C
Sbjct: 291 YGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (338), Expect = 7e-35
 Identities = 51/377 (13%), Positives = 113/377 (29%), Gaps = 65/377 (17%)

Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
           +  N  +     +  S +     ++  +   ++ L+L+ N L  +  A         L+ 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL--APFTKLEL 62

Query: 193 LDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSR 252
           L+LS+  L   L      + + LRTL L+ N +        L     +  L   N  +SR
Sbjct: 63  LNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISR 113

Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL-KMTS 311
           +  +        + + +++N +             +++LD+  + +  ++ +       +
Sbjct: 114 VSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
           L+ L L  N +  ++  +      L  L+L++  L  +             +  + L  N
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSA----AGVTWISLRNN 224

Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
            L ++  +                  F                   +LE   L GN  H 
Sbjct: 225 KLVLIEKA----------------LRFS-----------------QNLEHFDLRGNGFHC 251

Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD 491
                        LR       ++  +                    L        + L 
Sbjct: 252 GT-----------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 492 VLLELESLDLSNNNLTH 508
                  + L +++  H
Sbjct: 301 APFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (337), Expect = 1e-34
 Identities = 59/311 (18%), Positives = 109/311 (35%), Gaps = 54/311 (17%)

Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
           +   N  + +   ++ + L  A  S   +    +  L L    LS++ A     FT L+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 267 LDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE 326
           L++S N L +     L  L +L  LD+  + +Q +         S++TL  + N +  + 
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVS 115

Query: 327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMR 386
               Q   ++    L N  +T L +           ++ L L  N +  +  +    S  
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEG---CRSRVQYLDLKLNEIDTVNFAELAASS- 168

Query: 387 TIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR 446
                                           LE L L  N ++ +          ++L+
Sbjct: 169 ------------------------------DTLEHLNLQYNFIYDVKGQ----VVFAKLK 194

Query: 447 SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNL 506
           +LDLS  K+ ++ P  F +   +T ++L NN L +  +     L     LE  DL  N  
Sbjct: 195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDLRGNGF 249

Query: 507 THISPTVLRHN 517
              +       
Sbjct: 250 HCGTLRDFFSK 260

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (334), Expect = 2e-34
 Identities = 55/332 (16%), Positives = 112/332 (33%), Gaps = 25/332 (7%)

Query: 12  RNLDNPGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
           +N +        +  + ++         A ++  L +    LS+I+       T L  L+
Sbjct: 7   QNGNR--YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 71  LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
           LS N L        + L++L  L LN   +  +          ++TL  + N +      
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR---- 113

Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHL 190
            +          + L  + I+ L D      + ++ L+L  NE+  ++ A     +   L
Sbjct: 114 -VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTL 171

Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
           + L+L    +   +         KL+TL LS N L+   +    +    +  +SLRN  L
Sbjct: 172 EHLNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKL 226

Query: 251 SRLPANTFHRFTCLQELDISHNPL-IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
             +          L+  D+  N           S  + ++ +      +++++     + 
Sbjct: 227 VLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEEC 283

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
           T            E L +     L  L     
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 1e-28
 Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 75/294 (25%)

Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
            +   ++ + L  A  +L     +++ LD+  + L +IS +     T L+ L LS N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQY 383
                  ++L+ L  L+LNN  +  L           P +E L  + N +          
Sbjct: 72  ETLD--LESLSTLRTLDLNNNYVQELLVG--------PSIETLHAANNNI---------- 111

Query: 384 SMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS 443
               +     +                         + + L+ N + +L   +      S
Sbjct: 112 --SRVSCSRGQG-----------------------KKNIYLANNKITMLRDLDEG--CRS 144

Query: 444 RLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
           R++ LDL   +ID +    +  ++  +  LNL  N +               +L++LDLS
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----FAKLKTLDLS 199

Query: 503 NNNLTHISPTV----------LRHNR------------AITSIKLVGNPWKCDC 534
           +N L  + P            LR+N+             +    L GN + C  
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (266), Expect = 2e-25
 Identities = 38/248 (15%), Positives = 71/248 (28%), Gaps = 59/248 (23%)

Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
               +   +  S+L++   S      ++K L LSGN L  + +      T L +L L++ 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
            L    +           L  L L+ N +  L                            
Sbjct: 69  VLYETLD--LESL---STLRTLDLNNNYVQELLVGPS----------------------- 100

Query: 405 LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFN 464
                         +E L  + N +  +             +++ L+  KI  L      
Sbjct: 101 --------------IETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEG 141

Query: 465 NTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV---------LR 515
               +  L+L  N +   +            LE L+L  N +  +   V         L 
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAE--LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199

Query: 516 HNRAITSI 523
            N+ +  +
Sbjct: 200 SNK-LAFM 206

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 29/226 (12%), Positives = 61/226 (26%), Gaps = 74/226 (32%)

Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
                     K   ++ + L+   + L Q+  ++  L+L+   L++++         +  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP---FTK 59

Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL 422
           LE L LS N L+   D                  + L                   L  L
Sbjct: 60  LELLNLSSNVLYETLD-----------------LESL-----------------STLRTL 85

Query: 423 RLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT 482
            L+ N +  L            + +L  +   I  +  +                     
Sbjct: 86  DLNNNYVQELL-------VGPSIETLHAANNNISRVSCSRGQG----------------- 121

Query: 483 SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
                         +++ L+NN +T +          +  + L  N
Sbjct: 122 -------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  156 bits (397), Expect = 5e-40
 Identities = 104/482 (21%), Positives = 189/482 (39%), Gaps = 49/482 (10%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDP--LTSLEYLMLNR 97
            +L +L +    LS    +  +  T L  L++S N       G   P  L SL+YL L  
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV----GPIPPLPLKSLQYLSLAE 278

Query: 98  CNLT-YISPSAFDNLNHLKTLELSQNKLKSHI-DWTLVLGNLGKLDTLDLRQSGIS-NLP 154
              T  I        + L  L+LS N     +  +    G+   L++L L  +  S  LP
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF---FGSCSLLESLALSSNNFSGELP 335

Query: 155 DNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPL-SEDAFVNAT 213
            +       L+ L+L+ NE    ++  +L      L +LDLS+ +  GP+          
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSG-ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHN 272
            L+ LYL  N  +   +   L   ++L  L L    LS  +P ++    + L++L +  N
Sbjct: 395 TLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLN 452

Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLETLESGLF- 330
            L       L  +++LE L + +++L   I        T+L  + LS N+L    +G   
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRL----TGEIP 507

Query: 331 ---QNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRT 387
                L +L++L+L+N      +  +  E      L  L L+ N  +            T
Sbjct: 508 KWIGRLENLAILKLSNN---SFSGNIPAELGDCRSLIWLDLNTNLFN-----------GT 553

Query: 388 IPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRS 447
           IP  ++K     +    +    +         +E   +GN L      +    +LS    
Sbjct: 554 IPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 448 LDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS--MTSELSFQFLDVLLELESLDLSNNN 505
            +++           F+N  ++  L+++ N LS  +  E+       +  L  L+L +N+
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-----MPYLFILNLGHND 667

Query: 506 LT 507
           ++
Sbjct: 668 IS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  156 bits (396), Expect = 6e-40
 Identities = 100/467 (21%), Positives = 162/467 (34%), Gaps = 56/467 (11%)

Query: 62  NLTTLNKLDLSGNPLRIIE---PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE 118
               +  +DLS  PL +           LT LE L L+  ++       F     L +L+
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 119 LSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTWLRNLNLAENELI-D 176
           LS+N L   +     LG+   L  L++  + +      +       L  L+L+ N +   
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 177 LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKP 236
             V   L      L  L +S   + G +          L  L +S N  S     +    
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGD-- 221

Query: 237 LTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY 295
            + L  L +    LS           T L+ L+IS N  +        PL+SL++L +  
Sbjct: 222 CSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAE 278

Query: 296 SNLQ-RISRSTFLKMTSLKTLILSGNKLE-TLESGLFQNLTHLSVLELNNCGLT-RLNET 352
           +     I         +L  L LSGN     +      + + L  L L++   +  L   
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMD 337

Query: 353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI----LNET 408
                     L+ L LS N                +P  +      L+ L +     +  
Sbjct: 338 TLL---KMRGLKVLDLSFNEFS-----------GELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 409 VFHE--NYTYPDLEELRLSGNPLHVLPTGNLLPP---QLSRLRSLDLSRCKID-YLPPNV 462
           +           L+EL L  N      TG  +PP     S L SL LS   +   +P ++
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGF----TGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 463 FNNTRNITSLNLANNNLS--MTSELSFQFLDVLLELESLDLSNNNLT 507
            + +  +  L L  N L   +  EL +     +  LE+L L  N+LT
Sbjct: 439 GSLS-KLRDLKLWLNMLEGEIPQELMY-----VKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  153 bits (389), Expect = 4e-39
 Identities = 119/515 (23%), Positives = 190/515 (36%), Gaps = 77/515 (14%)

Query: 17  PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQF--FTNLTTLNKLDLSGN 74
            GL ++ L+ + I      F  + SL  L +   +LS          + + L  L++S N
Sbjct: 77  TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136

Query: 75  PLRI-IEPGVFDPLTSLEYLMLNRCNLTYISPSAFD---NLNHLKTLELSQNKLKSHIDW 130
            L    +      L SLE L L+  +++  +   +        LK L +S NK+   +D 
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 131 TLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVH 189
              +     L+ LD+  +  S  +P                            LG +   
Sbjct: 196 ---VSRCVNLEFLDVSSNNFSTGIPF---------------------------LG-DCSA 224

Query: 190 LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCG 249
           L  LD+S   L G  S  A    T+L+ L +S N        +   PL  L  LSL    
Sbjct: 225 LQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVG---PIPPLPLKSLQYLSLAENK 280

Query: 250 LS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTFL 307
            +  +P         L  LD+S N    A          LE L +  +N    +   T L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 308 KMTSLKTLILSGNKLE-TLESGLFQNLTHLSVLELNNCGLT-RLNETVFHENYTYPDLEE 365
           KM  LK L LS N+    L   L      L  L+L++   +  +   +         L+E
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC--QNPKNTLQE 398

Query: 366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI----LNETVFHENYTYPDLEE 421
           L L  N                IP  +  N   LV L +    L+ T+     +   L +
Sbjct: 399 LYLQNNGFT-----------GKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 422 LRLSGNPLHVLPTGNLLP--PQLSRLRSLDLSRCKID-YLPPNVFNNTRNITSLNLANNN 478
           L+L  N L     G +      +  L +L L    +   +P  + N T N+  ++L+NN 
Sbjct: 447 LKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNR 501

Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLT-HISPT 512
           L+   E+  +++  L  L  L LSNN+ + +I   
Sbjct: 502 LT--GEIP-KWIGRLENLAILKLSNNSFSGNIPAE 533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  148 bits (377), Expect = 1e-37
 Identities = 105/498 (21%), Positives = 173/498 (34%), Gaps = 44/498 (8%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
            L +L +    +S       +    L  LD+S N      P + D  ++L++L ++   L
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKL 235

Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFA 159
           +     A      LK L +S N+    I        L  L  L L ++  +  +PD +  
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSG 291

Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
               L  L+L+ N      V    G +   L+SL LS+ +  G L  D  +    L+ L 
Sbjct: 292 ACDTLTGLDLSGNHFYG-AVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFH-RFTCLQELDISHNPLIDA 277
           LS N  S             L  L L +   S  +  N        LQEL + +N     
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 278 FTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLE-TLESGLFQNLTH 335
               LS    L  L + ++ L   I  S    ++ L+ L L  N LE  +   L   +  
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELM-YVKT 467

Query: 336 LSVLELNNCGLT-RLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK 394
           L  L L+   LT  +   + +      +L  + LS N L              IP  I  
Sbjct: 468 LETLILDFNDLTGEIPSGLSN----CTNLNWISLSNNRLT-----------GEIPKWIG- 511

Query: 395 NFDFLVILFI----LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDL 450
             + L IL +     +  +  E      L  L L+ N       G + P  + +  S  +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF----NGTI-PAAMFKQ-SGKI 565

Query: 451 SRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
           +   I         N       + A N L      S Q L+ L      ++++      +
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPCNITSRVYGGHT 624

Query: 511 PTVLRHNRAITSIKLVGN 528
                +N ++  + +  N
Sbjct: 625 SPTFDNNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (352), Expect = 2e-34
 Identities = 104/501 (20%), Positives = 168/501 (33%), Gaps = 63/501 (12%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR-IIEPGVFDPLTSLEYLMLNRC 98
             L  L +         P     L +L  L L+ N     I   +     +L  L L+  
Sbjct: 247 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 99  NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNV 157
           +     P  F + + L++L LS N     +     L  +  L  LDL  +  S  LP+++
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 158 FANNTWLRNLNLAENELIDLDVATTLGQN-LVHLDSLDLSNCHLKGPLSEDAFVNATKLR 216
              +  L  L+L+ N      +   L QN    L  L L N    G +      N ++L 
Sbjct: 364 TNLSASLLTLDLSSNNFSG-PILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELV 421

Query: 217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLI 275
           +L+LS N LS   +  +L  L+KL  L L    L   +P         L+ L +  N L 
Sbjct: 422 SLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIP-QELMYVKTLETLILDFNDLT 479

Query: 276 DAFTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLETLESGL----F 330
               + LS   +L  + +  + L   I      ++ +L  L LS N      SG      
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSF----SGNIPAEL 534

Query: 331 QNLTHLSVLELNN--------CGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQ 382
            +   L  L+LN           + + +  +            ++  G            
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 383 YSMRTIPTQIWKNFDFLVILFI----LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLL 438
                   Q+           I                  +  L +S N L    +G + 
Sbjct: 595 EFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML----SGYI- 648

Query: 439 PP---QLSRLRSLDLSR----CKIDYLPPNVFNNTRNITSLNLANNNLSMT-----SELS 486
           P     +  L  L+L        I    P+   + R +  L+L++N L        S L+
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSI----PDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 487 FQFLDVLLELESLDLSNNNLT 507
                    L  +DLSNNNL+
Sbjct: 705 M--------LTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 5e-08
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 11/163 (6%)

Query: 16  NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
             G I  N  A     V       +   +          I  +    L+T N  +++   
Sbjct: 561 QSGKIAANFIAGKR-YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLT-YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
                   FD   S+ +L ++   L+ YI P    ++ +L  L L  N +   I     +
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDE--V 676

Query: 135 GNLGKLDTLDL---RQSGISNLPDNVFANNTWLRNLNLAENEL 174
           G+L  L+ LDL   +  G   +P    +  T L  ++L+ N L
Sbjct: 677 GDLRGLNILDLSSNKLDG--RIPQA-MSALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 7e-08
 Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI--IEPGVFDPLTSLEYLMLNRC 98
                 +    ++     +  N     +   +GN L    I     + L++     +   
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618

Query: 99  NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNV 157
                +   FDN   +  L++S N L  +I     +G++  L  L+L  + IS ++PD  
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDE- 675

Query: 158 FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPL 204
             +   L  L+L+ N+L    +   +   L  L  +DLSN +L GP+
Sbjct: 676 VGDLRGLNILDLSSNKLDG-RIPQAMS-ALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 5e-06
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 417 PDLEELRLSGNPLHVLPTGNLLP-PQLSRLRSLDLSRCKI-DYLPPNV-FNNTRNITSLN 473
             LE L LS + +     G++      + L SLDLSR  +   +       +   +  LN
Sbjct: 77  TGLESLFLSNSHI----NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIK 524
           +++N L    ++S      L  LE LDLS N+++  +      +     +K
Sbjct: 133 VSSNTLDFPGKVSGGLK--LNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  146 bits (371), Expect = 9e-40
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 10/214 (4%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
            +   LDLS NPLR +    F     L+ L L+RC +  I   A+ +L+HL TL L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
           ++S +        L  L  L   ++ +++L +    +   L+ LN+A N +    +    
Sbjct: 88  IQS-LALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR----TLYLSGNPLSAADLSVALKPLTK 239
             NL +L+ LDLS+  ++  +         ++     +L LS NP++   +        +
Sbjct: 146 -SNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIR 201

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
           L  L+L    L  +P   F R T LQ++ +  NP
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  135 bits (341), Expect = 1e-35
 Identities = 57/261 (21%), Positives = 97/261 (37%), Gaps = 45/261 (17%)

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
           S ++LD+ ++ L+ +   +F     L+ L LS  +++T+E G +Q+L+HLS L L    +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
             L    F        L++L      L  L +                    L       
Sbjct: 89  QSLALGAFSG---LSSLQKLVAVETNLASLENFP---------------IGHL------- 123

Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT 466
                       L+EL ++ N +            L+ L  LDLS  KI  +        
Sbjct: 124 ----------KTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 467 RNIT----SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITS 522
             +     SL+L+ N ++     +F+     + L+ L L  N L  +   +     ++  
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFK----EIRLKELALDTNQLKSVPDGIFDRLTSLQK 228

Query: 523 IKLVGNPWKCDCNIAD-MWEW 542
           I L  NPW C C   D +  W
Sbjct: 229 IWLHTNPWDCSCPRIDYLSRW 249

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  129 bits (327), Expect = 8e-34
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 10/207 (4%)

Query: 23  NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
           +L+ NP++ +   +F     L  L +  C +  I    + +L+ L+ L L+GNP++ +  
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 82  GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD 141
           G F  L+SL+ L+    NL  +      +L  LK L ++ N ++S         NL  L+
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLE 152

Query: 142 TLDLRQSGISNLPDNVFANNTWLR----NLNLAENELIDLDVATTLGQNLVHLDSLDLSN 197
            LDL  + I ++          +     +L+L+ N +  +         L     L L  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE---LALDT 209

Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNP 224
             LK  + +  F   T L+ ++L  NP
Sbjct: 210 NQLKS-VPDGIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  106 bits (266), Expect = 1e-25
 Identities = 52/266 (19%), Positives = 92/266 (34%), Gaps = 60/266 (22%)

Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
              + L LS NPL     S +     +L  L L  C +  +    +   + L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES-GLFQ 331
           P+        S L SL+ L    +NL  +       + +LK L ++ N +++ +    F 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 332 NLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQ 391
           NLT+                           LE L LS N +  +  +            
Sbjct: 147 NLTN---------------------------LEHLDLSSNKIQSIYCTD----------- 168

Query: 392 IWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLS 451
                  L  + +LN               L LS NP++ +  G     +   L+ L L 
Sbjct: 169 ----LRVLHQMPLLN-------------LSLDLSLNPMNFIQPGAFKEIR---LKELALD 208

Query: 452 RCKIDYLPPNVFNNTRNITSLNLANN 477
             ++  +P  +F+   ++  + L  N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 17/122 (13%)

Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN 476
              + L LS NPL  L + +        L+ LDLSRC+I  +    + +  ++++L L  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV-----------LRHNRAITSIKL 525
           N +   +  +F     L  L+ L     NL  +               + HN  I S KL
Sbjct: 86  NPIQSLALGAF---SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKL 141

Query: 526 VG 527
             
Sbjct: 142 PE 143

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  147 bits (374), Expect = 2e-38
 Identities = 88/492 (17%), Positives = 151/492 (30%), Gaps = 86/492 (17%)

Query: 42  LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
                     +   +      L TL  LD   + +  +     + LT L  L+    N+T
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77

Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN 161
            +  S      +L  L    NKL +     L +  L KL  L+   + ++ L     + N
Sbjct: 78  TLDLS---QNTNLTYLACDSNKLTN-----LDVTPLTKLTYLNCDTNKLTKLD---VSQN 126

Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS 221
             L  LN A N L ++DV+     +   L  LD         +++      T+L TL  S
Sbjct: 127 PLLTYLNCARNTLTEIDVS-----HNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCS 178

Query: 222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL 281
            N ++  D+S        L+RL+     +++L     ++   L  LD S N L       
Sbjct: 179 FNKITELDVS----QNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT---EID 228

Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
           ++PL  L + D   + L  +  ST    + L TL      L  ++      L +      
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285

Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
                  + E     N     L  L      +  L  S                      
Sbjct: 286 RK-----IKELDVTHN---TQLYLLDCQAAGITELDLSQ--------------------- 316

Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
                          P L  L L+   L  L   +      ++L+SL      I      
Sbjct: 317 --------------NPKLVYLYLNNTELTELDVSHN-----TKLKSLSCVNAHIQDFSS- 356

Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQF--LDVLLELESLDLSNNNLTHISPTVLRHNRA 519
                  + +   A        + +     L + +  + LD   N +         +++A
Sbjct: 357 -VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQA 415

Query: 520 ITSIKLVGNPWK 531
             +I        
Sbjct: 416 TNTITWENLSTD 427

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  139 bits (352), Expect = 1e-35
 Identities = 74/443 (16%), Positives = 135/443 (30%), Gaps = 69/443 (15%)

Query: 86  PLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
           P  +    +     +      + + L  L +L+   + +         +  L  L  L  
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG----IEKLTGLTKLIC 71

Query: 146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS 205
             + I+ L     + NT L  L    N+L +LDV       L  L  L+         L+
Sbjct: 72  TSNNITTLD---LSQNTNLTYLACDSNKLTNLDV-----TPLTKLTYLNCDTNK----LT 119

Query: 206 EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
           +        L  L  + N L+  D+S      T+L  L                  T L 
Sbjct: 120 KLDVSQNPLLTYLNCARNTLTEIDVS----HNTQLTELDCHLNKKITKL--DVTPQTQLT 173

Query: 266 ELDISHNPLIDAFTAL-LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
            LD S N +    T L +S  + L  L+   +N+ ++      +   L  L  S NKL  
Sbjct: 174 TLDCSFNKI----TELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTE 226

Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYS 384
           ++      LT L+  + +   LT L+ +          L  L      L  +  +     
Sbjct: 227 ID---VTPLTQLTYFDCSVNPLTELDVSTL------SKLTTLHCIQTDLLEIDLT----- 272

Query: 385 MRTIPTQIWKNFDFLVILFILNETVFHENYTY--PDLEELRLSGNPLHVLPTGNLLPPQL 442
                     +   L+           E        L  L      +  L          
Sbjct: 273 ----------HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-----N 317

Query: 443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS 502
            +L  L L+  ++  L     ++   + SL+  N ++   S +       +  L +   +
Sbjct: 318 PKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVGK-----IPALNNNFEA 369

Query: 503 NNNLTHISPTVLRHNRAITSIKL 525
                 +    L +N    ++  
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSP 392

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  132 bits (333), Expect = 4e-33
 Identities = 88/476 (18%), Positives = 149/476 (31%), Gaps = 91/476 (19%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
               L +++ + + I  + G       L  L      ++ ++    TNLT    L    N
Sbjct: 40  QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLDLSQNTNLTY---LACDSN 95

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVL 134
            L  ++     PLT L YL  +   LT +  S       L  L  ++N L       + +
Sbjct: 96  KLTNLD---VTPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLTE-----IDV 144

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
            +  +L  LD   +      D      T L  L+ + N++ +LDV+         L+ L+
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVS-----QNKLLNRLN 197

Query: 195 LSNCHLKG-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
               ++    L+        +L  L  S N L+  D++    PLT+L         L+ L
Sbjct: 198 CDTNNITKLDLN-----QNIQLTFLDCSSNKLTEIDVT----PLTQLTYFDCSVNPLTEL 248

Query: 254 PANTFHRFTCLQELDISHNPLIDAFTAL-LSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
             +T    + L  L      L      + L+    L +        ++I        T L
Sbjct: 249 DVST---LSKLTTLHCIQTDL----LEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQL 299

Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
             L      +  L+         L  L LNN  LT L+ +          L+ L      
Sbjct: 300 YLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVSHN------TKLKSLSCVNAH 350

Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
           +       K                                   P L     +      +
Sbjct: 351 IQDFSSVGK----------------------------------IPALNNNFEAEGQTITM 376

Query: 433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNN------TRNITSLNLANNNLSMT 482
           P   L    L+   S DL     + +     +       T  IT  NL+ +N ++T
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  108 bits (272), Expect = 2e-25
 Identities = 72/428 (16%), Positives = 117/428 (27%), Gaps = 102/428 (23%)

Query: 109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLN 168
           DN               +     +    L  L +LD   S I+++        T L  L 
Sbjct: 18  DNFASEVAAAFEMQATDT-----ISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLI 70

Query: 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
              N +  LD++        +L  L   +  L    +       TKL  L    N L+  
Sbjct: 71  CTSNNITTLDLS-----QNTNLTYLACDSNKL----TNLDVTPLTKLTYLNCDTNKLTKL 121

Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
           D+S        L  L+     L+ +        T L ELD   N  I             
Sbjct: 122 DVS----QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITK----------- 163

Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
                                T L TL  S NK+  L+         L+ L  +   +T+
Sbjct: 164 ---------------LDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK 205

Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI---- 404
           L+            L  L  S N L  +  +                   L         
Sbjct: 206 LDLNQN------IQLTFLDCSSNKLTEIDVT---------------PLTQLTYFDCSVNP 244

Query: 405 ---LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
              L+ +          L  L      L  +   +      ++L       C+   +   
Sbjct: 245 LTELDVSTL------SKLTTLHCIQTDLLEIDLTH-----NTQLIYFQAEGCRK--IKEL 291

Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
              +   +  L+     +   +EL         +L  L L+N  LT +    + HN  + 
Sbjct: 292 DVTHNTQLYLLDCQAAGI---TELDLSQ---NPKLVYLYLNNTELTELD---VSHNTKLK 342

Query: 522 SIKLVGNP 529
           S+  V   
Sbjct: 343 SLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 32/229 (13%), Positives = 71/229 (31%), Gaps = 43/229 (18%)

Query: 304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
           + +    +  + + +  +++  ++   + L  L+ L+ +N  +T +             L
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTG-----L 66

Query: 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI----LNETVFHENYTYPDL 419
            +L  + N +  L  S                   L  L      L             L
Sbjct: 67  TKLICTSNNITTLDLS---------------QNTNLTYLACDSNKLTNLDVTPL---TKL 108

Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
             L    N L  L            L  L+ +R  +  +     ++   +T L+   N  
Sbjct: 109 TYLNCDTNKLTKLDVSQ-----NPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK 160

Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
               +++        +L +LD S N +T +    +  N+ +  +    N
Sbjct: 161 ITKLDVTP-----QTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN 201

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  140 bits (354), Expect = 6e-36
 Identities = 82/469 (17%), Positives = 156/469 (33%), Gaps = 81/469 (17%)

Query: 12  RNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDL 71
           R+  +     + LN   +  +         L  L     +L+++ P+   +L +L   + 
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSLTEL-PELPQSLKSLLVDNN 121

Query: 72  SGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWT 131
           +   L  +          LEYL ++   L  +      N + LK +++  N LK      
Sbjct: 122 NLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKK----- 167

Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
            +      L+ +    + +  LP+    N  +L  +    N L        L    + L+
Sbjct: 168 -LPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSL------KKLPDLPLSLE 218

Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
           S+   N  L+         N   L T+Y   N L              L  L++R+  L+
Sbjct: 219 SIVAGNNILEEL---PELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLT 270

Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
            LP         L  LD+S N      + L     +L +L+   + ++ +         S
Sbjct: 271 DLPEL----PQSLTFLDVSENIF----SGLSELPPNLYYLNASSNEIRSLCDL----PPS 318

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
           L+ L +S NKL  L +        L  L  +   L  + E   +       L++L +  N
Sbjct: 319 LEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPELPQN-------LKQLHVEYN 367

Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
           PL   PD  +            ++      L  + E   +       L++L +  NPL  
Sbjct: 368 PLREFPDIPES----------VEDLRMNSHLAEVPELPQN-------LKQLHVETNPLRE 410

Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
            P           +  L ++  ++          T  +      +++  
Sbjct: 411 FP------DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  135 bits (343), Expect = 2e-34
 Identities = 88/469 (18%), Positives = 148/469 (31%), Gaps = 93/469 (19%)

Query: 62  NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
           + T L +     + L  +     + + S              +P        +    L  
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
              +                 L+L   G+S+LP+        L +L  + N L +L    
Sbjct: 68  CLDRQ-------------AHELELNNLGLSSLPELP----PHLESLVASCNSLTELP--- 107

Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
            L Q+L  L   + +   L              L  L +S N L        L+  + L 
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLEKLP---ELQNSSFLK 156

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL--LSPLESLEHLDMGYSNLQ 299
            + + N  L +LP         L+ +   +N L      L  L  L  L  +    ++L+
Sbjct: 157 IIDVDNNSLKKLPDL----PPSLEFIAAGNNQL----EELPELQNLPFLTAIYADNNSLK 208

Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
           ++         SL++++   N LE L     QNL  L+ +  +N  L  L +        
Sbjct: 209 KLPDL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLP------ 256

Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
            P LE L +  N L  LP+  +                 L  L +        +   P+L
Sbjct: 257 -PSLEALNVRDNYLTDLPELPQS----------------LTFLDVSENIFSGLSELPPNL 299

Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
             L  S N +        L      L  L++S  K+  LP         +  L  + N+L
Sbjct: 300 YYLNASSNEI------RSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHL 349

Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISP-----TVLRHNRAITSI 523
           +   EL          L+ L +  N L            LR N  +  +
Sbjct: 350 AEVPEL-------PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  135 bits (341), Expect = 4e-34
 Identities = 91/490 (18%), Positives = 145/490 (29%), Gaps = 105/490 (21%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVF-------------DP 86
             L         L+++  +   N+ +  +   + +      P                  
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 87  LTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLR 146
                 L LN   L+ +         HL++L  S N L        +  +L  L   +  
Sbjct: 70  DRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTE---LPELPQSLKSLLVDNNN 122

Query: 147 QSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE 206
              +S+LP         L  L ++ N+L  L       QN   L  +D+ N  LK     
Sbjct: 123 LKALSDLPPL-------LEYLGVSNNQLEKLPE----LQNSSFLKIIDVDNNSLK----- 166

Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
                   L  +    N L        L+ L  L  +   N  L +LP         L+ 
Sbjct: 167 KLPDLPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKKLPDL----PLSLES 219

Query: 267 LDISHNPLIDAFTAL--LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
           +   +N L      L  L  L  L  +    + L+ +         SL+ L +  N L  
Sbjct: 220 IVAGNNIL----EELPELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTD 271

Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYS 384
           L   L Q+LT L V E    GL+ L           P+L  L  S N +  L D      
Sbjct: 272 LPE-LPQSLTFLDVSENIFSGLSELP----------PNLYYLNASSNEIRSLCDLPPS-- 318

Query: 385 MRTIPTQIWKNFDFLVILFILN---ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQ 441
                         L  L + N     +       P LE L  S N L  +P        
Sbjct: 319 --------------LEELNVSNNKLIELPALP---PRLERLIASFNHLAEVP------EL 355

Query: 442 LSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDL 501
              L+ L +    +   P    +    +  L + ++   +              L+ L +
Sbjct: 356 PQNLKQLHVEYNPLREFPDIPES----VEDLRMNSHLAEVPELPQ--------NLKQLHV 403

Query: 502 SNNNLTHISP 511
             N L     
Sbjct: 404 ETNPLREFPD 413

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  133 bits (335), Expect = 1e-32
 Identities = 84/392 (21%), Positives = 138/392 (35%), Gaps = 91/392 (23%)

Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
               L++ +SG++ LPD + A+   +  L + +N L      T+L      L +L++S  
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNL------TSLPALPPELRTLEVSGN 91

Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF 258
            L   L         +L         L A          + L +L +    L+ LP    
Sbjct: 92  QLTS-LPV-LPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSLPVL-- 139

Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318
                LQEL +S N L     +L +    L  L    + L  +        + L+ L +S
Sbjct: 140 --PPGLQELSVSDNQL----ASLPALPSELCKLWAYNNQLTSLPML----PSGLQELSVS 189

Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
            N+L +L +      + L  L   N  LT L             L+EL +SGN L  LP 
Sbjct: 190 DNQLASLPTLP----SELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRLTSLPV 238

Query: 379 STKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLL 438
              +                                    L+EL +SGN L  LP     
Sbjct: 239 LPSE------------------------------------LKELMVSGNRLTSLP----- 257

Query: 439 PPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELES 498
               S L SL + R ++  LP ++ + + + T++NL  N LS  +  + +      E+ S
Sbjct: 258 -MLPSGLLSLSVYRNQLTRLPESLIHLS-SETTVNLEGNPLSERTLQALR------EITS 309

Query: 499 LDLSNNNLTHISPTVLRHNRAITSIKLVGNPW 530
               +  +           R   ++ L    W
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  115 bits (289), Expect = 5e-27
 Identities = 81/443 (18%), Positives = 132/443 (29%), Gaps = 117/443 (26%)

Query: 63  LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
                 L++  + L  +   +      +  L++   NLT +          L+TLE+S N
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPAL----PPELRTLEVSGN 91

Query: 123 KLKSHIDWTL--VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
           +L S     L  +   L +L       + +  LP         L  L +  N+L      
Sbjct: 92  QLTS-----LPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQL------ 133

Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
           T+L      L  L +S+  L    +                                ++L
Sbjct: 134 TSLPVLPPGLQELSVSDNQLASLPAL------------------------------PSEL 163

Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
            +L   N  L+ LP       + LQEL +S N L     +L +    L  L    + L  
Sbjct: 164 CKLWAYNNQLTSLPML----PSGLQELSVSDNQL----ASLPTLPSELYKLWAYNNRLTS 215

Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY 360
           +        + LK LI+SGN+L +L        + L  L ++   LT L           
Sbjct: 216 LPAL----PSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPMLP------- 260

Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
             L  L +  N L  LP+S                      L  L               
Sbjct: 261 SGLLSLSVYRNQLTRLPES----------------------LIHL-----------SSET 287

Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
            + L GNPL           +++          + D    +    TR +       + L 
Sbjct: 288 TVNLEGNPLSERT--LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA--ADWLV 343

Query: 481 MTSELSFQFLDVLLELESLDLSN 503
              E      D        D ++
Sbjct: 344 PAREGEPAPADRWHMFGQEDNAD 366

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (283), Expect = 4e-26
 Identities = 65/349 (18%), Positives = 111/349 (31%), Gaps = 58/349 (16%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
                L + E  L+ +      ++T    L +  N L  +          L  L ++   
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAHIT---TLVIPDNNLTSLPAL----PPELRTLEVSGNQ 92

Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
           LT + P     L  L         L +      +   L KL     + + +  LP     
Sbjct: 93  LTSL-PVLPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTSLPVLPPG--- 142

Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
               L+ L++++N+L       +L      L  L   N  L   L        + L+ L 
Sbjct: 143 ----LQELSVSDNQL------ASLPALPSELCKLWAYNNQLTS-LPM----LPSGLQELS 187

Query: 220 LSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID--- 276
           +S N L++  L       ++L++L   N  L+ LPA      + L+EL +S N L     
Sbjct: 188 VSDNQLAS--LPTLP---SELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPV 238

Query: 277 -------------AFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
                          T+L      L  L +  + L R+  S  + ++S  T+ L GN L 
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLS 297

Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
                  + +T                 +   E           L    
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  121 bits (306), Expect = 5e-31
 Identities = 73/234 (31%), Positives = 97/234 (41%), Gaps = 41/234 (17%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
              K L L  NKL +L S  F  LT L +L LN+  L  L   +F E     +LE L ++
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL---KNLETLWVT 93

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
            N L  LP                  FD LV                 +L ELRL  N L
Sbjct: 94  DNKLQALPIGV---------------FDQLV-----------------NLAELRLDRNQL 121

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
             LP    +   L++L  L L   ++  LP  VF+   ++  L L NN L    E +F  
Sbjct: 122 KSLPPR--VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF-- 177

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEW 542
            D L EL++L L NN L  +          +  ++L  NPW C CN I  M +W
Sbjct: 178 -DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKW 230

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  118 bits (298), Expect = 5e-30
 Identities = 62/184 (33%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
            L +Q   LS +  + F  LT L  L L+ N L+ +  G+F  L +LE L +    L  +
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFAN 160
               FD L +L  L L +N+LKS     L   V  +L KL  L L  + + +LP  VF  
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKS-----LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155

Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL 220
            T L+ L L  N+L  +         L  L +L L N  LK  + E AF +  KL+ L L
Sbjct: 156 LTSLKELRLYNNQLKRVP--EGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQL 212

Query: 221 SGNP 224
             NP
Sbjct: 213 QENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  116 bits (292), Expect = 3e-29
 Identities = 62/213 (29%), Positives = 82/213 (38%), Gaps = 36/213 (16%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
               KLDL  N L  +    F  LT L  L LN   L  +    F  L +L+TL ++ NK
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 124 LKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
           L++     L   V   L  L  L L ++ + +LP  VF + T L  L+L  NEL      
Sbjct: 97  LQA-----LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS---- 147

Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
                                  L +  F   T L+ L L  N L         K LT+L
Sbjct: 148 -----------------------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK-LTEL 183

Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
             L L N  L R+P   F     L+ L +  NP
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  108 bits (271), Expect = 2e-26
 Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 19  LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
           L  + LN N +Q +  G F   ++L  L++ +  L  +    F  L  L +L L  N L+
Sbjct: 63  LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122

Query: 78  IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNL 137
            + P VFD LT L YL L    L  +    FD L  LK L L  N+LK   +       L
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG--AFDKL 180

Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
            +L TL L  + +  +P+  F +   L+ L L EN
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 44/224 (19%)

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
           +L L++  LS LP+  FHR T L+ L ++ N L      +   L++LE L +  + LQ +
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
               F ++ +L  L L  N+L++L   +F +LT L+ L L    L  L + VF +     
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK---LT 157

Query: 362 DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEE 421
            L+ELRL  N L  +P+                 FD L                  +L+ 
Sbjct: 158 SLKELRLYNNQLKRVPEGA---------------FDKL-----------------TELKT 185

Query: 422 LRLSGNPLHVLPTGNLLPPQLSRLRSLDL-------SRCKIDYL 458
           L+L  N L  +P G      L +L+ L L       +   I Y+
Sbjct: 186 LKLDNNQLKRVPEGAFDS--LEKLKMLQLQENPWDCTCNGIIYM 227

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  121 bits (305), Expect = 3e-30
 Identities = 53/246 (21%), Positives = 83/246 (33%), Gaps = 43/246 (17%)

Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN-ETVFHENYTYPDLEELRLS 369
           +   L  S  +L  +   L        +L+L++  L+RL  E          +L  L LS
Sbjct: 19  ASNILSCSKQQLPNVPQSLPSYTA---LLDLSHNNLSRLRAEWTPTR---LTNLHSLLLS 72

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
            N L+ +                   F  +  L                   L LS N L
Sbjct: 73  HNHLNFISSEA---------------FVPVPNL-----------------RYLDLSSNHL 100

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
           H L         L  L  L L    I  +  N F +   +  L L+ N +S       + 
Sbjct: 101 HTLDEFLF--SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAIT--SIKLVGNPWKCDCNIADMWEWATREK 547
            + L +L  LDLS+N L  +  T L+   A     + L  NP +CDC +  ++      +
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQ 218

Query: 548 GDIGVL 553
               + 
Sbjct: 219 LSSVMD 224

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  116 bits (292), Expect = 2e-28
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 21  TINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
            ++L+ N +     E       +L  L +    L+ I+ + F  +  L  LDLS N L  
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 79  IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV-LGNL 137
           ++  +F  L +LE L+L   ++  +  +AF+++  L+ L LSQN++       +     L
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162

Query: 138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
            KL  LDL  + +  LP              L
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  114 bits (287), Expect = 8e-28
 Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
              L LS N LS          LT LH L L +  L+ + +  F     L+ LD+S N  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-- 98

Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
                                 +L  +    F  + +L+ L+L  N +  ++   F+++ 
Sbjct: 99  ----------------------HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 335 HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST 380
            L  L L+   ++R    +  +    P L  L LS N L  LP + 
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  114 bits (287), Expect = 9e-28
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)

Query: 64  TTLNKLDLSGNPLRIIEPG-VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
           +    LDLS N L  +        LT+L  L+L+  +L +IS  AF  + +L+ L+LS N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 123 KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT- 181
            L + +D   +  +L  L+ L L  + I  +  N F +   L+ L L++N++    V   
Sbjct: 99  HLHT-LDE-FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKL--RTLYLSGNPL 225
             G  L  L  LDLS+  LK  L               LYL  NPL
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 98.0 bits (244), Expect = 3e-22
 Identities = 54/205 (26%), Positives = 74/205 (36%), Gaps = 33/205 (16%)

Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
           + L   +  + N+P ++ +       L+L+ N L  L    T    L +L SL LS+ HL
Sbjct: 21  NILSCSKQQLPNVPQSLPSY---TALLDLSHNNLSRLRAEWTP-TRLTNLHSLLLSHNHL 76

Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
              +S +AFV    LR L LS N L   D       L  L  L L N  +  +  N F  
Sbjct: 77  NF-ISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYNNHIVVVDRNAFED 134

Query: 261 FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL---KMTSLKTLIL 317
              LQ+L +S N                         + R          K+  L  L L
Sbjct: 135 MAQLQKLYLSQN------------------------QISRFPVELIKDGNKLPKLMLLDL 170

Query: 318 SGNKLETLESGLFQNLTHLSVLELN 342
           S NKL+ L     Q L       L 
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 93.4 bits (232), Expect = 1e-20
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 113 HLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
           +   L+LS N L S +        L  L +L L  + ++ +    F     LR L+L+ N
Sbjct: 40  YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS--AADL 230
            L  LD       +L  L+ L L N H+   +  +AF +  +L+ LYLS N +S    +L
Sbjct: 99  HLHTLDEFLF--SDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 231 SVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE--LDISHNPL 274
                 L KL  L L +  L +LP     +     +  L + +NPL
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  119 bits (299), Expect = 2e-29
 Identities = 56/270 (20%), Positives = 102/270 (37%), Gaps = 35/270 (12%)

Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQEC-TLSKINPQFFTNLTTLNKLDLS-G 73
              I +      ++ + +GAF     L  + + +   L  I    F+NL  L+++ +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 74  NPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV 133
           N L  I P  F  L +L+YL+++   + ++      +      L++  N     I+    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
           +G   +   L L ++GI  + ++ F N T L  LNL++N  ++                 
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEE---------------- 192

Query: 194 DLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
                     L  D F  A+    L +S   + +   S  L+ L KL   S  N  L +L
Sbjct: 193 ----------LPNDVFHGASGPVILDISRTRIHSLP-SYGLENLKKLRARSTYN--LKKL 239

Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLS 283
           P     +   L E  +++     AF     
Sbjct: 240 PT--LEKLVALMEASLTYPSHCCAFANWRR 267

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  111 bits (279), Expect = 9e-27
 Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 22/255 (8%)

Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
                ++S ++ +P ++  N      L     +L  +            L+ +++S   +
Sbjct: 12  RVFLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQ-KGAF-SGFGDLEKIEISQNDV 66

Query: 201 KGPLSEDAFVNATKLRTLYLS-GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH 259
              +  D F N  KL  + +   N L   +   A + L  L  L + N G+  LP     
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 260 RFTCLQELDISHNPLI-----DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
                  LDI  N  I     ++F  L         L +  + +Q I  S F      + 
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSF---ESVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELR-LSGNPL 373
            +   N LE L + +F   +   +L+++   +  L            +L++LR  S   L
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE------NLKKLRARSTYNL 236

Query: 374 HVLPDSTKQYSMRTI 388
             LP   K  ++   
Sbjct: 237 KKLPTLEKLVALMEA 251

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  105 bits (264), Expect = 8e-25
 Identities = 47/272 (17%), Positives = 83/272 (30%), Gaps = 61/272 (22%)

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK-LETLESGLFQNLTHLSVLELNNC- 344
           +   L    + L+ I +  F     L+ + +S N  LE +E+ +F NL  L  + +    
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
            L  +N   F      P+L+ L +S   +  LPD  K +S                    
Sbjct: 91  NLLYINPEAFQN---LPNLQYLLISNTGIKHLPDVHKIHS-------------------- 127

Query: 405 LNETVFHENYTYPDLEELRLSGNP-LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVF 463
                            L +  N  +H +   N           L L++  I  +  + F
Sbjct: 128 ------------LQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 464 NNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRH------- 516
           N T+        NNNL       F           LD+S   +  +    L +       
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGAS---GPVILDISRTRIHSLPSYGLENLKKLRAR 231

Query: 517 ----NRAITSIKL--------VGNPWKCDCNI 536
                + + +++         +  P  C    
Sbjct: 232 STYNLKKLPTLEKLVALMEASLTYPSHCCAFA 263

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 18/194 (9%)

Query: 10  DRRNLDNPGLITINLNANP-IQPVE-GAFL-VARSLLYLYMQECTLSKINPQFFTNLTTL 66
           D   + +   + +++  N  I  +E  +F+ ++   + L++ +  + +I+   F      
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 67  NKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
                  N L  +   VF   +    L ++R  +  +     +NL  L+       K   
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKK-- 238

Query: 127 HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN---LNLAENELIDLDVATTL 183
                  L  L  L    L     +  P +  A   W R    L+   N+ I       +
Sbjct: 239 ----LPTLEKLVALMEASL-----TY-PSHCCAFANWRRQISELHPICNKSILRQEVDYM 288

Query: 184 GQNLVHLDSLDLSN 197
            Q      SL   N
Sbjct: 289 TQARGQRSSLAEDN 302

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (288), Expect = 4e-28
 Identities = 60/327 (18%), Positives = 102/327 (31%), Gaps = 33/327 (10%)

Query: 39  ARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC 98
           +     LY Q  T  +      +        D +                + +       
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGR 66

Query: 99  NLTYISPSAFDNLNH--LKTLELSQNKLKSHIDWTL--VLGNLGKLDTLDLRQSGISNLP 154
            L        ++        LEL    L              L  L  + +  +G+  LP
Sbjct: 67  ALKAT-ADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLMELP 120

Query: 155 DNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC--------HLKGPLSE 206
           D        L  L LA N L  L    ++  +L  L  L +  C         L    + 
Sbjct: 121 DT-MQQFAGLETLTLARNPLRAL--PASIA-SLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
                   L++L L    + +  L  ++  L  L  L +RN  LS L     H    L+E
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEE 233

Query: 267 LDISHNPLIDAFTALLSPLESLEHLDM-GYSNLQRISRSTFLKMTSLKTLILSGN-KLET 324
           LD+     +  +  +      L+ L +   SNL  +      ++T L+ L L G   L  
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSR 292

Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNE 351
           L S +   L    ++ +      +L++
Sbjct: 293 LPSLI-AQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (286), Expect = 7e-28
 Identities = 75/334 (22%), Positives = 121/334 (36%), Gaps = 32/334 (9%)

Query: 57  PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
                + +    L   G+        V            NR +    S     N N+ + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSNNPQI 60

Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
              +   LK+  D  L          L+LR   +   PD  F   + L+++ +    L++
Sbjct: 61  ETRTGRALKATAD-LLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLME 118

Query: 177 LDVATTLGQNLVHLDSLDLSNCHLKG-PLSEDAFVNATKLRTLYLSGNP--------LSA 227
           L    T+      L++L L+   L+  P    +  +  +LR L +   P        L++
Sbjct: 119 LP--DTMQ-QFAGLETLTLARNPLRALP---ASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 228 ADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLES 287
            D S   + L  L  L L   G+  LPA+       L+ L I ++PL  A    +  L  
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLS-ALGPAIHHLPK 230

Query: 288 LEHLDM-GYSNLQRISRSTFLKMTSLKTLILSG-NKLETLESGLFQNLTHLSVLELNNC- 344
           LE LD+ G + L+      F     LK LIL   + L TL   +   LT L  L+L  C 
Sbjct: 231 LEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCV 288

Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
            L+RL   +       P    + +  +    L  
Sbjct: 289 NLSRLPSLIAQ----LPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (255), Expect = 8e-24
 Identities = 65/326 (19%), Positives = 112/326 (34%), Gaps = 32/326 (9%)

Query: 18  GLITINLN-ANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
           G   +    +  ++P        +                     N         +G  L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68

Query: 77  RIIEPGVFDPLTS--LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL-- 132
           +     + +  T      L L    L    P     L+HL+ + +    L       L  
Sbjct: 69  KAT-ADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLME-----LPD 121

Query: 133 VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN-------ELIDLDVATTLGQ 185
            +     L+TL L ++ +  LP +  A+   LR L++          E +    A+   Q
Sbjct: 122 TMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
            LV+L SL L    ++   +     N   L++L +  +PLSA  L  A+  L KL  L L
Sbjct: 181 GLVNLQSLRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDL 236

Query: 246 RNC-GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM-GYSNLQRISR 303
           R C  L   P   F     L+ L +     +      +  L  LE LD+ G  NL R+  
Sbjct: 237 RGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 304 STFLKMTSLKTLILSGNKLETLESGL 329
               ++ +   +++  +    L+   
Sbjct: 296 L-IAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 8e-20
 Identities = 59/320 (18%), Positives = 101/320 (31%), Gaps = 60/320 (18%)

Query: 185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLS 244
                  + D +  H     +     N+   +    +G  L A    +          L 
Sbjct: 33  SQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTGRALKATADLLEDATQPGRVALE 87

Query: 245 LRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL---LSPLESLEHLDMGYSNLQRI 301
           LR+  L + P +   R + LQ + I    L      L   +     LE L +  + L+ +
Sbjct: 88  LRSVPLPQFP-DQAFRLSHLQHMTIDAAGL----MELPDTMQQFAGLETLTLARNPLRAL 142

Query: 302 SRSTFLKMTSLKTLILSG-NKLETL--------ESGLFQNLTHLSVLELNNCGLTRLNET 352
             S    +  L+ L +    +L  L         SG  Q L +L  L L   G+  L  +
Sbjct: 143 PAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHE 412
           + +      +L+ L++  +PL  L  +                   L  L  L+      
Sbjct: 202 IAN----LQNLKSLKIRNSPLSALGPA----------------IHHLPKLEELDLRGCTA 241

Query: 413 NYTYPD-------LEELRLSG-NPLHVLPT--GNLLPPQLSRLRSLDLSRC-KIDYLPPN 461
              YP        L+ L L   + L  LP          L++L  LDL  C  +  LP  
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-----LTQLEKLDLRGCVNLSRLPSL 296

Query: 462 VFNNTRNITSLNLANNNLSM 481
                     + +  +  + 
Sbjct: 297 -IAQLPANCIILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 1e-18
 Identities = 52/337 (15%), Positives = 96/337 (28%), Gaps = 65/337 (19%)

Query: 205 SEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCL 264
           S     +++    LY  G+      L      L++  R    +                 
Sbjct: 4   SHHHHHHSSGRENLYFQGST----ALRPYHDVLSQWQRHYNADRNRWHSAWR-QANSNNP 58

Query: 265 QELDISHNPLIDAFTAL-LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
           Q    +   L      L  +       L++    L +     F +++ L+ + +    L 
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLM 117

Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFH-ENYTYPDLEELRLSGNP-LHVLPDSTK 381
            L   + Q    L  L L    L  L  ++          L EL +   P L  LP+   
Sbjct: 118 ELPDTM-QQFAGLETLTLARNPLRALPASIASLNR-----LRELSIRACPELTELPEP-- 169

Query: 382 QYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT--GNLLP 439
                                 + +     E+    +L+ LRL    +  LP    NL  
Sbjct: 170 ----------------------LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL-- 205

Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT--SELSFQFLDVLLELE 497
                L+SL +    +  L P   ++   +  L+L                       L+
Sbjct: 206 ---QNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGG-----RAPLK 256

Query: 498 SLDLSN-NNLTHISPTV----------LRHNRAITSI 523
            L L + +NL  +   +          LR    ++ +
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  116 bits (293), Expect = 7e-28
 Identities = 91/417 (21%), Positives = 150/417 (35%), Gaps = 67/417 (16%)

Query: 16  NPGLITINLNANPIQPVEGAFLVA--RSLLYLYMQECTLSKINPQ----FFTNLTTLNKL 69
           +  + ++++    +     A L+   +    + + +C L++   +           L +L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 70  DLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHLKTLEL 119
           +L  N L       +  G+  P   ++ L L  C LT      +S S    L  L+ L L
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHL 120

Query: 120 SQNKLK----SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA----NNTWLRNLNLAE 171
           S N L       +    +L    +L+ L L    +S       A         + L ++ 
Sbjct: 121 SDNLLGDAGLQLLC-EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 172 NELIDLDV---ATTLGQNLVHLDSLDLSNCHLK----GPLSEDAFVNATKLRTLYLSGNP 224
           N++ +  V      L  +   L++L L +C +       L      +   LR L L  N 
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSNK 238

Query: 225 LS---AADLSVAL-KPLTKLHRLSLRNCGLS----RLPANTFHRFTCLQELDISHNPLID 276
           L     A+L   L  P ++L  L +  CG++                L+EL ++ N L D
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 277 A-----FTALLSPLESLEHLDMGYSNLQRISRSTFLKM----TSLKTLILSGNKLE---- 323
                    LL P   LE L +   +      S F  +      L  L +S N+LE    
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 324 -TLESGLFQNLTHLSVLELNNCGLTRLNE------TVFHENYTYPDLEELRLSGNPL 373
             L  GL Q  + L VL L +C ++  +            N     L EL LS N L
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVS--DSSCSSLAATLLAN---HSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  115 bits (291), Expect = 1e-27
 Identities = 94/390 (24%), Positives = 146/390 (37%), Gaps = 62/390 (15%)

Query: 16  NPGLITINLNANPIQPVEGAFLVAR-------SLLYLYMQECTLSKINPQF----FTNLT 64
           NP L  +NL +N +    G   V +        +  L +Q C L+             L 
Sbjct: 55  NPALAELNLRSNELGD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113

Query: 65  TLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHL 114
           TL +L LS N L     +++  G+ DP   LE L L  C+L+      ++ S        
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA-SVLRAKPDF 172

Query: 115 KTLELSQNKLKSHIDWTLVLG---NLGKLDTLDLRQSGISNLP----DNVFANNTWLRNL 167
           K L +S N +       L  G   +  +L+ L L   G+++        + A+   LR L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 168 NLAENELIDLDV---ATTLGQNLVHLDSLDLSNCHLKGP----LSEDAFVNATKLRTLYL 220
            L  N+L D+ +      L      L +L +  C +       L          L+ L L
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSL 291

Query: 221 SGNPLS---AADLSVALK-PLTKLHRLSLRNCGLSRLPANTF----HRFTCLQELDISHN 272
           +GN L    A  L   L  P  +L  L +++C  +    + F     +   L EL IS+N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 273 PLIDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSLKTLILSGNKL 322
            L DA        L  P   L  L +   ++       ++ +T L   SL+ L LS N L
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSNNCL 410

Query: 323 ET-----LESGLFQNLTHLSVLELNNCGLT 347
                  L   + Q    L  L L +   +
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  109 bits (274), Expect = 2e-25
 Identities = 94/459 (20%), Positives = 150/459 (32%), Gaps = 99/459 (21%)

Query: 114 LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP----DNVFANNTWLRNLNL 169
           +++L++   +L S   W  +L  L +   + L   G++        +    N  L  LNL
Sbjct: 5   IQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 170 AENELIDLDV---ATTLGQNLVHLDSLDLSNCHLK----GPLSEDAFVNATKLRTLYLSG 222
             NEL D+ V      L      +  L L NC L     G LS         L+ L+LS 
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSD 122

Query: 223 NPLS---AADLSVALK-PLTKLHRLSLRNCGLS----RLPANTFHRFTCLQELDISHNPL 274
           N L       L   L  P  +L +L L  C LS       A+        +EL +S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 275 IDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSLKTLILSGNKLET 324
            +A        L      LE L +    +     + +         SL+ L L  NKL  
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKLG- 240

Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYS 384
                             + G+  L   + H +     L  L +    +           
Sbjct: 241 ------------------DVGMAELCPGLLHPSSR---LRTLWIWECGITA--------- 270

Query: 385 MRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH---VLPTGNLLPPQ 441
                    K    L  +    E+          L+EL L+GN L           L   
Sbjct: 271 ---------KGCGDLCRVLRAKES----------LKELSLAGNELGDEGARLLCETLLEP 311

Query: 442 LSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLANNNLSMT--SELSFQFLDVLL 494
             +L SL +  C        +   +V    R +  L ++NN L      EL         
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 495 ELESLDLSNNNLT-----HISPTVLRHNRAITSIKLVGN 528
            L  L L++ +++      ++   L  N ++  + L  N
Sbjct: 371 VLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  100 bits (250), Expect = 2e-22
 Identities = 83/359 (23%), Positives = 137/359 (38%), Gaps = 53/359 (14%)

Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS----RLPANTFHRFTCLQELD 268
             +++L +    LS A  +  L  L +   + L +CGL+    +  ++       L EL+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 269 ISHNPLIDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSLKTLILS 318
           +  N L D         L +P   ++ L +    L       +S ST   + +L+ L LS
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLS 121

Query: 319 GNKL-----ETLESGLFQNLTHLSVLELNNCGLT-RLNETVFHENYTYPDLEELRLSGNP 372
            N L     + L  GL      L  L+L  C L+    E +       PD +EL +S N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY--------PDLEELRL 424
           +        +  +R +   +  +   L  L + +  V  +N             L EL L
Sbjct: 182 I-------NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 425 SGNPLH---VLPTGNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLAN 476
             N L    +      L    SRLR+L +  C I       L   +     ++  L+LA 
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAG 293

Query: 477 NNLSMT--SELSFQFLDVLLELESLDLSNNNLT-----HISPTVLRHNRAITSIKLVGN 528
           N L       L    L+   +LESL + + + T     H S +VL  NR +  +++  N
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNN 351

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 57/260 (21%), Positives = 88/260 (33%), Gaps = 55/260 (21%)

Query: 16  NPGLITINLNANPIQPVEGAFLVA-------RSLLYLYMQECTLSKINPQFFT----NLT 64
              L  + L +N +    G   +          L  L++ EC ++               
Sbjct: 226 KASLRELALGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 65  TLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHL 114
           +L +L L+GN L     R++   + +P   LE L +  C+ T     + S S       L
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFL 343

Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
             L++S N+L+                      +G+  L   +    + LR L LA+ ++
Sbjct: 344 LELQISNNRLED---------------------AGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 175 ID---LDVATTLGQNLVHLDSLDLSNCHLKGP----LSEDAFVNATKLRTLYLSGNPLS- 226
            D     +A TL  N   L  LDLSN  L       L E        L  L L     S 
Sbjct: 383 SDSSCSSLAATLLAN-HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

Query: 227 --AADLSVALKPLTKLHRLS 244
                L    K    L  +S
Sbjct: 442 EMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.0 bits (141), Expect = 5e-09
 Identities = 53/286 (18%), Positives = 89/286 (31%), Gaps = 72/286 (25%)

Query: 264 LQELDISHNPLID-AFTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSLKTLIL 317
           +Q LDI    L D  +  LL  L+  + + +    L     + IS S      +L  L L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNL 63

Query: 318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP 377
             N+L   + G+   +  L  L+  +C +                  +L L         
Sbjct: 64  RSNELG--DVGV-HCV--LQGLQTPSCKIQ-----------------KLSLQNC------ 95

Query: 378 DSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLH---VLPT 434
                     +          L        T          L+EL LS N L    +   
Sbjct: 96  ---------CLTGAGCG---VLSSTLRTLPT----------LQELHLSDNLLGDAGLQLL 133

Query: 435 GNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLANNNLS--MTSELSF 487
              L     RL  L L  C +       L   V     +   L ++NN+++      L  
Sbjct: 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNNDINEAGVRVLCQ 192

Query: 488 QFLDVLLELESLDLSNNNLTHIS----PTVLRHNRAITSIKLVGNP 529
              D   +LE+L L +  +T  +      ++    ++  + L  N 
Sbjct: 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  108 bits (273), Expect = 5e-27
 Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 12/214 (5%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN-PLRIIEPGVFDPLTSLEYLMLNRC 98
            S   L + E  L  I    F+NL  ++++ +S +  L+ +E   F  L+ + ++ +   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 99  N-LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ-SGISNLPDN 156
             LTYI P A   L  LK L +    LK        + +      L++     ++++P N
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 157 VFAN-NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS-NCHLKGPLSEDAFVNA-T 213
            F         L L  N    +        N   LD++ L+ N +L   + +DAF    +
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAF---NGTKLDAVYLNKNKYLTV-IDKDAFGGVYS 205

Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRN 247
               L +S   ++A   S  L+ L +L   +   
Sbjct: 206 GPSLLDVSQTSVTALP-SKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  103 bits (259), Expect = 4e-25
 Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 40/242 (16%)

Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN-KLETLESGLFQNLTHL 336
              + S   S + L +  ++L+ I    F  + ++  + +S +  L+ LES  F NL+ +
Sbjct: 23  IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 337 SVLEL-NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKN 395
           + +E+ N   LT ++     E    P L+ L +    L + PD TK YS           
Sbjct: 83  THIEIRNTRNLTYIDPDALKEL---PLLKFLGIFNTGLKMFPDLTKVYSTDI-------- 131

Query: 396 FDFLVILFILNETVFHENYTYPDLEELRLSGNP-LHVLPTGNLLPPQLSRLRSLDLSRCK 454
                                     L ++ NP +  +P  N      +   +L L    
Sbjct: 132 -----------------------FFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG 167

Query: 455 IDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
              +    FN T+        N  L++  + +F  +     L  LD+S  ++T +    L
Sbjct: 168 FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL--LDVSQTSVTALPSKGL 225

Query: 515 RH 516
            H
Sbjct: 226 EH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  102 bits (256), Expect = 1e-24
 Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 11/206 (5%)

Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
             +        +L L   HL+  +   AF N   +  +Y+S +       S +   L+K+
Sbjct: 24  QRIPSLPPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 241 HRLSLR-NCGLSRLPANTFHRFTCLQELDISHNPL--IDAFTALLSPLESLEHLDMGYSN 297
             + +R    L+ +  +       L+ L I +  L      T + S  +    L++  + 
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS-TDIFFILEITDNP 141

Query: 298 -LQRISRSTFLKMTS-LKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCGLTRLNETVF 354
            +  I  + F  + +   TL L  N   +++   F N T L  + L  N  LT +++  F
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 355 HENYTYPDLEELRLSGNPLHVLPDST 380
              Y+      L +S   +  LP   
Sbjct: 201 GGVYS--GPSLLDVSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  101 bits (254), Expect = 2e-24
 Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 34/235 (14%)

Query: 63  LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN-LTYISPSAFDNLNHLKTLELSQ 121
             +   L L    LR I    F  L ++  + ++    L  +   +F NL+ +  +E+  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLDVA 180
            +  ++ID    L  L  L  L +  +G+   PD     +      L + +N  +     
Sbjct: 90  TRNLTYID-PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS--- 145

Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATK-LRTLYLSGNPLSAADLSVALKPLTK 239
                                  +  +AF        TL L  N  ++  +       TK
Sbjct: 146 -----------------------IPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTK 180

Query: 240 LHRLSL-RNCGLSRLPANTFHR-FTCLQELDISHNPLIDAFTALLSPLESLEHLD 292
           L  + L +N  L+ +  + F   ++    LD+S   +    +  L  L+ L   +
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 97.8 bits (244), Expect = 4e-23
 Identities = 43/282 (15%), Positives = 84/282 (29%), Gaps = 68/282 (24%)

Query: 68  KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH 127
              ++   ++ I P +     S + L L   +L  I   AF NL ++  + +S +     
Sbjct: 15  DFRVTCKDIQRI-PSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID----- 65

Query: 128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNL 187
                                 +  L  + F N + + ++ +               +NL
Sbjct: 66  --------------------VTLQQLESHSFYNLSKVTHIEIRNT------------RNL 93

Query: 188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL-R 246
            ++D               DA      L+ L +    L        +        L +  
Sbjct: 94  TYIDP--------------DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 247 NCGLSRLPANTFHRFT-CLQELDISHNPL----IDAFTALLSPLESLEHLDMGYSN-LQR 300
           N  ++ +P N F         L + +N        AF         L+ + +  +  L  
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-----KLDAVYLNKNKYLTV 194

Query: 301 ISRSTFLKMTS-LKTLILSGNKLETLESGLFQNLTHLSVLEL 341
           I +  F  + S    L +S   +  L S   ++L  L     
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 6/158 (3%)

Query: 17  PGLITINL-NANPIQPVE-GAFLVARSLLYLYMQECTLSKI-NPQFFTNLTTLNKLDLSG 73
             +  I + N   +  ++  A      L +L +    L    +     +      L+++ 
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 74  NP-LRIIEPGVFDPLTS-LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWT 131
           NP +  I    F  L +    L L     T +   AF+    L  + L++NK  + ID  
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKD 198

Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
              G       LD+ Q+ ++ LP     +   L   N 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 36/227 (15%), Positives = 63/227 (27%), Gaps = 75/227 (33%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELN-NCGLTRLNETVFHENYTYPDLEELRL 368
            S +TL L    L T+ S  F NL ++S + ++ +  L +L    F+       +  + +
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL---SKVTHIEI 87

Query: 369 SGNP-LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGN 427
                L  +                      L                 P L+ L +   
Sbjct: 88  RNTRNLTYIDPDA---------------LKEL-----------------PLLKFLGIFNT 115

Query: 428 PLHVLPTGNLLPPQLSRLRSLDLSR-CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELS 486
            L + P    +         L+++    +  +P N F    N                  
Sbjct: 116 GLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCN------------------ 156

Query: 487 FQFLDVLLELESLDLSNNNLTHISPTV----------LRHNRAITSI 523
                   E  +L L NN  T +              L  N+ +T I
Sbjct: 157 --------ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
             E+ R++   +  +P+   LPP     ++L L    +  +P + F+N  NI+ + ++ +
Sbjct: 12  QEEDFRVTCKDIQRIPS---LPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 478 N-LSMTSELSFQFLDVLLELESLDLSNNN-LTHISPTVLRHNRAITSIKLVGN 528
             L      SF     L ++  +++ N   LT+I P  L+    +  + +   
Sbjct: 66  VTLQQLESHSF---YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  109 bits (275), Expect = 9e-27
 Identities = 56/256 (21%), Positives = 74/256 (28%), Gaps = 69/256 (26%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
            S   +      L  L   L ++ T   +L L+   L   +         Y  L +L L 
Sbjct: 10  ASHLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLYTFSLATLM---PYTRLTQLNLD 63

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
              L  L                      L                 P L  L LS N L
Sbjct: 64  RAELTKLQ-----------------VDGTL-----------------PVLGTLDLSHNQL 89

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
             LP    L   L  L  LD+S  ++  LP         +  L L  N L          
Sbjct: 90  QSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL-- 144

Query: 490 LDVLLELESLDLSNNNLTHISPTV-----------LRHNR------------AITSIKLV 526
                +LE L L+NNNLT +   +           L+ N              +    L 
Sbjct: 145 -TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203

Query: 527 GNPWKCDCNIADMWEW 542
           GNPW C+C I     W
Sbjct: 204 GNPWLCNCEILYFRRW 219

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  109 bits (275), Expect = 9e-27
 Identities = 50/237 (21%), Positives = 76/237 (32%), Gaps = 38/237 (16%)

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
            +     ++  +  ++ LP ++  +      L+L+EN L               L  L+L
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKD---TTILHLSENLLYTFS--LATLMPYTRLTQLNL 62

Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
               L              L TL LS N L +  L +  + L  L  L +    L+ LP 
Sbjct: 63  DRAELT---KLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 256 NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL 315
                   LQEL +  N                         L+ +          L+ L
Sbjct: 118 GALRGLGELQELYLKGN------------------------ELKTLPPGLLTPTPKLEKL 153

Query: 316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
            L+ N L  L +GL   L +L  L L    L  + +  F        L    L GNP
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----GSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  107 bits (268), Expect = 7e-26
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 15/187 (8%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
               L++ E  L   +       T L +L+L    L  ++  V   L  L  L L+   L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQL 89

Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNV 157
             + P     L  L  L++S N+L S     L    L  LG+L  L L+ + +  LP  +
Sbjct: 90  QSL-PLLGQTLPALTVLDVSFNRLTS-----LPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 158 FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRT 217
                 L  L+LA N L +L     L   L +LD+L L    L   + +  F +   L  
Sbjct: 144 LTPTPKLEKLSLANNNLTEL--PAGLLNGLENLDTLLLQENSLYT-IPKGFFGS-HLLPF 199

Query: 218 LYLSGNP 224
            +L GNP
Sbjct: 200 AFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  106 bits (267), Expect = 1e-25
 Identities = 53/210 (25%), Positives = 70/210 (33%), Gaps = 34/210 (16%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
                L LS N L         P T L  L L+R  LT +       L  L TL+LS N+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQ 88

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
           L+S     L+   L  L  LD+  + +++LP                             
Sbjct: 89  LQS---LPLLGQTLPALTVLDVSFNRLTSLPLGALR------------------------ 121

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
              L  L  L L    LK  L         KL  L L+ N L+     + L  L  L  L
Sbjct: 122 --GLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGL-LNGLENLDTL 177

Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNP 273
            L+   L  +P   F     L    +  NP
Sbjct: 178 LLQENSLYTIPKGFFGSHL-LPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 97.5 bits (243), Expect = 1e-22
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
                L+LS N L    L+  L P T+L +L+L    L++L          L  LD+SHN
Sbjct: 31  KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN 87

Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN 332
            L  +   L   L +L  LD+ ++ L  +       +  L+ L L GN+L+TL  GL   
Sbjct: 88  QL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 333 LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
              L  L L N  LT L   + +      +L+ L L  N L+ +P 
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNG---LENLDTLLLQENSLYTIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 33/110 (30%), Positives = 51/110 (46%)

Query: 17  PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
           P L T++L+ N +Q +        +L  L +    L+ +       L  L +L L GN L
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 77  RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS 126
           + + PG+  P   LE L L   NLT +     + L +L TL L +N L +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 17  PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
           P L  ++++ N +  +  GA      L  LY++   L  + P   T    L KL L+ N 
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
           L  +  G+ + L +L+ L+L   +L  I    F +   L    L  N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  109 bits (274), Expect = 2e-26
 Identities = 55/302 (18%), Positives = 105/302 (34%), Gaps = 48/302 (15%)

Query: 62  NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
            L    K+    +   + +      L  +  L      +T I       LN+L  LEL  
Sbjct: 17  ALANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
           N++ + +     L NL K+  L+L  + + N+     A    ++ L+L   ++ D+    
Sbjct: 73  NQI-TDLA---PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPL- 125

Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
                L +L  L L    +    +       T L+ L +    +S  DL+  L  L+KL 
Sbjct: 126 ---AGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVS--DLT-PLANLSKLT 176

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
            L   +  +S +          L E+ + +N + D     +SPL +              
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISD-----VSPLANT------------- 216

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
                   ++L  + L+   +         NL   +V++  +           +  Y  P
Sbjct: 217 --------SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

Query: 362 DL 363
           +L
Sbjct: 269 NL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 93.2 bits (232), Expect = 5e-21
 Identities = 45/240 (18%), Positives = 97/240 (40%), Gaps = 25/240 (10%)

Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
              L     +   +S +++      A+   +  L+     +  ++      Q L +L  L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGV----QYLNNLIGL 68

Query: 194 DLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
           +L +  +          N TK+  L LSGNPL   ++S A+  L  +  L L +  ++ +
Sbjct: 69  ELKDNQIT---DLAPLKNLTKITELELSGNPLK--NVS-AIAGLQSIKTLDLTSTQITDV 122

Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313
                   + LQ L +  N + +   + L+ L +L++L +G + +  ++      ++ L 
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLT 176

Query: 314 TLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
           TL    NK+  +      +L +L  + L N  ++ ++      N     L  + L+   +
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSN-----LFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 55/336 (16%), Positives = 112/336 (33%), Gaps = 64/336 (19%)

Query: 154 PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNAT 213
           PD   AN      +   ++ + D         +L  + +L      +    + +      
Sbjct: 14  PDPALAN---AIKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVT---TIEGVQYLN 63

Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
            L  L L  N ++  DL+  LK LTK+  L L    L  + A        ++ LD++   
Sbjct: 64  NLIGLELKDNQIT--DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ 118

Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
           + D     L+ L +L+ L +  + +  IS      +T+L+ L +   ++  L      NL
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANL 172

Query: 334 THLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIW 393
           + L+ L+ ++  ++ ++      N     L E+ L  N +  +                 
Sbjct: 173 SKLTTLKADDNKISDISPLASLPN-----LIEVHLKNNQISDVS---------------- 211

Query: 394 KNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC 453
                                   +L  + L+   +   P         + +    +   
Sbjct: 212 -PLANT-----------------SNLFIVTLTNQTITNQPVFY----NNNLVVPNVVKGP 249

Query: 454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
               + P   ++     S NL  N  S  + +S+ F
Sbjct: 250 SGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTF 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 51/318 (16%), Positives = 99/318 (31%), Gaps = 61/318 (19%)

Query: 211 NATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDIS 270
                  +    + ++    +V    L  +  LS    G++ +          L  L++ 
Sbjct: 17  ALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71

Query: 271 HNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
            N + D     L  L  +  L++  + L+ +S      + S+KTL L+  ++  +     
Sbjct: 72  DNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--L 125

Query: 331 QNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT 390
             L++L VL L+   +T ++      N     L+ L +    +                 
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTN-----LQYLSIGNAQV----------------- 163

Query: 391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDL 450
               +   L  L                L  L+   N +  +         L  L  + L
Sbjct: 164 ---SDLTPLANL--------------SKLTTLKADDNKISDISP----LASLPNLIEVHL 202

Query: 451 SRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
              +I  + P    NT N+  + L N  ++         L V        +   +   I+
Sbjct: 203 KNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP-----NVVKGPSGAPIA 255

Query: 511 PTVLRHNRAITSIKLVGN 528
           P  +  N    S  L  N
Sbjct: 256 PATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 42/281 (14%), Positives = 87/281 (30%), Gaps = 58/281 (20%)

Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
              L    +++     ++     T      +  L      +       +  L +L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETV 353
             + +  ++      +T +  L LSGN L+ + +     L  +  L+L +  +T +    
Sbjct: 71  KDNQITDLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-- 124

Query: 354 FHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHEN 413
                   +L+ L L  N +  +                      L              
Sbjct: 125 ---LAGLSNLQVLYLDLNQITNIS-----------------PLAGL-------------- 150

Query: 414 YTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLN 473
               +L+ L +    +  L         LS+L +L     KI  + P    +  N+  ++
Sbjct: 151 ---TNLQYLSIGNAQVSDLTPLA----NLSKLTTLKADDNKISDISP--LASLPNLIEVH 201

Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
           L NN +S         L     L  + L+N  +T+      
Sbjct: 202 LKNNQIS-----DVSPLANTSNLFIVTLTNQTITNQPVFYN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 44/266 (16%), Positives = 88/266 (33%), Gaps = 58/266 (21%)

Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
             ++    + + D  T   + L+ +  L    + +  I       + +L  L L  N++ 
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT 76

Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQY 383
            L     +NLT ++ LEL+   L  ++            ++ L L+   +  +       
Sbjct: 77  DLAP--LKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLDLTSTQITDVTPLAG-- 127

Query: 384 SMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS 443
                                             +L+ L L  N +  +    L    L+
Sbjct: 128 --------------------------------LSNLQVLYLDLNQITNIS--PL--AGLT 151

Query: 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
            L+ L +   ++  L P    N   +T+L   +N +S         L  L  L  + L N
Sbjct: 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-----DISPLASLPNLIEVHLKN 204

Query: 504 NNLTHISPTVLRHNRAITSIKLVGNP 529
           N ++ +SP  L +   +  + L    
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 52/248 (20%), Positives = 83/248 (33%), Gaps = 56/248 (22%)

Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
              L +   +  G SN+      T   +  + TL   G  + T+E    Q L +L  LEL
Sbjct: 15  DPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLEL 70

Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
            +  +T L             + EL LSGNPL  +                      L  
Sbjct: 71  KDNQITDLAPLK-----NLTKITELELSGNPLKNV-----------------SAIAGL-- 106

Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
                            ++ L L+   +  +    L    LS L+ L L   +I  + P 
Sbjct: 107 ---------------QSIKTLDLTSTQITDVT--PL--AGLSNLQVLYLDLNQITNISP- 146

Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
                 N+  L++ N  +S         L  L +L +L   +N ++ ISP  L     + 
Sbjct: 147 -LAGLTNLQYLSIGNAQVS-----DLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198

Query: 522 SIKLVGNP 529
            + L  N 
Sbjct: 199 EVHLKNNQ 206

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (277), Expect = 1e-25
 Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 48/299 (16%)

Query: 66  LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
           + +      P++ I P   D         L + ++T       + LN +  +  + + +K
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
           S +     +  L  +  L L  + ++++      N   L  L L EN++ DL       +
Sbjct: 57  S-VQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSL----K 106

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
           +L  L SL L +  +      +  V+  +L +LYL  N ++  D++  L  LTKL  LSL
Sbjct: 107 DLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKIT--DIT-VLSRLTKLDTLSL 160

Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
            +  +S +        T LQ L +S N + D     L  L  L                 
Sbjct: 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-----LRALAGL----------------- 196

Query: 306 FLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLE 364
                +L  L L   +          NL   + ++  +  L          +Y  P+++
Sbjct: 197 ----KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 98.6 bits (245), Expect = 1e-21
 Identities = 50/287 (17%), Positives = 94/287 (32%), Gaps = 29/287 (10%)

Query: 19  LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
            I  NL    +           S+  +      +  +       L  + KL L+GN L  
Sbjct: 23  TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD 79

Query: 79  IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
           I+P     L +L +L L+   +  +S     +L  LK+L L  N +   I+    L +L 
Sbjct: 80  IKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD-IN---GLVHLP 131

Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC 198
           +L++L L  + I+++     +  T L  L+L +N++ D+         L  L +L LS  
Sbjct: 132 QLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNLYLSKN 185

Query: 199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF 258
           H+       A      L  L L         ++     L   + +   +         + 
Sbjct: 186 HIS---DLRALAGLKNLDVLELFSQECLNKPIN-HQSNLVVPNTVKNTD--------GSL 233

Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRST 305
                + +      P +       +   S            +     
Sbjct: 234 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 4e-18
 Identities = 48/317 (15%), Positives = 97/317 (30%), Gaps = 56/317 (17%)

Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
           +        P+    +        +  + +L+   ++     T +    + ++  +++ +
Sbjct: 1   MGETITVSTPIK--QIF-PDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI 55

Query: 275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
                  +  L ++  L +  + L  I       + +L  L L  NK++ L S   ++L 
Sbjct: 56  KSVQG--IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDLSS--LKDLK 109

Query: 335 HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK 394
            L  L L + G++ +N  V         LE L L  N +  +                  
Sbjct: 110 KLKSLSLEHNGISDINGLVHLPQ-----LESLYLGNNKITDIT----------------- 147

Query: 395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCK 454
               L                   L+ L L  N +  +    L    L++L++L LS+  
Sbjct: 148 VLSRL-----------------TKLDTLSLEDNQISDIV--PL--AGLTKLQNLYLSKNH 186

Query: 455 IDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL 514
           I  L        +N+  L L +             L V   +++ D S      IS    
Sbjct: 187 ISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 244

Query: 515 RHNRAITSIKLVGNPWK 531
                +           
Sbjct: 245 YEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.7 bits (214), Expect = 7e-18
 Identities = 45/272 (16%), Positives = 91/272 (33%), Gaps = 58/272 (21%)

Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
           + E      P+   F             ++   ++      T  ++ S+  +I + + ++
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK 56

Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQY 383
           +++    Q L +++ L LN   LT +            +L  L L  N +          
Sbjct: 57  SVQG--IQYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDENKI---------- 99

Query: 384 SMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS 443
                     K+   L  L                L+ L L  N +  +    L    L 
Sbjct: 100 ----------KDLSSLKDL--------------KKLKSLSLEHNGISDIN--GL--VHLP 131

Query: 444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
           +L SL L   KI  +     +    + +L+L +N +S         L  L +L++L LS 
Sbjct: 132 QLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSK 184

Query: 504 NNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
           N+++ +    L   + +  ++L          
Sbjct: 185 NHISDLRA--LAGLKNLDVLELFSQECLNKPI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.2 bits (210), Expect = 2e-17
 Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 56/280 (20%)

Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319
            F    + ++    + DA T   + L S++ +    S+++ +       + ++  L L+G
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNG 74

Query: 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS 379
           NKL  ++     NL +L  L L+   +  L+     ++     L+ L L  N +  +   
Sbjct: 75  NKLTDIKP--LTNLKNLGWLFLDENKIKDLS---SLKDLK--KLKSLSLEHNGISDIN-- 125

Query: 380 TKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP 439
                              L                 P LE L L  N +  +    L  
Sbjct: 126 ---------------GLVHL-----------------PQLESLYLGNNKITDIT--VL-- 149

Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL 499
            +L++L +L L   +I  + P        + +L L+ N++S       + L  L  L+ L
Sbjct: 150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDVL 202

Query: 500 DLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM 539
           +L +    +       +     ++K           I+D 
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 2e-16
 Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 16/192 (8%)

Query: 13  NLDN-PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDL 71
            +   P +  + LN N +  ++      ++L +L++ E  +  ++     +L  L  L L
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSL 116

Query: 72  SGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWT 131
             N +  I       L  LE L L    +T I+      L  L TL L  N++   I   
Sbjct: 117 EHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IV-- 169

Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
             L  L KL  L L ++ IS+L     A    L  L L   E ++  +      NLV  +
Sbjct: 170 -PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI--NHQSNLVVPN 224

Query: 192 SLDLSNCHLKGP 203
           ++  ++  L  P
Sbjct: 225 TVKNTDGSLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 18/139 (12%), Positives = 41/139 (29%), Gaps = 5/139 (3%)

Query: 16  NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
              L T++L  N I  +         L  LY+ +  +S +       L  L+ L+L    
Sbjct: 152 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 208

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
                      L     +     + + ++P    +    +   +  +  +   + + +  
Sbjct: 209 CLNKPINHQSNLVVPNTVKNT--DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFY 266

Query: 136 NLGKLDTLDLRQSGISNLP 154
               +     R  G    P
Sbjct: 267 QPVTIGKAKARFHGRVTQP 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 1e-23
 Identities = 65/351 (18%), Positives = 103/351 (29%), Gaps = 64/351 (18%)

Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
           S +     + G    D F    K     L G   + A   +    + +   L L    LS
Sbjct: 14  SQNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
            LP N       +  L+I+ N L     +L     SLE+LD   + L  +         S
Sbjct: 73  SLPDNLP---PQITVLEITQNAL----ISLPELPASLEYLDACDNRLSTLPEL----PAS 121

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
           LK L +  N+L  L          L  +  +N  LT L E           LE L +  N
Sbjct: 122 LKHLDVDNNQLTMLPELP----ALLEYINADNNQLTMLPELPTS-------LEVLSVRNN 170

Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
            L  LP+  +                                     LE L +S N L  
Sbjct: 171 QLTFLPELPES------------------------------------LEALDVSTNLLES 194

Query: 432 LPTGNLLPPQLSRLR-SLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFL 490
           LP   +                 +I ++P N+ +      ++ L +N L   S    + L
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD-PTCTIILEDNPL---SSRIRESL 250

Query: 491 DVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWE 541
                           +         +R +        P     +++ +W 
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (251), Expect = 2e-22
 Identities = 61/324 (18%), Positives = 100/324 (30%), Gaps = 41/324 (12%)

Query: 62  NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML---NRCNLTYISPSAFDNLNHLKTLE 118
           N  +L+  +   N +       F      E   L   NR     +       +N    L+
Sbjct: 9   NNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQ 65

Query: 119 LSQNKLKSHIDWTLVLGNLGK-LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL 177
           L++  L S      +  NL   +  L++ Q+ + +LP+        L  L+  +N L   
Sbjct: 66  LNRLNLSS------LPDNLPPQITVLEITQNALISLPELP----ASLEYLDACDNRL--- 112

Query: 178 DVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL 237
              +TL +    L  LD+ N  L   L E        L  +    N L+           
Sbjct: 113 ---STLPELPASLKHLDVDNNQLTM-LPELP----ALLEYINADNNQLTMLPEL-----P 159

Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI---DAFTALLSPLESLEHLDMG 294
           T L  LS+RN  L+ LP         L+ LD+S N L              E+       
Sbjct: 160 TSLEVLSVRNNQLTFLPEL----PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 295 YSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF 354
            + +  I  +  L +    T+IL  N L +         T            +  +    
Sbjct: 216 ENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 355 HENYTYPDLEELRLSGNPLHVLPD 378
             +    D        N    +  
Sbjct: 275 TLHRPLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.3 bits (242), Expect = 3e-21
 Identities = 48/299 (16%), Positives = 91/299 (30%), Gaps = 64/299 (21%)

Query: 234 LKPLTKLHRLS--LRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL-LSPLESLEH 290
           + P+     LS       +S   A+ F  +   ++  +      +A + L    +     
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63

Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN 350
           L +   NL  +  +       +  L ++ N L +L          L  L+  +  L+ L 
Sbjct: 64  LQLNRLNLSSLPDNLP---PQITVLEITQNALISLPE----LPASLEYLDACDNRLSTLP 116

Query: 351 ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVF 410
           E           L+ L +  N L +LP+                                
Sbjct: 117 ELP-------ASLKHLDVDNNQLTMLPELPAL---------------------------- 141

Query: 411 HENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT 470
                   LE +    N L +LP         + L  L +   ++ +LP        ++ 
Sbjct: 142 --------LEYINADNNQLTMLP------ELPTSLEVLSVRNNQLTFLPELP----ESLE 183

Query: 471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
           +L+++ N L     +  +               N +THI P  +       +I L  NP
Sbjct: 184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNP 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.8 bits (238), Expect = 9e-21
 Identities = 59/373 (15%), Positives = 109/373 (29%), Gaps = 62/373 (16%)

Query: 132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD 191
           L + N   L + +   + IS    + F+         L      +  V+      +    
Sbjct: 5   LPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEA-VSLLKECLINQFS 62

Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS 251
            L L+  +L   L ++      ++  L ++ N L +            L  L   +  LS
Sbjct: 63  ELQLNRLNLSS-LPDNLP---PQITVLEITQNALISLPEL-----PASLEYLDACDNRLS 113

Query: 252 RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
            LP         L+ LD+ +N L    T L      LE+++   + L  +        TS
Sbjct: 114 TLPE----LPASLKHLDVDNNQL----TMLPELPALLEYINADNNQLTMLPEL----PTS 161

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
           L+ L +  N+L  L          L  L+++   L  L       +++       R   N
Sbjct: 162 LEVLSVRNNQLTFLPELP----ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN 217

Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV 431
            +  +P++                      +  L                + L  NPL  
Sbjct: 218 RITHIPEN----------------------ILSL-----------DPTCTIILEDNPLSS 244

Query: 432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLD 491
               +L   Q +        R              R +     A    +  S++S  +  
Sbjct: 245 RIRESL--SQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

Query: 492 VLLELESLDLSNN 504
              E  +   S  
Sbjct: 303 FEHEEHANTFSAF 315

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 7e-14
 Identities = 49/290 (16%), Positives = 88/290 (30%), Gaps = 43/290 (14%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLN-----------------KLDLSGNPLRIIEPG 82
                L +    LS +       +T L                   LD   N L  +   
Sbjct: 59  NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPEL 118

Query: 83  VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDT 142
                 SL++L ++   LT +          L+ +    N+L      T++      L+ 
Sbjct: 119 ----PASLKHLDVDNNQLTMLPEL----PALLEYINADNNQL------TMLPELPTSLEV 164

Query: 143 LDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL-DVATTLGQNLVHLDSLDLSNCHLK 201
           L +R + ++ LP+        L  L+++ N L  L  V      +             + 
Sbjct: 165 LSVRNNQLTFLPELP----ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 202 G-PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA--NTF 258
             P   +  ++     T+ L  NPLS+  +  +L   T            S      NT 
Sbjct: 221 HIP---ENILSLDPTCTIILEDNPLSSR-IRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK 308
           HR                  + +    E  EH +   + L R+S +   +
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSAR 326

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 97.8 bits (244), Expect = 3e-23
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           +  I P  F+    L ++DLS N +  + P  F  L SL  L+L    +T +  S F+ L
Sbjct: 44  IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103

Query: 112 NHLKTLELSQNKLKS-HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA 170
             L+ L L+ NK+    +D      +L  L+ L L  + +  +    F+    ++ ++LA
Sbjct: 104 FSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160

Query: 171 EN 172
           +N
Sbjct: 161 QN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 97.4 bits (243), Expect = 4e-23
 Identities = 43/182 (23%), Positives = 66/182 (36%), Gaps = 37/182 (20%)

Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
             + E+RL  N + V+P                                F     Y  L 
Sbjct: 32  ETITEIRLEQNTIKVIP-----------------------------PGAFSP---YKKLR 59

Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
            + LS N +  L         L  L SL L   KI  LP ++F    ++  L L  N ++
Sbjct: 60  RIDLSNNQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117

Query: 481 MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMW 540
                +F     L  L  L L +N L  I+       RAI ++ L  NP+ CDC++  + 
Sbjct: 118 CLRVDAF---QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLA 174

Query: 541 EW 542
           ++
Sbjct: 175 DY 176

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 95.9 bits (239), Expect = 1e-22
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 29/162 (17%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
            T+ ++ L  N +++I PG F P   L  + L+   ++ ++P AF  L  L +L L  NK
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
           +   +  + +   L  L  L L  + I+ L  + F                         
Sbjct: 92  ITE-LPKS-LFEGLFSLQLLLLNANKINCLRVDAF------------------------- 124

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
            Q+L +L+ L L +  L+  +++  F     ++T++L+ NP 
Sbjct: 125 -QDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 87.4 bits (217), Expect = 9e-20
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 21  TINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII 79
            I L  N I+ +  GAF   + L  + +    +S++ P  F  L +LN L L GN +  +
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 80  EPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGK 139
              +F+ L SL+ L+LN   +  +   AF +L++L  L L  NKL++    T     L  
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT--FSPLRA 153

Query: 140 LDTLDL 145
           + T+ L
Sbjct: 154 IQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 19  LITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
           L  I+L+ N I  +   AF   RSL  L +    ++++    F  L +L  L L+ N + 
Sbjct: 58  LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117

Query: 78  IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
            +    F  L +L  L L    L  I+   F  L  ++T+ L+QN
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 81.6 bits (202), Expect = 9e-18
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)

Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
             + L Q+ I  +P   F+    LR ++L+ N++ +L      G  L  L+SL L    +
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG--LRSLNSLVLYGNKI 92

Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
              L +  F     L+ L L+ N ++   +  A + L  L+ LSL +  L  +   TF  
Sbjct: 93  TE-LPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 261 FTCLQELDISHNPLI 275
              +Q + ++ NP I
Sbjct: 151 LRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 27/139 (19%)

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
            + L    +  +P   F  +  L+ +D+S+N                         +  +
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN------------------------QISEL 71

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
           +   F  + SL +L+L GNK+  L   LF+ L  L +L LN   +  L    F       
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLH 128

Query: 362 DLEELRLSGNPLHVLPDST 380
           +L  L L  N L  +   T
Sbjct: 129 NLNLLSLYDNKLQTIAKGT 147

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 43/179 (24%)

Query: 286 ESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCG 345
           E++  + +  + ++ I    F     L+ + LS N++  L    FQ L  L+ L L    
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 346 LTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFIL 405
           +T L +++F        L+ L L+ N ++ L                   F  L      
Sbjct: 92  ITELPKSLFEG---LFSLQLLLLNANKINCLRVDA---------------FQDL------ 127

Query: 406 NETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR------CKIDYL 458
                       +L  L L  N L  +  G   P  L  ++++ L++      C + +L
Sbjct: 128 -----------HNLNLLSLYDNKLQTIAKGTFSP--LRAIQTMHLAQNPFICDCHLKWL 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 98.6 bits (246), Expect = 7e-23
 Identities = 60/293 (20%), Positives = 107/293 (36%), Gaps = 48/293 (16%)

Query: 71  LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
               P++ I     D         L + ++T       + LN +  +  + + +KS +  
Sbjct: 9   TVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ- 62

Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHL 190
              +  L  +  L L  + ++++     AN   L  L L EN++ DL       ++L  L
Sbjct: 63  --GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSL----KDLKKL 114

Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
            SL L +  +      +  V+  +L +LYL  N ++  D++  L  LTKL  LSL +  +
Sbjct: 115 KSLSLEHNGIS---DINGLVHLPQLESLYLGNNKIT--DIT-VLSRLTKLDTLSLEDNQI 168

Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT 310
           S +        T LQ L +S N + D     L  L  L                      
Sbjct: 169 SDIVP--LAGLTKLQNLYLSKNHISD-----LRALAGL---------------------K 200

Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL 363
           +L  L L   +          NL   + ++  +  L          +Y  P++
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 56/284 (19%), Positives = 98/284 (34%), Gaps = 22/284 (7%)

Query: 62  NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
                 K +L    +        + L S++ ++ N  ++  +       L ++  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
           NKL         L NL  L  L L ++ + +L      +   L++L+L  N + D++   
Sbjct: 78  NKLTD----IKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDINGL- 130

Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
               +L  L+SL L N  +            TKL TL L  N +S  D+   L  LTKL 
Sbjct: 131 ---VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS--DIV-PLAGLTKLQ 181

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
            L L    +S L A        L  L++     ++      S L     +     +L   
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCG 345
              +         +     +     S +F     +   +    G
Sbjct: 240 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 283

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 94.4 bits (235), Expect = 2e-21
 Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 22/240 (9%)

Query: 9   NDRRNLDN-PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLN 67
               + D     I  NL    +           S+  +      +  +       L  + 
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVT 71

Query: 68  KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH 127
           KL L+GN L  I+P     L +L +L L+   +  +S     +L  LK+L L  N +   
Sbjct: 72  KLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD- 126

Query: 128 IDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNL 187
           I+    L +L +L++L L  + I+++   V +  T L  L+L +N++ D+         L
Sbjct: 127 IN---GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL----AGL 177

Query: 188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRN 247
             L +L LS  H+       A      L  L L         ++     L   + +   +
Sbjct: 178 TKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPIN-HQSNLVVPNTVKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 56/281 (19%), Positives = 91/281 (32%), Gaps = 50/281 (17%)

Query: 86  PLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
           PL S    +     +  I     D         L +  +       +    L  +D +  
Sbjct: 2   PLGSETITVPT--PIKQIFS--DDAFAETIKDNLKKKSVTD----AVTQNELNSIDQIIA 53

Query: 146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS 205
             S I ++          +  L L  N+L D+        NL +L  L L    +K    
Sbjct: 54  NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLA----NLKNLGWLFLDENKVK---D 104

Query: 206 EDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQ 265
             +  +  KL++L L  N +S  D++  L  L +L  L L N  ++ +      R T L 
Sbjct: 105 LSSLKDLKKLKSLSLEHNGIS--DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLD 159

Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
            L +  N + D     + PL  L                     T L+ L LS N +  L
Sbjct: 160 TLSLEDNQISD-----IVPLAGL---------------------TKLQNLYLSKNHISDL 193

Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEEL 366
            +     L +L VLEL +                   ++  
Sbjct: 194 RA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 50/220 (22%), Positives = 81/220 (36%), Gaps = 26/220 (11%)

Query: 154 PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNAT 213
            D+ FA        NL +  + D          L  +D +  +N  +K   S        
Sbjct: 19  SDDAFAE---TIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIK---SVQGIQYLP 68

Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
            +  L+L+GN L+  D+   L  L  L  L L    +  L +        L+ L + HN 
Sbjct: 69  NVTKLFLNGNKLT--DIK-PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG 123

Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNL 333
           + D     L  L  LE L +G + +  I+     ++T L TL L  N++  +       L
Sbjct: 124 ISD--INGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 334 THLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
           T L  L L+   ++ L            +L+ L L     
Sbjct: 178 TKLQNLYLSKNHISDLRA-----LAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 15/187 (8%)

Query: 17  PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
           P +  + LN N +  ++      ++L +L++ E  +  ++     +L  L  L L  N +
Sbjct: 68  PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI 124

Query: 77  RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
             I       L  LE L L    +T I+      L  L TL L  N++   I     L  
Sbjct: 125 SDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IV---PLAG 176

Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
           L KL  L L ++ IS+L     A    L  L L   E ++  +      NLV  +++  +
Sbjct: 177 LTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQ--SNLVVPNTVKNT 232

Query: 197 NCHLKGP 203
           +  L  P
Sbjct: 233 DGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 48/294 (16%), Positives = 96/294 (32%), Gaps = 56/294 (19%)

Query: 217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID 276
                  P+    +  +     +  + +L+   ++     T +    + ++  +++ +  
Sbjct: 6   ETITVPTPIK--QIF-SDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS 60

Query: 277 AFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL 336
                +  L ++  L +  + L  I       + +L  L L  NK++ L S   ++L  L
Sbjct: 61  VQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKL 114

Query: 337 SVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF 396
             L L + G++ +N  V         LE L L  N +                     + 
Sbjct: 115 KSLSLEHNGISDINGLVHLPQ-----LESLYLGNNKI--------------------TDI 149

Query: 397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID 456
             L  L                L+ L L  N +  +         L++L++L LS+  I 
Sbjct: 150 TVLSRL--------------TKLDTLSLEDNQISDIVPLA----GLTKLQNLYLSKNHIS 191

Query: 457 YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
            L        +N+  L L +             L V   +++ D S      IS
Sbjct: 192 DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 56/266 (21%)

Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319
            F    + ++    + DA T   + L S++ +    S+++ +       + ++  L L+G
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNG 77

Query: 320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDS 379
           NKL  ++     NL +L  L L+   +  L  ++         L+ L L  N +  +   
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVKDL-SSLKD----LKKLKSLSLEHNGISDIN-- 128

Query: 380 TKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP 439
                              L                 P LE L L  N +  +   +   
Sbjct: 129 ---------------GLVHL-----------------PQLESLYLGNNKITDITVLS--- 153

Query: 440 PQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL 499
            +L++L +L L   +I  + P        + +L L+ N++S       + L  L  L+ L
Sbjct: 154 -RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDVL 205

Query: 500 DLSNNNLTHISPTVLRHNRAITSIKL 525
           +L +    +       +     ++K 
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 42/248 (16%), Positives = 86/248 (34%), Gaps = 56/248 (22%)

Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
                     ++   ++      T  ++ S+  +I + + +++++    Q L +++ L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75

Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
           N   LT +            +L  L L  N +                    K+   L  
Sbjct: 76  NGNKLTDIKPL-----ANLKNLGWLFLDENKV--------------------KDLSSLKD 110

Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
           L                L+ L L  N +  +    L    L +L SL L   KI  +   
Sbjct: 111 L--------------KKLKSLSLEHNGISDIN--GL--VHLPQLESLYLGNNKITDITV- 151

Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
             +    + +L+L +N +S         L  L +L++L LS N+++ +    L   + + 
Sbjct: 152 -LSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLD 203

Query: 522 SIKLVGNP 529
            ++L    
Sbjct: 204 VLELFSQE 211

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 94.0 bits (234), Expect = 5e-22
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 28/154 (18%)

Query: 21  TINLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
            + LN N        G F     L  +      ++ I    F   + +N++ L+ N L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 79  IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
           ++  +F  L SL+ LML    +T +   +F  L+ ++ L L  N++ +            
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT------------ 143

Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
                         +    F     L  LNL  N
Sbjct: 144 --------------VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 93.6 bits (233), Expect = 8e-22
 Identities = 29/128 (22%), Positives = 61/128 (47%)

Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
             L L+ N  +  + +   K L +L +++  N  ++ +    F   + + E+ ++ N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTH 335
           +    +   LESL+ L +  + +  +   +F+ ++S++ L L  N++ T+  G F  L  
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 336 LSVLELNN 343
           LS L L  
Sbjct: 155 LSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 92.0 bits (229), Expect = 3e-21
 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 30/163 (18%)

Query: 64  TTLNKLDLSGNPLRIIEP-GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
               +L L+ N   ++E  G+F  L  L  +  +   +T I   AF+  + +  + L+ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 123 KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATT 182
           +L++ +    +   L  L TL LR + I+ + ++ F                        
Sbjct: 92  RLEN-VQHK-MFKGLESLKTLMLRSNRITCVGNDSF------------------------ 125

Query: 183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL 225
               L  +  L L +  +   ++  AF     L TL L  NP 
Sbjct: 126 --IGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 36/182 (19%)

Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
               ELRL+ N   VL  +                             +F +    P L 
Sbjct: 32  QYTAELRLNNNEFTVLEATG----------------------------IFKK---LPQLR 60

Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
           ++  S N +  +  G       S +  + L+  +++ +   +F    ++ +L L +N ++
Sbjct: 61  KINFSNNKITDIEEGAFE--GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118

Query: 481 MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMW 540
                SF     L  +  L L +N +T ++P       +++++ L+ NP+ C+C +A + 
Sbjct: 119 CVGNDSF---IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLG 175

Query: 541 EW 542
           EW
Sbjct: 176 EW 177

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 251 SRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
             +P  T        EL +++N       T +   L  L  ++   + +  I    F   
Sbjct: 28  EHIPQYT-------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
           + +  ++L+ N+LE ++  +F+ L  L  L L +  +T +    F        +  L L 
Sbjct: 81  SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLY 137

Query: 370 GNPLHVLPDST 380
            N +  +    
Sbjct: 138 DNQITTVAPGA 148

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.5 bits (181), Expect = 6e-15
 Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 29/160 (18%)

Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
             L L+ N+  + ++ T +   L +L  ++   + I+++ +  F   + +  + L  N L
Sbjct: 35  AELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93

Query: 175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVAL 234
            ++                               F     L+TL L  N ++        
Sbjct: 94  ENVQ---------------------------HKMFKGLESLKTLMLRSNRITCVGNDS-F 125

Query: 235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
             L+ +  LSL +  ++ +    F     L  L++  NP 
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 93.6 bits (233), Expect = 1e-21
 Identities = 54/183 (29%), Positives = 74/183 (40%), Gaps = 35/183 (19%)

Query: 45  LYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS 104
           L +Q   L+ ++   F  LT L  L+L  N L+ +  GVFD LT L  L L    L  + 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFANN 161
              FD+L  L  L L  N+LKS     L   V   L KL  L L  + + ++P   F   
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKS-----LPSGVFDRLTKLKELRLNTNQLQSIPAGAFD-- 152

Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS 221
                                    L +L +L LS   L+  +   AF    KL+T+ L 
Sbjct: 153 ------------------------KLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLF 187

Query: 222 GNP 224
           GN 
Sbjct: 188 GNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 92.8 bits (231), Expect = 2e-21
 Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 9/153 (5%)

Query: 24  LNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPG 82
           L +  +  +    F     L +L +    L  ++   F +LT L  L L+ N L  +  G
Sbjct: 42  LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101

Query: 83  VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGK 139
           VFD LT L+ L L    L  +    FD L  LK L L+ N+L+S     +       L  
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-----IPAGAFDKLTN 156

Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
           L TL L  + + ++P   F     L+ + L  N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 52/226 (23%), Positives = 73/226 (32%), Gaps = 64/226 (28%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
              + L L    L TL    F+ LT L+ L L+   L  L+  VF +     +L  L L+
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD---LTELGTLGLA 91

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
            N L  LP                  FD L                   L++L L GN  
Sbjct: 92  NNQLASLPLGV---------------FDHLT-----------------QLDKLYLGGN-- 117

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
                                   ++  LP  VF+    +  L L  N L      +F  
Sbjct: 118 ------------------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-- 151

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
            D L  L++L LS N L  +          + +I L GN + C   
Sbjct: 152 -DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 36/184 (19%)

Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
           + LDL+ +G++ L D  F   T L  LNL  N+L                          
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-------------------------- 71

Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
              LS   F + T+L TL L+ N L++  L V    LT+L +L L    L  LP+  F R
Sbjct: 72  -QTLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDR 129

Query: 261 FTCLQELDISHNPL----IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
            T L+EL ++ N L      AF      L +L+ L +  + LQ +    F ++  L+T+ 
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDK----LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 317 LSGN 320
           L GN
Sbjct: 186 LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 63/222 (28%), Positives = 84/222 (37%), Gaps = 64/222 (28%)

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
           +L L++ GL+ L   TF   T L  L++ +N                         LQ +
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYN------------------------QLQTL 74

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
           S   F  +T L TL L+ N+L +L  G+F +LT L  L L    L  L   VF       
Sbjct: 75  SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR---LT 131

Query: 362 DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEE 421
            L+ELRL+ N L  +P                  FD L                  +L+ 
Sbjct: 132 KLKELRLNTNQLQSIPAGA---------------FDKLT-----------------NLQT 159

Query: 422 LRLSGNPLHVLPTG---NLLPPQLSRLRS--LDLSRCKIDYL 458
           L LS N L  +P G    L   Q   L     D SRC+I YL
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL 201

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 93.6 bits (233), Expect = 9e-21
 Identities = 58/360 (16%), Positives = 114/360 (31%), Gaps = 65/360 (18%)

Query: 58  QFFTNLTTLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF---- 108
           +F +    +  LDLS N L       +     +   S+  L L+  +L + +        
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 109 -DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
                ++ +L LS N L                            L   + A    +  L
Sbjct: 76  AAIPANVTSLNLSGNFLS---------------------YKSSDELVKTLAAIPFTITVL 114

Query: 168 NLAENELIDL---DVATTLGQNLVHLDSLDLSNCHLKGP----LSEDAFVNATKLRTLYL 220
           +L  N+       +           + SL+L    L       L +        + +L L
Sbjct: 115 DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174

Query: 221 SGNPLS---AADLSVALKPL-TKLHRLSLRNCGLSRLPANTF-----HRFTCLQELDISH 271
            GN L+    A+L+  L  +   +  L L    L                  +  L++  
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 272 NPL----IDAFTALLSPLESLEHLDMGYSNLQRISR-------STFLKMTSLKTLILSGN 320
           N L    ++    L   L+ L+ + + Y  ++ +S+       + F  +  +  +  +G 
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 321 KL-----ETLESGLFQNLTHLSVLELNNCGLTRLNETVFH-ENYTYPD-LEELRLSGNPL 373
           ++       + + + +      V  L N  L    +   + E+   PD L E   +  PL
Sbjct: 295 EIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 51/359 (14%), Positives = 101/359 (28%), Gaps = 75/359 (20%)

Query: 16  NPGLITINLNANPIQPVEGAFLVAR-------SLLYLYMQECTLSKINPQFF-----TNL 63
             G+ +++L+ N +        + +       S+  L +   +L   N            
Sbjct: 21  PHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 64  TTLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNH 113
             +  L+LSGN L       +   +     ++  L L   + +         +  +    
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 114 LKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE 173
           + +L L  N L                            L   + A    + +LNL  N 
Sbjct: 140 ITSLNLRGNDLGI---------------------KSSDELIQILAAIPANVNSLNLRGNN 178

Query: 174 LID---LDVATTLGQNLVHLDSLDLSNCHL--KG--PLSEDAFVNATKLRTLYLSGNPLS 226
           L      ++A  L      + SLDLS   L  K    L+         + +L L  N L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 227 ---AADLSVALKPLTKLHRLSLRNCGLSRLP-------ANTFHRFTCLQELDISHNPLID 276
                +L +    L  L  + L    +  +           F     +  +D +   +  
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

Query: 277 AFTALLSPLESLEHLDMGYSNLQRISRSTFLKM------------TSLKTLILSGNKLE 323
           + +  +S    +  L         +++                    L+  I +   L 
Sbjct: 299 SHSIPIS--NLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 78.6 bits (194), Expect = 9e-16
 Identities = 52/364 (14%), Positives = 104/364 (28%), Gaps = 71/364 (19%)

Query: 159 ANNTWLRNLNLAENELIDLDV---ATTLGQNLVHLDSLDLSNCHLKGP----LSEDAFVN 211
           +    + +L+L+ N L  +               + SL+LS   L       L +     
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 212 ATKLRTLYLSGNPLS---AADLSVALK-PLTKLHRLSLRNCGLSRLPANTF-----HRFT 262
              + +L LSGN LS   + +L   L      +  L L     S   ++ F     +   
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 263 CLQELDISHNPLIDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTSL 312
            +  L++  N L           L +   ++  L++  +NL       +++       S+
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 313 KTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLTRLN----ETVFHENYTYPDL 363
            +L LS N L       L         H+  L L    L   +    + +         L
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH---L 255

Query: 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELR 423
           + + L  + +  +     +      P                 +           +  + 
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPN---------------IQK----------IILVD 290

Query: 424 LSGNPLH---VLPTGNLLPPQLSRLRSLDLSRCKIDY-----LPPNVFNNTRNITSLNLA 475
            +G  +H    +P  NL+     +     L    + +           N    +      
Sbjct: 291 KNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQT 350

Query: 476 NNNL 479
              L
Sbjct: 351 CKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 53/309 (17%), Positives = 98/309 (31%), Gaps = 78/309 (25%)

Query: 262 TCLQELDISHNPLIDA-----FTALLSPLESLEHLDMGYSNL-----QRISRSTFLKMTS 311
             +  LD+S N L          A  +   S+  L++  ++L       + +       +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 312 LKTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLT-----RLNETVFHENYTYP 361
           + +L LSGN L     + L   L      ++VL+L     +        +   +   +  
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS-- 139

Query: 362 DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEE 421
            +  L L GN L     S+ +                      L + +         +  
Sbjct: 140 -ITSLNLRGNDLG--IKSSDE----------------------LIQILAAIPAN---VNS 171

Query: 422 LRLSGNPL---------HVLPTGNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTR 467
           L L GN L           L +        + + SLDLS   +       L     +   
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIP------ASVTSLDLSANLLGLKSYAELAYIFSSIPN 225

Query: 468 NITSLNLANNNLSMTSELSF-QFLDVLLELESLDLSNNNLTHISP-------TVLRHNRA 519
           ++ SLNL  N L   S  +     D L  L+++ L  + + ++S            + + 
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 520 ITSIKLVGN 528
           I  +   G 
Sbjct: 286 IILVDKNGK 294

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 46/245 (18%), Positives = 74/245 (30%), Gaps = 55/245 (22%)

Query: 310 TSLKTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLT-----RLNETVFHENYT 359
             + +L LS N L       L          ++ L L+   L       L + +      
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
              +  L LSGN L      +                        L +T+    +T   +
Sbjct: 82  ---VTSLNLSGNFLS---YKSSDE---------------------LVKTLAAIPFT---I 111

Query: 420 EELRLSGNPL---HVLPTGNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITS 471
             L L  N                  + + SL+L    +       L   +     N+ S
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 472 LNLANNNLSMT--SELSFQFLDVLLELESLDLSNNNLTH-----ISPTVLRHNRAITSIK 524
           LNL  NNL+    +EL+     +   + SLDLS N L       ++         + S+ 
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 525 LVGNP 529
           L  N 
Sbjct: 232 LCLNC 236

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 36/197 (18%)

Query: 16  NPGLITINLNANPIQPVEGAFLVAR-------SLLYLYMQECTL-----SKINPQFFTNL 63
              + ++NL  N +   +    +A+       S+  L +    L     +++   F +  
Sbjct: 166 PANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 64  TTLNKLDLSGNPLRIIEPGV------FDPLTSLEYLMLNRCNLTYISP-------SAFDN 110
             +  L+L  N L    P +       D L  L+ + L+   +  +S        +AF N
Sbjct: 225 NHVVSLNLCLNCLH--GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 111 LNHLKTLELSQNKLKSHIDWTL--VLGNLG-KLDTLDLRQSGIS-----NLPDNVFANNT 162
           +  +  ++ +  ++       +  ++  L  K D   L    +                 
Sbjct: 283 IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD 342

Query: 163 WLRNLNLAENELIDLDV 179
            LR        L++   
Sbjct: 343 ELRESIQTCKPLLEHHH 359

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 88.5 bits (220), Expect = 9e-20
 Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 21/215 (9%)

Query: 62  NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
            L    K +L    +  +       L+ ++    +  N+  ++        +LK L LS 
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
           N++   +     L +L KL+ L + ++ + NL       +  L  L L  NEL D D   
Sbjct: 73  NQISD-LS---PLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDSL- 124

Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
               +L +L+ L + N  LK   S       +KL  L L GN ++  +    L  L K++
Sbjct: 125 ---IHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT--NTG-GLTRLKKVN 175

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID 276
            + L        P            +       I 
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 51/280 (18%), Positives = 90/280 (32%), Gaps = 57/280 (20%)

Query: 211 NATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDIS 270
                    L    ++  DL  + K L+ +   +  N  +  L       FT L+EL +S
Sbjct: 17  GLANAVKQNLGKQSVT--DLV-SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLS 71

Query: 271 HNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF 330
           HN + D   + L  L  LE L +  + L+ ++    +    L  L L  N+L   +S   
Sbjct: 72  HNQISD--LSPLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNNELRDTDS--L 124

Query: 331 QNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT 390
            +L +L +L + N  L  +    F        LE L L GN +      T+         
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLGFLSK-----LEVLDLHGNEITNTGGLTR--------- 170

Query: 391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDL 450
                                       +  + L+G         N        L   + 
Sbjct: 171 -------------------------LKKVNWIDLTGQKCV-----NEPVKYQPELYITNT 200

Query: 451 SRC-KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
            +     ++ P   +N  +     +       T E+S++F
Sbjct: 201 VKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 16/177 (9%)

Query: 17  PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
            G+   N + + IQ + G      +L  L++    +S ++P    +LT L +L ++ N L
Sbjct: 41  SGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97

Query: 77  RIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGN 136
           + +      P   L  L L+   L         +L +L+ L +  NKLKS I    +LG 
Sbjct: 98  KNLNGI---PSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKS-IV---MLGF 148

Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
           L KL+ LDL  + I+N           +  ++L   + ++  V       L   +++
Sbjct: 149 LSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPV--KYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 33/243 (13%), Positives = 73/243 (30%), Gaps = 55/243 (22%)

Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
              L +    ++G  ++  +   +  +++ ++      + +++L     Q  T+L  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHL 70

Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
           ++  ++ L+            LEEL ++ N L  L                         
Sbjct: 71  SHNQISDLSPLKDLTK-----LEELSVNRNRLKNL------------------------- 100

Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
                            L  L L  N L    +       L  L  L +   K+  +   
Sbjct: 101 ----------NGIPSACLSRLFLDNNELRDTDSLI----HLKNLEILSIRNNKLKSIVM- 145

Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
                  +  L+L  N ++     +   L  L ++  +DL+     +             
Sbjct: 146 -LGFLSKLEVLDLHGNEIT-----NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

Query: 522 SIK 524
           ++K
Sbjct: 200 TVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 14/163 (8%)

Query: 17  PGLITINLNANPIQPVEG-AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
             L  ++L+ N I  +     L    L  L +    L  +N         L++L L  N 
Sbjct: 63  TNLKELHLSHNQISDLSPLKDLT--KLEELSVNRNRLKNLNG---IPSACLSRLFLDNNE 117

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           LR  +      L +LE L +    L  I       L+ L+ L+L  N++ +       L 
Sbjct: 118 LRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG----LT 169

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD 178
            L K++ +DL      N P            +   +   I   
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 40/223 (17%), Positives = 65/223 (29%), Gaps = 49/223 (21%)

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
            I     +  +       L +     L    +T L   V  +  +   ++      + + 
Sbjct: 2   SIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDL---VSQKELSG--VQNFNGDNSNIQ 54

Query: 375 VLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY--------TYPDLEELRLSG 426
            L                     F   L  L+      N             LEEL ++ 
Sbjct: 55  SL-----------------AGMQFFTNLKELH---LSHNQISDLSPLKDLTKLEELSVNR 94

Query: 427 NPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELS 486
           N L  L            L  L L   ++         + +N+  L++ NN L      S
Sbjct: 95  NRLKNLNGIPSA-----CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-----S 142

Query: 487 FQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNP 529
              L  L +LE LDL  N +T+     L   + +  I L G  
Sbjct: 143 IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 16/169 (9%)

Query: 60  FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
              + +L  + L+   +  +     +   +++ L +N  + T  +P     L++L+ L +
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRI 95

Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
               + S  D    L  L  L  LD+  S   +           + +++L+ N  I    
Sbjct: 96  MGKDVTS--DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI---- 149

Query: 180 ATTLG--QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
            T +   + L  L SL++    +          +  KL  LY     + 
Sbjct: 150 -TDIMPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 18/193 (9%)

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
                    L QS  +N+ +    +   L  + LA   + DL   T + +   ++  L +
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDL---TGI-EYAHNIKDLTI 73

Query: 196 SNCHLK--GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRL 253
           +N H     P+S       + L  L + G  +++  +   L  LT L  L + +      
Sbjct: 74  NNIHATNYNPIS-----GLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDS 127

Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK 313
                +    +  +D+S+N  I     L   L  L+ L++ +  +             L 
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYR--GIEDFPKLN 184

Query: 314 TLILSGNKLETLE 326
            L      +   +
Sbjct: 185 QLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 8/159 (5%)

Query: 19  LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
           L  I L    +  + G    A ++  L +     +  NP   + L+ L +L + G  +  
Sbjct: 46  LTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTS 102

Query: 79  IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLG 138
            +      LTSL  L ++         +  + L  + +++LS N   + I     L  L 
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLP 159

Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL 177
           +L +L+++  G+ +       +   L  L      +   
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 8e-16
 Identities = 28/191 (14%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 61  TNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120
           +         L  +    I       + SL Y+ L   N+T ++    +  +++K L ++
Sbjct: 20  STFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74

Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
                ++ +    +  L  L+ L +    +++      +  T L  L+++ +   D  + 
Sbjct: 75  NIHA-TNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
                 L  ++S+DLS       +         +L++L +  + +   D    ++   KL
Sbjct: 131 KI--NTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVH--DYR-GIEDFPKL 183

Query: 241 HRLSLRNCGLS 251
           ++L   +  + 
Sbjct: 184 NQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 9e-15
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 44/224 (19%)

Query: 150 ISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF 209
             N+PD+ F       N  L ++   ++  A      +  L  + L+N ++         
Sbjct: 14  NVNIPDSTFKA---YLNGLLGQSSTANITEA-----QMNSLTYITLANINVT---DLTGI 62

Query: 210 VNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
             A  ++ L ++    +         P++ L                     + L+ L I
Sbjct: 63  EYAHNIKDLTINNIHATN------YNPISGL---------------------SNLERLRI 95

Query: 270 SHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGL 329
               +       LS L SL  LD+ +S       +    +  + ++ LS N   T    L
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155

Query: 330 FQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
            + L  L  L +   G+                L +L      +
Sbjct: 156 -KTLPELKSLNIQFDGVHDYRGIEDFPK-----LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 36/227 (15%), Positives = 68/227 (29%), Gaps = 49/227 (21%)

Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
           P  + +    G       +  T  +M SL  + L+   +  L     +   ++  L +NN
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 344 CGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILF 403
              T  N      N     LE LR+ G                 + +    N   L    
Sbjct: 76  IHATNYNPISGLSN-----LERLRIMGKD---------------VTSDKIPNLSGL---- 111

Query: 404 ILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC-KIDYLPPNV 462
                          L  L +S +         +    L ++ S+DLS    I  + P  
Sbjct: 112 -------------TSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDIMP-- 154

Query: 463 FNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI 509
                 + SLN+  + +       ++ ++   +L  L   +  +   
Sbjct: 155 LKTLPELKSLNIQFDGVH-----DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
           +++L ++           +    LS L  L +    +        +   ++T L+++++ 
Sbjct: 68  IKDLTINNIHATNY--NPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 479 LSMTSELSFQFLDVLLELESLDLSNNN-LTHISPTVLRHNRAITSIKLVGN 528
                +     ++ L ++ S+DLS N  +T I P  L+    + S+ +  +
Sbjct: 124 H---DDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 429 LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQ 488
           L    T N+   Q++ L  + L+   +  L         NI  L + N + +  + +S  
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISG- 86

Query: 489 FLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGN 528
               L  LE L +   ++T      L    ++T + +  +
Sbjct: 87  ----LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 18/213 (8%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
               K +L    +        + L S++ ++ N  ++   S      L +++ L L  NK
Sbjct: 19  AETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNK 74

Query: 124 LKSHIDWTLVLG---NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
           L         +     L  L  L L  + + +LP+ VF   T L+ L L EN+L  L   
Sbjct: 75  LHD-------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127

Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
             +   L +L  L+L++  L+  L +  F   T L  L LS N L +    V  K LT+L
Sbjct: 128 --VFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQL 183

Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNP 273
             L L    L  +P   F R T LQ + +  NP
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 67/237 (28%), Positives = 97/237 (40%), Gaps = 40/237 (16%)

Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
           T+ +        PD+ FA        NL +  + D          L  +D +  +N  +K
Sbjct: 2   TITVSTPIKQIFPDDAFAETI---KANLKKKSVTDAVT----QNELNSIDQIIANNSDIK 54

Query: 202 GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF 261
              S         +R L L GN L    +S  LK LT L  L L    L  LP   F + 
Sbjct: 55  ---SVQGIQYLPNVRYLALGGNKLHD--ISA-LKELTNLTYLILTGNQLQSLPNGVFDKL 108

Query: 262 TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNK 321
           T L+EL +  N                         LQ +    F K+T+L  L L+ N+
Sbjct: 109 TNLKELVLVEN------------------------QLQSLPDGVFDKLTNLTYLNLAHNQ 144

Query: 322 LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
           L++L  G+F  LT+L+ L+L+   L  L E VF +      L++LRL  N L  +PD
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK---LTQLKDLRLYQNQLKSVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 80.4 bits (199), Expect = 6e-17
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 9/157 (5%)

Query: 19  LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
           +  + L  N +  +  A     +L YL +    L  +    F  LT L +L L  N L+ 
Sbjct: 65  VRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123

Query: 79  IEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLG 135
           +  GVFD LT+L YL L    L  +    FD L +L  L+LS N+L+S     L   V  
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-----LPEGVFD 178

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
            L +L  L L Q+ + ++PD VF   T L+ + L +N
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 80.1 bits (198), Expect = 8e-17
 Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 46/249 (18%)

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
                ++   ++      T  ++ S+  +I + + +++++    Q L ++  L L    L
Sbjct: 20  ETIKANLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL 75

Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
             ++     E     +L  L L+GN L  LP+                 FD L       
Sbjct: 76  HDIS--ALKE---LTNLTYLILTGNQLQSLPNGV---------------FDKLT------ 109

Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT 466
                      +L+EL L  N L  LP G  +  +L+ L  L+L+  ++  LP  VF+  
Sbjct: 110 -----------NLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156

Query: 467 RNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLV 526
            N+T L+L+ N L    E  F   D L +L+ L L  N L  +   V     ++  I L 
Sbjct: 157 TNLTELDLSYNQLQSLPEGVF---DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213

Query: 527 GNPWKCDCN 535
            NPW C C 
Sbjct: 214 DNPWDCTCP 222

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 57/231 (24%), Positives = 88/231 (38%), Gaps = 40/231 (17%)

Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
               L +  +       +    L  +D +    S I ++          +R L L  N+L
Sbjct: 22  IKANLKKKSVTD----AVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKL 75

Query: 175 IDLDVATTLG--QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSV 232
                   +   + L +L  L L+   L+  L    F   T L+ L L  N L +    V
Sbjct: 76  ------HDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGV 128

Query: 233 ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD 292
               LT L  L+L +  L  LP   F + T L ELD+S+N                    
Sbjct: 129 -FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-------------------- 167

Query: 293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
                LQ +    F K+T LK L L  N+L+++  G+F  LT L  + L++
Sbjct: 168 ----QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 1e-18
 Identities = 53/328 (16%), Positives = 90/328 (27%), Gaps = 63/328 (19%)

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL--TKLHRL 243
               L+ L                + +  L+ L +    + +  L  AL+ L  + L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 244 SLRNCGLSRLPANTFHRFTC--LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
           +L N  ++          T   L  L++ +                             +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT--------------------RDAWL 140

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCGLTRLNETVFHENYTY 360
           +         LK L ++            +    LS L+L +N  L             +
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
           P L+ L L                M T                               L+
Sbjct: 201 PTLQVLALRNA------------GMETPSGVCSALAAAR-----------------VQLQ 231

Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
            L LS N L     G       S+L SL+LS   +  +P  +      ++ L+L+ N L 
Sbjct: 232 GLDLSHNSLRDAA-GAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLD 287

Query: 481 MTSELSFQFLDVLLELESLDLSNNNLTH 508
                     D L ++ +L L  N    
Sbjct: 288 -----RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 1e-18
 Identities = 52/297 (17%), Positives = 84/297 (28%), Gaps = 30/297 (10%)

Query: 98  CNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNV 157
           CN +   P      N L   ++            L  G       L    +         
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVE-----------LYGGGRSLEYLLKRVDTEADLGQFTD 63

Query: 158 FANNTWLRNLNLAENELIDLDVATTLG-QNLVHLDSLDLSNCHLKGP-LSEDAFVNATKL 215
              +  L+ L +    +    +   L    +  L  L L N  + G             L
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 216 RTLYLSGNPLSAADLSVALKP---LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
             L L     +  D  +A         L  LS+               F  L  LD+S N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 273 PLIDAFTAL-------LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL-ET 324
           P +     +          L+ L   + G      +  +       L+ L LS N L + 
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 325 LESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK 381
             +      + L+ L L+  GL ++ + +         L  L LS N L   P   +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP------AKLSVLDLSYNRLDRNPSPDE 294

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 55/295 (18%), Positives = 96/295 (32%), Gaps = 41/295 (13%)

Query: 40  RSLLYLYMQECTLSKINPQF-FTNLTTLNKLDLSGNPL---RIIEPGVFDPLTSLEYLML 95
           RSL YL  +  T + +          +L +L +    +    +        ++ L+ L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 96  NRCNLTYISPSAFDNLNH--LKTLELSQNKLKSHIDWTLVLGNLGK--LDTLDLRQSGIS 151
               +T  +P          L  L L      +   W   L    K  L  L + Q+   
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 152 NLPDNVFANNTWLRNLNLAENELIDLD--VATTLGQNLVHLDSLDLSNCHLK--GPLSED 207
           N           L  L+L++N  +     ++         L  L L N  ++    +   
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQEL 267
                 +L+ L LS N L  A  + +    ++L+ L+L   GL ++P     +   L  L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVL 279

Query: 268 DISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL 322
           D+S+N                         L R       ++  +  L L GN  
Sbjct: 280 DLSYN------------------------RLDRNPS--PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.9 bits (202), Expect = 4e-17
 Identities = 47/251 (18%), Positives = 74/251 (29%), Gaps = 37/251 (14%)

Query: 35  AFLVARSLLYLYMQECTLSKINPQ--FFTNLTTLNKLDLSGNPLRIIEPGVFD----PLT 88
             L    L  L ++   ++   P          LN L+L        +  + +       
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 89  SLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKS--HIDWTLVLGNLGKLDTLDLR 146
            L+ L + + +    S         L TL+LS N       +   L       L  L LR
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 147 QSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE 206
            +G+        A       L                         LDLS+  L+     
Sbjct: 210 NAGMETPSGVCSALAAARVQLQ-----------------------GLDLSHNSLRDAAGA 246

Query: 207 DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQE 266
            +    ++L +L LS   L      V      KL  L L    L R P+        +  
Sbjct: 247 PSCDWPSQLNSLNLSFTGLK----QVPKGLPAKLSVLDLSYNRLDRNPS--PDELPQVGN 300

Query: 267 LDISHNPLIDA 277
           L +  NP +D+
Sbjct: 301 LSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.0 bits (179), Expect = 3e-14
 Identities = 40/269 (14%), Positives = 77/269 (28%), Gaps = 25/269 (9%)

Query: 253 LPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSL 312
           L          L+ +D   +            L+ L        +         L ++ L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 313 KTLILSGNKL--ETLESGLFQNLTHLSVLELNNCGLTRLNETVFH-ENYTYPDLEELRLS 369
           + L L   ++        L      L++L L N      +  +   + +  P L+ L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI---LFILNETVFHE--NYTYPDLEELRL 424
                                +++     L +     +    +        +P L+ L L
Sbjct: 158 QAHSLNFSCEQ---------VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 425 SGNPLHVLP-TGNLLPPQLSRLRSLDLSRCKIDYLPPNV-FNNTRNITSLNLANNNLSMT 482
               +       + L     +L+ LDLS   +         +    + SLNL+   L   
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 483 SELSFQFLDVLLELESLDLSNNNLTHISP 511
            +          +L  LDLS N L     
Sbjct: 269 PKGLPA------KLSVLDLSYNRLDRNPS 291

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 7e-13
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 20/203 (9%)

Query: 13  NLDNPGLITINLNANPIQPVEGAF-----LVARSLLYLYMQECTLSKINPQFFTNLTTLN 67
               P L  +NL        +         +   L  L + +      + +       L+
Sbjct: 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 68  KLDLSGNPLR----IIEPGVFDPLTSLEYLMLNRCNLTYIS---PSAFDNLNHLKTLELS 120
            LDLS NP      +I         +L+ L L    +   S    +       L+ L+LS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
            N L+             +L++L+L  +G+  +P  + A    L  L+L+ N L      
Sbjct: 237 HNSLRDAAG-APSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNP-- 290

Query: 181 TTLGQNLVHLDSLDLSNCHLKGP 203
                 L  + +L L        
Sbjct: 291 --SPDELPQVGNLSLKGNPFLDS 311

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 88.5 bits (219), Expect = 2e-18
 Identities = 77/491 (15%), Positives = 153/491 (31%), Gaps = 60/491 (12%)

Query: 60  FTNLTTLNKLDLSGNP-------LRIIEPGVFDP--------LTSLEYLMLNRCNLT--Y 102
           F NL     L L G P       +     G   P        L  L+ +   R  ++   
Sbjct: 72  FPNLR---SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA--- 159
           +   A    + L+TL+L +    +      ++ +  K+ TL + +S  S           
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 160 -NNTWLRNLNLAENELIDLDVA--TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA-TKL 215
            +NT L  LN    E   +      T+ +N   L S+ + +  +   +          + 
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
               L+ +     +  + L    KL RL L   G + +P   F     +++LD+ +  L 
Sbjct: 249 CGGSLNEDI-GMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLE 306

Query: 276 -DAFTALLSPLESLEHLDMGY----SNLQRISRSTFLKMTSLKTLILSGNKLETLESG-- 328
            +    L+    +LE L+         L+ +++        LK L +     E       
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY----CKQLKRLRIERGADEQGMEDEE 362

Query: 329 ----------LFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG-NPLHVLP 377
                     L Q    L  + +    +T  NE++        +L + RL   +    + 
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDIT--NESLESIGTYLKNLCDFRLVLLDREERIT 420

Query: 378 DSTKQYSMRTIPTQIWKNFDFLVILF----ILNETVFHENYTYPDLEELRLSGNPLHVLP 433
           D      +R++     K             + +  + +     P++  + L         
Sbjct: 421 DLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479

Query: 434 TGNLLPPQLSRLRSLDLSRCKI-DYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDV 492
                      L+ L++  C   +           ++  L +     SMT +   Q    
Sbjct: 480 LMEFSR-GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARP 538

Query: 493 LLELESLDLSN 503
              +E +    
Sbjct: 539 YWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 76.1 bits (187), Expect = 1e-14
 Identities = 55/396 (13%), Positives = 113/396 (28%), Gaps = 48/396 (12%)

Query: 17  PGLITINLNANPIQPVEGAFLVA-----RSLLYLYMQECTLSKINPQ----FFTNLTTLN 67
             + T+ +  +     +G +L        SL  L       +KI+P+       N  +L 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 68  KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSH 127
            + +    + +   G F    +LE       N     P  + NL   + L          
Sbjct: 224 SVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 128 IDWTLVLGNLGKLDTLDLRQ-SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQN 186
            +  ++     ++  LDL      +     +      L  L    N + D  +   L Q 
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEV-LAQY 340

Query: 187 LVHLDSLDLSNCH-------LKGPLSEDAFV----NATKLRTLYLSGNPL---SAADLSV 232
              L  L +            +G +S+   +       +L  + +  + +   S   +  
Sbjct: 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400

Query: 233 ALKPLTKLHRLSLRNC------GLSRLPANTFHRFTCLQELDISHNPLI---DAFTALLS 283
            LK L     + L          L     +       L+                + +  
Sbjct: 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460

Query: 284 PLESLEHLDMGYSN-----LQRISRSTFLKMTSLKTLILSGNKL--ETLESGLFQNLTHL 336
              ++  + +GY       L   SR       +L+ L + G       + +     L  L
Sbjct: 461 YSPNVRWMLLGYVGESDEGLMEFSRG----CPNLQKLEMRGCCFSERAIAA-AVTKLPSL 515

Query: 337 SVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
             L +     +   + +      Y ++E +     P
Sbjct: 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.0 bits (171), Expect = 1e-12
 Identities = 66/487 (13%), Positives = 140/487 (28%), Gaps = 74/487 (15%)

Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
                   +L++L+L      +   + L+  N G   T  + +         +  N   L
Sbjct: 66  DRLSRRFPNLRSLKLKGKPRAA--MFNLIPENWGGYVTPWVTE---------ISNNLRQL 114

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAF----VNATKLRTLYL 220
           ++++     + DLD+          L++L L  C      + D       +  K++TL +
Sbjct: 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG---FTTDGLLSIVTHCRKIKTLLM 171

Query: 221 SGNPLSAAD---LSVALKPLTKLHRLSLRNCGLSRLPANT----FHRFTCLQELDISHNP 273
             +  S  D   L    +  T L  L+      +++              L  + +    
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231

Query: 274 LIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES--GLFQ 331
           +++          +LE    G  N        ++ +   + L   G           LF 
Sbjct: 232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290

Query: 332 NLTHLSVLELNNC---------------GLTRLN-------ETVFHENYTYPDLEELRLS 369
               +  L+L                   L  L          +         L+ LR+ 
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350

Query: 370 GNP-LHVLPDSTKQYSMRTIPTQIWKNFDFLVIL-----FILNETVFHENYTYPDLEELR 423
                  + D     S R +   + +    L  +      I NE++        +L + R
Sbjct: 351 RGADEQGMEDEEGLVSQRGL-IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409

Query: 424 LSG----NPLHVLPTGNLLPPQLS---RLRSLDLSRCKI---DYLPPNVFNNTRNITSLN 473
           L        +  LP  N +   L    +LR       +    D     +   + N+  + 
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469

Query: 474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS-PTVLRHNRAITSIKLVGNPWKC 532
           L     S    +   F      L+ L++     +  +    +    ++  + + G     
Sbjct: 470 LGYVGESDEGLME--FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG----Y 523

Query: 533 DCNIADM 539
             ++   
Sbjct: 524 RASMTGQ 530

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 9e-08
 Identities = 35/299 (11%), Positives = 83/299 (27%), Gaps = 37/299 (12%)

Query: 17  PGLITINLNANPIQPVEGAFLVA--RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
             +  ++L    ++  +   L+    +L  L  +     +           L +L +   
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352

Query: 75  PLRIIEPGVFDPLT------------SLEYLMLNRCNLTYISPSAF-DNLNHLKTLELSQ 121
                       ++             LEY+ +   ++T  S  +    L +L    L  
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN-ELIDLDVA 180
              +  I    +   +  L         +             LR          +     
Sbjct: 413 LDREERITDLPLDNGVRSL---------LIGCKK--------LRRFAFYLRQGGLTDLGL 455

Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
           + +GQ   ++  + L           +       L+ L + G   S   ++ A+  L  L
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515

Query: 241 HRLSLRNCGLSRLPANTFHR---FTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS 296
             L ++    S    +       +  ++ +     P ++     +  +E   H+   YS
Sbjct: 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQ-QGEIREMEHPAHILAYYS 573

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 39/287 (13%), Positives = 81/287 (28%), Gaps = 16/287 (5%)

Query: 241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR 300
             +++  C  +  P     RF  L+ L +   P    F   L P     ++    + +  
Sbjct: 53  EHVTMALCY-TATPDRLSRRFPNLRSLKLKGKPRAAMFN--LIPENWGGYVTPWVTEI-- 107

Query: 301 ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC-GLTRLNETVFHENYT 359
            +    LK    + +I+S   L+ L      +L  L    L+ C G T   + +      
Sbjct: 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK---LDKCSGFT--TDGLLSIVTH 162

Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
              ++ L +  +              +   +    NF       I  + +         L
Sbjct: 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222

Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
             +++    +  L         L       L+               R +  L L+    
Sbjct: 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY--- 279

Query: 480 SMTSELSFQFLDVLLELESLDLSN-NNLTHISPTVLRHNRAITSIKL 525
            M             ++  LDL      T    T+++    +  ++ 
Sbjct: 280 -MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 8e-07
 Identities = 60/406 (14%), Positives = 116/406 (28%), Gaps = 81/406 (19%)

Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC--------------HLKGPLSE 206
           +    ++ +A       D    L +   +L SL L                     P   
Sbjct: 49  SETREHVTMALCYTATPD---RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVT 105

Query: 207 DAFVNATKLRTLYLSGNPLSAADL-SVALKPLTKLHRLSLRNC------GLSRLPANTFH 259
           +   N  +L++++     +S  DL  +A      L  L L  C      GL  +      
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSI----VT 161

Query: 260 RFTCLQELDISHNPLID----AFTALLSPLESLEHLDMGYSNLQRIS----RSTFLKMTS 311
               ++ L +  +   +        L     SLE L+   +   +IS     +      S
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
           L ++ +   ++  L  G F+   +L      +          +        L  L LS  
Sbjct: 222 LVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280

Query: 372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL-----FILNETVFHENYTYPDLEELRLSG 426
             + +P              ++     +  L      +  E         P+LE L    
Sbjct: 281 GPNEMPI-------------LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327

Query: 427 ----NPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT 482
                 L VL           +L+ L + R   +    +          + LA       
Sbjct: 328 VIGDRGLEVLAQY------CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG----- 376

Query: 483 SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN-RAITSIKLVG 527
                       ELE + +  +++T+ S   +    + +   +LV 
Sbjct: 377 ----------CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.9 bits (211), Expect = 4e-18
 Identities = 62/281 (22%), Positives = 102/281 (36%), Gaps = 23/281 (8%)

Query: 50  CTLSKINPQFFTNLTTLNKLDLSGNPLR---IIEPGVFDPLTSLEYLML-NRCNLTYISP 105
            T   +     T    +N LDLSG  L     I   + + L  L +L +    NL    P
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIP 94

Query: 106 SAFDNLNHLKTLELSQNKLKSHI-DWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTW 163
            A   L  L  L ++   +   I D+   L  +  L TLD   + +S  LP +  ++   
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDF---LSQIKTLVTLDFSYNALSGTLPPS-ISSLPN 150

Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLD-SLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
           L  +    N +    +  + G +   L  S+ +S   L G +          L  + LS 
Sbjct: 151 LVGITFDGNRISG-AIPDSYG-SFSKLFTSMTISRNRLTGKIPPT--FANLNLAFVDLSR 206

Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLIDAFTAL 281
           N L   D SV         ++ L    L+  L          L  LD+ +N +       
Sbjct: 207 NMLE-GDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 282 LSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNK 321
           L+ L+ L  L++ ++NL   I +     +        + NK
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.6 bits (179), Expect = 5e-14
 Identities = 58/303 (19%), Positives = 101/303 (33%), Gaps = 54/303 (17%)

Query: 97  RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLR---------Q 147
                 +          +  L+LS   L         L NL  L+ L +           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
             I+ L          L  L +    +    +   L   +  L +LD S   L G L   
Sbjct: 95  PAIAKLTQ--------LHYLYITHTNVSG-AIPDFLS-QIKTLVTLDFSYNALSGTLPPS 144

Query: 208 AFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR-LSLRNCGLS-RLPANTFHRFTCLQ 265
              +   L  +   GN +S A +  +    +KL   +++    L+ ++P  TF     L 
Sbjct: 145 -ISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LA 200

Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLET 324
            +D+S N L    + L    ++ + + +  ++L   + +       +L  L L  N++  
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRI-- 256

Query: 325 LESGL----FQNLTHLSVLEL--NN-CG-------LTRLNETVFHENYTYPDLEELRLSG 370
              G        L  L  L +  NN CG       L R + + +  N          L G
Sbjct: 257 --YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN--------KCLCG 306

Query: 371 NPL 373
           +PL
Sbjct: 307 SPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 68.7 bits (169), Expect = 8e-13
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 20/194 (10%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL--RIIEPGVFDPLTSLEYLMLNR 97
             L YLY+    +S   P F + + TL  LD S N L   +  P     L +L  +  + 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDG 158

Query: 98  CNLTYISPSAFDNLNHLKT-LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPD 155
             ++   P ++ + + L T + +S+N+L   I  T    NL  L  +DL ++ +  +   
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANL-NLAFVDLSRNMLEGDASV 215

Query: 156 NVFANNTWLRNLNLAENEL---IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA 212
             F ++   + ++LA+N L   +       +G    +L+ LDL N  + G L +      
Sbjct: 216 L-FGSDKNTQKIHLAKNSLAFDL-----GKVG-LSKNLNGLDLRNNRIYGTLPQG-LTQL 267

Query: 213 TKLRTLYLSGNPLS 226
             L +L +S N L 
Sbjct: 268 KFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 52/274 (18%), Positives = 88/274 (32%), Gaps = 82/274 (29%)

Query: 256 NTFHRFTCLQELDISHNPLIDAFTALLSP----LESLEHLDMGYSNLQRISR---STFLK 308
           +T  +   +  LD+S   L       +      L  L  L +G  N   +         K
Sbjct: 44  DTDTQTYRVNNLDLSGLNL--PKPYPIPSSLANLPYLNFLYIGGIN--NLVGPIPPAIAK 99

Query: 309 MTSLKTLILSGNKLETLESGL----FQNLTHLSVLELNNCGLT--------RLNETVFHE 356
           +T L  L ++   +    SG        +  L  L+ +   L+         L       
Sbjct: 100 LTQLHYLYITHTNV----SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL------- 148

Query: 357 NYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY 416
               P+L  +   GN +              IP     +F  L                 
Sbjct: 149 ----PNLVGITFDGNRIS-----------GAIPDSYG-SFSKL----------------- 175

Query: 417 PDLEELRLSGNPLHVLPTGNLLPPQLSR--LRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
                + +S N L    TG + PP  +   L  +DLSR  ++     +F + +N   ++L
Sbjct: 176 --FTSMTISRNRL----TGKI-PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 475 ANNNLSMT-SELSFQFLDVLLELESLDLSNNNLT 507
           A N+L+    ++          L  LDL NN + 
Sbjct: 229 AKNSLAFDLGKVGL-----SKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 59/303 (19%), Positives = 107/303 (35%), Gaps = 63/303 (20%)

Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS-AADLSVALKPLTKLHRLSLRN-C 248
            + D  N    G L  D      ++  L LSG  L     +  +L  L  L+ L +    
Sbjct: 29  PTTDCCNRTWLGVLC-DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 249 GLS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTF 306
            L   +P     + T L  L I+H  +  A    LS +++L  LD  Y+ L   +  S  
Sbjct: 88  NLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-I 145

Query: 307 LKMTSLKTLILSGNKLETLESGL----FQNLTHLS-VLELNNCGLT-RLNETVFHENYTY 360
             + +L  +   GN++    SG     + + + L   + ++   LT ++  T  + N  +
Sbjct: 146 SSLPNLVGITFDGNRI----SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201

Query: 361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
            DL    L G+                       +                      + +
Sbjct: 202 VDLSRNMLEGD----------------ASVLFGSD---------------------KNTQ 224

Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSL---DLSRCKIDYLPPNVFNNTRNITSLNLANN 477
           ++ L+ N L      +L   ++   ++L   DL   +I    P      + + SLN++ N
Sbjct: 225 KIHLAKNSL----AFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 478 NLS 480
           NL 
Sbjct: 279 NLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 19/117 (16%)

Query: 419 LEELRLSGNPLHVLPTGNLLPP---QLSRLRSLDLSRCKID-YLPPNVFNNTRNITSLNL 474
           L  L  S N L    +G L PP    L  L  +     +I   +P +  + ++  TS+ +
Sbjct: 127 LVTLDFSYNAL----SGTL-PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 475 ANNNLSMT--SELSFQFLDVLLELESLDLSNNNLT-HISPTVLRHNRAITSIKLVGN 528
           + N L+       +       L L  +DLS N L    S      ++    I L  N
Sbjct: 182 SRNRLTGKIPPTFA------NLNLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKN 231

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
            LY+ +  ++K+ P  F +L  L +L L  N L  +  GVFD LT L  L L    LT +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG--NLGKLDTLDLRQSGISNLPDNVFANN 161
             + FD L HLK L +  NKL       L  G   L  L  L L Q+ + ++P   F   
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 162 TWLRNLNLAEN 172
           + L +  L  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 30/161 (18%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
           T    L L  N +  +EPGVFD L +L+ L L    L  +    FD+L  L  L+L  N+
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
           L                            LP  VF     L+ L +  N+L +L      
Sbjct: 100 LTV--------------------------LPSAVFDRLVHLKELFMCCNKLTELPRGI-- 131

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
            + L HL  L L    LK  +   AF   + L   YL GNP
Sbjct: 132 -ERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 76.3 bits (188), Expect = 7e-16
 Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 23  NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
            L+ N I  +E G F    +L  LY+    L  +    F +LT L  LDL  N L ++  
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105

Query: 82  GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD 141
            VFD L  L+ L +    LT + P   + L HL  L L QN+LKS          L  L 
Sbjct: 106 AVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHG--AFDRLSSLT 162

Query: 142 TLDL 145
              L
Sbjct: 163 HAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 17/135 (12%)

Query: 405 LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFN 464
           L   VF       +L+EL L  N L  LP G  +   L++L  LDL   ++  LP  VF+
Sbjct: 55  LEPGVFDS---LINLKELYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVLPSAVFD 109

Query: 465 NTRNITSLNLANNNLSMTSELSFQFL----DVLLELESLDLSNNNLTHISPTVLRHNRAI 520
              ++  L +  N L          L    + L  L  L L  N L  I         ++
Sbjct: 110 RLVHLKELFMCCNKL--------TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 521 TSIKLVGNPWKCDCN 535
           T   L GNPW C+C 
Sbjct: 162 THAYLFGNPWDCECR 176

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 15/153 (9%)

Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
           +C  K   S  A +     + LYL  N ++  +       L  L  L L +  L  LP  
Sbjct: 25  DCRSKRHASVPAGIPTNA-QILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVG 82

Query: 257 TFHRFTCLQELDISHNPLIDAFTALLSP------LESLEHLDMGYSNLQRISRSTFLKMT 310
            F   T L  LD+  N L    T L  P      L  L+ L M  + L  + R    ++T
Sbjct: 83  VFDSLTQLTVLDLGTNQL----TVL--PSAVFDRLVHLKELFMCCNKLTELPRG-IERLT 135

Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
            L  L L  N+L+++  G F  L+ L+   L  
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 38/168 (22%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
           T+ + L L  N++  LE G+F +L +L  L L +  L  L   VF        L  L L 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---LTQLTVLDLG 96

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
            N L VLP +                FD LV                  L+EL +  N L
Sbjct: 97  TNQLTVLPSAV---------------FDRLV-----------------HLKELFMCCNKL 124

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
             LP G     +L+ L  L L + ++  +P   F+   ++T   L  N
Sbjct: 125 TELPRG---IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 191 DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL 250
             L L +  +   L    F +   L+ LYL  N L A  + V    LT+L  L L    L
Sbjct: 43  QILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGTNQL 100

Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTAL---LSPLESLEHLDMGYSNLQRISRSTFL 307
           + LP+  F R   L+EL +  N L    T L   +  L  L HL +  + L+ I    F 
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKL----TELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 308 KMTSLKTLILSGN 320
           +++SL    L GN
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
             L L  + I+ L   VF +   L+ L L  N+L  L V   +  +L  L  LDL    L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQL 100

Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
              L    F     L+ L++  N L+   L   ++ LT L  L+L    L  +P   F R
Sbjct: 101 TV-LPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 261 FTCLQELDISHNP 273
            + L    +  NP
Sbjct: 158 LSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 34/137 (24%), Positives = 47/137 (34%), Gaps = 28/137 (20%)

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
            L L +  +++L    F     L+EL +  N                         L  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSN------------------------QLGAL 79

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
               F  +T L  L L  N+L  L S +F  L HL  L +    LT L   +  E  T  
Sbjct: 80  PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI--ERLT-- 135

Query: 362 DLEELRLSGNPLHVLPD 378
            L  L L  N L  +P 
Sbjct: 136 HLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
           + L +  + + ++    F  + +LK L L  N+L  L  G+F +LT L+VL+L    LT 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPD 378
           L   VF        L+EL +  N L  LP 
Sbjct: 103 LPSAVFDR---LVHLKELFMCCNKLTELPR 129

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 86.9 bits (215), Expect = 5e-18
 Identities = 80/509 (15%), Positives = 151/509 (29%), Gaps = 104/509 (20%)

Query: 56  NPQFFTNLTTLNKLDLSGNP-------LRIIEPGVFDPL--------TSLEYLMLNRCNL 100
                     +  ++L G P       +     G   P         T LE + L R  +
Sbjct: 58  PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV 117

Query: 101 TYISPSAF-DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
           T         +  + K L LS  +  S      +      L  LDLR+S + ++  +  +
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177

Query: 160 ----NNTWLRNLNLAE-NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATK 214
                 T L +LN++     +       L     +L SL L+       L+      A +
Sbjct: 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQ 236

Query: 215 LRTLYLSG-----NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDI 269
           L  L   G      P   + LSVAL    +L  LS     +       +   + L  L++
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL 296

Query: 270 SHNPLID-------------------------AFTALLSPLESLEHLDMGYSNLQRISRS 304
           S+  +                               L S  + L  L +  S    +  +
Sbjct: 297 SYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356

Query: 305 TFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL-NNCGLTRLNETVFHENYTYPDL 363
             L    L ++ +   KLE++     + +T+ +++ +  N                 P++
Sbjct: 357 VALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNR----------------PNM 399

Query: 364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELR 423
              RL           T +                      L+           DL  L 
Sbjct: 400 TRFRLCIIEPKAPDYLTLE---------------------PLDIGFGAIVEHCKDLRRLS 438

Query: 424 LSG----NPLHVLPTGNLLPPQLSRLRSLDLSRCKI-DYLPPNVFNNTRNITSLNLANNN 478
           LSG         + T         ++  L ++     D    +V +   ++  L + +  
Sbjct: 439 LSGLLTDKVFEYIGTY------AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492

Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLT 507
                +        L  + SL +S+ +++
Sbjct: 493 F--GDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 52/365 (14%), Positives = 101/365 (27%), Gaps = 56/365 (15%)

Query: 40  RSLLYLYMQECTLSKINPQ----FFTNLTTLNKLDLSGNPLRIIEPGV---FDPLTSLEY 92
           R+L  L ++E  +  ++      F    T+L  L++S     +    +        +L+ 
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 93  LMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISN 152
           L LNR        +       L+ L       +   D    L             SG  +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 153 LPDN----VFANNTWLRNLNLAENELIDLDVA-----------------------TTLGQ 185
                   V++  + L  LNL+   +   D+                          L  
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 186 NLVHLDSLDLSNCHLK-----GPLSEDAFV----NATKLRTLYLSGNPLSAADLSVALKP 236
               L  L +             L+E   V       KL ++      ++ A L    + 
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395

Query: 237 LTKLHRLSLRNCGLSRLPANTF-----------HRFTCLQELDISHNPLIDAFTALLSPL 285
              + R  L           T                 L+ L +S       F  + +  
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 286 ESLEHLDMGYSNLQRISRSTFLK-MTSLKTLILSGNKLETLES-GLFQNLTHLSVLELNN 343
           + +E L + ++    +     L    SL+ L +                L  +  L +++
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

Query: 344 CGLTR 348
           C ++ 
Sbjct: 516 CSVSF 520

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 68/399 (17%), Positives = 120/399 (30%), Gaps = 63/399 (15%)

Query: 163 WLRNLNLAENELIDLDVATTLGQNLV----HLDSLDLSNC--------------HLKGPL 204
           W         ++   +        ++     + S++L                     P 
Sbjct: 37  WYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPW 96

Query: 205 SEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC------GLSRLPANTF 258
            E    + T L  + L    ++   L +  K       L L +C      GL+ + A   
Sbjct: 97  IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT-- 154

Query: 259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS 318
                L+ELD+  + + D           L H    Y++L  ++ S      S   L   
Sbjct: 155 --CRNLKELDLRESDVDDVS------GHWLSHFPDTYTSLVSLNISCLASEVSFSALER- 205

Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD 378
                     L     +L  L+LN         T+       P LEEL   G    V PD
Sbjct: 206 ----------LVTRCPNLKSLKLNRAVPLEKLATLLQRA---PQLEELGTGGYTAEVRPD 252

Query: 379 STKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY-PDLEELRLSGNPLHVLPTGNL 437
               YS  ++     K    L   +          Y+    L  L LS   +        
Sbjct: 253 V---YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS-YDLVK 308

Query: 438 LPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE-- 495
           L  Q  +L+ L +     D     + +  +++  L +  +      E +    +  L   
Sbjct: 309 LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE-PFVMEPNVALTEQGLVSV 367

Query: 496 ------LESLDLSNNNLTHIS-PTVLRHNRAITSIKLVG 527
                 LES+      +T+ +  T+ R+   +T  +L  
Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 30/249 (12%)

Query: 17  PGLITINLNANPIQPVEGAFLVAR--SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
             L T+NL+   +Q  +   L+ +   L  L++ +           +    L +L +  +
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS 348

Query: 75  PLRIIEPG----------VFDPLTSLEYLMLNRCNLTYISPSAF-DNLNHLKTLELSQNK 123
              ++EP           V      LE ++     +T  +      N  ++    L   +
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
            K+    TL   +            G   +      +   LR L+L  + L+   V   +
Sbjct: 409 PKAPDYLTLEPLD-----------IGFGAI----VEHCKDLRRLSL--SGLLTDKVFEYI 451

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
           G     ++ L ++                  LR L +   P     L      L  +  L
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511

Query: 244 SLRNCGLSR 252
            + +C +S 
Sbjct: 512 WMSSCSVSF 520

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 8/132 (6%)

Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
           YL ++  +L  +    F  LT+L +L L GN L+ +  GVF+ LTSL YL L+   L  +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFAN 160
               FD L  LK L L+ N+L+S     L   V   L +L  L L Q+ + ++PD VF  
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQS-----LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

Query: 161 NTWLRNLNLAEN 172
            T L+ + L +N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 23  NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
           +L  N ++ +  G F    SL  LY+    L  +    F  LT+L  L+LS N L+ +  
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93

Query: 82  GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD 141
           GVFD LT L+ L LN   L  +    FD L  LK L L QN+LKS  D   V   L  L 
Sbjct: 94  GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG--VFDRLTSLQ 151

Query: 142 TLDL 145
            + L
Sbjct: 152 YIWL 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 73.2 bits (180), Expect = 7e-15
 Identities = 49/166 (29%), Positives = 63/166 (37%), Gaps = 39/166 (23%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
                LDL  N L+ +  GVFD LTSL  L L    L  +    F+ L  L  L LS N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL-----D 178
           L+S                          LP+ VF   T L+ L L  N+L  L     D
Sbjct: 88  LQS--------------------------LPNGVFDKLTQLKELALNTNQLQSLPDGVFD 121

Query: 179 VATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
                   L  L  L L    LK  + +  F   T L+ ++L  NP
Sbjct: 122 -------KLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 19  LITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR 77
           L  + L  N +Q +  G F    SL YL +    L  +    F  LT L +L L+ N L+
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113

Query: 78  IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
            +  GVFD LT L+ L L +  L  +    FD L  L+ + L  N
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 46/148 (31%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 388 IPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRS 447
           IP Q          L  L   VF E      L +L L GN L  LP G  +  +L+ L  
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDE---LTSLTQLYLGGNKLQSLPNG--VFNKLTSLTY 80

Query: 448 LDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLT 507
           L+LS  ++  LP  VF+    +  L L  N L    +  F   D L +L+ L L  N L 
Sbjct: 81  LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF---DKLTQLKDLRLYQNQLK 137

Query: 508 HISPTVLRHNRAITSIKLVGNPWKCDCN 535
            +   V     ++  I L  NPW C C 
Sbjct: 138 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
            L L    L  LP   F   T L +L +  N L      + + L SL +L++  + LQ +
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
               F K+T LK L L+ N+L++L  G+F  LT L  L L    L  + + VF +  T  
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF-DRLT-- 148

Query: 362 DLEELRLSGNP 372
            L+ + L  NP
Sbjct: 149 SLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
            +LD+  ++L+ +    F ++TSL  L L GNKL++L +G+F  LT L+ L L+   L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPD 378
           L   VF +      L+EL L+ N L  LPD
Sbjct: 91  LPNGVFDK---LTQLKELALNTNQLQSLPD 117

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
             LDL  + + +LP+ VF   T L  L L  N+L  L     +   L  L  L+LS   L
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG--VFNKLTSLTYLNLSTNQL 88

Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
           +  L    F   T+L+ L L+ N L +    V  K LT+L  L L    L  +P   F R
Sbjct: 89  QS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDR 146

Query: 261 FTCLQELDISHNP 273
            T LQ + +  NP
Sbjct: 147 LTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 37/168 (22%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
                L L  N L++L +G+F  LT L+ L L    L  L   VF++      L  L LS
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK---LTSLTYLNLS 84

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
            N L  LP+                 FD L                   L+EL L+ N L
Sbjct: 85  TNQLQSLPNGV---------------FDKLT-----------------QLKELALNTNQL 112

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
             LP G  +  +L++L+ L L + ++  +P  VF+   ++  + L +N
Sbjct: 113 QSLPDG--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 43  LYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY 102
           LYL   + TL    P+  +N   L  +DLS N +  +    F  +T L  L+L+   L  
Sbjct: 36  LYLDGNQFTLV---PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 103 ISPSAFDNLNHLKTLELSQNKLKS 126
           I P  FD L  L+ L L  N +  
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISV 116

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 31/99 (31%), Positives = 49/99 (49%)

Query: 24  LNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGV 83
           L+ N    V       + L  + +    +S ++ Q F+N+T L  L LS N LR I P  
Sbjct: 38  LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97

Query: 84  FDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
           FD L SL  L L+  +++ +   AF++L+ L  L +  N
Sbjct: 98  FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
           D+ EL L GN   ++P           L  +DLS  +I  L    F+N   + +L L+ N
Sbjct: 32  DVTELYLDGNQFTLVPKEL---SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88

Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIA 537
            L      +F   D L  L  L L  N+++ +         A++ + +  NP  CDCN+ 
Sbjct: 89  RLRCIPPRTF---DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145

Query: 538 DMWEWATREKGDIG 551
            + +W   E  + G
Sbjct: 146 WLSDWVKSEYKEPG 159

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 26/126 (20%)

Query: 218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA 277
           LYL GN  +   +   L     L  + L N  +S L   +F   T L  L +S+N     
Sbjct: 36  LYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN----- 88

Query: 278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS 337
                               L+ I   TF  + SL+ L L GN +  +  G F +L+ LS
Sbjct: 89  -------------------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129

Query: 338 VLELNN 343
            L +  
Sbjct: 130 HLAIGA 135

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMT 310
             +P +         EL +  N        L S  + L  +D+  + +  +S  +F  MT
Sbjct: 27  KGIPRDV-------TELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMT 78

Query: 311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG 370
            L TLILS N+L  +    F  L  L +L L+   ++ + E  F++      L  L +  
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND---LSALSHLAIGA 135

Query: 371 NPLH 374
           NPL+
Sbjct: 136 NPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 30/138 (21%)

Query: 88  TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
             +  L L+    T + P    N  HL  ++LS N++ +                     
Sbjct: 31  RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRIST--------------------- 68

Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
                L +  F+N T L  L L+ N L  +   T     L  L  L L    +   + E 
Sbjct: 69  -----LSNQSFSNMTQLLTLILSYNRLRCIPPRTF--DGLKSLRLLSLHGNDISV-VPEG 120

Query: 208 AFVNATKLRTLYLSGNPL 225
           AF + + L  L +  NPL
Sbjct: 121 AFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
             L L  N+   +        N  HL  +DLSN  +   LS  +F N T+L TL LS N 
Sbjct: 34  TELYLDGNQFTLVPKEL---SNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNR 89

Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
           L           L  L  LSL    +S +P   F+  + L  L I  NPL
Sbjct: 90  LRCIPPRTFDG-LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 44  YLYMQECTLSKINPQ-FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY 102
            L + +  L +I+    F  L  L KL+L  N L  IEP  F+  + ++ L L    +  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 103 ISPSAFDNLNHLKTLELSQNKLKS 126
           IS   F  L+ LKTL L  N++  
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISC 116

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 4/134 (2%)

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
              EL L+ N L  + +  L   +L  L  L+L R ++  + PN F    +I  L L  N
Sbjct: 30  HTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIA 537
            +   S   F     L +L++L+L +N ++ + P    H  ++TS+ L  NP+ C+C++A
Sbjct: 89  KIKEISNKMF---LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145

Query: 538 DMWEWATREKGDIG 551
              EW  ++  + G
Sbjct: 146 WFAEWLRKKSLNGG 159

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 22  INLNANPIQ--PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII 79
           + LN N +     +G F     L+ L ++   L+ I P  F   + + +L L  N ++ I
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93

Query: 80  EPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
              +F  L  L+ L L    ++ + P +F++LN L +L L+ N
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 24/128 (18%)

Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
             L L+ N L           L  L +L L+   L+ +  N F   + +QEL +  N   
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN--- 88

Query: 276 DAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTH 335
                                 ++ IS   FL +  LKTL L  N++  +  G F++L  
Sbjct: 89  ---------------------KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 336 LSVLELNN 343
           L+ L L +
Sbjct: 128 LTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 30/139 (21%)

Query: 88  TSLEYLMLNRCNLTYISPSA-FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLR 146
                L+LN   L  IS    F  L HL  LEL +N+L                      
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-------------------- 68

Query: 147 QSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSE 206
                 +  N F   + ++ L L EN++ ++     LG  L  L +L+L +  +   +  
Sbjct: 69  ------IEPNAFEGASHIQELQLGENKIKEISNKMFLG--LHQLKTLNLYDNQISC-VMP 119

Query: 207 DAFVNATKLRTLYLSGNPL 225
            +F +   L +L L+ NP 
Sbjct: 120 GSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 251 SRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLESLEHLDMGYSNLQRISRSTFLKM 309
             +P +T        EL ++ N L   +   L   L  L  L++  + L  I  + F   
Sbjct: 25  RDIPLHT-------TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
           + ++ L L  NK++ + + +F  L  L  L L +  ++ +    F        L  L L+
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLTSLNLA 134

Query: 370 GNPL 373
            NP 
Sbjct: 135 SNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
             L L +NEL  +  +  L   L HL  L+L    L G +  +AF  A+ ++ L L  N 
Sbjct: 32  TELLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENK 89

Query: 225 LSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL 274
           +      + L  L +L  L+L +  +S +   +F     L  L+++ NP 
Sbjct: 90  IKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 310 TSLKTLILSGNKLETLES-GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRL 368
                L+L+ N+L  + S GLF  L HL  LEL    LT +    F E  +   ++EL+L
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGAS--HIQELQL 85

Query: 369 SGNPLHVLPD 378
             N +  + +
Sbjct: 86  GENKIKEISN 95

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 76.1 bits (188), Expect = 3e-16
 Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
            L ++   L  +    F  LT L KL LS N ++ +  GVFD LT L  L L+   L  +
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDL 145
               FD L  LK L L  N+LKS  D   +   L  L  + L
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDG--IFDRLTSLQKIWL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 72.7 bits (179), Expect = 5e-15
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
           ++  +L+L  N L+ +  GVFD LT L  L L++  +  +    FD L  L  L L +NK
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 124 LKSHIDWTL---VLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
           L+S     L   V   L +L  L L  + + ++PD +F   T L+ + L  N
Sbjct: 88  LQS-----LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 66.1 bits (162), Expect = 9e-13
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 23  NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
            L +N +Q +  G F     L  L + +  +  +    F  LT L  L L  N L+ +  
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93

Query: 82  GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQN 122
           GVFD LT L+ L L+   L  +    FD L  L+ + L  N
Sbjct: 94  GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
               L L  N L  LP G  +  +L++L  L LS+ +I  LP  VF+    +T L L  N
Sbjct: 29  SATRLELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86

Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
            L       F   D L +L+ L L  N L  +   +     ++  I L  NPW C C 
Sbjct: 87  KLQSLPNGVF---DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
             L++  + LQ +    F K+T L  L LS N++++L  G+F  LT L++L L+   L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 349 LNETVFHENYTYPDLEELRLSGNPLHVLPD 378
           L   VF +  T   L+EL L  N L  +PD
Sbjct: 91  LPNGVF-DKLT--QLKELALDTNQLKSVPD 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 27/131 (20%)

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
           RL L +  L  LP   F + T L +L +S N                         +Q +
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQN------------------------QIQSL 67

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
               F K+T L  L L  NKL++L +G+F  LT L  L L+   L  + + +F       
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD---RLT 124

Query: 362 DLEELRLSGNP 372
            L+++ L  NP
Sbjct: 125 SLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
           +S   L L  NKL++L  G+F  LT L+ L L+   +  L + VF +      L  L L 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK---LTKLTILYLH 84

Query: 370 GNPLHVLPD 378
            N L  LP+
Sbjct: 85  ENKLQSLPN 93

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 25/117 (21%)

Query: 204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
           L    F   T+L  L LS N + +    V  K LTKL  L L    L  LP   F + T 
Sbjct: 43  LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-LTKLTILYLHENKLQSLPNGVFDKLTQ 101

Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
           L+EL +  N                         L+ +    F ++TSL+ + L  N
Sbjct: 102 LKELALDTN------------------------QLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 141 DTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL 200
             L+L  + + +LP  VF   T L  L+L++N++  L             D L       
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--------FDKL------- 75

Query: 201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHR 260
                       TKL  LYL  N L +    V  K LT+L  L+L    L  +P   F R
Sbjct: 76  ------------TKLTILYLHENKLQSLPNGVFDK-LTQLKELALDTNQLKSVPDGIFDR 122

Query: 261 FTCLQELDISHNP 273
            T LQ++ +  NP
Sbjct: 123 LTSLQKIWLHTNP 135

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 75.2 bits (184), Expect = 9e-15
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 262 TCLQ--ELDISHNPLIDAFTALLSPLESLEHLDMGYSN-LQRISRSTFLKMTSLKTLILS 318
                  L  + +  +D+   L    E+L  L +     LQ +       +  L+ L + 
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH 374
            + L  +    F     LS L L+   L  L+            L+EL LSGNPLH
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ----GLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 74.8 bits (183), Expect = 1e-14
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 31/135 (22%)

Query: 417 PDLEELRLSGNP-LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA 475
            +L EL +     L  L   +L    L  LR+L + +  + ++ P+ F+ T  ++ LNL+
Sbjct: 31  ENLTELYIENQQHLQHLELRDL--RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
            N L   S  + Q L              +L                + L GNP  C C 
Sbjct: 89  FNALESLSWKTVQGL--------------SLQE--------------LVLSGNPLHCSCA 120

Query: 536 IADMWEWATREKGDI 550
           +  +  W     G +
Sbjct: 121 LRWLQRWEEEGLGGV 135

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 73.2 bits (179), Expect = 4e-14
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 35  AFLVARSLLYLYMQEC-TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL 93
               A +L  LY++    L  +  +    L  L  L +  + LR + P  F     L  L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 94  MLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
            L+   L  +S      L+ L+ L LS N L
Sbjct: 86  NLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.5 bits (177), Expect = 7e-14
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 56  NPQFFTNLTTLNKLDLSGNP-LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL 114
           +         L +L +     L+ +E      L  L  L + +  L +++P AF     L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 115 KTLELSQNKLKS 126
             L LS N L+S
Sbjct: 83  SRLNLSFNALES 94

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.6 bits (154), Expect = 5e-11
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 304 STFLKMTSLKTLILSGNK-LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
                  +L  L +   + L+ LE    + L  L  L +   GL  +    FH     P 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT---PR 81

Query: 363 LEELRLSGNPLHVLPDST 380
           L  L LS N L  L   T
Sbjct: 82  LSRLNLSFNALESLSWKT 99

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 3e-10
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW 163
           S        +L  L +   +   H++    L  LG+L  L + +SG+  +  + F     
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKG-PLSED 207
           L  LNL+ N L       +L      +  L L    L G PL   
Sbjct: 82  LSRLNLSFNAL------ESLSWKT--VQGLSLQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.9 bits (147), Expect = 4e-10
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 26/127 (20%)

Query: 197 NCHLKGPLSE-DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
            C   G L        A  L  LY+             L+ L +L  L++   GL  +  
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 256 NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL 315
           + FH                            L  L++ ++ L+ +S  T  +  SL+ L
Sbjct: 74  DAFHF------------------------TPRLSRLNLSFNALESLSWKTV-QGLSLQEL 108

Query: 316 ILSGNKL 322
           +LSGN L
Sbjct: 109 VLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 19  LITINLNANP-IQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPL 76
           L  + +     +Q +E         L  L + +  L  + P  F     L++L+LS N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 77  RIIEPGVFDPLTSLEYLMLNR------CNLTYISPSAFDNLNHL 114
             +       L SL+ L+L+       C L ++     + L  +
Sbjct: 93  ESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGV 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 48/262 (18%), Positives = 77/262 (29%), Gaps = 51/262 (19%)

Query: 159 ANNTWLRNLNLAENELIDLDVATTLGQNLVH---LDSLDLSNCHLKGPLSE--------- 206
             +  ++ + L+ N  I  + A  L +N+     L+  + S+        E         
Sbjct: 29  LEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 207 DAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNCGLS------------ 251
            A +   KL T+ LS N         L   L   T L  L L N GL             
Sbjct: 88  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 252 -RLPANTFHRFTCLQELDISHNPLID----AFTALLSPLESLEHLDMGYSNL-----QRI 301
                        L+ +    N L +     +         L  + M  + +     + +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 302 SRSTFLKMTSLKTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLTRLNETVFH- 355
                     LK L L  N         L   L ++  +L  L LN+C L+         
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-KSWPNLRELGLNDCLLS--ARGAAAV 264

Query: 356 ----ENYTYPDLEELRLSGNPL 373
                      L+ LRL  N +
Sbjct: 265 VDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 62/371 (16%), Positives = 114/371 (30%), Gaps = 94/371 (25%)

Query: 15  DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGN 74
           ++  +  I L+ N I   E A  ++ ++                   +   L   + S  
Sbjct: 30  EDDSVKEIVLSGNTIGT-EAARWLSENIA------------------SKKDLEIAEFSDI 70

Query: 75  PLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV- 133
               ++  + + L  L                A      L T+ LS N         L+ 
Sbjct: 71  FTGRVKDEIPEALRLL--------------LQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 134 -LGNLGKLDTLDLRQSGIS-------------NLPDNVFANNTWLRNLNLAENELID--- 176
            L     L+ L L  +G+                 +    N   LR++    N L +   
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 177 LDVATTLGQNLVHLDSLDLSNCHLK----GPLSEDAFVNATKLRTLYLSGNPLS---AAD 229
            + A T   +   L ++ +    ++      L  +      +L+ L L  N  +   ++ 
Sbjct: 177 KEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 230 LSVALKPLTKLHRLSLRNCGLSR------LPANTFHRFTCLQELDISHNPLIDAFTALLS 283
           L++ALK    L  L L +C LS       + A +      LQ L + +N +       L 
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESG--------LFQNLTH 335
               ++                  KM  L  L L+GN+    E          +F     
Sbjct: 296 --TVIDE-----------------KMPDLLFLELNGNRFS--EEDDVVDEIREVFSTRGR 334

Query: 336 LSVLELNNCGL 346
             + EL++   
Sbjct: 335 GELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 50/371 (13%), Positives = 98/371 (26%), Gaps = 90/371 (24%)

Query: 190 LDSLDLSNCHLKG----PLSEDAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHR 242
           ++   L    +       +     +    ++ + LSGN +    A  LS  +     L  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 243 LSLRNCGLSRLP----------ANTFHRFTCLQELDISHNPL----IDAFTALLSPLESL 288
               +    R+                +   L  + +S N       +     LS    L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 289 EHLDMGYSNL-------------QRISRSTFLKMTSLKTLILSGNKLE-----TLESGLF 330
           EHL +  + L             +            L+++I   N+LE            
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 331 QNLTHLSVLELNNCGLT-----RLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSM 385
            +   L  +++   G+       L            +L+ L L  N              
Sbjct: 185 SH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYC---QELKVLDLQDNTFTH-------LGS 233

Query: 386 RTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTG------NLLP 439
             +   +                        P+L EL L+   L     G          
Sbjct: 234 SALAIALKSW---------------------PNLRELGLNDCLLS--ARGAAAVVDAFSK 270

Query: 440 PQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLL 494
            +   L++L L   +I+      L   +     ++  L L  N  S   ++  +  +V  
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330

Query: 495 ELESLDLSNNN 505
                +L   +
Sbjct: 331 TRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 56/358 (15%), Positives = 100/358 (27%), Gaps = 94/358 (26%)

Query: 215 LRTLYLSGNPLSAAD---LSVALKPLTKLHRLSLRNCGLS----RLPANTFHRFTCLQEL 267
           +    L  + ++  D   +   L     +  + L    +     R  +        L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 268 DISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL----- 322
           + S                     D     L+ + ++  LK   L T+ LS N       
Sbjct: 66  EFSDIFTGRV-------------KDEIPEALRLLLQA-LLKCPKLHTVRLSDNAFGPTAQ 111

Query: 323 ETLESGLFQNLTHLSVLELNNCGLTR----------LNETVFHENYTYPDLEELRLSGNP 372
           E L   L ++ T L  L L+N GL                V  +    P L  +    N 
Sbjct: 112 EPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
           L     S K                     F  +            L  +++  N +   
Sbjct: 171 LE--NGSMK----------------EWAKTFQSHRL----------LHTVKMVQNGIRPE 202

Query: 433 PTGNLLPPQLSR---LRSLDLSRCKI---------DYLPPNVFNNTRNITSLNLANNNLS 480
              +LL   L+    L+ LDL                L         N+  L L +  L 
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-----PNLRELGLNDCLL- 256

Query: 481 MTSELSFQFLDVLLE-----LESLDLSNNNLT-----HISPTVLRHNRAITSIKLVGN 528
            ++  +   +D   +     L++L L  N +       +   +      +  ++L GN
Sbjct: 257 -SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 48/277 (17%), Positives = 79/277 (28%), Gaps = 60/277 (21%)

Query: 14  LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSG 73
           L  P L T+ L+ N   P      +   L                  +  T L  L L  
Sbjct: 91  LKCPKLHTVRLSDNAFGP-TAQEPLIDFL------------------SKHTPLEHLYLHN 131

Query: 74  NPL-------------RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHLK 115
           N L              +           L  ++  R  L        +   F +   L 
Sbjct: 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA-KTFQSHRLLH 190

Query: 116 TLELSQNKLKSH-IDWTL--VLGNLGKLDTLDLRQSGISN-----LPDNVFANNTWLRNL 167
           T+++ QN ++   I+  L   L    +L  LDL+ +  ++     L      +   LR L
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLREL 249

Query: 168 NLAENELID---LDVATTLGQNL-VHLDSLDLSNCHLKGP----LSEDAFVNATKLRTLY 219
            L +  L       V     +   + L +L L    ++      L          L  L 
Sbjct: 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309

Query: 220 LSGNPLSAAD-----LSVALKPLTKLHRLSLRNCGLS 251
           L+GN  S  D     +        +     L +    
Sbjct: 310 LNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 50/316 (15%), Positives = 92/316 (29%), Gaps = 37/316 (11%)

Query: 85  DPLTSLEYLMLNRCNLTYISPSAFDNLN-HLKTLELSQNKLKSHIDWTLV----LGNLGK 139
             L   E L     +  + +      +   L+ L L+  ++ + +  T+V          
Sbjct: 44  QVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHA 102

Query: 140 LDTLDLRQSGISNLPDNVFA---NNTWLRNLNLAENELIDLDV---ATTLGQNLVHLDSL 193
           LD ++L    +   P  +          R L L  N L           L  +   + +L
Sbjct: 103 LDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160

Query: 194 DLSNCHLKGP----LSEDAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLR 246
            LSN  L       L E      T +  L L    L       L+  L    +L  L++ 
Sbjct: 161 RLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219

Query: 247 NCGLSRLPANTFHRF----TCLQELDISHNPLID----AFTALLSPLESLEHLDMGYSNL 298
             G     A    R       L+ L +  N L          L    E    + +  +  
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279

Query: 299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY 358
             +S    + ++ ++        L + +    Q    L + +L +     LN     +  
Sbjct: 280 TAVSEYWSVILSEVQR------NLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLL 333

Query: 359 TY-PDLEELRLSGNPL 373
               ++  L       
Sbjct: 334 RVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 51/259 (19%), Positives = 80/259 (30%), Gaps = 48/259 (18%)

Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
           + NL  L+     +  +  L   V   +  L +      E  +   +    + L  L  L
Sbjct: 22  IKNLDALENAQAIKKKLGKLGRQVLPPSELL-DHLFFHYEFQNQRFSA---EVLSSLRQL 77

Query: 194 DLSNCHLKGP-----LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
           +L+   +  P     ++         L  + L+   L  A L   L    +  +L L+  
Sbjct: 78  NLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 249 GLSRLPANTF-----HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR 303
            L             H    +  L +S+NPL  A  A+L   E L               
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM--EGLAG------------- 181

Query: 304 STFLKMTSLKTLILSGNKL-----ETLESGLFQNLTHLSVLELNNCGLT----RLNETVF 354
                 TS+  L L    L     E L + L +N   L  L +   G             
Sbjct: 182 -----NTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARAA 235

Query: 355 HENYTYPDLEELRLSGNPL 373
            E+ +   LE L L  N L
Sbjct: 236 REHPS---LELLHLYFNEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 37/285 (12%), Positives = 67/285 (23%), Gaps = 54/285 (18%)

Query: 16  NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFF-----------TNLT 64
              L  +NL    + P     +VA  L         L ++N                   
Sbjct: 71  LSSLRQLNLAGVRMTP-VKCTVVAAVLG---SGRHALDEVNLASCQLDPAGLRTLLPVFL 126

Query: 65  TLNKLDLSGNPL-----RIIEPGVFDPLTSLEYLMLNRCNLT-----YISPSAFDNLNHL 114
              KL L  N L     + +   +      +  L L+   LT      +          +
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM-EGLAGNTSV 185

Query: 115 KTLELSQNKLKSHIDWTL--VLGNLGKLDTLDLRQSGISNLP----DNVFANNTWLRNLN 168
             L L    L       L   L    +L  L++  +G  +            +  L  L+
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245

Query: 169 LAENELID-----LDVATTLGQNLVHLDSLDLSNCH------------LKGP--LSEDAF 209
           L  NEL       L       +    +                      +          
Sbjct: 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARV 305

Query: 210 VNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNCGLS 251
               +L    L  +  +       +  L+   ++  L  +     
Sbjct: 306 QRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 19/125 (15%)

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITSL 472
            L+E+ L+   L       LLP    R R L L    +       L   + ++   IT+L
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160

Query: 473 NLANNNLSMTSELSFQFL-DVLLE---LESLDLSNNNLT-----HISPTVLRHNRAITSI 523
            L+NN L+         L + L     +  L L +  L       ++   L  NR +  +
Sbjct: 161 RLSNNPLT---AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQEL 216

Query: 524 KLVGN 528
            +  N
Sbjct: 217 NVAYN 221

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 419 LEELRLSGNPL---HVLPTGNLLPPQLSRLRSLDLSRCKIDY------LPPNVFNNTRNI 469
           L +L L+G  +          +L      L  ++L+ C++D       LP          
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-----LRA 128

Query: 470 TSLNLANNNLSMTS--ELSFQFLDVLLELESLDLSNNNLT-----HISPTVLRHNRAITS 522
             L L  N+L   +  +L    L    ++ +L LSNN LT      +    L  N ++T 
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTH 187

Query: 523 IKLVGN 528
           + L+  
Sbjct: 188 LSLLHT 193

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.9 bits (178), Expect = 1e-13
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 22/213 (10%)

Query: 19  LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRI 78
           L    L+      ++      + L  L        +      T +  +  LD        
Sbjct: 351 LFRCELSVEKSTVLQSELESCKELQELE------PENKWCLLTIILLMRALDPLLYEKET 404

Query: 79  IEPGVFDPLTSLEYLML-----NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLV 133
           ++   F  L +++ +        R      +         ++ L L+   L         
Sbjct: 405 LQY--FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH---- 458

Query: 134 LGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSL 193
           L  L  +  LDL  + +  LP    A    L  L  ++N L ++D    +  NL  L  L
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD---GVA-NLPRLQEL 513

Query: 194 DLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
            L N  L+   +    V+  +L  L L GN L 
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 6e-12
 Identities = 48/301 (15%), Positives = 86/301 (28%), Gaps = 42/301 (13%)

Query: 42  LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
           L    + +          +T   +  +  L                  L    L+    +
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLL-KDRPECWCRDSATDEQLFRCELS-VEKS 361

Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN 161
            +  S  ++   L+ LE         I     +  +  LD L   +  +     +     
Sbjct: 362 TVLQSELESCKELQELEPENKWCLLTI-----ILLMRALDPLLYEKETLQYF--STLKAV 414

Query: 162 TWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS 221
             +R   L +     L   + L      +  L L++  L      +  +    +  L LS
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL---VTHLDLS 471

Query: 222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL 281
            N L    L  AL  L  L  L   +  L  +          LQEL + +N         
Sbjct: 472 HNRLR--ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN--------R 519

Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN---KLETLESGLFQNLTHLSV 338
           L    +++ L                    L  L L GN   + E ++  L + L  +S 
Sbjct: 520 LQQSAAIQPLV---------------SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

Query: 339 L 339
           +
Sbjct: 565 I 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 1e-11
 Identities = 49/317 (15%), Positives = 94/317 (29%), Gaps = 33/317 (10%)

Query: 86  PLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNL-------G 138
            +    ++      L+          + + TL L  ++    ++W    G          
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 139 KLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLD------- 191
            L    L      +    ++  +   +   L ++        +   + L   +       
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST 362

Query: 192 ---SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
              S   S   L+    E+ +   T +  +      L   +       L  +  +     
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422

Query: 249 GLSRLPAN-----TFHRFTCLQELDISHNPLIDAFTAL--LSPLESLEHLDMGYSNLQRI 301
              R             +  ++ L ++H  L    T L  L  L  + HLD+ ++ L+ +
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDL----TVLCHLEQLLLVTHLDLSHNRLRAL 478

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
                  +  L+ L  S N LE ++     NL  L  L L N  L +          + P
Sbjct: 479 P-PALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAA--IQPLVSCP 533

Query: 362 DLEELRLSGNPLHVLPD 378
            L  L L GN L     
Sbjct: 534 RLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 7e-11
 Identities = 46/269 (17%), Positives = 79/269 (29%), Gaps = 22/269 (8%)

Query: 254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK----M 309
             +  +R + +   D+    L D        +            L +     + +     
Sbjct: 289 TPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATD 348

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
             L    LS  K   L+S   ++   L  LE  N     L   +          E+  L 
Sbjct: 349 EQLFRCELSVEKSTVLQS-ELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQ 406

Query: 370 G-------NPLHVLPDSTKQYS--MRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE 420
                   +P+        +    +     ++      ++ L   + TV         + 
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVT 466

Query: 421 ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS 480
            L LS N L  LP        L  L  L  S   ++ +      N   +  L L NN L 
Sbjct: 467 HLDLSHNRLRALPPALA---ALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ 521

Query: 481 MTSELSFQFLDVLLELESLDLSNNNLTHI 509
            ++ +  Q L     L  L+L  N+L   
Sbjct: 522 QSAAI--QPLVSCPRLVLLNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 37/244 (15%), Positives = 74/244 (30%), Gaps = 35/244 (14%)

Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
           L   ++S         + L   + L+ L+                +  L     +     
Sbjct: 351 LFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQY 383
           TL++       +L  L         + +        Y D+  L L+   L VL       
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLK------MEYADVRVLHLAHKDLTVLC------ 457

Query: 384 SMRTIPTQIWKNFDFLVILFILN------ETVFHENYTYPDLEELRLSGNPLHVLPTGNL 437
                      + + L+++  L+        +         LE L+ S N L  +    +
Sbjct: 458 -----------HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GV 504

Query: 438 LPPQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLEL 496
               L RL+ L L   ++          +   +  LNL  N+L     +  +  ++L  +
Sbjct: 505 --ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

Query: 497 ESLD 500
            S+ 
Sbjct: 563 SSIL 566

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 66.1 bits (162), Expect = 7e-13
 Identities = 27/63 (42%), Positives = 35/63 (55%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
           T   +L L+ N +  +EPGVFD L +L+ L  N   LT I    FD L  L  L+L+ N 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 124 LKS 126
           LKS
Sbjct: 93  LKS 95

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 30/79 (37%), Positives = 40/79 (50%)

Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
            L++    ++K+ P  F +L  L +L  + N L  I  GVFD LT L  L LN  +L  I
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96

Query: 104 SPSAFDNLNHLKTLELSQN 122
              AFDNL  L  + L  N
Sbjct: 97  PRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 446 RSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNN 505
           + L L+  +I  L P VF++  N+  L   +N L+      F   D L +L  LDL++N+
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF---DKLTQLTQLDLNDNH 92

Query: 506 LTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
           L  I      + +++T I L  NPW C+C 
Sbjct: 93  LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
             + L +  + + ++    F  + +L+ L  + NKL  + +G+F  LT L+ L+LN+  L
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

Query: 347 TRLNETVFHENYTYPDLEELRLSGNP 372
             +    F +N     L  + L  NP
Sbjct: 94  KSIPRGAF-DNLK--SLTHIYLYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 23  NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
            LN N I  +E G F    +L  LY     L+ I    F  LT L +LDL+ N L+ I  
Sbjct: 39  WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98

Query: 82  GVFDPLTSLEYLML 95
           G FD L SL ++ L
Sbjct: 99  GAFDNLKSLTHIYL 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
           T  + L L+ N++  LE G+F +L +L  L  N+  LT +   VF +  T   L +L L+
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF-DKLT--QLTQLDLN 89

Query: 370 GNPLHVLPD 378
            N L  +P 
Sbjct: 90  DNHLKSIPR 98

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 53/137 (38%)

Query: 88  TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
           T  + L LN   +T + P  FD+L +L+ L  + NKL +                     
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--------------------- 71

Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
                +P  VF   T L  L+L +N L          +++                    
Sbjct: 72  -----IPTGVFDKLTQLTQLDLNDNHL----------KSIPR-----------------G 99

Query: 208 AFVNATKLRTLYLSGNP 224
           AF N   L  +YL  NP
Sbjct: 100 AFDNLKSLTHIYLYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 24/106 (22%)

Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
           T   RL L N  +++L    F     LQ+L  + N                         
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN------------------------K 68

Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
           L  I    F K+T L  L L+ N L+++  G F NL  L+ + L N
Sbjct: 69  LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 66.1 bits (162), Expect = 8e-13
 Identities = 28/63 (44%), Positives = 34/63 (53%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNK 123
           TT   L L  N +  +EPGVFD LT L  L L+   LT +    FD L  L  L L+ N+
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 124 LKS 126
           LKS
Sbjct: 90  LKS 92

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 33/79 (41%), Positives = 42/79 (53%)

Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
            LY+ +  ++K+ P  F  LT L +LDL  N L ++  GVFD LT L  L LN   L  I
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93

Query: 104 SPSAFDNLNHLKTLELSQN 122
              AFDNL  L  + L  N
Sbjct: 94  PRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)

Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
             +  SG  L  +PTG  +P   +  + L L   +I  L P VF+    +T L+L NN L
Sbjct: 12  TTVDCSGKSLASVPTG--IP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66

Query: 480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN 535
           ++     F   D L +L  L L++N L  I      + +++T I L+ NPW C C+
Sbjct: 67  TVLPAGVF---DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGL 346
           + + L +  + + ++    F ++T L  L L  N+L  L +G+F  LT L+ L LN+  L
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

Query: 347 TRLNETVFHENYTYPDLEELRLSGNP 372
             +    F +N     L  + L  NP
Sbjct: 91  KSIPRGAF-DNLK--SLTHIWLLNNP 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 23  NLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEP 81
            L  N I  +E G F     L  L +    L+ +    F  LT L +L L+ N L+ I  
Sbjct: 36  YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95

Query: 82  GVFDPLTSLEYLML 95
           G FD L SL ++ L
Sbjct: 96  GAFDNLKSLTHIWL 109

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
           T+ + L L  N++  LE G+F  LT L+ L+L+N  LT L   VF +  T   L +L L+
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF-DKLT--QLTQLSLN 86

Query: 370 GNPLHVLPD 378
            N L  +P 
Sbjct: 87  DNQLKSIPR 95

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 30/137 (21%), Positives = 44/137 (32%), Gaps = 53/137 (38%)

Query: 88  TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ 147
           T+ + L L    +T + P  FD L  L  L+L  N+L                       
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--------------------- 68

Query: 148 SGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED 207
                LP  VF   T L  L+L +N+L          +++                    
Sbjct: 69  -----LPAGVFDKLTQLTQLSLNDNQL----------KSIPR-----------------G 96

Query: 208 AFVNATKLRTLYLSGNP 224
           AF N   L  ++L  NP
Sbjct: 97  AFDNLKSLTHIWLLNNP 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 24/106 (22%)

Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
           T    L L +  +++L    F R T L  LD+ +N                         
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN------------------------Q 65

Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
           L  +    F K+T L  L L+ N+L+++  G F NL  L+ + L N
Sbjct: 66  LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 66  LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS--PSAFDNLNHLKTLELSQNK 123
           + K     + +RI E       T  E + L+   +  I    +    L   K L LS N 
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNN 59

Query: 124 LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
           ++  I     L  +  L  L L ++ I  + +N+ A    L  L ++ N++  L      
Sbjct: 60  IEK-IS---SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSGI--- 111

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKP 236
            + LV+L  L +SN  +      D      KL  L L+GNPL           
Sbjct: 112 -EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 9/146 (6%)

Query: 42  LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
            + L+     + K++    + L     L LS N +  I       + +L  L L R  + 
Sbjct: 27  KVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIK 83

Query: 102 YISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFAN 160
            I        + L+ L +S N++ S +     +  L  L  L +  + I+N  + +  A 
Sbjct: 84  KIENL-DAVADTLEELWISYNQIAS-LS---GIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 161 NTWLRNLNLAENELIDLDVATTLGQN 186
              L +L LA N L +          
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 11/116 (9%)

Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
           T    + L LS N +  +   +L    +  LR L L R  I  +  N+      +  L +
Sbjct: 46  TLKACKHLALSTNNIEKI--SSL--SGMENLRILSLGRNLIKKIE-NLDAVADTLEELWI 100

Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP-TVLRHNRAITSIKLVGNP 529
           + N ++     S   ++ L+ L  L +SNN +T+      L     +  + L GNP
Sbjct: 101 SYNQIA-----SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 13  NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLS 72
                  + ++    PI+ ++      ++  +L +    + KI+    + +  L  L L 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLG 78

Query: 73  GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTL 132
            N ++ IE  +     +LE L ++   +  +S    + L +L+ L +S NK+ +      
Sbjct: 79  RNLIKKIE-NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITN-WGEID 134

Query: 133 VLGNLGKLDTLDL 145
            L  L KL+ L L
Sbjct: 135 KLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 34/188 (18%)

Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS 196
           + K  T+             V      +  L+     +  +D        L     L LS
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVE-LHGMIPPIEKMD---ATLSTLKACKHLALS 56

Query: 197 NCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN 256
             +++      +      LR L L  N +    +         L  L +    ++ L   
Sbjct: 57  TNNIE---KISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSG- 110

Query: 257 TFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI 316
              +   L+ L +S+N + +           ++ L                 +  L+ L+
Sbjct: 111 -IEKLVNLRVLYMSNNKITN--------WGEIDKLA---------------ALDKLEDLL 146

Query: 317 LSGNKLET 324
           L+GN L  
Sbjct: 147 LAGNPLYN 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 35/181 (19%)

Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
            +  E +E L      ++++  +T   + + K L LS N +E +   L   + +L +L L
Sbjct: 22  ATEAEKVE-LHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSL 77

Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
               + ++     + +     LEEL +S N +  L                 +    L +
Sbjct: 78  GRNLIKKIE----NLDAVADTLEELWISYNQIASLSG--------------IEKLVNLRV 119

Query: 402 L-----FILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQ--------LSRLRSL 448
           L      I N     +      LE+L L+GNPL+     N    +        L  L+ L
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

Query: 449 D 449
           D
Sbjct: 180 D 180

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
            +ELD+     I     L + L+  + +D   + ++++    F  +  LKTL+++ N++ 
Sbjct: 21  DRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRIC 77

Query: 324 TLESGLFQNLTHLSVLELNNCGLTRLNE-TVFHENYTYPDLEELRLSGNPLHVLPD 378
            +  GL Q L  L+ L L N  L  L +            L  L +  NP+     
Sbjct: 78  RIGEGLDQALPDLTELILTNNSLVELGDLDPLASL---KSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 108 FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL 167
           + N    + L+L   K+   I+   +   L + D +D   + I  L    F     L+ L
Sbjct: 15  YTNAVRDRELDLRGYKIPV-IEN--LGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTL 69

Query: 168 NLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
            +  N +  +     L Q L  L  L L+N  L      D   +   L  L +  NP++
Sbjct: 70  LVNNNRICRIG--EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 60  FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
           +TN     +LDL G  + +IE  +   L   + +  +   +  +    F  L  LKTL +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 71

Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLD 178
           + N++    +   +   L  L  L L  + +  L D +  A+   L  L +  N + +  
Sbjct: 72  NNNRICRIGEG--LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 5/133 (3%)

Query: 23  NLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPG 82
            L A  I+     +  A     L ++   +  I       L   + +D S N +R ++  
Sbjct: 3   KLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG- 59

Query: 83  VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDT 142
            F  L  L+ L++N   +  I       L  L  L L+ N L   +     L +L  L  
Sbjct: 60  -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTY 117

Query: 143 LDLRQSGISNLPD 155
           L + ++ ++N   
Sbjct: 118 LCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 5/142 (3%)

Query: 9   NDRRNLDNP-GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLN 67
                  N      ++L    I  +E           +   +  + K+    F  L  L 
Sbjct: 10  EQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLK 67

Query: 68  KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISP-SAFDNLNHLKTLELSQNKLKS 126
            L ++ N +  I  G+   L  L  L+L   +L  +       +L  L  L + +N + +
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127

Query: 127 HID-WTLVLGNLGKLDTLDLRQ 147
                  V+  + ++  LD ++
Sbjct: 128 KKHYRLYVIYKVPQVRVLDFQK 149

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
           T    + +  S N +  L       P L RL++L ++  +I  +   +     ++T L L
Sbjct: 40  TLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
            NN+L    +L    L  L  L  L +  N +T+  
Sbjct: 96  TNNSLVELGDLD--PLASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 441 QLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLD 500
              R R LDL   KI  +  N+        +++ ++N +            +L  L++L 
Sbjct: 17  NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIR-----KLDGFPLLRRLKTLL 70

Query: 501 LSNNNLTHISPTVLRHNRAITSIKLVGN 528
           ++NN +  I   + +    +T + L  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNN 98

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 63.7 bits (155), Expect = 5e-11
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 10/195 (5%)

Query: 187 LVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR 246
           L+    +                 +  +++ + LS + +  + L   L   +KL  LSL 
Sbjct: 67  LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126

Query: 247 NCGLSRLPANTFHRFTCLQELDISHNPLI--DAFTALLSPLESLEHLDMGYSNL---QRI 301
              LS    NT  + + L  L++S        A   LLS    L+ L++ +      + +
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186

Query: 302 SRSTFLKMTSLKTLILSGNKLETLESG---LFQNLTHLSVLELNNCGLTRLNETVFHENY 358
             +      ++  L LSG +    +S    L +   +L  L+L++     L    F E +
Sbjct: 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS--VMLKNDCFQEFF 244

Query: 359 TYPDLEELRLSGNPL 373
               L+ L LS    
Sbjct: 245 QLNYLQHLSLSRCYD 259

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 45/204 (22%), Positives = 74/204 (36%), Gaps = 7/204 (3%)

Query: 97  RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW-TLVLGNLGKLDTLDLRQSGISNLPD 155
           RC  +++     ++ +  +   +  +     +     +L    KL  L L    +S+   
Sbjct: 76  RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135

Query: 156 NVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFV--NAT 213
           N  A N+ L  LNL+           TL  +   LD L+LS C           V   + 
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195

Query: 214 KLRTLYLSG--NPLSAADLSVALKPLTKLHRLSLRNC-GLSRLPANTFHRFTCLQELDIS 270
            +  L LSG    L  +DLS  ++    L  L L +   L       F +   LQ L +S
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

Query: 271 HNPLI-DAFTALLSPLESLEHLDM 293
               I       L  + +L+ L +
Sbjct: 256 RCYDIIPETLLELGEIPTLKTLQV 279

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 16/238 (6%)

Query: 21  TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
           T++L    + P     L+++ ++      C  S ++     + +      +  +   I  
Sbjct: 51  TLDLTGKNLHPDVTGRLLSQGVIAFR---CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 107

Query: 81  PG---VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNL 137
                +    + L+ L L    L+    +     ++L  L LS     S      +L + 
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167

Query: 138 GKLDTLDLRQSGISNLPDNVFA-----NNTWLRNLNLAE-NELIDLDVATTLGQNLVHLD 191
            +LD L+L  S   +  +          +  +  LNL+   + +     +TL +   +L 
Sbjct: 168 SRLDELNL--SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225

Query: 192 SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNC 248
            LDLS+  +        F     L+ L LS    +    L   L  +  L  L +   
Sbjct: 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 282

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 60/335 (17%), Positives = 109/335 (32%), Gaps = 45/335 (13%)

Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
            L   +L               + +  +TL L+G  L        L       R      
Sbjct: 23  CLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFM 82

Query: 249 GLSRLPANTFHRFTCLQELDISHNPLID-AFTALLSPLESLEHLDMGYSNLQRISRSTFL 307
                   +  R   +Q +D+S++ +       +LS    L++L +    L     +T  
Sbjct: 83  DQPLAEHFSPFR---VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139

Query: 308 KMTSLKTLILSGNKLETLES--GLFQNLTHLSVLELNNC-GLTRLNETVFHENYTYPDLE 364
           K ++L  L LSG    +  +   L  + + L  L L+ C   T  +  V   + +   + 
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS-ETIT 198

Query: 365 ELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRL 424
           +L LSG                                 +    +       P+L  L L
Sbjct: 199 QLNLSG-----------------------------YRKNLQKSDLSTLVRRCPNLVHLDL 229

Query: 425 SGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSE 484
           S +   +         QL+ L+ L LSRC    + P        I +L      L +   
Sbjct: 230 SDSV-MLKNDCFQEFFQLNYLQHLSLSRCYD--IIPETLLELGEIPTL----KTLQVFGI 282

Query: 485 LSFQFLDVLLE-LESLDLSNNNLTHISPTVLRHNR 518
           +    L +L E L  L ++ ++ T I+   + + +
Sbjct: 283 VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKK 317

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 62  NLTTLNKLDLSGNPLRIIE-PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120
               + +L L        +  G+     +LE+L L    L  +S      L  LK LELS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79

Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDLD 178
           +N++   +D  ++   L  L  L+L  + + ++           L++L+L   E+ +L+
Sbjct: 80  ENRIFGGLD--MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 43  LYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY 102
           L L   +    KI          L  L L    L  +       L  L+ L L+   +  
Sbjct: 29  LVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFG 85

Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD 155
                 + L +L  L LS NKLK  I     L  L  L +LDL    ++NL D
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 34/159 (21%), Positives = 51/159 (32%), Gaps = 29/159 (18%)

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
            +    +  L L NC       E        L  L L    L +      L  L KL +L
Sbjct: 20  NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS---NLPKLPKLKKL 76

Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR 303
            L    +         +   L  L++S N L D        + +LE L            
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--------ISTLEPLK----------- 117

Query: 304 STFLKMTSLKTLILSGNKLETLE---SGLFQNLTHLSVL 339
               K+  LK+L L   ++  L      +F+ L  L+ L
Sbjct: 118 ----KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
            LD   +        L +   +LE L +    L  +S     K+  LK L LS N++   
Sbjct: 30  VLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGG 86

Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNE-TVFHENYTYPDLEELRLSGNPLHVLPD 378
              L + L +L+ L L+   L  ++      +      L+ L L    +  L D
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL---ECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
            + +LE L L    L  +   NL  P+L +L+ L+LS  +I      +     N+T LNL
Sbjct: 47  EFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102

Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
           + N L   S L  + L  L  L+SLDL N  +T+++
Sbjct: 103 SGNKLKDISTL--EPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 5/117 (4%)

Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
               ++ L L   K        L       L+ L L   G+ ++ +        L+ L L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLEL 78

Query: 170 AENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
           +EN +        L + L +L  L+LS   LK   + +       L++L L    ++
Sbjct: 79  SENRIFGGL--DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 442 LSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLD 500
            + +R L L  CK +      +     N+  L+L N  L      S   L  L +L+ L+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKLE 77

Query: 501 LSNNNLTHISPTVLRHNRAITSIKLVGN 528
           LS N +      +      +T + L GN
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGN 105

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
              L L+ NNLT + P +L    A+ +  L  NPW+CDC +  +  W
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW 79

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 64  TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR------CNLTYIS 104
               +L L+GN L  + PG+ D L +L    L        C L  + 
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLR 77

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 19/81 (23%), Positives = 24/81 (29%), Gaps = 11/81 (13%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNN------CGLTRLNETVFHENYTYPDL 363
                L+L+GN L  L  GL   L  L    L        C L  L   +       P  
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYR 90

Query: 364 EE-----LRLSGNPLHVLPDS 379
           +        L G  L  L + 
Sbjct: 91  DLRCVAPPALRGRLLPYLAED 111

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 266 ELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL 325
            LD S +        L    E LE L      L  I+     K+  LK L LS N++   
Sbjct: 23  VLDNSRSNEG-KLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGG 79

Query: 326 ESGLFQNLTHLSVLELNNCGLTRLNE-TVFHENYTYPDLEELRLSGNPLHVLPD 378
              L +   +L+ L L+   +  L+      +     +L+ L L    +  L D
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL---ENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 5/117 (4%)

Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
             + +K L L  ++         +     +L+ L     G++++ +        L+ L L
Sbjct: 15  TPSDVKELVLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLEL 71

Query: 170 AENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
           ++N +        L +   +L  L+LS   +K   + +       L++L L    ++
Sbjct: 72  SDNRVSGGL--EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 43  LYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY 102
           L L        K+          L  L      L  I       L  L+ L L+   ++ 
Sbjct: 22  LVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDNRVSG 78

Query: 103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD 155
                 +   +L  L LS NK+K        L  L  L +LDL    ++NL D
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIE-PLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
            + +LE L      L  +   NL  P+L++L+ L+LS  ++      +     N+T LNL
Sbjct: 40  EFEELEFLSTINVGLTSI--ANL--PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95

Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS 510
           + N +   S +  + L  L  L+SLDL N  +T+++
Sbjct: 96  SGNKIKDLSTI--EPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
            +    +  L L N        E       +L  L      L+   ++  L  L KL +L
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIAN-LPKLNKLKKL 69

Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL--LSPLESLEHLDM 293
            L +  +S        +   L  L++S N  I   + +  L  LE+L+ LD+
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDL 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 4/136 (2%)

Query: 11  RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLD 70
            R   +   + ++ + +    +EG       L +L      L+ I       L  L KL+
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLE 70

Query: 71  LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS-PSAFDNLNHLKTLELSQNKLKSHID 129
           LS N +      + +   +L +L L+   +  +S       L +LK+L+L   ++ +  D
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 130 -WTLVLGNLGKLDTLD 144
               V   L +L  LD
Sbjct: 131 YRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 442 LSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLD 500
            S ++ L L   + +      + +    +  L+  N  L+     S   L  L +L+ L+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLE 70

Query: 501 LSNNNLTHISPTVLRHNRAITSIKLVGN 528
           LS+N ++     +      +T + L GN
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.9 bits (123), Expect = 3e-07
 Identities = 31/198 (15%), Positives = 66/198 (33%), Gaps = 26/198 (13%)

Query: 59  FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE 118
            F       + ++S      + P V D +  L  L +   N   I      NL   K+LE
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNLSIGKKPRPNL---KSLE 199

Query: 119 LSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD 178
           +    L   +   ++  +L  L+ L L                 ++   +   +  +++ 
Sbjct: 200 IISGGLPDSVVEDILGSDLPNLEKLVL-----------------YVGVEDYGFDGDMNVF 242

Query: 179 VATTLGQNLVHLDSLDLSNCHLKGPLSED--AFVNATKLRTLYLSGNPLS---AADLSVA 233
                     +L  L + +   +  + E         +L T+ +S   L+   A  L   
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 234 LKPLTKLHRLSLRNCGLS 251
           +  +  L  ++++   LS
Sbjct: 303 VDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.3 bits (119), Expect = 1e-06
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 23/174 (13%)

Query: 127 HIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQN 186
            +D + VL  +  L+ L ++ +   ++      N   L++L +    L D  V   LG +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPN---LKSLEIISGGLPDSVVEDILGSD 217

Query: 187 LVHLDSLDLSNC-----------HLKGPLSEDAFVNATKLRTLYLSGNPLS--AADLSVA 233
           L +L+ L L                +   S+D F     L+ L +          ++ + 
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF---PNLKWLGIVDAEEQNVVVEMFLE 274

Query: 234 LKPLTKLHRLSLRNCGLS----RLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
              L +L  + +    L+    RL  +   +   L+ +++ +N L D     L 
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 27/203 (13%), Positives = 58/203 (28%), Gaps = 42/203 (20%)

Query: 164 LRNLNLAENELIDLDVA----TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
              L   + +  + +++      L   L  +  L+         LS         L++L 
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRP-NLKSLE 199

Query: 220 LSGNPLSAADL-SVALKPLTKLHRLSLR--------NCGLSRL-PANTFHRFTCLQELDI 269
           +    L  + +  +    L  L +L L         +  ++   P  +  RF  L+ L I
Sbjct: 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259

Query: 270 SHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL-----ET 324
                 +    +                           +  L+T+ +S   L       
Sbjct: 260 VDAEEQNVVVEMFL---------------------ESDILPQLETMDISAGVLTDEGARL 298

Query: 325 LESGLFQNLTHLSVLELNNCGLT 347
           L   +   + HL  + +    L+
Sbjct: 299 LLDHV-DKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 4e-05
 Identities = 33/261 (12%), Positives = 64/261 (24%), Gaps = 22/261 (8%)

Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL 174
           K       +         +     ++     + +   +  +        +       +  
Sbjct: 51  KAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLK 110

Query: 175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVAL 234
                            +  +     K    E  F          +S       DLS  L
Sbjct: 111 QITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQV--DLSPVL 168

Query: 235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALL--SPLESLEHLD 292
             +  L+ L ++      +          L+ L+I    L D+    +  S L +LE L 
Sbjct: 169 DAMPLLNNLKIKGTNNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225

Query: 293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNET 352
           +                  L                 F NL  L    + +     +   
Sbjct: 226 LYVGVEDYGFDGDMNVFRPL------------FSKDRFPNLKWLG---IVDAEEQNVVVE 270

Query: 353 VFHENYTYPDLEELRLSGNPL 373
           +F E+   P LE + +S   L
Sbjct: 271 MFLESDILPQLETMDISAGVL 291

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 417 PDLEELRLSGNPLHVLPTGN-------LLPPQLSRLRSLDLSRCKIDYLPPNVFNNTR-- 467
           P+LE+L L          G+           +   L+ L +   +   +   +F  +   
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 468 -NITSLNLANNNLSMTS-ELSFQFLDVLLELESLDLSNNNLTH 508
             + +++++   L+     L    +D +  L+ +++  N L+ 
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 7e-07
 Identities = 70/480 (14%), Positives = 146/480 (30%), Gaps = 126/480 (26%)

Query: 141 DTLDLRQSGIS--------NLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDS 192
           D  D+ +S +S           D V         L   + E++   V   L  N   L S
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 193 LDLSNCHLKGP-LSEDAFVNATKLRTLYLSGNPLSAADLSVA-LKPLTKLHR--LSLRN- 247
              +    + P +    ++   +   LY      +    +V+ L+P  KL +  L LR  
Sbjct: 97  PIKTEQ--RQPSMMTRMYI--EQRDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELRPA 150

Query: 248 ----------CGLSRLPANT--FHRFTCLQE-----LDISHNPLIDAFTALLSPLESLEH 290
                      G + +  +    ++  C  +     L++ +    ++   +L  L+ L +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQKLLY 207

Query: 291 -LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF-----QNLTHLSVLELNNC 344
            +D  +++    S +  L++ S++  +    K +  E+ L      QN    +   L+ C
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-C 266

Query: 345 GL---TRLNETVF----HENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFD 397
            +   TR  + V         T+  L+   ++     + PD  K                
Sbjct: 267 KILLTTR-FKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKS--------------- 305

Query: 398 FLVILF--ILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRL---------- 445
               L    L+           DL    L+ NP  +      +   L+            
Sbjct: 306 ----LLLKYLDCRPQ-------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 446 --RSLDLSRCKIDYLPPN----------VFNNTRNITSLNLANNNLSMTSELSFQFLDVL 493
               ++ S   ++ L P           VF  + +I ++ L+     +        ++ L
Sbjct: 355 LTTIIESS---LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 494 LELESLDLSNNNLTHISPTVLR------------HNRAITS--IKLVGNPWKCDCNIADM 539
            +   ++      T   P++              H   +    I    +         D 
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET 324
           Q LD+      D      +    L       + L+ I       +  L +L LS N+L  
Sbjct: 130 QALDLKGLRS-DPDLVAQNIDVVLNRRSCMAATLRIIEE----NIPELLSLNLSNNRLYR 184

Query: 325 LE--SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQ 382
           L+  S + Q   +L +L L+   L    E    +      LEEL L GN L         
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG---LKLEELWLDGNSLCDTFRDQST 241

Query: 383 Y 383
           Y
Sbjct: 242 Y 242

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 146 RQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLS 205
           R+S ++     +  N   L +LNL+ N L  LD  +++ Q   +L  L+LS   LK    
Sbjct: 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ER 212

Query: 206 EDAFVNATKLRTLYLSGNPL 225
           E   +   KL  L+L GN L
Sbjct: 213 ELDKIKGLKLEELWLDGNSL 232

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL- 274
           + L L G  L +    VA      L+R S     L  +  N       L  L++S+N L 
Sbjct: 130 QALDLKG--LRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN----IPELLSLNLSNNRLY 183

Query: 275 -IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES 327
            +D  ++++    +L+ L++  + L+       +K   L+ L L GN L     
Sbjct: 184 RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFR 237

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 19/133 (14%)

Query: 157 VFANNTWLRNLNLAENELIDLDVATTLGQNL---VHLDSLDLSNCHLKGPLSEDAFVNA- 212
           +  N+  L  +NL     I +       + L    ++    +            A     
Sbjct: 31  IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAFALAEML 89

Query: 213 ---TKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNC-------GLSRLPANTFH 259
                L++L +  N +S      L  AL+  T L  L + N            + AN   
Sbjct: 90  KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI-ANMLE 148

Query: 260 RFTCLQELDISHN 272
           + T L +      
Sbjct: 149 KNTTLLKFGYHFT 161

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 16/132 (12%)

Query: 157 VFANNTWLRNLNLAENELIDLDVATTLGQNLV---HLDSLDLSNCHLKGPLSE---DAFV 210
           +  ++T L+ +N+   + +  +   +L +      H++   L+N  +    +    +   
Sbjct: 36  LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE 95

Query: 211 NATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRF------ 261
            +  LR L +  N L+    A L  +      +      N   S L              
Sbjct: 96  TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE 155

Query: 262 -TCLQELDISHN 272
              L  + IS  
Sbjct: 156 NESLLRVGISFA 167

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 42/305 (13%), Positives = 79/305 (25%), Gaps = 64/305 (20%)

Query: 59  FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC----NLTYISPSAFDNLNHL 114
                 +L  LD+S   +++             Y+ +         + +          L
Sbjct: 44  LRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103

Query: 115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN-E 173
           + + LS                             I N+ D  F     L+   + +   
Sbjct: 104 EKVILS---------------------------EKIKNIEDAAFKGCDNLKICQIRKKTA 136

Query: 174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA 233
              L  A       + +          K      AF+    L T    G           
Sbjct: 137 PNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA---------- 186

Query: 234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI---DAFTALLSPLESLEH 290
                           + +L           ++++            F  +   + +L  
Sbjct: 187 ----------------MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVS 230

Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL-SVLELNNCGLTRL 349
           LD+  +N   I   TF +   L  + L  + L+T+   +F N   L   LEL    +T +
Sbjct: 231 LDISKTNATTIPDFTFAQKKYLLKIKLP-HNLKTIGQRVFSNCGRLAGTLELPA-SVTAI 288

Query: 350 NETVF 354
               F
Sbjct: 289 EFGAF 293

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 53/330 (16%), Positives = 100/330 (30%), Gaps = 63/330 (19%)

Query: 11  RRNLDNPGLITINL-NANPIQPVEGAFLVARSLLYLYMQECT----LSKINPQFFTNLTT 65
           R    +  L  +++ NA        A        Y+YM         S +         T
Sbjct: 45  RDEFPS--LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102

Query: 66  LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
           L K+ LS   ++ IE   F    +L+   + +     + P A  +      + L  +   
Sbjct: 103 LEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161

Query: 126 SHIDW--TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN-ELIDLDVATT 182
              +            L+T       +  L D +       R++N       +D      
Sbjct: 162 RFKNRWEHFAFIEGEPLETTIQ-VGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKL 220

Query: 183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR 242
           +   + +L SLD+S  +    + +  F     L  + L  N             L  + +
Sbjct: 221 IRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-------------LKTIGQ 266

Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
               NC   RL             L++                          +++  I 
Sbjct: 267 RVFSNC--GRL----------AGTLELP-------------------------ASVTAIE 289

Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQN 332
              F+   +L+ ++ +G+K+ TL   LF N
Sbjct: 290 FGAFMGCDNLRYVLATGDKITTLGDELFGN 319

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 16/104 (15%), Positives = 44/104 (42%), Gaps = 11/104 (10%)

Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN------LQRIS 302
             + LP     ++  +Q +D + + ++      +  L+ +E + +   +      L+R+S
Sbjct: 49  DYNHLPTGPLDKYK-IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS 107

Query: 303 RSTFLKMTSLKTLILSGNKLETLESGL--FQNLTHLSVLELNNC 344
           +   L+  S+  + +      T + G+    +  +L  L L++ 
Sbjct: 108 QLENLQ-KSMLEMEIISCGNVT-DKGIIALHHFRNLKYLFLSDL 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	694
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.85
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.72
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.64
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.11
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	96.92
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	96.8
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	95.9
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	95.86
4aoj_A	329	High affinity nerve growth factor receptor; transf	95.83
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	95.72
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	95.24
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	94.99
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	94.89
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	94.77
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	94.66
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	94.53
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	94.46
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	94.16
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	93.95
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	93.78
3q4u_A	301	Activin receptor type-1; structural genomics conso	93.73
3soc_A	322	Activin receptor type-2A; structural genomics cons	93.58
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	93.56
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	93.42
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	93.42
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	93.37
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	93.21
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	93.1
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	93.09
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	93.05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	93.05
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	92.96
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	92.84
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	92.75
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	92.75
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	92.38
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	92.35
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	92.35
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	92.19
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	92.1
3an0_A	340	Dual specificity mitogen-activated protein kinase;	92.05
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	91.99
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	91.95
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	91.95
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	91.76
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	91.7
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	91.66
3fme_A	290	Dual specificity mitogen-activated protein kinase;	91.66
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	91.64
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	91.57
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	91.54
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	91.53
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	91.5
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	91.46
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	91.43
3niz_A	311	Rhodanese family protein; structural genomics, str	91.42
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	91.15
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	91.12
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	91.04
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	91.02
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	90.99
3aln_A	327	Dual specificity mitogen-activated protein kinase;	90.98
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	90.96
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	90.92
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	90.8
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	90.7
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	90.65
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	90.65
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	90.64
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	90.58
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	90.57
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	90.52
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	90.5
3pls_A	298	Macrophage-stimulating protein receptor; protein k	90.48
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	90.44
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	90.4
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	90.39
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	90.34
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	90.33
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	90.26
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	90.23
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	90.19
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	90.19
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	89.99
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	89.96
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	89.85
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	89.84
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	89.83
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	89.81
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	89.75
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	89.73
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	89.69
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	89.68
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	89.6
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	89.58
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	89.56
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	89.56
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	89.54
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	89.51
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	89.43
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	89.42
3uqc_A	286	Probable conserved transmembrane protein; structur	89.37
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	89.37
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	89.33
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	89.27
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	89.18
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	89.16
3ork_A	311	Serine/threonine protein kinase; structural genomi	89.14
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	89.11
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	89.11
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	89.09
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	89.08
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	89.05
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	88.85
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	88.84
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	88.83
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	88.83
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	88.8
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	88.71
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	88.7
2dyl_A	318	Dual specificity mitogen-activated protein kinase	88.64
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	88.54
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	88.51
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	88.51
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	88.32
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	88.29
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	88.2
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	88.19
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	88.03
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	88.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	87.92
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	87.79
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	87.78
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	87.77
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	87.77
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	87.74
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	87.74
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	87.71
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	87.71
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	87.61
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	87.56
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	87.53
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	87.47
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	87.47
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	87.46
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	87.35
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	87.21
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	87.14
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	87.14
3bhy_A	283	Death-associated protein kinase 3; death associate	87.13
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	87.11
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	87.06
2a19_B	284	Interferon-induced, double-stranded RNA-activated	87.01
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	86.99
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	86.91
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	86.86
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	86.86
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	86.84
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	86.81
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	86.75
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	86.74
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	86.63
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	86.57
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	86.5
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	86.45
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	86.42
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	86.37
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	86.31
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	86.31
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	86.26
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	86.23
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	86.19
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	86.14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	86.14
3o0g_A	292	Cell division protein kinase 5; kinase activator c	86.12
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	86.1
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	86.09
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	86.09
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	85.98
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	85.91
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	85.9
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	85.89
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	85.69
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	85.68
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	85.64
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	85.63
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	85.62
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	85.61
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	85.54
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	85.45
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	85.34
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	85.32
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	85.31
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	85.15
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	85.13
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	85.11
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	85.07
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	85.07
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	85.07
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	85.05
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	85.02
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	84.97
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	84.9
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	84.78
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	84.78
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	84.72
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	84.71
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	84.69
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	84.61
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	84.55
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.54
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	84.47
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	84.4
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	84.28
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	84.2
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	84.02
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	84.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	83.83
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	83.53
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	83.5
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	83.48
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	83.48
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	83.41
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	83.38
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	83.36
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	83.27
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	83.26
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	83.24
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	83.19
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	82.93
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	82.93
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	82.9
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	82.87
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	82.83
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	82.71
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	82.69
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	82.6
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	82.44
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	82.35
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	82.33
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	82.17
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	81.79
3rp9_A	458	Mitogen-activated protein kinase; structural genom	81.61
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	81.55
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	81.55
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	81.35
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	81.1
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	81.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	80.95
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	80.92
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	80.41
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	80.34

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.1e-55  Score=488.16  Aligned_cols=483  Identities=23%  Similarity=0.324  Sum_probs=400.4

Q ss_pred             CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329          17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML   95 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L   95 (694)
                      +++++|+|++|.++.++ ..|..+++|++|++++|.+..+.|.+|.++++|++|++++|.++.+.+..|+++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            47999999999999885 78999999999999999999999999999999999999999999998888999999999999


Q ss_pred             CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCc--EEeCCCCC
Q psy3329          96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR--NLNLAENE  173 (694)
Q Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~--~L~l~~n~  173 (694)
                      ++|.++++.+..+.++++|++|++++|.+..+.. + .+..+++|++|++++|.++.+.+..+..+++|+  .|++++|.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-P-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-C-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCc-c-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            9999999888889999999999999999886422 2 344589999999999999999888889999999  89999998


Q ss_pred             CCCcchhhhccc-----------------------------------------------C--CCcccEEeCCCCCCCCCC
Q psy3329         174 LIDLDVATTLGQ-----------------------------------------------N--LVHLDSLDLSNCHLKGPL  204 (694)
Q Consensus       174 l~~~~~~~~~~~-----------------------------------------------~--~~~L~~L~l~~n~~~~~~  204 (694)
                      +.+.....+...                                               .  ..+|+.|++++|.+ ..+
T Consensus       191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l-~~~  269 (606)
T 3t6q_A          191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF-FNI  269 (606)
T ss_dssp             CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC-SSC
T ss_pred             cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc-Ccc
Confidence            876554332110                                               0  01577777777777 455


Q ss_pred             ChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccch-hhcC
Q psy3329         205 SEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFT-ALLS  283 (694)
Q Consensus       205 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~  283 (694)
                      +...|..+++|+.|++++|.++..+.  .+..+++|++|++++|.++.+++..+..+++|+.|++++|.+.+.++ ..+.
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCSCCCS--SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             CHHHhccccCCCEEeccCCccCCCCh--hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence            55667788888888888888775432  35777888888888888888777778888888888888888775443 3477


Q ss_pred             CCCCCcEEECcCCCCcccC--hhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCc-cccccCCCC
Q psy3329         284 PLESLEHLDMGYSNLQRIS--RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE-TVFHENYTY  360 (694)
Q Consensus       284 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~  360 (694)
                      .+++|++|++++|.++.+.  +..+..+++|++|++++|.+.++.+..+..+++|+.|++++|.++...+ ..+.   .+
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l  424 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ---NL  424 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT---TC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh---Cc
Confidence            7888888888888887765  5677788888888888888888777778888888888888888876533 3354   67


Q ss_pred             CCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCccc---CCCCC
Q psy3329         361 PDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL---PTGNL  437 (694)
Q Consensus       361 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~  437 (694)
                      ++|+.|++++|.+...+.           ..                  +..   +++|++|++++|.+++.   .+..+
T Consensus       425 ~~L~~L~l~~n~l~~~~~-----------~~------------------~~~---l~~L~~L~L~~n~l~~~~~~~~~~~  472 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSE-----------QL------------------FDG---LPALQHLNLQGNHFPKGNIQKTNSL  472 (606)
T ss_dssp             TTCCEEECTTCCCBTTCT-----------TT------------------TTT---CTTCCEEECTTCBCGGGEECSSCGG
T ss_pred             ccCCEEECCCCccCCcCH-----------HH------------------HhC---CCCCCEEECCCCCCCccccccchhh
Confidence            888888888887764332           11                  223   89999999999999873   22445


Q ss_pred             CCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCC
Q psy3329         438 LPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHN  517 (694)
Q Consensus       438 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~  517 (694)
                        ..+++|+.|+|++|.++++++..|.++++|+.|+|++|++++..|..+   ..++.| .|++++|++++.+|..+..+
T Consensus       473 --~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L-~L~L~~N~l~~~~~~~~~~l  546 (606)
T 3t6q_A          473 --QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL---SHLKGI-YLNLASNHISIILPSLLPIL  546 (606)
T ss_dssp             --GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG---TTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred             --ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh---Cccccc-EEECcCCcccccCHhhcccC
Confidence              889999999999999999999999999999999999999999999888   889999 99999999999999999999


Q ss_pred             CcccEEEccCCccccccCcHHHHHHHHh
Q psy3329         518 RAITSIKLVGNPWKCDCNIADMWEWATR  545 (694)
Q Consensus       518 ~~l~~l~l~~N~~~c~c~~~~~~~~~~~  545 (694)
                      ++|+.+++++|||.|+|+..|+..|++.
T Consensus       547 ~~L~~L~l~~N~~~c~c~~~~~~~w~~~  574 (606)
T 3t6q_A          547 SQQRTINLRQNPLDCTCSNIYFLEWYKE  574 (606)
T ss_dssp             HTSSEEECTTCCEECSGGGHHHHHHHHH
T ss_pred             CCCCEEeCCCCCccccCCcHHHHHHHHh
Confidence            9999999999999999999999999986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.7e-54  Score=491.02  Aligned_cols=505  Identities=25%  Similarity=0.325  Sum_probs=309.9

Q ss_pred             CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329          17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML   95 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L   95 (694)
                      +++++|+|++|.++.++ ..|..+++|++|++++|.+.++.|.+|.++++|++|++++|.++.+++..|.++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            34555555555555544 34555555555555555555555555555555555555555555554444555555555555


Q ss_pred             CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccC--CCCCCcEEeCCCCC
Q psy3329          96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA--NNTWLRNLNLAENE  173 (694)
Q Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~~~~L~~L~l~~n~  173 (694)
                      ++|.++++.+..|+++++|++|++++|.+....  +..+.++++|++|++++|.++.+++..+.  .+++|++|++++|.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            555555554445555555555555555544321  12344445555555555544444433222  23444444444444


Q ss_pred             CCCcc---------------------------------------------------hhhhcccCCCcccEEeCCCCCCCC
Q psy3329         174 LIDLD---------------------------------------------------VATTLGQNLVHLDSLDLSNCHLKG  202 (694)
Q Consensus       174 l~~~~---------------------------------------------------~~~~~~~~~~~L~~L~l~~n~~~~  202 (694)
                      +.+..                                                   ...+..-..++|+.|++++|.+. 
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-  261 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-  261 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-
Confidence            33322                                                   11111101123667777766663 


Q ss_pred             CCChhhhhcCCCCcEEEcCCCCCCccchhh--------------------------------hccCCCCccEEEccCcCC
Q psy3329         203 PLSEDAFVNATKLRTLYLSGNPLSAADLSV--------------------------------ALKPLTKLHRLSLRNCGL  250 (694)
Q Consensus       203 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------------------------~l~~l~~L~~L~l~~n~i  250 (694)
                      .+++..|..+++|+.|++++|.+.......                                .+..+++|+.|++++|.+
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l  341 (680)
T 1ziw_A          262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI  341 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence            333345666677777777766665443221                                123345555555555555


Q ss_pred             CcCCcccccCCCCccEEeCCCCCCcc--cchhhcCC--CCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccC-c
Q psy3329         251 SRLPANTFHRFTCLQELDISHNPLID--AFTALLSP--LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET-L  325 (694)
Q Consensus       251 ~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~  325 (694)
                      +++++..|..+++|++|++++|.+..  .....+..  .++|+.|++++|.++++.+..|..+++|+.|++++|.+.+ +
T Consensus       342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  421 (680)
T 1ziw_A          342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL  421 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred             CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence            55555555555555555555544221  11111111  1345555556666666767777788888888888888764 4


Q ss_pred             CchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhh--
Q psy3329         326 ESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILF--  403 (694)
Q Consensus       326 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~--  403 (694)
                      ++..+.++++|++|++++|+++.+....|.   .+++|+.|++++|.+..+.         .+|..+ ..+..+..+.  
T Consensus       422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~---------~~p~~~-~~l~~L~~L~Ls  488 (680)
T 1ziw_A          422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFA---LVPSLQRLMLRRVALKNVD---------SSPSPF-QPLRNLTILDLS  488 (680)
T ss_dssp             CSGGGTTCTTCCEEECCSCSEEECCTTTTT---TCTTCCEEECTTSCCBCTT---------CSSCTT-TTCTTCCEEECC
T ss_pred             CcccccCcccccEEecCCCCcceeChhhhh---cCcccccchhccccccccc---------cCCccc-ccCCCCCEEECC
Confidence            456677888888888888888777766666   6777777777777765321         111111 0111111100  


Q ss_pred             -----hhcccccccCCCCCCCceEEcCCCCCcccCCC--------CCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC
Q psy3329         404 -----ILNETVFHENYTYPDLEELRLSGNPLHVLPTG--------NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT  470 (694)
Q Consensus       404 -----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  470 (694)
                           .+....|.+   +++|++|++++|.+++++..        .+  .++++|+.|+|++|+++.+++..|.++++|+
T Consensus       489 ~N~l~~i~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~--~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          489 NNNIANINDDMLEG---LEKLEILDLQHNNLARLWKHANPGGPIYFL--KGLSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             SSCCCCCCTTTTTT---CTTCCEEECCSSCCGGGGSTTSTTSCCCTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCcCChhhhcc---ccccCEEeCCCCCccccchhhccCCcchhh--cCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence                 011122444   88999999999999987433        24  7889999999999999999999999999999


Q ss_pred             EEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhc-CCCcccEEEccCCccccccCc-HHHHHHHHh
Q psy3329         471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLR-HNRAITSIKLVGNPWKCDCNI-ADMWEWATR  545 (694)
Q Consensus       471 ~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~l~~l~l~~N~~~c~c~~-~~~~~~~~~  545 (694)
                      .|+|++|+++++++..|   ..+++|+.|+|++|+++++++..+. .+++|+.+++++|||.|+|+. .||..|...
T Consensus       564 ~L~Ls~N~l~~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~  637 (680)
T 1ziw_A          564 IIDLGLNNLNTLPASVF---NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE  637 (680)
T ss_dssp             EEECCSSCCCCCCTTTT---TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSC
T ss_pred             eeECCCCCCCcCCHhHh---CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHh
Confidence            99999999999998888   8899999999999999999998887 789999999999999999996 999888754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.6e-53  Score=474.97  Aligned_cols=475  Identities=24%  Similarity=0.342  Sum_probs=374.5

Q ss_pred             CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329          17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML   95 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L   95 (694)
                      +++++|+|++|.++.++ ..|..+++|++|++++|.++.+.|.+|.++++|++|++++|.++.+.+..|+++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            68999999999999887 58899999999999999999998889999999999999999999988888999999999999


Q ss_pred             CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCc----EEeCCC
Q psy3329          96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR----NLNLAE  171 (694)
Q Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~----~L~l~~  171 (694)
                      ++|.++++.+..++++++|++|++++|.+... .+|..++++++|++|++++|.++.+++..++.+.+|+    +|++++
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            99999998878899999999999999988742 3567888999999999999999988877666665554    799999


Q ss_pred             CCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhh-------------------------------------------
Q psy3329         172 NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDA-------------------------------------------  208 (694)
Q Consensus       172 n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-------------------------------------------  208 (694)
                      |.++.++...+   ...+|+.|++++|.+.+...+..                                           
T Consensus       191 n~l~~~~~~~~---~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  267 (606)
T 3vq2_A          191 NPIDFIQDQAF---QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR  267 (606)
T ss_dssp             CCCCEECTTTT---TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred             CCcceeCcccc---cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence            98887655444   23378888888876532211122                                           


Q ss_pred             -------------hhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCc
Q psy3329         209 -------------FVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI  275 (694)
Q Consensus       209 -------------~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~  275 (694)
                                   +..+++|+.|++++|.+...+   .+..+++|+.|++++|.+..++  .+ .+++|+.|++++|...
T Consensus       268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp--~~-~l~~L~~L~l~~n~~~  341 (606)
T 3vq2_A          268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFP--TL-DLPFLKSLTLTMNKGS  341 (606)
T ss_dssp             ECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCC--CC-CCSSCCEEEEESCSSC
T ss_pred             ccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccc--cC-CCCccceeeccCCcCc
Confidence                         344566666666666665544   3456667777777777776655  23 6677777777777544


Q ss_pred             ccchhhcCCCCCCcEEECcCCCCcccC--hhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCc-c
Q psy3329         276 DAFTALLSPLESLEHLDMGYSNLQRIS--RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE-T  352 (694)
Q Consensus       276 ~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~  352 (694)
                      +.+  .+..+++|++|++++|.++++.  +..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.++++++ .
T Consensus       342 ~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~  418 (606)
T 3vq2_A          342 ISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFS  418 (606)
T ss_dssp             EEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred             cch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChh
Confidence            433  4556777777777777776653  556677777777777777777655 456677777777777777776554 4


Q ss_pred             ccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcc-
Q psy3329         353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHV-  431 (694)
Q Consensus       353 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-  431 (694)
                      .+.   .+++|+.|++++|.+.....           ..                  +..   +++|++|++++|.+++ 
T Consensus       419 ~~~---~l~~L~~L~l~~n~l~~~~~-----------~~------------------~~~---l~~L~~L~l~~n~l~~~  463 (606)
T 3vq2_A          419 AFL---SLEKLLYLDISYTNTKIDFD-----------GI------------------FLG---LTSLNTLKMAGNSFKDN  463 (606)
T ss_dssp             TTT---TCTTCCEEECTTSCCEECCT-----------TT------------------TTT---CTTCCEEECTTCEEGGG
T ss_pred             hhh---ccccCCEEECcCCCCCccch-----------hh------------------hcC---CCCCCEEECCCCcCCCc
Confidence            454   67777777777777654321           11                  223   8999999999999998 


Q ss_pred             cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329         432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP  511 (694)
Q Consensus       432 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~  511 (694)
                      ..+..+  ..+++|+.|+|++|.++++++..|.++++|++|+|++|++++.+|..|   ..+++|+.|+|++|+++.+++
T Consensus       464 ~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~p~  538 (606)
T 3vq2_A          464 TLSNVF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY---NQLYSLSTLDCSFNRIETSKG  538 (606)
T ss_dssp             EECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT---TTCTTCCEEECTTSCCCCEES
T ss_pred             chHHhh--ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc---cCCCcCCEEECCCCcCcccCH
Confidence            567777  899999999999999999999999999999999999999999999888   889999999999999997655


Q ss_pred             hhhcCCC-cccEEEccCCccccccCcHHHHHHHHh
Q psy3329         512 TVLRHNR-AITSIKLVGNPWKCDCNIADMWEWATR  545 (694)
Q Consensus       512 ~~~~~~~-~l~~l~l~~N~~~c~c~~~~~~~~~~~  545 (694)
                      . +..++ +|+.+++++|||.|+|+..|+..|.+.
T Consensus       539 ~-~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~  572 (606)
T 3vq2_A          539 I-LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE  572 (606)
T ss_dssp             C-GGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred             h-HhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence            5 77776 699999999999999999999999865

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.1e-52  Score=476.31  Aligned_cols=494  Identities=22%  Similarity=0.226  Sum_probs=350.4

Q ss_pred             ccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCC
Q psy3329          12 RNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLE   91 (694)
Q Consensus        12 ~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~   91 (694)
                      .+..+++|++|++++|.++.....+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..  .+++|+
T Consensus       195 ~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~  272 (768)
T 3rgz_A          195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ  272 (768)
T ss_dssp             BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred             CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence            346677777777777777754433777777777777777777666777777777777777777776655542  677777


Q ss_pred             EEeCCCCcCCccChhhhcCC-CCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCC-CCCccccCCCCCCcEEeC
Q psy3329          92 YLMLNRCNLTYISPSAFDNL-NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS-NLPDNVFANNTWLRNLNL  169 (694)
Q Consensus        92 ~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~l  169 (694)
                      +|++++|.+++..|..+... ++|++|++++|.+..  .+|..++++++|++|++++|.+. .++...+..+++|++|++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L  350 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG--AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL  350 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE--CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC--ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence            77777777776666666554 778888888877763  34466777788888888888776 555555777888888888


Q ss_pred             CCCCCCCcchhhhcccCCC-cccEEeCCCCCCCCCCChhhhhc--CCCCcEEEcCCCCCCccchhhhccCCCCccEEEcc
Q psy3329         170 AENELIDLDVATTLGQNLV-HLDSLDLSNCHLKGPLSEDAFVN--ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR  246 (694)
Q Consensus       170 ~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  246 (694)
                      ++|.+.+.....+ . .++ +|+.|++++|.+.+.++.. +..  +++|+.|++++|.+++..+. .+..+++|+.|+++
T Consensus       351 s~n~l~~~~p~~l-~-~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls  426 (768)
T 3rgz_A          351 SFNEFSGELPESL-T-NLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLS  426 (768)
T ss_dssp             CSSEEEECCCTTH-H-HHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECC
T ss_pred             cCCccCccccHHH-H-hhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECc
Confidence            8877653222211 1 344 7888888888776666543 333  67788888888887755443 45778888899998


Q ss_pred             CcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcC
Q psy3329         247 NCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE  326 (694)
Q Consensus       247 ~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  326 (694)
                      +|.+++..+..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++..+..+.++++|+.|+|++|++.+..
T Consensus       427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  506 (768)
T 3rgz_A          427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI  506 (768)
T ss_dssp             SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence            88888777778888888999999999888888888888888999999999888877788888899999999999888888


Q ss_pred             chhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhh-----
Q psy3329         327 SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI-----  401 (694)
Q Consensus       327 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~-----  401 (694)
                      +..+..+++|++|++++|++++..+..+.   .+++|+.|++++|++++           .+|..++........     
T Consensus       507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~g-----------~ip~~~~~~~~~~~~~~~~~  572 (768)
T 3rgz_A          507 PKWIGRLENLAILKLSNNSFSGNIPAELG---DCRSLIWLDLNTNLFNG-----------TIPAAMFKQSGKIAANFIAG  572 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGG---GCTTCCEEECCSSEEES-----------BCCGGGGTTTTCBCCSTTCS
T ss_pred             ChHHhcCCCCCEEECCCCcccCcCCHHHc---CCCCCCEEECCCCccCC-----------cCChHHhcccchhhhhcccc
Confidence            88888888999999999988876555565   78889999999988863           233322211000000     


Q ss_pred             -----------------------hhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCcc
Q psy3329         402 -----------------------LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYL  458 (694)
Q Consensus       402 -----------------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  458 (694)
                                             ........+.   .++.+..++++.|.+.+..+..+  ..+++|+.|||++|++++.
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~  647 (768)
T 3rgz_A          573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN---RLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGY  647 (768)
T ss_dssp             CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG---GGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSC
T ss_pred             ccccccccccccccccccccccccccccchhhh---ccccccccccccceecccCchhh--hccccccEEECcCCccccc
Confidence                                   0000000011   13344455666676777666666  6777777777777777777


Q ss_pred             CCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC
Q psy3329         459 PPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN  535 (694)
Q Consensus       459 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~  535 (694)
                      +|..++++++|+.|+|++|+++|.+|..+   +.+++|+.|||++|+++|.+|..+..+++|+.+++++|++.+..|
T Consensus       648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          648 IPKEIGSMPYLFILNLGHNDISGSIPDEV---GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGG---GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             CCHHHhccccCCEEeCcCCccCCCCChHH---hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            77777777777777777777777777776   677777777777777777777777777777777777777766443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-51  Score=475.56  Aligned_cols=507  Identities=24%  Similarity=0.335  Sum_probs=333.3

Q ss_pred             CCCCceEEECcCCCCcchh-hhhhcCCCCcEEEccCC-cCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCE
Q psy3329          15 DNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQEC-TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY   92 (694)
Q Consensus        15 ~~~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~   92 (694)
                      -.+++++|+|++|.++.++ ..|..+++|++|++++| .+..+.|.+|.++++|++|+|++|.+..+.+..|.++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            4578999999999999775 78899999999999998 455666888999999999999999999988888999999999


Q ss_pred             EeCCCCcCCccChhh--hcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCC--CCCcEEe
Q psy3329          93 LMLNRCNLTYISPSA--FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANN--TWLRNLN  168 (694)
Q Consensus        93 L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~--~~L~~L~  168 (694)
                      |+|++|.+++..+..  +.++++|++|++++|.+.... .+..++++++|++|++++|.++.+.+..+..+  ++|+.|+
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            999999998854444  889999999999999887542 23468889999999999999988887777766  7889999


Q ss_pred             CCCCCCCCcchhhhcccCCC------cccEEeCCCCCCCCCCChhhhhc--CCCCcEEEcCCCC---------CCccchh
Q psy3329         169 LAENELIDLDVATTLGQNLV------HLDSLDLSNCHLKGPLSEDAFVN--ATKLRTLYLSGNP---------LSAADLS  231 (694)
Q Consensus       169 l~~n~l~~~~~~~~~~~~~~------~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~L~~n~---------l~~~~~~  231 (694)
                      ++.|.+.......+.  .+.      .|+.|++++|.+.+.++......  .+.++.+.++.+.         +......
T Consensus       181 L~~n~l~~~~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          181 LAANSLYSRVSVDWG--KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             ECCSBSCCCCCCCCC--SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             CCCCccccccccchh--hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            998887764322211  222      38899999887755554322111  1233444433111         1111111


Q ss_pred             hhccC--CCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCC
Q psy3329         232 VALKP--LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM  309 (694)
Q Consensus       232 ~~l~~--l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  309 (694)
                       .+..  .++|+.|++++|.+..+.+..|..+++|+.|++++|.+.+..+..|..+++|++|+|++|.++.+.+..|.++
T Consensus       259 -~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (844)
T 3j0a_A          259 -TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL  337 (844)
T ss_dssp             -TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred             -hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence             1111  1345555555555544444444445555555555555544444444555555555555555544444444555


Q ss_pred             CCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCccc--------
Q psy3329         310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK--------  381 (694)
Q Consensus       310 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--------  381 (694)
                      ++|+.|++++|.+..+++..|..+++|+.|++++|.++.++        .+++|+.|++++|+++.++....        
T Consensus       338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls  409 (844)
T 3j0a_A          338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH--------FIPSIPDIFLSGNKLVTLPKINLTANLIHLS  409 (844)
T ss_dssp             TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS--------SCCSCSEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc--------CCCCcchhccCCCCcccccccccccceeecc
Confidence            55555555555554444444444555555555555444332        13334444444444433322100        


Q ss_pred             ccccccccch-hccccchhhhhhhhc--------ccccccCCCCCCCceEEcCCCCCcccC-----CCCCCCcCCCCccE
Q psy3329         382 QYSMRTIPTQ-IWKNFDFLVILFILN--------ETVFHENYTYPDLEELRLSGNPLHVLP-----TGNLLPPQLSRLRS  447 (694)
Q Consensus       382 ~~~~~~ip~~-~~~~~~~l~~~~~~~--------~~~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~~~l~~L~~  447 (694)
                      ...+..++.. ....+..+..+....        ...+..   +++|+.|++++|.++..+     +..|  ..+++|+.
T Consensus       410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~~~~~~~--~~l~~L~~  484 (844)
T 3j0a_A          410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE---NPSLEQLFLGENMLQLAWETELCWDVF--EGLSHLQV  484 (844)
T ss_dssp             SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS---CTTCCBCEEESCCCSSSCCSCCCSSCS--SCBCCEEC
T ss_pred             cCccccCchhhhhhcCCccceeeCCCCccccccccccccc---CCccccccCCCCccccccccccchhhh--cCcccccE
Confidence            0000011000 000011111000000        001222   688999999999987443     3445  78899999


Q ss_pred             EEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccC
Q psy3329         448 LDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVG  527 (694)
Q Consensus       448 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~  527 (694)
                      |+|++|.|+++++..|.++++|+.|+|++|+++++++..+   .  ++|+.|+|++|++++.+|..+   .+|+.+++++
T Consensus       485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~  556 (844)
T 3j0a_A          485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL---P--ANLEILDISRNQLLAPNPDVF---VSLSVLDITH  556 (844)
T ss_dssp             CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC---C--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEE
T ss_pred             EECCCCcccccChhHccchhhhheeECCCCCCCccChhhh---h--ccccEEECCCCcCCCCChhHh---CCcCEEEecC
Confidence            9999999999999999999999999999999999988776   3  899999999999999988765   5789999999


Q ss_pred             CccccccCcHHHHHHHHhc
Q psy3329         528 NPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       528 N~~~c~c~~~~~~~~~~~~  546 (694)
                      |||.|+|++.||..|....
T Consensus       557 Np~~C~c~~~~f~~~~~~~  575 (844)
T 3j0a_A          557 NKFICECELSTFINWLNHT  575 (844)
T ss_dssp             ECCCCSSSCCSHHHHHHHT
T ss_pred             CCcccccccHHHHHHHHhc
Confidence            9999999999999998763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-51  Score=470.44  Aligned_cols=477  Identities=23%  Similarity=0.212  Sum_probs=334.0

Q ss_pred             cCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChh--hccCCCCCCeEECCCCCCCccCCCCC-CCCCC
Q psy3329          13 NLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQ--FFTNLTTLNKLDLSGNPLRIIEPGVF-DPLTS   89 (694)
Q Consensus        13 ~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~   89 (694)
                      +.++++|+.++++.+.+..+|..|..+++|++|+|++|.+.+..|.  .++++++|++|++++|.+.+..+..+ .++++
T Consensus        73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  152 (768)
T 3rgz_A           73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS  152 (768)
T ss_dssp             TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred             HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence            4444455555555444444445566666666777766666654455  56666777777777666654444333 56666


Q ss_pred             CCEEeCCCCcCCccChhh---hcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcE
Q psy3329          90 LEYLMLNRCNLTYISPSA---FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN  166 (694)
Q Consensus        90 L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~  166 (694)
                      |++|++++|.+++..+..   +.++++|++|++++|.+....+    +.++++|++|++++|.+.+..+. +..+++|++
T Consensus       153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~  227 (768)
T 3rgz_A          153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH  227 (768)
T ss_dssp             CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred             CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCE
Confidence            777777777666665555   5666677777777766654322    35667777777777776665554 666777777


Q ss_pred             EeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEcc
Q psy3329         167 LNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR  246 (694)
Q Consensus       167 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  246 (694)
                      |++++|.+++.....+.  .+++|++|++++|.+.+.++..   .+++|++|++++|.+++..+......+++|++|+++
T Consensus       228 L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls  302 (768)
T 3rgz_A          228 LDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS  302 (768)
T ss_dssp             EECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred             EECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence            77777766643222222  5667777777777665555532   566777777777766544333222334677777777


Q ss_pred             CcCCCcCCcccccCCCCccEEeCCCCCCcccchhh-cCCCCCCcEEECcCCCCcccChhhhcCCC-CCcEEeccCCcccC
Q psy3329         247 NCGLSRLPANTFHRFTCLQELDISHNPLIDAFTAL-LSPLESLEHLDMGYSNLQRISRSTFLKMT-SLKTLILSGNKLET  324 (694)
Q Consensus       247 ~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~  324 (694)
                      +|.+++..+..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++..+..+..++ +|+.|++++|.+.+
T Consensus       303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~  382 (768)
T 3rgz_A          303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG  382 (768)
T ss_dssp             SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred             CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence            77776665566677777777777777776555543 66777777777777777655555666665 67777777777665


Q ss_pred             cCchhhcC--CCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhh
Q psy3329         325 LESGLFQN--LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL  402 (694)
Q Consensus       325 ~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~  402 (694)
                      ..+..+..  +++|+.|++++|.+++..+..+.   .+++|+.|++++|++++.           +|..           
T Consensus       383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~-----------~p~~-----------  437 (768)
T 3rgz_A          383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGT-----------IPSS-----------  437 (768)
T ss_dssp             ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG---GCTTCCEEECCSSEEESC-----------CCGG-----------
T ss_pred             CcChhhhhcccCCccEEECCCCccccccCHHHh---cCCCCCEEECcCCcccCc-----------ccHH-----------
Confidence            54444444  56777777777777765555555   677777777777776532           2222           


Q ss_pred             hhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCC
Q psy3329         403 FILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT  482 (694)
Q Consensus       403 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  482 (694)
                             +..   +++|+.|++++|.+++..+..+  ..+++|+.|+|++|++++..|..+.++++|++|+|++|++++.
T Consensus       438 -------l~~---l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  505 (768)
T 3rgz_A          438 -------LGS---LSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE  505 (768)
T ss_dssp             -------GGG---CTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred             -------Hhc---CCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence                   223   8899999999999999888888  8999999999999999999899999999999999999999999


Q ss_pred             cchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHH
Q psy3329         483 SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM  539 (694)
Q Consensus       483 ~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~  539 (694)
                      +|..+   ..+++|++|+|++|++++.+|..+..+++|+.+++++|++.|.++..++
T Consensus       506 ~p~~~---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          506 IPKWI---GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             CCGGG---GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             CChHH---hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence            99888   8899999999999999999999999999999999999999999887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.8e-49  Score=445.71  Aligned_cols=484  Identities=24%  Similarity=0.277  Sum_probs=367.7

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN   99 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~   99 (694)
                      +.++++++.++.+|..+.  +++++|++++|.++++.+..|.++++|++|++++|.++++.+..|.++++|++|++++|.
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            579999999999996553  799999999999999999899999999999999999999999989999999999999999


Q ss_pred             CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcch
Q psy3329         100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV  179 (694)
Q Consensus       100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  179 (694)
                      ++.+++.+|.++++|++|++++|.+..+..  ..++++++|++|++++|.++..++..+..+++|++|++++|.+++...
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccCh--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence            999988889999999999999999985443  568899999999999999999998889999999999999999988765


Q ss_pred             hhhcccCCCcccEEeCCCCCCCCCCChhhhhcC---------------------------CC------------------
Q psy3329         180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA---------------------------TK------------------  214 (694)
Q Consensus       180 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~---------------------------~~------------------  214 (694)
                      ..+....+++|++|++++|.+.+..+ ..+..+                           ++                  
T Consensus       163 ~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~  241 (680)
T 1ziw_A          163 EELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT  241 (680)
T ss_dssp             HHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred             HHhhccccccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence            54432256789999999888744332 223221                           33                  


Q ss_pred             --------CcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcc-----cch--
Q psy3329         215 --------LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID-----AFT--  279 (694)
Q Consensus       215 --------L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~-----~~~--  279 (694)
                              |+.|++++|.++..... .+..+++|+.|++++|.+.++.+..+..+++|+.|++++|...+     .+|  
T Consensus       242 ~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i  320 (680)
T 1ziw_A          242 FLGLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI  320 (680)
T ss_dssp             TGGGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred             hhccCcCCCCEEECCCCCcCccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence                    44444444444433322 23444555555555555544444334444444444443332211     011  


Q ss_pred             --hhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEecc----------------------------CCcccCcCchh
Q psy3329         280 --ALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS----------------------------GNKLETLESGL  329 (694)
Q Consensus       280 --~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~----------------------------~n~l~~~~~~~  329 (694)
                        ..+..+++|++|++++|.++++.+..|.++++|++|+++                            +|++.++.+..
T Consensus       321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~  400 (680)
T 1ziw_A          321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA  400 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred             ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence              145556777777777777777776666666666655554                            45566666778


Q ss_pred             hcCCCCCCEEeCCCCCCcc-cCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhh----
Q psy3329         330 FQNLTHLSVLELNNCGLTR-LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI----  404 (694)
Q Consensus       330 l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~----  404 (694)
                      |..+++|+.|++++|.+++ ++...|.   .+++|++|++++|++..++....            ..+..+..+..    
T Consensus       401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~------------~~~~~L~~L~l~~n~  465 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLNEIGQELTGQEWR---GLENIFEIYLSYNKYLQLTRNSF------------ALVPSLQRLMLRRVA  465 (680)
T ss_dssp             TTTCTTCCEEECCSSCCEEECCSGGGT---TCTTCCEEECCSCSEEECCTTTT------------TTCTTCCEEECTTSC
T ss_pred             hhCCCCCCEEeCCCCcCccccCccccc---CcccccEEecCCCCcceeChhhh------------hcCcccccchhcccc
Confidence            8899999999999999986 6666776   89999999999999876543211            11111111100    


Q ss_pred             -----hcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCC--------CCCCCCCCCCE
Q psy3329         405 -----LNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPP--------NVFNNTRNITS  471 (694)
Q Consensus       405 -----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~  471 (694)
                           .....|..   +++|+.|++++|.++++++..|  ..+++|+.|+|++|.++++.+        ..|.++++|+.
T Consensus       466 l~~~~~~p~~~~~---l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~  540 (680)
T 1ziw_A          466 LKNVDSSPSPFQP---LRNLTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI  540 (680)
T ss_dssp             CBCTTCSSCTTTT---CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred             ccccccCCccccc---CCCCCEEECCCCCCCcCChhhh--ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence                 00112333   8899999999999999999888  899999999999999998643        33788999999


Q ss_pred             EEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329         472 LNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       472 L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c  532 (694)
                      |+|++|+++.+++..|   ..+++|+.|+|++|+++++++..|..+++|+.+++++|.+..
T Consensus       541 L~L~~N~l~~i~~~~~---~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          541 LNLESNGFDEIPVEVF---KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             EECCSSCCCCCCTTTT---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             EECCCCCCCCCCHHHc---ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence            9999999998877778   889999999999999999999989999999999999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.3e-49  Score=438.48  Aligned_cols=464  Identities=24%  Similarity=0.266  Sum_probs=329.6

Q ss_pred             ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329          19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      -+.+++++..++.+|..+.  +++++|++++|.++++.|.+|.++++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus        14 ~~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            3478999999999997664  47999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcc
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD  178 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~  178 (694)
                      .+++..|.+|+++++|++|++++|.++.+..  ..++++++|++|++++|.+..+....+..+++|++|++++|.+....
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  169 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS  169 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred             cccccChhhhcccccccEeeccccCcccCCc--chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence            9999999999999999999999999986543  45889999999999999999987666677999999999999998765


Q ss_pred             hhhhcccCCCccc--EEeCCCCCCCCCCChhhhhcCCCCcEEEc------------------------------------
Q psy3329         179 VATTLGQNLVHLD--SLDLSNCHLKGPLSEDAFVNATKLRTLYL------------------------------------  220 (694)
Q Consensus       179 ~~~~~~~~~~~L~--~L~l~~n~~~~~~~~~~~~~~~~L~~L~L------------------------------------  220 (694)
                      ...+.  .+++|+  .|++++|.+.+..+ ..+. ..+|+.|++                                    
T Consensus       170 ~~~~~--~l~~L~~l~L~l~~n~l~~~~~-~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~  245 (606)
T 3t6q_A          170 KEDMS--SLQQATNLSLNLNGNDIAGIEP-GAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP  245 (606)
T ss_dssp             HHHHH--TTTTCCSEEEECTTCCCCEECT-TTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred             hhhhh--hhcccceeEEecCCCccCccCh-hHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence            54443  678888  89999999854333 3332 234444444                                    


Q ss_pred             ----------------CCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCC
Q psy3329         221 ----------------SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSP  284 (694)
Q Consensus       221 ----------------~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  284 (694)
                                      ++|.++..... .+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..
T Consensus       246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~  323 (606)
T 3t6q_A          246 AVFEGLCEMSVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASN  323 (606)
T ss_dssp             GGGGGGGGSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred             hHhchhhcCceeEEEeecCccCccCHH-HhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchhhhhc
Confidence                            44444433322 23444555555555555554432 3444455555555555555444444445


Q ss_pred             CCCCcEEECcCCCCc-ccChhhhcCCCCCcEEeccCCcccCcC--chhhcCCCCCCEEeCCCCCCcccCccccccCCCCC
Q psy3329         285 LESLEHLDMGYSNLQ-RISRSTFLKMTSLKTLILSGNKLETLE--SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP  361 (694)
Q Consensus       285 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  361 (694)
                      +++|++|++++|.+. .+++..+..+++|++|++++|.+.++.  +..+..+++|+.|++++|.++.+.+..+.   .++
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~  400 (606)
T 3t6q_A          324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK---ECP  400 (606)
T ss_dssp             CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT---TCT
T ss_pred             cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc---CCc
Confidence            555555555555444 233333445555555555555554443  33344455555555555555444444443   445


Q ss_pred             CCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcC
Q psy3329         362 DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQ  441 (694)
Q Consensus       362 ~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  441 (694)
                      +|+.|++++|+++....           .                 ..+..   +++|+.|++++|.+++.++..+  ..
T Consensus       401 ~L~~L~l~~n~l~~~~~-----------~-----------------~~~~~---l~~L~~L~l~~n~l~~~~~~~~--~~  447 (606)
T 3t6q_A          401 QLELLDLAFTRLKVKDA-----------Q-----------------SPFQN---LHLLKVLNLSHSLLDISSEQLF--DG  447 (606)
T ss_dssp             TCSEEECTTCCEECCTT-----------C-----------------CTTTT---CTTCCEEECTTCCCBTTCTTTT--TT
T ss_pred             cCCeEECCCCcCCCccc-----------c-----------------hhhhC---cccCCEEECCCCccCCcCHHHH--hC
Confidence            55555555554432211           0                 01222   7888888888888888888777  78


Q ss_pred             CCCccEEEccCCcCCcc---CCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCC
Q psy3329         442 LSRLRSLDLSRCKIDYL---PPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNR  518 (694)
Q Consensus       442 l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~  518 (694)
                      +++|+.|++++|.+++.   .+..+..+++|+.|++++|++++..|..|   ..+++|+.|+|++|++++.+|..+..++
T Consensus       448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  524 (606)
T 3t6q_A          448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF---TSLKMMNHVDLSHNRLTSSSIEALSHLK  524 (606)
T ss_dssp             CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred             CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh---ccccCCCEEECCCCccCcCChhHhCccc
Confidence            88888888888888772   23557788888888888888888888777   7888888888888888888888888888


Q ss_pred             cccEEEccCCcccc
Q psy3329         519 AITSIKLVGNPWKC  532 (694)
Q Consensus       519 ~l~~l~l~~N~~~c  532 (694)
                      .| .+++++|.+..
T Consensus       525 ~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          525 GI-YLNLASNHISI  537 (606)
T ss_dssp             SC-EEECCSSCCCC
T ss_pred             cc-EEECcCCcccc
Confidence            88 88888888873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-49  Score=438.62  Aligned_cols=477  Identities=23%  Similarity=0.316  Sum_probs=388.7

Q ss_pred             CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329          17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML   95 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L   95 (694)
                      +++++|++++|.++.++ ..|..+++|++|++++|.++.+.+.+|.++++|++|++++|.++.+++..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57889999999998876 67888999999999999888888888899999999999999998888888899999999999


Q ss_pred             CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCC----cEEeCCC
Q psy3329          96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL----RNLNLAE  171 (694)
Q Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L----~~L~l~~  171 (694)
                      ++|.++.+.+..++++++|++|++++|.+..+ .+|..++++++|++|++++|.++.+++..++.+++|    +.|++++
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             cccccccCCCccccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            99998888776788899999999999988742 345678888999999999999888887777777777    7889999


Q ss_pred             CCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcE--------------------------------EE
Q psy3329         172 NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRT--------------------------------LY  219 (694)
Q Consensus       172 n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~--------------------------------L~  219 (694)
                      |.+..+....+.   ..+|+.|++++|..........+..+++++.                                ++
T Consensus       187 n~l~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          187 NPMNFIQPGAFK---EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             CCCCEECTTTTT---TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCceecCHHHhc---cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            988876554442   3378888888774322222223334444433                                33


Q ss_pred             cCCC-CCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCC
Q psy3329         220 LSGN-PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL  298 (694)
Q Consensus       220 L~~n-~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  298 (694)
                      +.++ .+... ....+..+++|+.|++++|.++.++ ..+..+ +|+.|++++|.+... |.  ..+++|++|++++|.+
T Consensus       264 l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~  337 (570)
T 2z63_A          264 LAYLDYYLDD-IIDLFNCLTNVSSFSLVSVTIERVK-DFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKG  337 (570)
T ss_dssp             EEETTEEESC-STTTTGGGTTCSEEEEESCEECSCC-BCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBS
T ss_pred             hhcchhhhhh-chhhhcCcCcccEEEecCccchhhh-hhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcc
Confidence            3332 11111 1223567789999999999998877 456666 999999999998743 32  4678999999999988


Q ss_pred             cccChhhhcCCCCCcEEeccCCcccCcC--chhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCC
Q psy3329         299 QRISRSTFLKMTSLKTLILSGNKLETLE--SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL  376 (694)
Q Consensus       299 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  376 (694)
                      ....+.  ..+++|+.|++++|.++...  +..+..+++|+.|++++|.++.++.. +.   .+++|+.|++++|.+...
T Consensus       338 ~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~---~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          338 GNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL---GLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             CCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE---TCTTCCEEECTTSEEESC
T ss_pred             cccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc---ccCCCCEEEccCCccccc
Confidence            766543  68899999999999998775  66788999999999999999988776 55   789999999999988754


Q ss_pred             CCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCC
Q psy3329         377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID  456 (694)
Q Consensus       377 ~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~  456 (694)
                      +..           ..                 +..   +++|+.|++++|.+.+..+..+  ..+++|+.|+|++|.++
T Consensus       412 ~~~-----------~~-----------------~~~---l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~  458 (570)
T 2z63_A          412 SEF-----------SV-----------------FLS---LRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQ  458 (570)
T ss_dssp             TTS-----------CT-----------------TTT---CTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEG
T ss_pred             cch-----------hh-----------------hhc---CCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCc
Confidence            320           00                 223   8999999999999999998888  89999999999999998


Q ss_pred             -ccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC
Q psy3329         457 -YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN  535 (694)
Q Consensus       457 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~  535 (694)
                       +..|..+..+++|+.|++++|++++..|..|   ..+++|++|++++|++++.++..+..+++|+.+++++|++.|+|+
T Consensus       459 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccchhhhhcccCCCEEECCCCccccCChhhh---hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence             4566789999999999999999999988888   889999999999999999999999999999999999999999999


Q ss_pred             cHHHH-HHHHh
Q psy3329         536 IADMW-EWATR  545 (694)
Q Consensus       536 ~~~~~-~~~~~  545 (694)
                      ..|+. .|+..
T Consensus       536 ~~~~~~~wl~~  546 (570)
T 2z63_A          536 RIDYLSRWLNK  546 (570)
T ss_dssp             TTHHHHHHHHH
T ss_pred             chHHHHHHHHh
Confidence            98887 99876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6e-49  Score=434.37  Aligned_cols=475  Identities=21%  Similarity=0.311  Sum_probs=348.7

Q ss_pred             CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329          17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML   95 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L   95 (694)
                      ++|++|++++|.++.++ ..|..+++|++|++++|.++++.+.+|..+++|++|++++|.++++++..|+++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            46777777777777664 56777777777777777777776677777777777777777777766666777777777777


Q ss_pred             CCCcCCcc-ChhhhcCCCCCCEEECCCCc-CCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCC
Q psy3329          96 NRCNLTYI-SPSAFDNLNHLKTLELSQNK-LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE  173 (694)
Q Consensus        96 ~~n~l~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~  173 (694)
                      ++|.++++ .+..++++++|++|++++|. +..+.  +..+.++++|++|++++|.+++..+..+..+++|++|+++.|.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            77777653 24566777777777777776 33211  1356667777777777777776666667777777777777776


Q ss_pred             CCCcchhhhcccCCCcccEEeCCCCCCCCCC--ChhhhhcCCCCcEEEcCCCCCCccchh---hhccCCCCccEEEccCc
Q psy3329         174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPL--SEDAFVNATKLRTLYLSGNPLSAADLS---VALKPLTKLHRLSLRNC  248 (694)
Q Consensus       174 l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n  248 (694)
                      +...+...  ...+++|++|++++|.+.+..  +......+++|+.|++++|.+++....   ..+..+++|+.+++++|
T Consensus       184 ~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          184 SAFLLEIF--ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             STTHHHHH--HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             ccccchhh--HhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            65433222  124677777777777764321  111233466777777777766544322   12355677888888888


Q ss_pred             CCCcCC------cccccCCCCccEEeCCCCCCcccc-----hhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEec
Q psy3329         249 GLSRLP------ANTFHRFTCLQELDISHNPLIDAF-----TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL  317 (694)
Q Consensus       249 ~i~~~~------~~~~~~~~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  317 (694)
                      .+.++.      ...+..+++|+.|.+.++.+....     +..+...++|+.|++++|.+..++...+.++++|+.|++
T Consensus       262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~L  341 (549)
T 2z81_A          262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL  341 (549)
T ss_dssp             EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEEC
T ss_pred             cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEc
Confidence            665432      123456778888888888765432     112233568999999999999888777778999999999


Q ss_pred             cCCcccCcCch---hhcCCCCCCEEeCCCCCCcccCc--cccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchh
Q psy3329         318 SGNKLETLESG---LFQNLTHLSVLELNNCGLTRLNE--TVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQI  392 (694)
Q Consensus       318 ~~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~  392 (694)
                      ++|.+.+..+.   .+..+++|+.|++++|+++.++.  ..+.   .+++|++|++++|+++.+|..             
T Consensus       342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---~l~~L~~L~Ls~N~l~~lp~~-------------  405 (549)
T 2z81_A          342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL---TLKNLTSLDISRNTFHPMPDS-------------  405 (549)
T ss_dssp             CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG---GCTTCCEEECTTCCCCCCCSC-------------
T ss_pred             cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh---cCCCCCEEECCCCCCccCChh-------------
Confidence            99999875432   36788999999999999998764  4455   789999999999999865531             


Q ss_pred             ccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEE
Q psy3329         393 WKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSL  472 (694)
Q Consensus       393 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  472 (694)
                                       +..   +++|+.|++++|.++.++...     .++|+.|+|++|+|++++    ..+++|++|
T Consensus       406 -----------------~~~---~~~L~~L~Ls~N~l~~l~~~~-----~~~L~~L~Ls~N~l~~~~----~~l~~L~~L  456 (549)
T 2z81_A          406 -----------------CQW---PEKMRFLNLSSTGIRVVKTCI-----PQTLEVLDVSNNNLDSFS----LFLPRLQEL  456 (549)
T ss_dssp             -----------------CCC---CTTCCEEECTTSCCSCCCTTS-----CTTCSEEECCSSCCSCCC----CCCTTCCEE
T ss_pred             -----------------hcc---cccccEEECCCCCcccccchh-----cCCceEEECCCCChhhhc----ccCChhcEE
Confidence                             112   789999999999998776532     368999999999999874    578999999


Q ss_pred             EccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         473 NLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       473 ~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      +|++|+++.+++  .   ..+++|+.|+|++|++++.+|..+..+++|+.+++++|+|.|+|+ ..|+..|...
T Consensus       457 ~Ls~N~l~~ip~--~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~  525 (549)
T 2z81_A          457 YISRNKLKTLPD--A---SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  525 (549)
T ss_dssp             ECCSSCCSSCCC--G---GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             ECCCCccCcCCC--c---ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHh
Confidence            999999996543  2   568999999999999999999999999999999999999999999 5788889876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.1e-48  Score=434.15  Aligned_cols=476  Identities=24%  Similarity=0.364  Sum_probs=320.9

Q ss_pred             CceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCC
Q psy3329          18 GLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN   96 (694)
Q Consensus        18 ~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~   96 (694)
                      ++++|+|++|.|+.++ .+|.++++|++|+|++|.++.+.+++|.++++|++|+|++|+++.+++..|.++++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            6777777777777776 567777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCC----CcEEeCCCC
Q psy3329          97 RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTW----LRNLNLAEN  172 (694)
Q Consensus        97 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~----L~~L~l~~n  172 (694)
                      +|.++++++..|+++++|++|++++|.+..+ ..+..++.+++|++|++++|.++.+.+..+..+.+    ...++++.|
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccC-CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            7777777666777777777777777777642 23456677777777777777777776665544333    335667777


Q ss_pred             CCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEc--------------------------------
Q psy3329         173 ELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL--------------------------------  220 (694)
Q Consensus       173 ~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L--------------------------------  220 (694)
                      .+..++...+   ....++.+++.+|.....+....+..++.++...+                                
T Consensus       212 ~l~~i~~~~~---~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~  288 (635)
T 4g8a_A          212 PMNFIQPGAF---KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  288 (635)
T ss_dssp             CCCEECTTTT---TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred             cccccCcccc---cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence            6655443322   22334445554443322222223333333333322                                


Q ss_pred             -------------------------CCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCc
Q psy3329         221 -------------------------SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI  275 (694)
Q Consensus       221 -------------------------~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~  275 (694)
                                               .++.+....   .+.....++.|++.+|.+..++..   .++.|+.+.+..|...
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~  362 (635)
T 4g8a_A          289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGG  362 (635)
T ss_dssp             ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSC
T ss_pred             hhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCC
Confidence                                     222111111   112233444444444444443321   2334445555554443


Q ss_pred             ccchhhcCCCCCCcEEECcCCCCcc--cChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCccc-Ccc
Q psy3329         276 DAFTALLSPLESLEHLDMGYSNLQR--ISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL-NET  352 (694)
Q Consensus       276 ~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~  352 (694)
                      ...  ....+++|+.|+++.|.+..  ..+..+..+.+|+.+++..+.+...... +..+++|+.+++..+..... +..
T Consensus       363 ~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~  439 (635)
T 4g8a_A          363 NAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS  439 (635)
T ss_dssp             CBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTSSC
T ss_pred             CCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhcccccccccc
Confidence            322  12345666677776666543  2334445566677777766665554432 55667777777776655443 233


Q ss_pred             ccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCC-cc
Q psy3329         353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL-HV  431 (694)
Q Consensus       353 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~  431 (694)
                      .|.   .+++++.++++.|.+.....                             ..+.+   ++.++.|++++|.+ .+
T Consensus       440 ~~~---~l~~l~~l~ls~n~l~~~~~-----------------------------~~~~~---~~~L~~L~Ls~N~~~~~  484 (635)
T 4g8a_A          440 VFL---SLRNLIYLDISHTHTRVAFN-----------------------------GIFNG---LSSLEVLKMAGNSFQEN  484 (635)
T ss_dssp             TTT---TCTTCCEEECTTSCCEECCT-----------------------------TTTTT---CTTCCEEECTTCEEGGG
T ss_pred             ccc---cccccccccccccccccccc-----------------------------ccccc---chhhhhhhhhhcccccc
Confidence            344   56677777777776654322                             11233   78999999999974 45


Q ss_pred             cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329         432 LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP  511 (694)
Q Consensus       432 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~  511 (694)
                      +.+..|  ..+++|++|+|++|+|+++++..|.++++|++|+|++|+|+++++..|   ..+++|++|||++|+|++++|
T Consensus       485 ~~~~~~--~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~---~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          485 FLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY---KCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             EECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG---TTCTTCCEEECTTSCCCBCCS
T ss_pred             cCchhh--hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH---hCCCCCCEEECCCCcCCCCCH
Confidence            677788  899999999999999999999999999999999999999999999888   889999999999999999999


Q ss_pred             hhhcCC-CcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329         512 TVLRHN-RAITSIKLVGNPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       512 ~~~~~~-~~l~~l~l~~N~~~c~c~~~~~~~~~~~~  546 (694)
                      ..+..+ ++|+.|++++|||.|||++.||..|++..
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~  595 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ  595 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHT
T ss_pred             HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhC
Confidence            999887 68999999999999999999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.3e-47  Score=428.82  Aligned_cols=459  Identities=24%  Similarity=0.249  Sum_probs=382.0

Q ss_pred             ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329          19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      .++++++++.++.+|..+.  +++++|++++|.++++.+..|.++++|++|++++|.++.+.+..|.++++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            4689999999999996553  89999999999999999989999999999999999999999999999999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEEeCCCCCCCCc
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP-DNVFANNTWLRNLNLAENELIDL  177 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~  177 (694)
                      .++++.|.+|+++++|++|++++|.+..+..  ..++++++|++|++++|.+..+. +..++++++|++|++++|.+++.
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            9999999999999999999999999986553  45899999999999999998744 67899999999999999999876


Q ss_pred             chhhhcccCCCc----ccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhh--------------------
Q psy3329         178 DVATTLGQNLVH----LDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVA--------------------  233 (694)
Q Consensus       178 ~~~~~~~~~~~~----L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--------------------  233 (694)
                      ....+.  .+.+    +.++++++|.+ ..++...+... +|+.|++++|.+........                    
T Consensus       169 ~~~~~~--~l~~L~~~l~~L~l~~n~l-~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  244 (606)
T 3vq2_A          169 TVNDLQ--FLRENPQVNLSLDMSLNPI-DFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE  244 (606)
T ss_dssp             CTTTTH--HHHHCTTCCCEEECTTCCC-CEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             Chhhhh--hhhccccccceeeccCCCc-ceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence            543332  3444    44899999999 55665556554 89999999987652111111                    


Q ss_pred             ------------------------------------ccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc
Q psy3329         234 ------------------------------------LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA  277 (694)
Q Consensus       234 ------------------------------------l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~  277 (694)
                                                          +..+++|+.|++++|.+..++  .+..+++|+.|++++|.+ +.
T Consensus       245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~  321 (606)
T 3vq2_A          245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQ  321 (606)
T ss_dssp             CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SS
T ss_pred             CcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-cc
Confidence                                                345577888888888887776  577788888888888888 55


Q ss_pred             chhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcC--chhhcCCCCCCEEeCCCCCCcccCccccc
Q psy3329         278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE--SGLFQNLTHLSVLELNNCGLTRLNETVFH  355 (694)
Q Consensus       278 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  355 (694)
                      +| .+ .+++|++|++++|......  .+..+++|+.|++++|.++++.  +..+..+++|+.|++++|.++.++ ..+.
T Consensus       322 lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~  396 (606)
T 3vq2_A          322 FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFM  396 (606)
T ss_dssp             CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCT
T ss_pred             cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhcc
Confidence            55 34 7888888888888543322  5668888888888888888764  566788888899999888888876 3344


Q ss_pred             cCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCC
Q psy3329         356 ENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTG  435 (694)
Q Consensus       356 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  435 (694)
                         .+++|+.|++++|++...+..           .                 .+..   +++|+.|++++|.+++..+.
T Consensus       397 ---~l~~L~~L~l~~n~l~~~~~~-----------~-----------------~~~~---l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          397 ---GLEELQHLDFQHSTLKRVTEF-----------S-----------------AFLS---LEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             ---TCTTCCEEECTTSEEESTTTT-----------T-----------------TTTT---CTTCCEEECTTSCCEECCTT
T ss_pred             ---CCCCCCeeECCCCccCCccCh-----------h-----------------hhhc---cccCCEEECcCCCCCccchh
Confidence               678888999988887654320           0                 0223   89999999999999999888


Q ss_pred             CCCCcCCCCccEEEccCCcCCc-cCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhh
Q psy3329         436 NLLPPQLSRLRSLDLSRCKIDY-LPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL  514 (694)
Q Consensus       436 ~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~  514 (694)
                      .+  ..+++|+.|++++|.+++ +++..|..+++|++|+|++|++++..|..|   ..+++|++|++++|++++.+|..+
T Consensus       443 ~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~  517 (606)
T 3vq2_A          443 IF--LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF---DTLHRLQLLNMSHNNLLFLDSSHY  517 (606)
T ss_dssp             TT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCSCEEGGGT
T ss_pred             hh--cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh---cccccCCEEECCCCcCCCcCHHHc
Confidence            88  899999999999999998 578889999999999999999999998888   889999999999999999999999


Q ss_pred             cCCCcccEEEccCCcccc
Q psy3329         515 RHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       515 ~~~~~l~~l~l~~N~~~c  532 (694)
                      ..+++|+.|++++|++..
T Consensus       518 ~~l~~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          518 NQLYSLSTLDCSFNRIET  535 (606)
T ss_dssp             TTCTTCCEEECTTSCCCC
T ss_pred             cCCCcCCEEECCCCcCcc
Confidence            999999999999999873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4e-48  Score=424.46  Aligned_cols=470  Identities=19%  Similarity=0.205  Sum_probs=385.2

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN   99 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~   99 (694)
                      +++++++|.++.+|..+.  ++|++|++++|.++++.+..|.++++|++|++++|+++++.+..|.++++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            579999999999996554  899999999999999988999999999999999999999988889999999999999999


Q ss_pred             CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCC--cEEeCCCCCC--C
Q psy3329         100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL--RNLNLAENEL--I  175 (694)
Q Consensus       100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L--~~L~l~~n~l--~  175 (694)
                      ++.+++.   .+++|++|++++|.++.+ .+|..++++++|++|++++|.+..   ..+..+++|  ++|++++|.+  .
T Consensus        81 l~~lp~~---~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           81 LVKISCH---PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCEEECC---CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             eeecCcc---ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            9987433   899999999999998853 345678999999999999999876   346777777  9999999988  4


Q ss_pred             CcchhhhcccCCC-cccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCC-------CCccchhhhccCCCCccEEEccC
Q psy3329         176 DLDVATTLGQNLV-HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP-------LSAADLSVALKPLTKLHRLSLRN  247 (694)
Q Consensus       176 ~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~~l~~l~~L~~L~l~~  247 (694)
                      ......+.  .+. ....+++++|.+.+.++...+..+++|+.+++++|.       +.+...  .+..+++|+.|++++
T Consensus       154 ~~~~~~l~--~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          154 KEDPEGLQ--DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             SCCTTTTT--TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEE
T ss_pred             cccccccc--ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccc
Confidence            33222111  111 344678899988888887788899999999999986       333222  467889999999999


Q ss_pred             cCCCcCCcccc---cCCCCccEEeCCCCCCcccchhhc-----CCCCCCcEEECcCCCCcccChhhhcCC---CCCcEEe
Q psy3329         248 CGLSRLPANTF---HRFTCLQELDISHNPLIDAFTALL-----SPLESLEHLDMGYSNLQRISRSTFLKM---TSLKTLI  316 (694)
Q Consensus       248 n~i~~~~~~~~---~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~  316 (694)
                      |.+++.....+   ...++|+.|++++|.+.+.+|..+     ..+++|+.+++++|.+ .++...+..+   .+|+.|+
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence            87764221111   124689999999999998888877     8899999999999998 6664455444   6899999


Q ss_pred             ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcccc
Q psy3329         317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF  396 (694)
Q Consensus       317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~  396 (694)
                      +++|.+.....  +..+++|++|++++|.+++..+..+.   .+++|++|++++|+++.++         .+|..     
T Consensus       309 l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~l~---------~~~~~-----  369 (520)
T 2z7x_B          309 VSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCG---HLTELETLILQMNQLKELS---------KIAEM-----  369 (520)
T ss_dssp             EESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCC---CCSSCCEEECCSSCCCBHH---------HHHHH-----
T ss_pred             cCCCccccccc--hhhCCcccEEEeECCccChhhhhhhc---cCCCCCEEEccCCccCccc---------cchHH-----
Confidence            99999877652  26789999999999999996666665   7899999999999987432         22222     


Q ss_pred             chhhhhhhhcccccccCCCCCCCceEEcCCCCCcc-cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329         397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHV-LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA  475 (694)
Q Consensus       397 ~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  475 (694)
                                   +..   +++|+.|++++|.+++ ++...+  ..+++|+.|++++|.+++..+..+.  ++|+.|+++
T Consensus       370 -------------~~~---l~~L~~L~Ls~N~l~~~l~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls  429 (520)
T 2z7x_B          370 -------------TTQ---MKSLQQLDISQNSVSYDEKKGDC--SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH  429 (520)
T ss_dssp             -------------HTT---CTTCCEEECCSSCCBCCGGGCSC--CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred             -------------Hhh---CCCCCEEECCCCcCCcccccchh--ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence                         223   8999999999999998 776667  7899999999999999886665553  799999999


Q ss_pred             CCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHH-HHHHHhc
Q psy3329         476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM-WEWATRE  546 (694)
Q Consensus       476 ~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~-~~~~~~~  546 (694)
                      +|+++.+ |..+   ..+++|++|++++|+++++++..+..+++|+.+++++|++.|+|+..|+ ..|....
T Consensus       430 ~N~l~~i-p~~~---~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~  497 (520)
T 2z7x_B          430 SNKIKSI-PKQV---VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN  497 (520)
T ss_dssp             SSCCCCC-CGGG---GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred             CCccccc-chhh---hcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhc
Confidence            9999954 4444   6899999999999999987777788999999999999999999999999 9998763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.1e-47  Score=437.78  Aligned_cols=494  Identities=21%  Similarity=0.257  Sum_probs=396.8

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCC-CCccCCCCCCCCCCCCEEeCCCC
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP-LRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      +..++++++++.+|.   ..+++++|+|++|.++.+.+..|.++++|++|+|++|. +..+.+..|.++++|++|+|++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            578899999999997   56899999999999999999999999999999999995 45677888999999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCc-cccCCCCCCcEEeCCCCCCCCc
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD-NVFANNTWLRNLNLAENELIDL  177 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~  177 (694)
                      .+.++.|.+|.++++|++|++++|.+.....-...+.++++|++|++++|.+..+.+ ..|+++++|++|++++|.+...
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            999999999999999999999999998522212348899999999999999998765 5789999999999999998876


Q ss_pred             chhhhcccCC--CcccEEeCCCCCCCCCCChhhhhcCCC------CcEEEcCCCCCCccchhhhc--cCCCCccEEEccC
Q psy3329         178 DVATTLGQNL--VHLDSLDLSNCHLKGPLSEDAFVNATK------LRTLYLSGNPLSAADLSVAL--KPLTKLHRLSLRN  247 (694)
Q Consensus       178 ~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~------L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~l~~  247 (694)
                      ....+.  .+  ++|+.|++++|.+.+..+. .+..+++      |+.|++++|.++........  ...+.++.+.++.
T Consensus       164 ~~~~l~--~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          164 CEHELE--PLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CSGGGH--HHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             CHHHcc--cccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            444332  23  7899999999999766653 2444444      99999999987765443322  2236788888773


Q ss_pred             c---------CCCcCCcccccCC--CCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEe
Q psy3329         248 C---------GLSRLPANTFHRF--TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI  316 (694)
Q Consensus       248 n---------~i~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  316 (694)
                      +         .+.......|..+  ++|+.|++++|.+.+..+..+..+++|+.|+|++|.++.+.+..|.++++|+.|+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  320 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN  320 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence            3         3344444455554  7899999999999999899999999999999999999999999999999999999


Q ss_pred             ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcc-------ccccccccc
Q psy3329         317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDST-------KQYSMRTIP  389 (694)
Q Consensus       317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-------~~~~~~~ip  389 (694)
                      |++|.++++.+..|..+++|+.|++++|.++.+++..|.   .+++|+.|++++|.++.++...       ....+..+|
T Consensus       321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~---~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~  397 (844)
T 3j0a_A          321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK---FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP  397 (844)
T ss_dssp             EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC---SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred             CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc---CCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence            999999999888899999999999999999999888887   8999999999999998765411       111222333


Q ss_pred             chhccccchhhhhhhhccccccc------CCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCc-----c
Q psy3329         390 TQIWKNFDFLVILFILNETVFHE------NYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY-----L  458 (694)
Q Consensus       390 ~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~  458 (694)
                      .... .   +..+. +..+.+.+      ...+++|+.|++++|.+++.++.... ..+++|+.|+|++|.++.     .
T Consensus       398 ~~~~-~---l~~L~-ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~  471 (844)
T 3j0a_A          398 KINL-T---ANLIH-LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-SENPSLEQLFLGENMLQLAWETEL  471 (844)
T ss_dssp             CCCT-T---CCEEE-CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-CSCTTCCBCEEESCCCSSSCCSCC
T ss_pred             cccc-c---cceee-cccCccccCchhhhhhcCCccceeeCCCCccccccccccc-ccCCccccccCCCCcccccccccc
Confidence            2210 0   00000 00000100      01378999999999999887654322 568899999999999874     4


Q ss_pred             CCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccc
Q psy3329         459 PPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCD  533 (694)
Q Consensus       459 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~  533 (694)
                      .+..|.++++|+.|+|++|++++.++..|   ..+++|+.|+|++|+++++++..+.  ++|+.|++++|.+...
T Consensus       472 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVF---SHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP  541 (844)
T ss_dssp             CSSCSSCBCCEECCCCCHHHHTTCCTTSS---SSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC
T ss_pred             chhhhcCcccccEEECCCCcccccChhHc---cchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCC
Confidence            45678889999999999999999998888   8899999999999999998887665  7899999999998763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.8e-45  Score=404.03  Aligned_cols=477  Identities=19%  Similarity=0.175  Sum_probs=378.1

Q ss_pred             CCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEe
Q psy3329          15 DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM   94 (694)
Q Consensus        15 ~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~   94 (694)
                      .+...++++++++.++.+|..+.  ++|++|++++|.+.++.+..|.++++|++|++++|.++++.+..|.++++|++|+
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            34455899999999999996553  8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCC--cEEeCCCC
Q psy3329          95 LNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL--RNLNLAEN  172 (694)
Q Consensus        95 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L--~~L~l~~n  172 (694)
                      +++|.++.++..   .+++|++|++++|.+..+ ..|..++++++|++|++++|.+....   +..+++|  ++|++++|
T Consensus       107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l-~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVL-PVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CTTSCCCEECSC---CCTTCSEEECCSSCCSBC-CCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEES
T ss_pred             CCCCcCCccCcc---ccccCCEEECCCCCcccc-CchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecc
Confidence            999999987544   899999999999999853 33467899999999999999998754   4444555  99999999


Q ss_pred             CC--CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccc---hhhhccCCCCccEEEccC
Q psy3329         173 EL--IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAAD---LSVALKPLTKLHRLSLRN  247 (694)
Q Consensus       173 ~l--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~l~~  247 (694)
                      .+  .......+..-....+ .+++++|.+.+.++...+..+++|+.+++++|......   ....+..+++|+.+++.+
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            88  5433222211011122 56888898877777777888999999999998632111   112357788999999888


Q ss_pred             cCCCcCCcc---cccCCCCccEEeCCCCCCcccchhhc-----CCCCCCcEEECcCCCCcccChhhhcC---CCCCcEEe
Q psy3329         248 CGLSRLPAN---TFHRFTCLQELDISHNPLIDAFTALL-----SPLESLEHLDMGYSNLQRISRSTFLK---MTSLKTLI  316 (694)
Q Consensus       248 n~i~~~~~~---~~~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~  316 (694)
                      +.+.+....   .....++|++|++++|.+.+.+|..+     ..++.|+.+++..+.+ .++...+..   ..+|+.|+
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEE
Confidence            876632110   11234589999999999998777766     6777777777777777 455333332   36799999


Q ss_pred             ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcccc
Q psy3329         317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF  396 (694)
Q Consensus       317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~  396 (694)
                      +++|.+.....  ...+++|++|++++|.+++..+..+.   .+++|+.|++++|+++.++.         +|..     
T Consensus       338 l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~---------~~~~-----  398 (562)
T 3a79_B          338 ISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCS---TLKRLQTLILQRNGLKNFFK---------VALM-----  398 (562)
T ss_dssp             EESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCC---SCSSCCEEECCSSCCCBTTH---------HHHT-----
T ss_pred             ccCCCcccccC--ccCCCCceEEECCCCccccchhhhhc---ccCCCCEEECCCCCcCCccc---------chhh-----
Confidence            99999876542  26789999999999999996666666   88999999999999975431         2211     


Q ss_pred             chhhhhhhhcccccccCCCCCCCceEEcCCCCCcc-cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329         397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHV-LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA  475 (694)
Q Consensus       397 ~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  475 (694)
                                   +..   +++|+.|++++|.+++ ++...+  ..+++|+.|++++|.+++..+..+.  ++|+.|+|+
T Consensus       399 -------------~~~---l~~L~~L~l~~N~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~  458 (562)
T 3a79_B          399 -------------TKN---MSSLETLDVSLNSLNSHAYDRTC--AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH  458 (562)
T ss_dssp             -------------TTT---CTTCCEEECTTSCCBSCCSSCCC--CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECC
T ss_pred             -------------hcC---CCCCCEEECCCCcCCCccChhhh--cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECC
Confidence                         223   8999999999999998 777767  8899999999999999886665443  799999999


Q ss_pred             CCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHH-HHHh
Q psy3329         476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWE-WATR  545 (694)
Q Consensus       476 ~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~-~~~~  545 (694)
                      +|+++.+++ .+   ..+++|+.|+|++|+++++++..+..+++|+.+++++|||.|+|+..|+.. |...
T Consensus       459 ~N~l~~ip~-~~---~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~  525 (562)
T 3a79_B          459 NNRIMSIPK-DV---THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK  525 (562)
T ss_dssp             SSCCCCCCT-TT---TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHH
T ss_pred             CCcCcccCh-hh---cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHh
Confidence            999996544 34   588999999999999998777778999999999999999999999999965 8765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.9e-44  Score=398.38  Aligned_cols=451  Identities=21%  Similarity=0.270  Sum_probs=374.5

Q ss_pred             cCcccCCCCCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCcc-CCCCCCC
Q psy3329           9 NDRRNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII-EPGVFDP   86 (694)
Q Consensus         9 ~~~~~~~~~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~   86 (694)
                      ....|.++++|++|++++|.++.++ +.|..+++|++|++++|.+.++.+..|.++++|++|++++|.++.+ .+..|++
T Consensus        42 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  121 (549)
T 2z81_A           42 GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN  121 (549)
T ss_dssp             CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred             ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence            3467899999999999999999887 7899999999999999999999998899999999999999999865 3456999


Q ss_pred             CCCCCEEeCCCCc-CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCc
Q psy3329          87 LTSLEYLMLNRCN-LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLR  165 (694)
Q Consensus        87 l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~  165 (694)
                      +++|++|++++|. +..+++..+.++++|++|++++|.+..  ..+..++.+++|++|++++|.+..++...+..+++|+
T Consensus       122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  199 (549)
T 2z81_A          122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR  199 (549)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE--ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred             cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc--cChhhhhccccCceEecccCcccccchhhHhhccccc
Confidence            9999999999998 666767889999999999999999985  3457789999999999999998887776667899999


Q ss_pred             EEeCCCCCCCCcchhh-hcccCCCcccEEeCCCCCCCCCCCh---hhhhcCCCCcEEEcCCCCCCccch-----hhhccC
Q psy3329         166 NLNLAENELIDLDVAT-TLGQNLVHLDSLDLSNCHLKGPLSE---DAFVNATKLRTLYLSGNPLSAADL-----SVALKP  236 (694)
Q Consensus       166 ~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~-----~~~l~~  236 (694)
                      +|++++|.+.+..... .....+++|+.|++++|.+.+..+.   ..+..+++|+.+++++|.+.+...     ...+..
T Consensus       200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  279 (549)
T 2z81_A          200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE  279 (549)
T ss_dssp             EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred             EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence            9999999998753211 1223678999999999987543322   124568899999999987654321     113466


Q ss_pred             CCCccEEEccCcCCCcCCc-----ccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccCh---hhhcC
Q psy3329         237 LTKLHRLSLRNCGLSRLPA-----NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR---STFLK  308 (694)
Q Consensus       237 l~~L~~L~l~~n~i~~~~~-----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~  308 (694)
                      +++|+.|.+.++.+.....     ..+...++|+.|++++|.+.......+..+++|++|++++|.+++..+   ..+..
T Consensus       280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  359 (549)
T 2z81_A          280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA  359 (549)
T ss_dssp             CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred             hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence            7899999999987765321     123345789999999999876555545679999999999999987553   33678


Q ss_pred             CCCCcEEeccCCcccCcCc--hhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccc
Q psy3329         309 MTSLKTLILSGNKLETLES--GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMR  386 (694)
Q Consensus       309 l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  386 (694)
                      +++|+.|++++|+++++++  ..+..+++|++|++++|+++.++....    .+++|++|++++|+++.++.        
T Consensus       360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~----~~~~L~~L~Ls~N~l~~l~~--------  427 (549)
T 2z81_A          360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ----WPEKMRFLNLSSTGIRVVKT--------  427 (549)
T ss_dssp             STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCC----CCTTCCEEECTTSCCSCCCT--------
T ss_pred             cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhc----ccccccEEECCCCCcccccc--------
Confidence            9999999999999998864  568899999999999999998876433    68999999999999876543        


Q ss_pred             cccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCC
Q psy3329         387 TIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT  466 (694)
Q Consensus       387 ~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  466 (694)
                          .+                       .++|+.|++++|.+++++      ..+++|++|+|++|+|+.++.  ...+
T Consensus       428 ----~~-----------------------~~~L~~L~Ls~N~l~~~~------~~l~~L~~L~Ls~N~l~~ip~--~~~l  472 (549)
T 2z81_A          428 ----CI-----------------------PQTLEVLDVSNNNLDSFS------LFLPRLQELYISRNKLKTLPD--ASLF  472 (549)
T ss_dssp             ----TS-----------------------CTTCSEEECCSSCCSCCC------CCCTTCCEEECCSSCCSSCCC--GGGC
T ss_pred             ----hh-----------------------cCCceEEECCCCChhhhc------ccCChhcEEECCCCccCcCCC--cccC
Confidence                11                       468999999999998864      468899999999999998876  3578


Q ss_pred             CCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329         467 RNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP  511 (694)
Q Consensus       467 ~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~  511 (694)
                      ++|+.|+|++|++++.+|..+   ..+++|+.|++++|.+++..|
T Consensus       473 ~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          473 PVLLVMKISRNQLKSVPDGIF---DRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TTCCEEECCSSCCCCCCTTGG---GGCTTCCEEECCSSCBCCCHH
T ss_pred             ccCCEEecCCCccCCcCHHHH---hcCcccCEEEecCCCccCCCc
Confidence            999999999999999999888   889999999999999998665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6e-44  Score=396.46  Aligned_cols=459  Identities=23%  Similarity=0.271  Sum_probs=379.9

Q ss_pred             CceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329          18 GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR   97 (694)
Q Consensus        18 ~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~   97 (694)
                      ..+.++.++..++.+|..+  .+++++|++++|.++.+.+.+|.++++|++|++++|.++.+++..|.++++|++|++++
T Consensus         8 ~~~~~~c~~~~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            8 PNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTTEEECCSSCCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCcEEEeCCCCccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            3467889999999999644  46899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEEeCCCCCCCC
Q psy3329          98 CNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP-DNVFANNTWLRNLNLAENELID  176 (694)
Q Consensus        98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~  176 (694)
                      |.++.+.+.+|.++++|++|++++|.+..++..  .++++++|++|++++|.+..+. +..++++++|++|++++|.+..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCc--cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            999999899999999999999999999876542  4889999999999999999854 6779999999999999999987


Q ss_pred             cchhhhcccCCCcc----cEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCC-------------
Q psy3329         177 LDVATTLGQNLVHL----DSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK-------------  239 (694)
Q Consensus       177 ~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~-------------  239 (694)
                      .....+.  .+.+|    +.+++++|.+. .+++..+... +|+.|++++|..........+..++.             
T Consensus       164 ~~~~~~~--~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          164 IYCTDLR--VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             ECGGGGH--HHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             ecHHHcc--chhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence            6543332  46666    89999999984 4445556555 89999999885443322222333333             


Q ss_pred             -------------------ccEEEccCc-CCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCc
Q psy3329         240 -------------------LHRLSLRNC-GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ  299 (694)
Q Consensus       240 -------------------L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  299 (694)
                                         ++.++++.+ .+.+..+..+..+++|+.|++++|.+.+ +|..+..+ +|++|++++|.+.
T Consensus       240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~  317 (570)
T 2z63_A          240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG  317 (570)
T ss_dssp             CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS
T ss_pred             chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc
Confidence                               344445444 4455555677888999999999998875 56667777 9999999999988


Q ss_pred             ccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccC--ccccccCCCCCCCCeeeCCCCCCcCCC
Q psy3329         300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN--ETVFHENYTYPDLEELRLSGNPLHVLP  377 (694)
Q Consensus       300 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~  377 (694)
                      .++.   ..+++|+.|++++|.+....+.  ..+++|+.|++++|.++.+.  +..+.   .+++|+.|++++|.+..++
T Consensus       318 ~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~  389 (570)
T 2z63_A          318 QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF---GTTSLKYLDLSFNGVITMS  389 (570)
T ss_dssp             SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH---TCSCCCEEECCSCSEEEEE
T ss_pred             ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc---ccCccCEEECCCCcccccc
Confidence            7664   4788999999999988766553  67899999999999998764  34444   7899999999999876433


Q ss_pred             CcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCC-CCCCCcCCCCccEEEccCCcCC
Q psy3329         378 DSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT-GNLLPPQLSRLRSLDLSRCKID  456 (694)
Q Consensus       378 ~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~l~~L~~L~Ls~n~l~  456 (694)
                      .            .                  +..   +++|+.|++++|.+++.++ ..+  ..+++|+.|++++|.++
T Consensus       390 ~------------~------------------~~~---l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          390 S------------N------------------FLG---LEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             E------------E------------------EET---CTTCCEEECTTSEEESCTTSCTT--TTCTTCCEEECTTSCCE
T ss_pred             c------------c------------------ccc---cCCCCEEEccCCccccccchhhh--hcCCCCCEEeCcCCccc
Confidence            2            1                  222   8999999999999998766 456  88999999999999999


Q ss_pred             ccCCCCCCCCCCCCEEEccCCccC-CCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329         457 YLPPNVFNNTRNITSLNLANNNLS-MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       457 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c  532 (694)
                      +..+..|.++++|++|++++|.++ +..|..+   ..+++|+.|++++|++++..|..+..+++|+.|++++|.+..
T Consensus       435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS  508 (570)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCC---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccchhhhhcCCcCcEEECcCCcCccccchhhh---hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence            999999999999999999999998 5677777   889999999999999999999999999999999999998865

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-42  Score=386.33  Aligned_cols=421  Identities=19%  Similarity=0.230  Sum_probs=247.4

Q ss_pred             CCceEEECcCCCCc-chhhhhhcCCCCcEEEccCCcCCcc---------------------------------Chhhc--
Q psy3329          17 PGLITINLNANPIQ-PVEGAFLVARSLLYLYMQECTLSKI---------------------------------NPQFF--   60 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~-~i~~~~~~~~~L~~L~l~~n~l~~~---------------------------------~~~~~--   60 (694)
                      .+++.|+|+++.+. .+|..+..+++|++|+|++|.+...                                 .+..+  
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            58999999999998 7889999999999999999965100                                 00000  


Q ss_pred             -----------------cCCCCCCeEECC--CCCCCccCCCCCCCCCCCCEEeCCCCcCCcc-----------------C
Q psy3329          61 -----------------TNLTTLNKLDLS--GNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI-----------------S  104 (694)
Q Consensus        61 -----------------~~l~~L~~L~Ls--~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~  104 (694)
                                       .....++.+.+.  .|.++++ |..|+++++|++|+|++|.+++.                 .
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccC-CHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                             011122333332  4667774 55588888888888888888883                 5


Q ss_pred             hhhhc--CCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC-CCC-CCccccCCC------CCCcEEeCCCCCC
Q psy3329         105 PSAFD--NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG-ISN-LPDNVFANN------TWLRNLNLAENEL  174 (694)
Q Consensus       105 ~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~~------~~L~~L~l~~n~l  174 (694)
                      |..++  ++++|++|++++|.+..  .+|..++++++|++|++++|. +++ ..+..+..+      ++|++|++++|.+
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             chhhhhcccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            77777  88888888888888763  566778888888888888887 765 333444443      7777777777776


Q ss_pred             CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCC-ccEEEccCcCCCcC
Q psy3329         175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK-LHRLSLRNCGLSRL  253 (694)
Q Consensus       175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~-L~~L~l~~n~i~~~  253 (694)
                      +.++....+. .+++|+.|++++|.+.|.+|  .+..+++|+.|++++|.++..+  ..+..+++ |+.|++++|.++.+
T Consensus       318 ~~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~~L~~L~Ls~N~l~~l  392 (636)
T 4eco_A          318 KTFPVETSLQ-KMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIP--ANFCGFTEQVENLSFAHNKLKYI  392 (636)
T ss_dssp             SSCCCHHHHT-TCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECC--TTSEEECTTCCEEECCSSCCSSC
T ss_pred             CccCchhhhc-cCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCcccccc--HhhhhhcccCcEEEccCCcCccc
Confidence            6432210121 45555555555555544454  3445555555555555444221  12344444 55555555544443


Q ss_pred             CcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhc-------CCCCCcEEeccCCcccCcC
Q psy3329         254 PANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL-------KMTSLKTLILSGNKLETLE  326 (694)
Q Consensus       254 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~  326 (694)
                      + ..+...+                      +++|++|++++|.+++..+..+.       .+++|+.|+|++|.++.++
T Consensus       393 p-~~~~~~~----------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp  449 (636)
T 4eco_A          393 P-NIFDAKS----------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP  449 (636)
T ss_dssp             C-SCCCTTC----------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC
T ss_pred             c-hhhhhcc----------------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC
Confidence            3 2222222                      11444444444444444443343       4455666666666666555


Q ss_pred             chhhcCCCCCCEEeCCCCCCcccCccccccC----CCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhh
Q psy3329         327 SGLFQNLTHLSVLELNNCGLTRLNETVFHEN----YTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL  402 (694)
Q Consensus       327 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~  402 (694)
                      ...+..+++|+.|++++|.++.++...+...    ..+++|+.|++++|+++.++.            .+          
T Consensus       450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~------------~~----------  507 (636)
T 4eco_A          450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD------------DF----------  507 (636)
T ss_dssp             THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG------------GG----------
T ss_pred             HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh------------hh----------
Confidence            5555556666666666666665555444310    012256666666666553332            11          


Q ss_pred             hhhccccc-ccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEc------cCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329         403 FILNETVF-HENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDL------SRCKIDYLPPNVFNNTRNITSLNLA  475 (694)
Q Consensus       403 ~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~  475 (694)
                             + ..   +++|+.|++++|.++++ |..+  ..+++|+.|+|      ++|++.+..|..+..+++|++|+|+
T Consensus       508 -------~~~~---l~~L~~L~Ls~N~l~~i-p~~~--~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          508 -------RATT---LPYLVGIDLSYNSFSKF-PTQP--LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             -------STTT---CTTCCEEECCSSCCSSC-CCGG--GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             -------hhcc---CCCcCEEECCCCCCCCc-Chhh--hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence                   0 01   56666677777666663 3334  56677777777      3455666666666666667777777


Q ss_pred             CCccCCCcchhhhhhcccCCCcEEECCCCccccc
Q psy3329         476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI  509 (694)
Q Consensus       476 ~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~  509 (694)
                      +|+++ .+|..+   .  ++|+.|+|++|++..+
T Consensus       575 ~N~l~-~ip~~~---~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          575 SNDIR-KVNEKI---T--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SSCCC-BCCSCC---C--TTCCEEECCSCTTCEE
T ss_pred             CCcCC-ccCHhH---h--CcCCEEECcCCCCccc
Confidence            77663 334333   2  5666677776665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.4e-42  Score=388.14  Aligned_cols=448  Identities=18%  Similarity=0.214  Sum_probs=322.5

Q ss_pred             CCceEEECcCCCCc-chhhhhhcCCCCcEEEc-cCCcCCccChhh-----------------------------------
Q psy3329          17 PGLITINLNANPIQ-PVEGAFLVARSLLYLYM-QECTLSKINPQF-----------------------------------   59 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~-~i~~~~~~~~~L~~L~l-~~n~l~~~~~~~-----------------------------------   59 (694)
                      .+++.|+|+++.+. .+|..+..+++|++|+| ++|.+.+..+-.                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            58999999999998 78899999999999999 777554431100                                   


Q ss_pred             ----------------ccCCCCCCeEECCC--CCCCccCCCCCCCCCCCCEEeCCCCcCCc-----------------cC
Q psy3329          60 ----------------FTNLTTLNKLDLSG--NPLRIIEPGVFDPLTSLEYLMLNRCNLTY-----------------IS  104 (694)
Q Consensus        60 ----------------~~~l~~L~~L~Ls~--n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~  104 (694)
                                      ......++.+.+..  |.++++ |..|+++++|++|+|++|.+++                 ..
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                            01122333344433  666665 4458888888888888888888                 24


Q ss_pred             hhhhc--CCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC-CCC-CCcc-------ccCCCCCCcEEeCCCCC
Q psy3329         105 PSAFD--NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG-ISN-LPDN-------VFANNTWLRNLNLAENE  173 (694)
Q Consensus       105 ~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~-------~~~~~~~L~~L~l~~n~  173 (694)
                      |..++  ++++|+.|++++|.+.  +.+|..++++++|+.|++++|. +++ ..+.       .+..+++|+.|++++|.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~--~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNM--TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTC--CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             ChhhhhccCCCCCEEECcCCCCC--ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            66766  8888888888888776  3556778888888888888887 765 2222       23455688888888888


Q ss_pred             CCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCC-ccEEEccCcCCCc
Q psy3329         174 LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK-LHRLSLRNCGLSR  252 (694)
Q Consensus       174 l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~-L~~L~l~~n~i~~  252 (694)
                      +..++....+. .+++|+.|++++|.+. .+|  .+..+++|+.|++++|.++..+  ..+..+++ |+.|++++|.++.
T Consensus       560 L~~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp--~~l~~l~~~L~~L~Ls~N~L~~  633 (876)
T 4ecn_A          560 LEEFPASASLQ-KMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIP--EDFCAFTDQVEGLGFSHNKLKY  633 (876)
T ss_dssp             CCBCCCHHHHT-TCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCC--TTSCEECTTCCEEECCSSCCCS
T ss_pred             CCccCChhhhh-cCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccccch--HHHhhccccCCEEECcCCCCCc
Confidence            88544311232 7888999999998885 777  5888899999999999888433  33577788 9999999999987


Q ss_pred             CCcccccCCC--CccEEeCCCCCCcccchhhc---C--CCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCc
Q psy3329         253 LPANTFHRFT--CLQELDISHNPLIDAFTALL---S--PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL  325 (694)
Q Consensus       253 ~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  325 (694)
                      ++ ..+..++  +|+.|++++|.+.+.+|...   .  .+++|+.|+|++|.++.++...+..+++|+.|+|++|.+..+
T Consensus       634 lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i  712 (876)
T 4ecn_A          634 IP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI  712 (876)
T ss_dssp             CC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred             Cc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence            76 4555554  49999999999988665322   2  345899999999999998888888999999999999999988


Q ss_pred             CchhhcCC-------CCCCEEeCCCCCCcccCcccc-ccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccc
Q psy3329         326 ESGLFQNL-------THLSVLELNNCGLTRLNETVF-HENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFD  397 (694)
Q Consensus       326 ~~~~l~~l-------~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~  397 (694)
                      +...+...       ++|+.|+|++|+++.++...+ .   .+++|+.|+|++|+++.+|.            .+     
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~---~l~~L~~L~Ls~N~L~~lp~------------~l-----  772 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT---TLPYLSNMDVSYNCFSSFPT------------QP-----  772 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT---TCTTCCEEECCSSCCSSCCC------------GG-----
T ss_pred             ChHHhccccccccccCCccEEECCCCCCccchHHhhhc---cCCCcCEEEeCCCCCCccch------------hh-----
Confidence            77665543       389999999999998776654 2   45666666666666654322            11     


Q ss_pred             hhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCC
Q psy3329         398 FLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN  477 (694)
Q Consensus       398 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  477 (694)
                                   ..   +++|+.|+|++|.                    ++++|++.+..|..|.++++|+.|+|++|
T Consensus       773 -------------~~---L~~L~~L~Ls~N~--------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          773 -------------LN---SSQLKAFGIRHQR--------------------DAEGNRILRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             -------------GG---CTTCCEEECCCCB--------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             -------------hc---CCCCCEEECCCCC--------------------CcccccccccChHHHhcCCCCCEEECCCC
Confidence                         11   5555666555542                    33457777777777778888888888888


Q ss_pred             ccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc--ccCc
Q psy3329         478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC--DCNI  536 (694)
Q Consensus       478 ~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c--~c~~  536 (694)
                      ++ +.+|..+   .  ++|+.|||++|++..+.+..+.....+..+.+.+|++.+  +|+.
T Consensus       817 ~L-~~Ip~~l---~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~  871 (876)
T 4ecn_A          817 DI-RKVDEKL---T--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA  871 (876)
T ss_dssp             CC-CBCCSCC---C--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred             CC-CccCHhh---c--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence            88 4445444   2  578888888888877665555444445556667777655  7764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-40  Score=358.08  Aligned_cols=396  Identities=21%  Similarity=0.311  Sum_probs=281.2

Q ss_pred             ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCC-ccCCCCCCCCCCCCEEeCCC
Q psy3329          19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR-IIEPGVFDPLTSLEYLMLNR   97 (694)
Q Consensus        19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~   97 (694)
                      -+.++.+++.++.+|.   -.++|++|++++|.++++.|..|.++++|++|++++|.+. .+++..|.++++|++|++++
T Consensus        12 ~~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           12 GYNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TTEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            3468899999999986   3478999999999999998999999999999999999987 67777899999999999999


Q ss_pred             CcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccc-cCCCCCCcEEeCCCCCCCC
Q psy3329          98 CNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNV-FANNTWLRNLNLAENELID  176 (694)
Q Consensus        98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l~~  176 (694)
                      |.++++.|..|.++++|++|++++|.++........+..+++|++|++++|.+..+.+.. +..+++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            999999899999999999999999998742121123778888888888888888775543 6666667777766666554


Q ss_pred             cchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcC--CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCC
Q psy3329         177 LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA--TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP  254 (694)
Q Consensus       177 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~  254 (694)
                      .....                           +..+  .+|+.|++++|.                         +..++
T Consensus       169 ~~~~~---------------------------l~~l~~~~L~~L~l~~n~-------------------------l~~~~  196 (455)
T 3v47_A          169 ICEED---------------------------LLNFQGKHFTLLRLSSIT-------------------------LQDMN  196 (455)
T ss_dssp             CCTTT---------------------------SGGGTTCEEEEEECTTCB-------------------------CTTCS
T ss_pred             cChhh---------------------------hhccccccccccccccCc-------------------------ccccc
Confidence            32211                           1111  233333333333                         33222


Q ss_pred             ccc--------ccCCCCccEEeCCCCCCcccchhhcCC---CCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCccc
Q psy3329         255 ANT--------FHRFTCLQELDISHNPLIDAFTALLSP---LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE  323 (694)
Q Consensus       255 ~~~--------~~~~~~L~~L~L~~n~~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  323 (694)
                      ...        +..+++|+.|++++|.+.+..+..+..   .++|+.|++++|.+....              +..+.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~  262 (455)
T 3v47_A          197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFK  262 (455)
T ss_dssp             TTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSC
T ss_pred             hhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhc
Confidence            111        223445566666666555544443322   144555555544332211              0011111


Q ss_pred             CcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhh
Q psy3329         324 TLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILF  403 (694)
Q Consensus       324 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~  403 (694)
                      ......+..+                         ..++|+.|++++|.++....           ..            
T Consensus       263 ~~~~~~~~~~-------------------------~~~~L~~L~l~~n~l~~~~~-----------~~------------  294 (455)
T 3v47_A          263 DPDNFTFKGL-------------------------EASGVKTCDLSKSKIFALLK-----------SV------------  294 (455)
T ss_dssp             CCCTTTTGGG-------------------------TTSCCCEEECCSSCCCEECT-----------TT------------
T ss_pred             cCcccccccc-------------------------cccCceEEEecCccccccch-----------hh------------
Confidence            1111111110                         12344555555554432211           00            


Q ss_pred             hhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCc
Q psy3329         404 ILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTS  483 (694)
Q Consensus       404 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  483 (694)
                            +..   +++|++|++++|.++++++..|  ..+++|+.|+|++|.++++++..|.++++|++|+|++|++++..
T Consensus       295 ------~~~---l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  363 (455)
T 3v47_A          295 ------FSH---FTDLEQLTLAQNEINKIDDNAF--WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG  363 (455)
T ss_dssp             ------TTT---CTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred             ------ccc---CCCCCEEECCCCcccccChhHh--cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence                  112   6778888888888888888888  88999999999999999999999999999999999999999998


Q ss_pred             chhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         484 ELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       484 ~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      |..|   ..+++|++|+|++|+++++++..+..+++|+.+++++|++.|+|+ ..|+..|...
T Consensus       364 ~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~  423 (455)
T 3v47_A          364 DQSF---LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  423 (455)
T ss_dssp             TTTT---TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             hhhc---cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHh
Confidence            8888   889999999999999999988888999999999999999999998 7889999876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.5e-42  Score=375.18  Aligned_cols=439  Identities=19%  Similarity=0.185  Sum_probs=356.8

Q ss_pred             CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329          17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML   95 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L   95 (694)
                      ++|++|++++|.++.++ ..|..+++|++|++++|.++++.|..|.++++|++|++++|+++.++..   .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence            79999999999999887 7899999999999999999999999999999999999999999988765   7999999999


Q ss_pred             CCCcCCcc-ChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCC--CEEEccCCCC--CCCCccccCCCC-CCcEEeC
Q psy3329          96 NRCNLTYI-SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL--DTLDLRQSGI--SNLPDNVFANNT-WLRNLNL  169 (694)
Q Consensus        96 ~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~~~-~L~~L~l  169 (694)
                      ++|.++++ .|..|+++++|++|++++|.+..     ..+..+++|  +.|++++|.+  ....+..+..+. ....+++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            99999985 57899999999999999999875     346677888  9999999999  666666666655 3446678


Q ss_pred             CCCCCCCcchhhhcccCCCcccEEeCCCCC-------CCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhc--cCCCCc
Q psy3329         170 AENELIDLDVATTLGQNLVHLDSLDLSNCH-------LKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVAL--KPLTKL  240 (694)
Q Consensus       170 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l--~~l~~L  240 (694)
                      ++|.+.+....... ..+++|+.+++++|.       +.+.++  .+..+++|+.|++++|.+.+.......  ...++|
T Consensus       173 ~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L  249 (520)
T 2z7x_B          173 PTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV  249 (520)
T ss_dssp             CSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred             ccCcchhhhhhhhh-hcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence            88877653222222 378999999999986       433333  578899999999999887654432211  124699


Q ss_pred             cEEEccCcCCCcCCcccc-----cCCCCccEEeCCCCCCcccchhhcCCC---CCCcEEECcCCCCcccChhhhcCCCCC
Q psy3329         241 HRLSLRNCGLSRLPANTF-----HRFTCLQELDISHNPLIDAFTALLSPL---ESLEHLDMGYSNLQRISRSTFLKMTSL  312 (694)
Q Consensus       241 ~~L~l~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L  312 (694)
                      +.|++++|.+++..+..+     ..+++|+.+++++|.+ ......+..+   .+|+.|++++|.+..+.  .+..+++|
T Consensus       250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L  326 (520)
T 2z7x_B          250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF  326 (520)
T ss_dssp             SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred             cEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence            999999999984444555     8899999999999988 3222333333   67999999999987665  23688999


Q ss_pred             cEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCc--cccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccc
Q psy3329         313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE--TVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT  390 (694)
Q Consensus       313 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~  390 (694)
                      ++|++++|++++..+..+..+++|+.|++++|++++++.  ..+.   .+++|++|++++|++..           .+|.
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~---~l~~L~~L~Ls~N~l~~-----------~l~~  392 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT---QMKSLQQLDISQNSVSY-----------DEKK  392 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT---TCTTCCEEECCSSCCBC-----------CGGG
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh---hCCCCCEEECCCCcCCc-----------cccc
Confidence            999999999999888889999999999999999997543  4455   78999999999999875           1222


Q ss_pred             hhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC
Q psy3329         391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT  470 (694)
Q Consensus       391 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  470 (694)
                      ..                 +..   +++|++|++++|.+++..+..+  .  ++|+.|+|++|+|+.+++..+ .+++|+
T Consensus       393 ~~-----------------~~~---l~~L~~L~Ls~N~l~~~~~~~l--~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~  447 (520)
T 2z7x_B          393 GD-----------------CSW---TKSLLSLNMSSNILTDTIFRCL--P--PRIKVLDLHSNKIKSIPKQVV-KLEALQ  447 (520)
T ss_dssp             CS-----------------CCC---CTTCCEEECCSSCCCGGGGGSC--C--TTCCEEECCSSCCCCCCGGGG-GCTTCC
T ss_pred             ch-----------------hcc---CccCCEEECcCCCCCcchhhhh--c--ccCCEEECCCCcccccchhhh-cCCCCC
Confidence            21                 223   7899999999999987766554  2  799999999999998877654 899999


Q ss_pred             EEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329         471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP  511 (694)
Q Consensus       471 ~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~  511 (694)
                      +|+|++|+++.+++..+   ..+++|+.|++++|.+++..+
T Consensus       448 ~L~L~~N~l~~l~~~~~---~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          448 ELNVASNQLKSVPDGIF---DRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             EEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCBCCCHH
T ss_pred             EEECCCCcCCccCHHHh---ccCCcccEEECcCCCCcccCC
Confidence            99999999998766656   889999999999999998543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.9e-42  Score=383.04  Aligned_cols=445  Identities=18%  Similarity=0.247  Sum_probs=303.4

Q ss_pred             CCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCC------C-----CCCCCEEeCCCCcCCccChhhh
Q psy3329          40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFD------P-----LTSLEYLMLNRCNLTYISPSAF  108 (694)
Q Consensus        40 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~------~-----l~~L~~L~L~~n~l~~~~~~~l  108 (694)
                      .+++.|+|+++.+.+..|.+++++++|++|+|++|.+.... ..++      .     +..|+ ++++++.+.+.++..+
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~  158 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF  158 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCC-ccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence            47899999999999888889999999999999999652111 0011      0     11222 3333333333222222


Q ss_pred             cC-------------------CCCCCEEECC--CCcCCccchhhhhhcCCCCCCEEEccCCCCCCC--------------
Q psy3329         109 DN-------------------LNHLKTLELS--QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL--------------  153 (694)
Q Consensus       109 ~~-------------------l~~L~~L~l~--~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------------  153 (694)
                      ..                   ...++.+.+.  .|.++.   +|..++++++|++|++++|.+++.              
T Consensus       159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~---ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc---CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence            10                   0111111111  233331   344455555555555555555541              


Q ss_pred             ---CccccC--CCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCC-CCC-CCChhhhhc------CCCCcEEEc
Q psy3329         154 ---PDNVFA--NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCH-LKG-PLSEDAFVN------ATKLRTLYL  220 (694)
Q Consensus       154 ---~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~~------~~~L~~L~L  220 (694)
                         .+..+.  ++++|++|++++|.+.+... ..+. .+++|++|++++|. +.+ .+|. .+..      +++|+.|++
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~-~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L  312 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLK-ALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYI  312 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTT-TCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEEC
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccCh-HHHh-cCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEEC
Confidence               222344  55555555555555443211 1111 45556666666655 544 3443 2333      377888888


Q ss_pred             CCCCCCccchhhhccCCCCccEEEccCcCCC-cCCcccccCCCCccEEeCCCCCCcccchhhcCCCCC-CcEEECcCCCC
Q psy3329         221 SGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANTFHRFTCLQELDISHNPLIDAFTALLSPLES-LEHLDMGYSNL  298 (694)
Q Consensus       221 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l  298 (694)
                      ++|.++.++....+..+++|+.|++++|.++ .++  .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+
T Consensus       313 ~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             CSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred             CCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence            8887774432124577788888888888888 555  6778888888999888887 56667888888 99999999998


Q ss_pred             cccChhhhcCC--CCCcEEeccCCcccCcCchhhc-------CCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCC
Q psy3329         299 QRISRSTFLKM--TSLKTLILSGNKLETLESGLFQ-------NLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS  369 (694)
Q Consensus       299 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls  369 (694)
                      +.++ ..+..+  ++|+.|++++|.+.+..+..+.       .+++|+.|++++|.++.++...+.   .+++|+.|+++
T Consensus       390 ~~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~---~l~~L~~L~Ls  465 (636)
T 4eco_A          390 KYIP-NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS---TGSPLSSINLM  465 (636)
T ss_dssp             SSCC-SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH---TTCCCSEEECC
T ss_pred             cccc-hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc---cCCCCCEEECC
Confidence            8665 455554  4899999999999998877777       788999999999999999988887   78999999999


Q ss_pred             CCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEE
Q psy3329         370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLD  449 (694)
Q Consensus       370 ~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  449 (694)
                      +|+++.++.......    +.                  .+.   .+++|+.|++++|.++.++.. +....+++|+.|+
T Consensus       466 ~N~l~~i~~~~~~~~----~~------------------~~~---~l~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~  519 (636)
T 4eco_A          466 GNMLTEIPKNSLKDE----NE------------------NFK---NTYLLTSIDLRFNKLTKLSDD-FRATTLPYLVGID  519 (636)
T ss_dssp             SSCCSBCCSSSSEET----TE------------------ECT---TGGGCCEEECCSSCCCBCCGG-GSTTTCTTCCEEE
T ss_pred             CCCCCCcCHHHhccc----cc------------------ccc---ccCCccEEECcCCcCCccChh-hhhccCCCcCEEE
Confidence            999986654211000    00                  000   144899999999999976643 3112789999999


Q ss_pred             ccCCcCCccCCCCCCCCCCCCEEEc------cCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEE
Q psy3329         450 LSRCKIDYLPPNVFNNTRNITSLNL------ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSI  523 (694)
Q Consensus       450 Ls~n~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l  523 (694)
                      |++|+|+++ |..+..+++|+.|+|      ++|++.+.+|..+   ..+++|+.|+|++|+++.+ |..+.  ++|+.|
T Consensus       520 Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L  592 (636)
T 4eco_A          520 LSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI---TLCPSLTQLQIGSNDIRKV-NEKIT--PNISVL  592 (636)
T ss_dssp             CCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG---GGCSSCCEEECCSSCCCBC-CSCCC--TTCCEE
T ss_pred             CCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHHH---hcCCCCCEEECCCCcCCcc-CHhHh--CcCCEE
Confidence            999999995 555788999999999      5688899999888   8899999999999999554 44443  799999


Q ss_pred             EccCCcccc
Q psy3329         524 KLVGNPWKC  532 (694)
Q Consensus       524 ~l~~N~~~c  532 (694)
                      ++++|++.|
T Consensus       593 ~Ls~N~l~~  601 (636)
T 4eco_A          593 DIKDNPNIS  601 (636)
T ss_dssp             ECCSCTTCE
T ss_pred             ECcCCCCcc
Confidence            999999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-40  Score=375.24  Aligned_cols=426  Identities=18%  Similarity=0.197  Sum_probs=249.5

Q ss_pred             CCCcEEEccCCcCCccChhhccCCCCCCeEEC-CCCCCCccCCCC-----------------------------------
Q psy3329          40 RSLLYLYMQECTLSKINPQFFTNLTTLNKLDL-SGNPLRIIEPGV-----------------------------------   83 (694)
Q Consensus        40 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L-s~n~~~~~~~~~-----------------------------------   83 (694)
                      .+++.|+|+++.+.+..|..++++++|++|+| ++|.+.+..+..                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57999999999999888899999999999999 778665432210                                   


Q ss_pred             ----------------CCCCCCCCEEeCCC--CcCCccChhhhcCCCCCCEEECCCCcCCcc---------------chh
Q psy3329          84 ----------------FDPLTSLEYLMLNR--CNLTYISPSAFDNLNHLKTLELSQNKLKSH---------------IDW  130 (694)
Q Consensus        84 ----------------~~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---------------~~~  130 (694)
                                      ......++.+.+..  |.++++ |..++++++|+.|+|++|.++..               +.+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                            01112233333332  566663 56677777777777777777630               025


Q ss_pred             hhhhc--CCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCC-CCCcchhhhcc------cCCCcccEEeCCCCCCC
Q psy3329         131 TLVLG--NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENE-LIDLDVATTLG------QNLVHLDSLDLSNCHLK  201 (694)
Q Consensus       131 ~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~------~~~~~L~~L~l~~n~~~  201 (694)
                      |..++  ++++|+.|+|++|.+.+..+..+.++++|+.|++++|. +++...+..++      ..+++|+.|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            55555  77777777777777666666667777777777777776 54311221111      12335666666666553


Q ss_pred             CCCCh-hhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCC-ccEEeCCCCCCcccch
Q psy3329         202 GPLSE-DAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC-LQELDISHNPLIDAFT  279 (694)
Q Consensus       202 ~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~-L~~L~L~~n~~~~~~~  279 (694)
                       .+|. ..+..+++|+.|++++|.++.++   .+..+++|+.|++++|.++.++ ..+..+++ |+.|++++|.+. .+|
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccch-HHHhhccccCCEEECcCCCCC-cCc
Confidence             4443 24555555555555555555222   3355555555555555555443 23444555 555555555554 333


Q ss_pred             hhcCCCCC--CcEEECcCCCCcccChhh---hc--CCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCcc
Q psy3329         280 ALLSPLES--LEHLDMGYSNLQRISRST---FL--KMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNET  352 (694)
Q Consensus       280 ~~~~~l~~--L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  352 (694)
                      ..+..++.  |+.|+|++|.+.+..+..   +.  .+++|+.|+|++|.+..++...+..+++|+.|+|++|.++.++..
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~  715 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN  715 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence            44433322  555555555554432211   11  223444455555544444444444444444444444444444433


Q ss_pred             ccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCccc
Q psy3329         353 VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL  432 (694)
Q Consensus       353 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  432 (694)
                      .+..   ..                           +  .                 ..   .+++|+.|+|++|.++.+
T Consensus       716 ~~~~---~~---------------------------~--~-----------------l~---nl~~L~~L~Ls~N~L~~l  743 (876)
T 4ecn_A          716 SLKP---KD---------------------------G--N-----------------YK---NTYLLTTIDLRFNKLTSL  743 (876)
T ss_dssp             SSSC---TT---------------------------S--C-----------------CT---TGGGCCEEECCSSCCCCC
T ss_pred             Hhcc---cc---------------------------c--c-----------------cc---ccCCccEEECCCCCCccc
Confidence            3320   00                           0  0                 00   033666677777766644


Q ss_pred             CCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccC------CccCCCcchhhhhhcccCCCcEEECCCCcc
Q psy3329         433 PTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN------NNLSMTSELSFQFLDVLLELESLDLSNNNL  506 (694)
Q Consensus       433 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~------N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l  506 (694)
                      +. .+....+++|+.|+|++|.|+++ |..+..+++|+.|+|++      |++.+.+|..+   ..+++|+.|+|++|++
T Consensus       744 p~-~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l---~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          744 SD-DFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI---TTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CG-GGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG---GGCSSCCEEECCSSCC
T ss_pred             hH-HhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHH---hcCCCCCEEECCCCCC
Confidence            43 22002567777777777777775 33456777777777765      88999999888   8899999999999999


Q ss_pred             cccChhhhcCCCcccEEEccCCcccc
Q psy3329         507 THISPTVLRHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       507 ~~~~~~~~~~~~~l~~l~l~~N~~~c  532 (694)
                       +.+|..+.  ++|+.|++++|++..
T Consensus       819 -~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          819 -RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             -CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             -CccCHhhc--CCCCEEECCCCCCCc
Confidence             54555443  699999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-38  Score=359.21  Aligned_cols=483  Identities=22%  Similarity=0.250  Sum_probs=332.1

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN   99 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~   99 (694)
                      .+.+.++.+++.||..+  .+++++|+|++|.|+.+.+.+|.++++|++|+|++|+++.+++++|.++++|++|+|++|+
T Consensus        34 ~~~~c~~~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             TEEECTTSCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CEEECCCCCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            46788888999999654  3589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCC-ccccCCCCCCcEEeCCCCCCCCcc
Q psy3329         100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP-DNVFANNTWLRNLNLAENELIDLD  178 (694)
Q Consensus       100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~  178 (694)
                      ++++++.+|.++++|++|++++|.++.+..  ..++++++|++|++++|.++.+. +..+..+++|++|++++|.++++.
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            999999999999999999999999986544  45899999999999999998764 467788999999999999998765


Q ss_pred             hhhhc--ccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCC------
Q psy3329         179 VATTL--GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL------  250 (694)
Q Consensus       179 ~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i------  250 (694)
                      ...+.  .........++++.|.+ ..++...+ ....++.+++.+|..........+..+..++...+..+..      
T Consensus       190 ~~~l~~L~~l~~~~~~~~ls~n~l-~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  267 (635)
T 4g8a_A          190 CTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  267 (635)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCC-CEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             cccccchhhhhhhhhhhhcccCcc-cccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence            44332  11122345788999988 44544433 3446778888887655333333344455555444322211      


Q ss_pred             CcCC---------------------------cccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccCh
Q psy3329         251 SRLP---------------------------ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISR  303 (694)
Q Consensus       251 ~~~~---------------------------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  303 (694)
                      ....                           ...+..+.+++.+.+.++.+.....  +....+++.|++.+|.+..+..
T Consensus       268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~  345 (635)
T 4g8a_A          268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT  345 (635)
T ss_dssp             SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCC
T ss_pred             ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCc
Confidence            0000                           0112233445555555554433322  3334556666666665554432


Q ss_pred             hhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccC--ccccccCCCCCCCCeeeCCCCCCcCCCCccc
Q psy3329         304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLN--ETVFHENYTYPDLEELRLSGNPLHVLPDSTK  381 (694)
Q Consensus       304 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  381 (694)
                         ..+..|+.+++.+|.+.....  ...+++|+.|+++.|.+....  ...+.   ...+|+.+++..+.+...+....
T Consensus       346 ---~~l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~---~~~~L~~L~~~~~~~~~~~~~~~  417 (635)
T 4g8a_A          346 ---LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDF---GTISLKYLDLSFNGVITMSSNFL  417 (635)
T ss_dssp             ---CBCTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSSCCBEEEECCHHHH---SCSCCCEEECCSCSEEEECSCCT
T ss_pred             ---ccchhhhhcccccccCCCCcc--cccccccccchhhccccccccccccchh---hhhhhhhhhcccccccccccccc
Confidence               223444455555544433322  233445555555555443311  11111   33444444444443322111000


Q ss_pred             -ccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcC-CccC
Q psy3329         382 -QYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKI-DYLP  459 (694)
Q Consensus       382 -~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~  459 (694)
                       ...+..+.      +.............|..   ++.++.++++.|.+.+..+..+  ..+++|+.|+|++|.+ .+++
T Consensus       418 ~l~~L~~l~------l~~~~~~~~~~~~~~~~---l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~  486 (635)
T 4g8a_A          418 GLEQLEHLD------FQHSNLKQMSEFSVFLS---LRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFL  486 (635)
T ss_dssp             TCTTCCEEE------CTTSEEESTTSSCTTTT---CTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEE
T ss_pred             ccccccchh------hhhcccccccccccccc---cccccccccccccccccccccc--ccchhhhhhhhhhcccccccC
Confidence             00000000      00000000001112333   8899999999999999999888  8899999999999974 4578


Q ss_pred             CCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329         460 PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       460 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c  532 (694)
                      +..|..+++|++|+|++|++++++|..|   .++++|++|+|++|+|+++++..+..+++|+.|++++|.+..
T Consensus       487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f---~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             chhhhhccccCEEECCCCccCCcChHHH---cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence            8889999999999999999999999988   899999999999999999999999999999999999999865

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.9e-40  Score=355.43  Aligned_cols=384  Identities=22%  Similarity=0.309  Sum_probs=305.3

Q ss_pred             CcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEE
Q psy3329         188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQEL  267 (694)
Q Consensus       188 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L  267 (694)
                      .+++.|++++|.+ ..++...|..+++|++|+|++|.++...+. .+..+++|+.|++++|.++.++...|..+++|+.|
T Consensus        32 ~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCcc-ceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            3556666666666 334445678888899999988888876544 45788999999999999999888888899999999


Q ss_pred             eCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCc
Q psy3329         268 DISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLT  347 (694)
Q Consensus       268 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  347 (694)
                      ++++|.+.+..+..+..+++|++|++++|.+..+.+..|.++++|++|+|++|.++.+++..+..+++|+.|++++|.++
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            99999999888888999999999999999999988888999999999999999999999888999999999999999999


Q ss_pred             ccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCC
Q psy3329         348 RLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGN  427 (694)
Q Consensus       348 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  427 (694)
                      .++...|.   .+++|+.|++++|++.           +.+|...                 +.    ..+|+.|++++|
T Consensus       190 ~~~~~~~~---~l~~L~~L~l~~~~~~-----------~~~~~~~-----------------~~----~~~L~~L~l~~n  234 (477)
T 2id5_A          190 AIRDYSFK---RLYRLKVLEISHWPYL-----------DTMTPNC-----------------LY----GLNLTSLSITHC  234 (477)
T ss_dssp             EECTTCSC---SCTTCCEEEEECCTTC-----------CEECTTT-----------------TT----TCCCSEEEEESS
T ss_pred             EeChhhcc---cCcccceeeCCCCccc-----------cccCccc-----------------cc----CccccEEECcCC
Confidence            98887777   7899999999998754           2233322                 11    458999999999


Q ss_pred             CCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCccc
Q psy3329         428 PLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLT  507 (694)
Q Consensus       428 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~  507 (694)
                      .++.++...+  ..+++|+.|+|++|.++++++..|.++++|+.|+|++|+++++.+..|   ..+++|+.|+|++|+++
T Consensus       235 ~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          235 NLTAVPYLAV--RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF---RGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             CCCSCCHHHH--TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB---TTCTTCCEEECCSSCCS
T ss_pred             cccccCHHHh--cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh---cCcccCCEEECCCCcCc
Confidence            9998887667  889999999999999999999999999999999999999999999888   88999999999999999


Q ss_pred             ccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCCCceeecCCCCccccccccC-----CCCceEEEeecccC
Q psy3329         508 HISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGASR-----KKKGLVCYFDIFTT  582 (694)
Q Consensus       508 ~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~c~~~~~~~  582 (694)
                      ++++..|..+++|+.+++++|||.|+|++.|+..|............|..|....|.....     ....+.|..+....
T Consensus       310 ~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~i~~  389 (477)
T 2id5_A          310 TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRD  389 (477)
T ss_dssp             CCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEEESC
T ss_pred             eeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEeccccccc
Confidence            9999999999999999999999999999999887754322222334444555554433321     12345665443221


Q ss_pred             CCCCCCCcccccccchhHHHHhhhcCCCCCcccCC
Q psy3329         583 PTRKRPGRELFASTNKTWARYVKEADCPSSKLFRP  617 (694)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (694)
                      .    .........|......|.+.|.|.+.+.|.
T Consensus       390 ~----~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~  420 (477)
T 2id5_A          390 R----KAQQVFVDEGHTVQFVCRADGDPPPAILWL  420 (477)
T ss_dssp             C----SCEEEEEETTCCEEECCCEEEESCCEEEEE
T ss_pred             c----ccccEEEeCCCeEEEEEeccccCCCEEEEE
Confidence            1    123334455666667777777777666553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.6e-39  Score=359.14  Aligned_cols=440  Identities=20%  Similarity=0.180  Sum_probs=348.5

Q ss_pred             CCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329          17 PGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML   95 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L   95 (694)
                      +++++|++++|.++.++ ..|..+++|++|++++|.++++.|.+|.++++|++|++++|.++.++..   .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEEC
Confidence            79999999999999988 7999999999999999999999999999999999999999999988765   7999999999


Q ss_pred             CCCcCCccC-hhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCC--CEEEccCCCC--CCCCccccCCCC-CCcEEeC
Q psy3329          96 NRCNLTYIS-PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKL--DTLDLRQSGI--SNLPDNVFANNT-WLRNLNL  169 (694)
Q Consensus        96 ~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~~~-~L~~L~l  169 (694)
                      ++|.++++. |..|+++++|++|++++|.+...     .+..+++|  ++|++++|.+  +...+..+..+. ..-.+++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            999999864 58899999999999999999752     34455666  9999999999  777776666654 1225677


Q ss_pred             CCCCCCCcchhhhcccCCCcccEEeCCCCCCCC-C--CChhhhhcCCCCcEEEcCCCCCCccchhhh--ccCCCCccEEE
Q psy3329         170 AENELIDLDVATTLGQNLVHLDSLDLSNCHLKG-P--LSEDAFVNATKLRTLYLSGNPLSAADLSVA--LKPLTKLHRLS  244 (694)
Q Consensus       170 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--l~~l~~L~~L~  244 (694)
                      +.|.+...... .....+++|+.+++++|.... .  .....+..+++|+.+++.++.+........  ....++|++|+
T Consensus       204 ~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~  282 (562)
T 3a79_B          204 HPNSLFSVQVN-MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN  282 (562)
T ss_dssp             CSSSCCCCCCE-EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred             cCccchhhhhh-hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence            88877653222 222378899999999985210 0  011347788999999999887765432211  12345999999


Q ss_pred             ccCcCCC-cCCcccc----cCCCCccEEeCCCCCCcccchhhcC---CCCCCcEEECcCCCCcccChhhhcCCCCCcEEe
Q psy3329         245 LRNCGLS-RLPANTF----HRFTCLQELDISHNPLIDAFTALLS---PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI  316 (694)
Q Consensus       245 l~~n~i~-~~~~~~~----~~~~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  316 (694)
                      +++|.++ .++...+    ..++.|+.+++..+.+ ......+.   ...+|++|++++|.+....  ....+++|++|+
T Consensus       283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  359 (562)
T 3a79_B          283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN  359 (562)
T ss_dssp             EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred             EeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence            9999998 4543332    6677777777777766 22212221   1257999999999987654  236889999999


Q ss_pred             ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCc--cccccCCCCCCCCeeeCCCCCCcC-CCCcccccccccccchhc
Q psy3329         317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNE--TVFHENYTYPDLEELRLSGNPLHV-LPDSTKQYSMRTIPTQIW  393 (694)
Q Consensus       317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~ip~~~~  393 (694)
                      +++|.+++..+..+..+++|+.|++++|++++++.  ..+.   .+++|+.|++++|+++. ++.            .. 
T Consensus       360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---~l~~L~~L~l~~N~l~~~~~~------------~~-  423 (562)
T 3a79_B          360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK---NMSSLETLDVSLNSLNSHAYD------------RT-  423 (562)
T ss_dssp             CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT---TCTTCCEEECTTSCCBSCCSS------------CC-
T ss_pred             CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc---CCCCCCEEECCCCcCCCccCh------------hh-
Confidence            99999999888889999999999999999998764  3455   78999999999999975 432            11 


Q ss_pred             cccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEE
Q psy3329         394 KNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLN  473 (694)
Q Consensus       394 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  473 (694)
                                      +.+   +++|+.|++++|.+++..+..+  .  ++|+.|+|++|+|+.+++..+ ++++|+.|+
T Consensus       424 ----------------~~~---l~~L~~L~l~~n~l~~~~~~~l--~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~  479 (562)
T 3a79_B          424 ----------------CAW---AESILVLNLSSNMLTGSVFRCL--P--PKVKVLDLHNNRIMSIPKDVT-HLQALQELN  479 (562)
T ss_dssp             ----------------CCC---CTTCCEEECCSSCCCGGGGSSC--C--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEE
T ss_pred             ----------------hcC---cccCCEEECCCCCCCcchhhhh--c--CcCCEEECCCCcCcccChhhc-CCCCCCEEE
Confidence                            233   7899999999999987666544  2  799999999999999888766 999999999


Q ss_pred             ccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh
Q psy3329         474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP  511 (694)
Q Consensus       474 L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~  511 (694)
                      |++|+++++++..+   ..+++|+.|++++|.+.+..+
T Consensus       480 L~~N~l~~l~~~~~---~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          480 VASNQLKSVPDGVF---DRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCSSCCCCCCTTST---TTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCCCCCCCHHHH---hcCCCCCEEEecCCCcCCCcc
Confidence            99999998766656   889999999999999998543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.8e-38  Score=338.51  Aligned_cols=407  Identities=22%  Similarity=0.234  Sum_probs=252.9

Q ss_pred             CCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCC-------------CeEECCCCCCCccC
Q psy3329          14 LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTL-------------NKLDLSGNPLRIIE   80 (694)
Q Consensus        14 ~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~~~~~~   80 (694)
                      ...++|++|++++|.+..+|..++++++|++|++++|.+.+..|..++.+++|             ++|++++|.+++++
T Consensus         8 ~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             cccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            35689999999999999999999999999999999999988888888888764             99999999999876


Q ss_pred             CCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCC
Q psy3329          81 PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN  160 (694)
Q Consensus        81 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  160 (694)
                      .  +  .++|++|++++|.++++ |.   .+++|+.|++++|.++.++.++      ++|++|++++|.+++++  .++.
T Consensus        88 ~--~--~~~L~~L~l~~n~l~~l-p~---~~~~L~~L~l~~n~l~~l~~~~------~~L~~L~L~~n~l~~lp--~~~~  151 (454)
T 1jl5_A           88 E--L--PPHLESLVASCNSLTEL-PE---LPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEKLP--ELQN  151 (454)
T ss_dssp             S--C--CTTCSEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCCCSCC------TTCCEEECCSSCCSSCC--CCTT
T ss_pred             C--C--cCCCCEEEccCCcCCcc-cc---ccCCCcEEECCCCccCcccCCC------CCCCEEECcCCCCCCCc--ccCC
Confidence            5  2  47899999999999986 43   2478999999999988654422      68999999999999877  4899


Q ss_pred             CCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCc
Q psy3329         161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL  240 (694)
Q Consensus       161 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L  240 (694)
                      +++|++|++++|.+++++.      ...+|++|++++|.+.+ ++  .+..+++|+.|++++|.++..+.     ..++|
T Consensus       152 l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L  217 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPD-----LPLSL  217 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCC-----CCTTC
T ss_pred             CCCCCEEECCCCcCcccCC------CcccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCC-----CcCcc
Confidence            9999999999999886532      34589999999998844 55  37888889999998888876431     23588


Q ss_pred             cEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCC
Q psy3329         241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN  320 (694)
Q Consensus       241 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  320 (694)
                      ++|++++|.++.++  .+..+++|+.|++++|.+.+.. .   .+++|++|++++|.+++++.    .+++|+.|++++|
T Consensus       218 ~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N  287 (454)
T 1jl5_A          218 ESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSEN  287 (454)
T ss_dssp             CEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             cEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccccCc----ccCcCCEEECcCC
Confidence            88888888888776  3778888888888888877632 2   24678888888888877653    2467888888888


Q ss_pred             cccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhh
Q psy3329         321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLV  400 (694)
Q Consensus       321 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~  400 (694)
                      .+++++.    ..++|+.|++++|.+++++.       ..++|+.|++++|+++.++..                     
T Consensus       288 ~l~~l~~----~~~~L~~L~l~~N~l~~i~~-------~~~~L~~L~Ls~N~l~~lp~~---------------------  335 (454)
T 1jl5_A          288 IFSGLSE----LPPNLYYLNASSNEIRSLCD-------LPPSLEELNVSNNKLIELPAL---------------------  335 (454)
T ss_dssp             CCSEESC----CCTTCCEEECCSSCCSEECC-------CCTTCCEEECCSSCCSCCCCC---------------------
T ss_pred             ccCcccC----cCCcCCEEECcCCcCCcccC-------CcCcCCEEECCCCcccccccc---------------------
Confidence            8777542    12678888888887776442       124778888888877654420                     


Q ss_pred             hhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccC--CCCCCCCCCCCEEEccCCc
Q psy3329         401 ILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP--PNVFNNTRNITSLNLANNN  478 (694)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~  478 (694)
                                     +++|+.|++++|.++.++.  .    +++|+.|++++|.+++++  |..+      .  +++.|+
T Consensus       336 ---------------~~~L~~L~L~~N~l~~lp~--~----l~~L~~L~L~~N~l~~l~~ip~~l------~--~L~~n~  386 (454)
T 1jl5_A          336 ---------------PPRLERLIASFNHLAEVPE--L----PQNLKQLHVEYNPLREFPDIPESV------E--DLRMNS  386 (454)
T ss_dssp             ---------------CTTCCEEECCSSCCSCCCC--C----CTTCCEEECCSSCCSSCCCCCTTC------C--EEECCC
T ss_pred             ---------------CCcCCEEECCCCccccccc--h----hhhccEEECCCCCCCcCCCChHHH------H--hhhhcc
Confidence                           5677778888887776554  2    467778888888777732  3222      2  234466


Q ss_pred             cCCCcchhhhhhcccCCCcEEECCCCcccc--cChhhhcCCCcccEEEccCCccccc
Q psy3329         479 LSMTSELSFQFLDVLLELESLDLSNNNLTH--ISPTVLRHNRAITSIKLVGNPWKCD  533 (694)
Q Consensus       479 l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~--~~~~~~~~~~~l~~l~l~~N~~~c~  533 (694)
                      +.+.+|.      .+++|+.|++++|++++  .+|.      +++.+.+.+|.+.|.
T Consensus       387 ~~~~i~~------~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~  431 (454)
T 1jl5_A          387 HLAEVPE------LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP  431 (454)
T ss_dssp             ---------------------------------------------------------
T ss_pred             ccccccc------ccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc
Confidence            6665553      24789999999999998  4443      455677788877664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.9e-37  Score=329.23  Aligned_cols=387  Identities=24%  Similarity=0.247  Sum_probs=179.0

Q ss_pred             cCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC-------------CEEeCCCCcCCccC
Q psy3329          38 VARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL-------------EYLMLNRCNLTYIS  104 (694)
Q Consensus        38 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~  104 (694)
                      ..++|++|++++|.+..+ |..++++++|++|++++|.+.+..|..++.+.+|             ++|++++|.+++++
T Consensus         9 ~~~~L~~L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccccchhhhcccCchhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            356788888888888444 6678888888888888888776666667777665             66666666666652


Q ss_pred             hhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcc
Q psy3329         105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLG  184 (694)
Q Consensus       105 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  184 (694)
                      .    -.++|+.|++++|.++.++.      .+++|++|++++|.+++++..    .++|++|++++|.+++++  . + 
T Consensus        88 ~----~~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~-~-  149 (454)
T 1jl5_A           88 E----LPPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--E-L-  149 (454)
T ss_dssp             S----CCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--C-C-
T ss_pred             C----CcCCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--c-c-
Confidence            2    12456666666666654221      125566666666666554421    145666666666655543  1 1 


Q ss_pred             cCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCc
Q psy3329         185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCL  264 (694)
Q Consensus       185 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L  264 (694)
                      ..+++|++|++++|.+. .+|.    ..++|++|++++|.++..+   .+..+++|+.|++++|.+++++..    .++|
T Consensus       150 ~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~l~---~~~~l~~L~~L~l~~N~l~~l~~~----~~~L  217 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKKLPDL----PLSL  217 (454)
T ss_dssp             TTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSCCCC----CTTC
T ss_pred             CCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCcCc---cccCCCCCCEEECCCCcCCcCCCC----cCcc
Confidence            15556666666666553 2332    1235566666666555432   235555666666666655554421    1355


Q ss_pred             cEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCC
Q psy3329         265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC  344 (694)
Q Consensus       265 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  344 (694)
                      +.|++++|.+.. +| .+..+++|++|++++|.+++++.    .+++|+.|++++|++++++.    .+++|+.|++++|
T Consensus       218 ~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N  287 (454)
T 1jl5_A          218 ESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSEN  287 (454)
T ss_dssp             CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             cEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCc----ccCcCCEEECcCC
Confidence            566666655552 33 25555556666666555555432    23555566666655555432    1255556666655


Q ss_pred             CCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEc
Q psy3329         345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRL  424 (694)
Q Consensus       345 ~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L  424 (694)
                      .+++++.       -.++|+.|++++|+++.++.             .                       .++|+.|++
T Consensus       288 ~l~~l~~-------~~~~L~~L~l~~N~l~~i~~-------------~-----------------------~~~L~~L~L  324 (454)
T 1jl5_A          288 IFSGLSE-------LPPNLYYLNASSNEIRSLCD-------------L-----------------------PPSLEELNV  324 (454)
T ss_dssp             CCSEESC-------CCTTCCEEECCSSCCSEECC-------------C-----------------------CTTCCEEEC
T ss_pred             ccCcccC-------cCCcCCEEECcCCcCCcccC-------------C-----------------------cCcCCEEEC
Confidence            5555432       12455555555555543221             0                       235566666


Q ss_pred             CCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCC--CcchhhhhhcccCCCcEEECC
Q psy3329         425 SGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSM--TSELSFQFLDVLLELESLDLS  502 (694)
Q Consensus       425 s~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~l~~L~~L~ls  502 (694)
                      ++|.+++++.      .+++|+.|++++|.+++++.    .+++|++|++++|++++  .+|..+   .      .  ++
T Consensus       325 s~N~l~~lp~------~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l---~------~--L~  383 (454)
T 1jl5_A          325 SNNKLIELPA------LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESV---E------D--LR  383 (454)
T ss_dssp             CSSCCSCCCC------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTC---C------E--EE
T ss_pred             CCCccccccc------cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHH---H------h--hh
Confidence            6666555332      23556666666666655444    24556666666666655  233222   1      1  12


Q ss_pred             CCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329         503 NNNLTHISPTVLRHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       503 ~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c  532 (694)
                      .|++.+.+|..   +++|+.+++++|++.+
T Consensus       384 ~n~~~~~i~~~---~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          384 MNSHLAEVPEL---PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             CCC---------------------------
T ss_pred             hcccccccccc---cCcCCEEECCCCcCCc
Confidence            34444444432   3789999999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.9e-36  Score=323.03  Aligned_cols=300  Identities=28%  Similarity=0.418  Sum_probs=163.0

Q ss_pred             CCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEE
Q psy3329          39 ARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLE  118 (694)
Q Consensus        39 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  118 (694)
                      +++++.|++.++.+..+.  .+..+++|++|++++|.++.+++  +..+++|++|++++|.+.+..+  +.++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            445666666666555542  25556666666666666665544  5566666666666666665533  56666666666


Q ss_pred             CCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCC
Q psy3329         119 LSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNC  198 (694)
Q Consensus       119 l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n  198 (694)
                      +++|.+.....    +.++++|++|++++|.+..++.  +..+++|++|++. +.+.....   + ..+++|+.|++++|
T Consensus       119 L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~---~-~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          119 LFNNQITDIDP----LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP---L-ANLTTLERLDISSN  187 (466)
T ss_dssp             CCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCGG---G-TTCTTCCEEECCSS
T ss_pred             CCCCCCCCChH----HcCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCchh---h-ccCCCCCEEECcCC
Confidence            66666554321    5556666666666666655432  5556666666654 22222211   1 14455555555555


Q ss_pred             CCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccc
Q psy3329         199 HLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAF  278 (694)
Q Consensus       199 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~  278 (694)
                      .+ ..++  .+..+++|+.|++++|.+.....   +..+++|+.|++++|.+++++  .+..+++|+.|++++|.+.+..
T Consensus       188 ~l-~~~~--~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~  259 (466)
T 1o6v_A          188 KV-SDIS--VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA  259 (466)
T ss_dssp             CC-CCCG--GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG
T ss_pred             cC-CCCh--hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccch
Confidence            54 2222  25556666666666666554432   244566666666666665543  3555566666666666655544


Q ss_pred             hhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCC
Q psy3329         279 TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY  358 (694)
Q Consensus       279 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  358 (694)
                      +  +..+++|++|++++|.++.+.+  +..+++|+.|++++|++.++.+  +..+++|+.|++++|+++++++  +.   
T Consensus       260 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~---  328 (466)
T 1o6v_A          260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS---  328 (466)
T ss_dssp             G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG---
T ss_pred             h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc---
Confidence            3  4555566666666665555543  5555566666666665555444  4555555555555555555433  22   


Q ss_pred             CCCCCCeeeCCCCCCc
Q psy3329         359 TYPDLEELRLSGNPLH  374 (694)
Q Consensus       359 ~~~~L~~L~Ls~n~l~  374 (694)
                      .+++|+.|++++|+++
T Consensus       329 ~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             GCTTCCEEECCSSCCC
T ss_pred             cCccCCEeECCCCccC
Confidence            3444444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.2e-36  Score=325.59  Aligned_cols=354  Identities=24%  Similarity=0.322  Sum_probs=306.1

Q ss_pred             CCceEEECcCCCCcch-hhhhhcCCCCcEEEccCCcCC-ccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEe
Q psy3329          17 PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLS-KINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM   94 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i-~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~   94 (694)
                      ++|++|+|++|.++.+ |..|..+++|++|++++|.+. .+.+..|.++++|++|++++|.++.+.+..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            7899999999999987 588999999999999999886 56678899999999999999999999888899999999999


Q ss_pred             CCCCcCCccChhh--hcCCCCCCEEECCCCcCCccchhhh-hhcCCCCCCEEEccCCCCCCCCccccCCC--CCCcEEeC
Q psy3329          95 LNRCNLTYISPSA--FDNLNHLKTLELSQNKLKSHIDWTL-VLGNLGKLDTLDLRQSGISNLPDNVFANN--TWLRNLNL  169 (694)
Q Consensus        95 L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~~--~~L~~L~l  169 (694)
                      +++|.+++..+..  +.++++|++|++++|.+.....  . .+.++++|++|++++|.+..+.+..+..+  .+|+.|++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC--CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCc--ccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            9999999854544  8999999999999999986432  3 37889999999999999999888777765  78999999


Q ss_pred             CCCCCCCcchhhhc------ccCCCcccEEeCCCCCCCCCCChhhhhc---CCCCcEEEcCCCCCCccchhh--------
Q psy3329         170 AENELIDLDVATTL------GQNLVHLDSLDLSNCHLKGPLSEDAFVN---ATKLRTLYLSGNPLSAADLSV--------  232 (694)
Q Consensus       170 ~~n~l~~~~~~~~~------~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~--------  232 (694)
                      ++|.+.........      ...+++|++|++++|.+.+..+.. +..   .++|+.|++++|.........        
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  266 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN  266 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeeccccccccccchhhhccCcc
Confidence            99998876543211      114578999999999986555433 333   389999999988654322110        


Q ss_pred             -hc--cCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCC
Q psy3329         233 -AL--KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKM  309 (694)
Q Consensus       233 -~l--~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  309 (694)
                       .+  ...++|+.|++++|.+.++.+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.++++.+..|.++
T Consensus       267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  346 (455)
T 3v47_A          267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL  346 (455)
T ss_dssp             TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred             cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence             01  123689999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCC
Q psy3329         310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL  376 (694)
Q Consensus       310 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  376 (694)
                      ++|++|+|++|+++++.+..|..+++|++|++++|+++.++...+.   .+++|+.|++++|+++..
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT---TCTTCCEEECCSSCBCCC
T ss_pred             ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc---cCCcccEEEccCCCcccC
Confidence            9999999999999999898999999999999999999999988877   889999999999999753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.9e-35  Score=318.40  Aligned_cols=347  Identities=24%  Similarity=0.357  Sum_probs=220.5

Q ss_pred             CCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCC
Q psy3329          62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD  141 (694)
Q Consensus        62 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  141 (694)
                      .+++|+.|+++++.+..++.  +..+++|++|++++|.++++.+  +.++++|++|++++|.+.....    +.++++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GTTCTTCC
T ss_pred             HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh----hcCCCCCC
Confidence            46788899999888887653  7788899999999998888854  8888899999998888875432    77888888


Q ss_pred             EEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcC
Q psy3329         142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS  221 (694)
Q Consensus       142 ~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  221 (694)
                      +|++++|.+..+++  +..+++|++|++++|.+.+++.                             +..+++|+.|+++
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----------------------------~~~l~~L~~L~l~  164 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA-----------------------------LSGLTSLQQLSFG  164 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG-----------------------------GTTCTTCSEEEEE
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh-----------------------------hccCCcccEeecC
Confidence            88888888887764  6777777777777776554321                             3344444444443


Q ss_pred             CCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCccc
Q psy3329         222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI  301 (694)
Q Consensus       222 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  301 (694)
                      + .+....   .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++.+
T Consensus       165 ~-~~~~~~---~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  236 (466)
T 1o6v_A          165 N-QVTDLK---PLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI  236 (466)
T ss_dssp             E-SCCCCG---GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             C-cccCch---hhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc
Confidence            2 222211   1344555555555555555443  24555566666666665555443  44455666666666666554


Q ss_pred             ChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCccc
Q psy3329         302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK  381 (694)
Q Consensus       302 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  381 (694)
                      .  .+..+++|+.|++++|.+.++.+  +..+++|+.|++++|.++++++  +.   .+++|+.|++++|+++.++.   
T Consensus       237 ~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~---~l~~L~~L~L~~n~l~~~~~---  304 (466)
T 1o6v_A          237 G--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA---GLTALTNLELNENQLEDISP---  304 (466)
T ss_dssp             G--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT---TCTTCSEEECCSSCCSCCGG---
T ss_pred             h--hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc---CCCccCeEEcCCCcccCchh---
Confidence            2  45566666666666666666554  5666666666666666666544  22   45666666666665543321   


Q ss_pred             ccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCC
Q psy3329         382 QYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN  461 (694)
Q Consensus       382 ~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  461 (694)
                                                  +..   +++|+.|++++|.++++++  +  ..+++|+.|++++|.+++++  
T Consensus       305 ----------------------------~~~---l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~~--  347 (466)
T 1o6v_A          305 ----------------------------ISN---LKNLTYLTLYFNNISDISP--V--SSLTKLQRLFFYNNKVSDVS--  347 (466)
T ss_dssp             ----------------------------GGG---CTTCSEEECCSSCCSCCGG--G--GGCTTCCEEECCSSCCCCCG--
T ss_pred             ----------------------------hcC---CCCCCEEECcCCcCCCchh--h--ccCccCCEeECCCCccCCch--
Confidence                                        111   5666666666666666554  3  55666777777777666652  


Q ss_pred             CCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCccccc
Q psy3329         462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI  509 (694)
Q Consensus       462 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~  509 (694)
                      .+..+++|+.|++++|++++..|  +   ..+++|+.|++++|.+++.
T Consensus       348 ~l~~l~~L~~L~l~~n~l~~~~~--~---~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          348 SLANLTNINWLSAGHNQISDLTP--L---ANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCGG--G---TTCTTCCEEECCCEEEECC
T ss_pred             hhccCCCCCEEeCCCCccCccch--h---hcCCCCCEEeccCCcccCC
Confidence            35666677777777777666655  3   5666666777776666664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.6e-35  Score=314.43  Aligned_cols=357  Identities=22%  Similarity=0.257  Sum_probs=194.3

Q ss_pred             hhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCC
Q psy3329          35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL  114 (694)
Q Consensus        35 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  114 (694)
                      .+..+++|++|++++|.++++ | .+..+++|++|++++|.+++++   ++.+++|++|++++|.++++.   ++++++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L  108 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKL  108 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcC
Confidence            344555666666666665554 2 3555666666666666655542   555566666666666655541   5555566


Q ss_pred             CEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEe
Q psy3329         115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD  194 (694)
Q Consensus       115 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  194 (694)
                      ++|++++|.++.+   +  ++++++|++|++++|.+++++   +..+++|++|++++|                      
T Consensus       109 ~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n----------------------  158 (457)
T 3bz5_A          109 TYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLN----------------------  158 (457)
T ss_dssp             CEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTC----------------------
T ss_pred             CEEECCCCcCCee---c--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCC----------------------
Confidence            6666666655532   1  455555555555555555542   444555555555554                      


Q ss_pred             CCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCC
Q psy3329         195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPL  274 (694)
Q Consensus       195 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~  274 (694)
                          ...+.++   +..+++|+.|++++|.++..+    +..+++|+.|++++|.+++++   +..+++|+.|++++|++
T Consensus       159 ----~~~~~~~---~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          159 ----KKITKLD---VTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             ----SCCCCCC---CTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCC
T ss_pred             ----Ccccccc---cccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcc
Confidence                3223331   344455555555555554432    244455555555555555542   44455555555555555


Q ss_pred             cccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCcccc
Q psy3329         275 IDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVF  354 (694)
Q Consensus       275 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  354 (694)
                      .+. |  +..+++|++|++++|.+++++   +..+++|+.|++++|              +|+.|++++|.+.+..+  +
T Consensus       225 ~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~  282 (457)
T 3bz5_A          225 TEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--A  282 (457)
T ss_dssp             SCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--C
T ss_pred             ccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--c
Confidence            552 2  445555555555555555543   233444555544433              23334444443322111  1


Q ss_pred             ccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCC
Q psy3329         355 HENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPT  434 (694)
Q Consensus       355 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  434 (694)
                      .   .+++|+.|++++|+..+           .+|... ..         +..-.+.+   +++|+.|++++|++++++ 
T Consensus       283 ~---~l~~L~~L~Ls~n~~l~-----------~l~~~~-~~---------L~~L~l~~---~~~L~~L~L~~N~l~~l~-  334 (457)
T 3bz5_A          283 E---GCRKIKELDVTHNTQLY-----------LLDCQA-AG---------ITELDLSQ---NPKLVYLYLNNTELTELD-  334 (457)
T ss_dssp             T---TCTTCCCCCCTTCTTCC-----------EEECTT-CC---------CSCCCCTT---CTTCCEEECTTCCCSCCC-
T ss_pred             c---ccccCCEEECCCCcccc-----------eeccCC-Cc---------ceEechhh---cccCCEEECCCCcccccc-
Confidence            1   34555555555554321           111100 00         00000112   678888999999998863 


Q ss_pred             CCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhh
Q psy3329         435 GNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV  513 (694)
Q Consensus       435 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~  513 (694)
                        +  ..+++|+.|++++|+|+++        +.|..|++++|.++|.        ..+..|..+++++|+++|.+|..
T Consensus       335 --l--~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~--------~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          335 --V--SHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE--------GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             --C--TTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE--------EEEEECCCBCCBTTBEEEECCTT
T ss_pred             --c--ccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec--------ceeeecCccccccCcEEEEcChh
Confidence              4  7788999999999988874        4567778888888875        23456788899999999976653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.7e-35  Score=314.24  Aligned_cols=266  Identities=21%  Similarity=0.234  Sum_probs=218.6

Q ss_pred             CcccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCC
Q psy3329          10 DRRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTS   89 (694)
Q Consensus        10 ~~~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~   89 (694)
                      ...+.++++|++|++++|.++.+| .+..+++|++|++++|.++++.   +..+++|++|++++|.+++++   ++.+++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~  107 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTK  107 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred             ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCc
Confidence            346778999999999999999997 6899999999999999999973   889999999999999999873   889999


Q ss_pred             CCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC-CCCCCccccCCCCCCcEEe
Q psy3329          90 LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG-ISNLPDNVFANNTWLRNLN  168 (694)
Q Consensus        90 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~L~  168 (694)
                      |++|++++|.++++ +  ++.+++|++|++++|.++.+     .++++++|++|++++|. +..+   .+..+++|++|+
T Consensus       108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-----~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~  176 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLD  176 (457)
T ss_dssp             CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-----CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEE
T ss_pred             CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-----ccccCCcCCEEECCCCCccccc---ccccCCcCCEEE
Confidence            99999999999997 3  88999999999999999864     27889999999999995 4444   378899999999


Q ss_pred             CCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCc
Q psy3329         169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC  248 (694)
Q Consensus       169 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  248 (694)
                      +++|.+++++    + ..+++|+.|++++|.+.+ +   .+..+++|+.|++++|++++.+    +..+++|+.|++++|
T Consensus       177 ls~n~l~~l~----l-~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          177 CSFNKITELD----V-SQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CCSSCCCCCC----C-TTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS
T ss_pred             CCCCccceec----c-ccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCC
Confidence            9999998865    2 278899999999999854 3   2778899999999999998854    578899999999999


Q ss_pred             CCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCc
Q psy3329         249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETL  325 (694)
Q Consensus       249 ~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  325 (694)
                      .+++++   +..+++|+.|+++.|              +|+.|++++|.+.+..+  +..+++|+.|++++|...+.
T Consensus       244 ~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~  301 (457)
T 3bz5_A          244 PLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL  301 (457)
T ss_dssp             CCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred             cCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence            999886   345667777777665              34556666665443332  45667777777777764433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.9e-35  Score=314.39  Aligned_cols=321  Identities=24%  Similarity=0.345  Sum_probs=227.3

Q ss_pred             ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329          19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      -+.++++++.++.+|..+  .+++++|++++|.++.+.+..|.++++|++|+|++|.++.+.+..|.++++|++|+|++|
T Consensus        13 ~~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            357899999999998644  468999999999999998889999999999999999999998888999999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcc
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD  178 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~  178 (694)
                      .++.+++..|.++++|++|++++|.+....  +..+.++++|++|++++|.+..+.+..|..+++|++|++++|.++.++
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            999988888899999999999999887543  356788899999999999888887777877777777777777665543


Q ss_pred             hhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCC-cCCccc
Q psy3329         179 VATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS-RLPANT  257 (694)
Q Consensus       179 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~  257 (694)
                      .                           ..+..+++|+.|++++|.+...... .+..+++|+.|++++|.+. .++.. 
T Consensus       169 ~---------------------------~~l~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~-  219 (477)
T 2id5_A          169 T---------------------------EALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPN-  219 (477)
T ss_dssp             H---------------------------HHHTTCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTT-
T ss_pred             h---------------------------hHhcccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCccccccCcc-
Confidence            3                           3344444555555555544443322 2344555555555554332 22222 


Q ss_pred             ccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCC
Q psy3329         258 FHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS  337 (694)
Q Consensus       258 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  337 (694)
                      .....+|+.|++++|.+.+..+..+..+++|++|+|++|.++.+.+..|.++++|+.|+|++|++.++.+..|..+++|+
T Consensus       220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  299 (477)
T 2id5_A          220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR  299 (477)
T ss_dssp             TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred             cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence            22233566666666666555555566666666666666666666666666666666666666666666666666666666


Q ss_pred             EEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcC
Q psy3329         338 VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHV  375 (694)
Q Consensus       338 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  375 (694)
                      .|++++|.++.++...|.   .+++|+.|++++|++..
T Consensus       300 ~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          300 VLNVSGNQLTTLEESVFH---SVGNLETLILDSNPLAC  334 (477)
T ss_dssp             EEECCSSCCSCCCGGGBS---CGGGCCEEECCSSCEEC
T ss_pred             EEECCCCcCceeCHhHcC---CCcccCEEEccCCCccC
Confidence            666666666666666655   56667777777776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.4e-34  Score=299.46  Aligned_cols=322  Identities=23%  Similarity=0.290  Sum_probs=247.9

Q ss_pred             CCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCc
Q psy3329         137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR  216 (694)
Q Consensus       137 l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  216 (694)
                      +++++.|+++++.+..++...+..+++|++|++++|.+.+                           ++...|..+++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~---------------------------~~~~~~~~l~~L~   96 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---------------------------IDTYAFAYAHTIQ   96 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE---------------------------ECTTTTTTCTTCC
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc---------------------------cChhhccCCCCcC
Confidence            4566677777666666666555556666666665555443                           2333466667777


Q ss_pred             EEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCC
Q psy3329         217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS  296 (694)
Q Consensus       217 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n  296 (694)
                      +|++++|.++..... .+..+++|++|++++|.++.++...|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        97 ~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A           97 KLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             EEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             EEECCCCCCCcCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence            777777776665443 3467777888888888888777766777888888888888888777777888888888888888


Q ss_pred             CCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCC
Q psy3329         297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL  376 (694)
Q Consensus       297 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  376 (694)
                      .++.+.   +..+++|+.|++++|.+..+.     ..++|+.|++++|.++.++..      ..++|+.|++++|.++..
T Consensus       176 ~l~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~~------~~~~L~~L~l~~n~l~~~  241 (390)
T 3o6n_A          176 RLTHVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGP------VNVELTILKLQHNNLTDT  241 (390)
T ss_dssp             CCSBCC---GGGCTTCSEEECCSSCCSEEE-----CCSSCSEEECCSSCCCEEECC------CCSSCCEEECCSSCCCCC
T ss_pred             cCCccc---cccccccceeecccccccccC-----CCCcceEEECCCCeeeecccc------ccccccEEECCCCCCccc
Confidence            887764   456788888888888877643     346889999999988877543      347899999999988753


Q ss_pred             CCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCC
Q psy3329         377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID  456 (694)
Q Consensus       377 ~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~  456 (694)
                      +.                               +..   +++|++|++++|.++++.+..+  ..+++|+.|+|++|+++
T Consensus       242 ~~-------------------------------l~~---l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~  285 (390)
T 3o6n_A          242 AW-------------------------------LLN---YPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRLV  285 (390)
T ss_dssp             GG-------------------------------GGG---CTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECCSSCCC
T ss_pred             HH-------------------------------HcC---CCCccEEECCCCcCCCcChhHc--cccccCCEEECCCCcCc
Confidence            21                               222   8899999999999999988888  88999999999999999


Q ss_pred             ccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCc
Q psy3329         457 YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNI  536 (694)
Q Consensus       457 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~  536 (694)
                      +++.. +..+++|++|+|++|+++++++ .+   ..+++|+.|++++|+++.+.   +..+++|+.+++++|+|.|+|..
T Consensus       286 ~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~---~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~  357 (390)
T 3o6n_A          286 ALNLY-GQPIPTLKVLDLSHNHLLHVER-NQ---PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR  357 (390)
T ss_dssp             EEECS-SSCCTTCCEEECCSSCCCCCGG-GH---HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             ccCcc-cCCCCCCCEEECCCCcceecCc-cc---cccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH
Confidence            97654 4789999999999999997654 34   77899999999999999875   56678999999999999999877


Q ss_pred             HHHHHHHH
Q psy3329         537 ADMWEWAT  544 (694)
Q Consensus       537 ~~~~~~~~  544 (694)
                      .++..|.+
T Consensus       358 ~~~~~~~~  365 (390)
T 3o6n_A          358 ALFRNVAR  365 (390)
T ss_dssp             HHTTTCCT
T ss_pred             HHHHHHHh
Confidence            66655543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-32  Score=284.69  Aligned_cols=305  Identities=24%  Similarity=0.344  Sum_probs=190.9

Q ss_pred             cCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329          38 VARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL  117 (694)
Q Consensus        38 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  117 (694)
                      .+++|++|+++++.+..+.  .+..+++|++|++++|.++.+++  +..+++|++|++++|.++.+  ..+.++++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             hcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            4455555555555554442  24455555555555555554433  45555555555555555554  235555555555


Q ss_pred             ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCC
Q psy3329         118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN  197 (694)
Q Consensus       118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~  197 (694)
                      ++++|.+.....    +..+++|+.|++++|......+ .+..+++|++|++++|.+.....   . ..+++|++|++++
T Consensus       116 ~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---~-~~l~~L~~L~l~~  186 (347)
T 4fmz_A          116 YLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP---I-ANLTDLYSLSLNY  186 (347)
T ss_dssp             ECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG---G-GGCTTCSEEECTT
T ss_pred             ECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh---h-ccCCCCCEEEccC
Confidence            555555543221    4455555555555553332222 15555556666666555554433   1 1456666666666


Q ss_pred             CCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc
Q psy3329         198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA  277 (694)
Q Consensus       198 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~  277 (694)
                      |.+ ..++.  +..+++|+.|++++|.+.....   +..+++|++|++++|.++.+++  +..+++|+.|++++|.+.+.
T Consensus       187 n~l-~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          187 NQI-EDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI  258 (347)
T ss_dssp             SCC-CCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             Ccc-ccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence            666 33332  6667777777777777766543   4667777778887777777664  67777888888888877664


Q ss_pred             chhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccC
Q psy3329         278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHEN  357 (694)
Q Consensus       278 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  357 (694)
                        ..+..+++|++|++++|.++.+.  .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++++++  +.  
T Consensus       259 --~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~--  330 (347)
T 4fmz_A          259 --NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA--  330 (347)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG--
T ss_pred             --hhHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh--
Confidence              34677788888888888887763  57778888888888888888777778888888888888888887665  33  


Q ss_pred             CCCCCCCeeeCCCCCCc
Q psy3329         358 YTYPDLEELRLSGNPLH  374 (694)
Q Consensus       358 ~~~~~L~~L~Ls~n~l~  374 (694)
                       .+++|+.|++++|+++
T Consensus       331 -~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          331 -SLSKMDSADFANQVIK  346 (347)
T ss_dssp             -GCTTCSEESSSCC---
T ss_pred             -hhhccceeehhhhccc
Confidence             6788888888888775

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7e-33  Score=291.53  Aligned_cols=310  Identities=23%  Similarity=0.288  Sum_probs=229.8

Q ss_pred             cCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329          38 VARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL  117 (694)
Q Consensus        38 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  117 (694)
                      .++++++|++++|.+..+++..|..+++|++|++++|.++.+++..|..+++|++|++++|.++++.+..|.++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            35667777777777777766666777777777777777777766667777777777777777777766667777777777


Q ss_pred             ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCC
Q psy3329         118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN  197 (694)
Q Consensus       118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~  197 (694)
                      ++++|.+..+..  ..+.++++|++|++++|.+..+++..+..+++|++|++++|.++..+..     .+++|+.|++++
T Consensus       123 ~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~L~~L~l~~  195 (390)
T 3o6n_A          123 VLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-----LIPSLFHANVSY  195 (390)
T ss_dssp             ECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGG-----GCTTCSEEECCS
T ss_pred             ECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccc-----cccccceeeccc
Confidence            777777664332  2356677777777777777777766677777777777777777665321     567777788777


Q ss_pred             CCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc
Q psy3329         198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA  277 (694)
Q Consensus       198 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~  277 (694)
                      |.+.+      +...++|+.|++++|.+...+.    ...++|+.|++++|.+++.+  .+..+++|+.|++++|.+.+.
T Consensus       196 n~l~~------~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~  263 (390)
T 3o6n_A          196 NLLST------LAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKI  263 (390)
T ss_dssp             SCCSE------EECCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEE
T ss_pred             ccccc------cCCCCcceEEECCCCeeeeccc----cccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCc
Confidence            76631      3345678888888888776643    33478888888888888763  577888899999999988888


Q ss_pred             chhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccC
Q psy3329         278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHEN  357 (694)
Q Consensus       278 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  357 (694)
                      .+..+..+++|++|+|++|.++.++. .+..+++|+.|++++|++..+++. +..+++|+.|++++|.++.++   +.  
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~--  336 (390)
T 3o6n_A          264 MYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LS--  336 (390)
T ss_dssp             ESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CC--
T ss_pred             ChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---ch--
Confidence            88888888899999999988887653 456788899999999988877654 567888999999999888875   22  


Q ss_pred             CCCCCCCeeeCCCCCCc
Q psy3329         358 YTYPDLEELRLSGNPLH  374 (694)
Q Consensus       358 ~~~~~L~~L~Ls~n~l~  374 (694)
                       .+++|+.|++++|++.
T Consensus       337 -~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          337 -THHTLKNLTLSHNDWD  352 (390)
T ss_dssp             -TTCCCSEEECCSSCEE
T ss_pred             -hhccCCEEEcCCCCcc
Confidence             6788999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=8.1e-32  Score=278.86  Aligned_cols=309  Identities=23%  Similarity=0.344  Sum_probs=272.0

Q ss_pred             cccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC
Q psy3329          11 RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL   90 (694)
Q Consensus        11 ~~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L   90 (694)
                      ..+.++++|++|+++++.+..++. +..+++|++|++++|.++.+.+  +..+++|++|++++|.++.++  .+..+++|
T Consensus        38 ~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L  112 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNL  112 (347)
T ss_dssp             ECHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTC
T ss_pred             ccchhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcC
Confidence            455688999999999999999875 8889999999999999998855  899999999999999999874  48999999


Q ss_pred             CEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCC
Q psy3329          91 EYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLA  170 (694)
Q Consensus        91 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  170 (694)
                      ++|++++|.+.++.+  +..+++|+.|++++|.....  + ..+..+++|++|++++|.+..+++  +..+++|++|+++
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD--L-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC--C-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCccc--c-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence            999999999999854  89999999999999955432  2 348899999999999999988876  8899999999999


Q ss_pred             CCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCC
Q psy3329         171 ENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGL  250 (694)
Q Consensus       171 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i  250 (694)
                      +|.+.++..  +  ..+++|+.+++++|.+. .++.  +..+++|+.|++++|.++....   +..+++|++|++++|.+
T Consensus       186 ~n~l~~~~~--~--~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          186 YNQIEDISP--L--ASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             TSCCCCCGG--G--GGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC
T ss_pred             CCccccccc--c--cCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCcc
Confidence            999987655  2  27899999999999984 3433  8899999999999999988764   58899999999999999


Q ss_pred             CcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhh
Q psy3329         251 SRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLF  330 (694)
Q Consensus       251 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  330 (694)
                      +.++  .+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.++...+..+..+++|+.|++++|.++++.+  +
T Consensus       256 ~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~  329 (347)
T 4fmz_A          256 SDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L  329 (347)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred             CCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence            9874  588999999999999999886  357889999999999999999999999999999999999999999887  7


Q ss_pred             cCCCCCCEEeCCCCCCc
Q psy3329         331 QNLTHLSVLELNNCGLT  347 (694)
Q Consensus       331 ~~l~~L~~L~L~~n~l~  347 (694)
                      ..+++|+.|++++|.++
T Consensus       330 ~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          330 ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGCTTCSEESSSCC---
T ss_pred             hhhhccceeehhhhccc
Confidence            88999999999999876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=4.1e-33  Score=297.86  Aligned_cols=327  Identities=22%  Similarity=0.330  Sum_probs=229.3

Q ss_pred             ccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccC
Q psy3329         240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG  319 (694)
Q Consensus       240 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  319 (694)
                      ...++.++.+++.+|...   .++++.|+|++|.+.+..+..|..+++|++|+|++|.++.+.+..|.++++|++|+|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            345556666666666322   24566777777777666666677777777777777777777766777777777777777


Q ss_pred             CcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCC-CcCCCCcccccccccccchhccccch
Q psy3329         320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP-LHVLPDSTKQYSMRTIPTQIWKNFDF  398 (694)
Q Consensus       320 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~ip~~~~~~~~~  398 (694)
                      |+++.+++..|..+++|+.|++++|.++.++...|.   .+++|+.|++++|. +..            ++...      
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~---~l~~L~~L~l~~~~~l~~------------i~~~~------  180 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN---RIPSLRRLDLGELKRLSY------------ISEGA------  180 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT---TCTTCCEEECCCCTTCCE------------ECTTT------
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhh---hCcccCEeCCCCCCCcce------------eCcch------
Confidence            777777766677777777777777777776666665   66777777777643 322            22211      


Q ss_pred             hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q psy3329         399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN  478 (694)
Q Consensus       399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  478 (694)
                                 |.+   +++|+.|++++|.++.++.  +  ..+++|+.|+|++|.|+++++..|.++++|+.|+|++|+
T Consensus       181 -----------~~~---l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          181 -----------FEG---LSNLRYLNLAMCNLREIPN--L--TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             -----------TTT---CSSCCEEECTTSCCSSCCC--C--TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             -----------hhc---ccccCeecCCCCcCccccc--c--CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence                       333   7788888888888887763  4  778999999999999999999999999999999999999


Q ss_pred             cCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCC--CceeecC
Q psy3329         479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGD--IGVLVGS  556 (694)
Q Consensus       479 l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~--~~~~~~~  556 (694)
                      ++++.+..|   ..+++|+.|+|++|+++++++..+..+++|+.+++++|||.|||.+.|+..|.+.....  .....|.
T Consensus       243 l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~  319 (440)
T 3zyj_A          243 IQVIERNAF---DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCN  319 (440)
T ss_dssp             CCEECTTSS---TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEE
T ss_pred             eeEEChhhh---cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCC
Confidence            999988888   88999999999999999999999999999999999999999999999999999863221  1123344


Q ss_pred             CCCcccccccc-CCCCceEEEeecccCCCCCCCCcccccccchhHHHHhhhcCCCCCcccCC
Q psy3329         557 TTPTEIGFGAS-RKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFRP  617 (694)
Q Consensus       557 ~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (694)
                      .|....|..+. .....+.|..+..     ..+.......+|......|.+. .+.+...|.
T Consensus       320 ~P~~l~g~~l~~l~~~~~~C~~P~i-----~~~~~~~~v~~G~~v~L~C~~~-~p~p~i~W~  375 (440)
T 3zyj_A          320 TPPNLKGRYIGELDQNYFTCYAPVI-----VEPPADLNVTEGMAAELKCRAS-TSLTSVSWI  375 (440)
T ss_dssp             ESTTTTTCBCC----CCSCCCCCCE-----EECCCCEEECTTSCCEECCEES-STTSEEEEE
T ss_pred             ChhHhcCccHhHhhhhhccCCCCcc-----cccccceeeccCceEEEEeecC-CCCCceEEE
Confidence            45555443332 2233445542221     1122233344556666667663 344444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.2e-33  Score=308.49  Aligned_cols=320  Identities=23%  Similarity=0.290  Sum_probs=249.1

Q ss_pred             CCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCc
Q psy3329         137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLR  216 (694)
Q Consensus       137 l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  216 (694)
                      +.+++.+++++|.+..+++..+..+++|+.|++++|.+.+                           +++..|..+++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~---------------------------~~~~~~~~l~~L~  102 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---------------------------IDTYAFAYAHTIQ  102 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE---------------------------ECTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC---------------------------CChHHhcCCCCCC
Confidence            3566666666666666666555555555555555555443                           2333466677777


Q ss_pred             EEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCC
Q psy3329         217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYS  296 (694)
Q Consensus       217 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n  296 (694)
                      .|+|++|.++..... .+..+++|+.|++++|.++.+++..|..+++|+.|++++|.+.+..+..+..+++|++|+|++|
T Consensus       103 ~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          103 KLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             EEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence            777777777665543 3467788888888888888888777788888888888888888888888888888888888888


Q ss_pred             CCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCC
Q psy3329         297 NLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVL  376 (694)
Q Consensus       297 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  376 (694)
                      .++.+.   +..+++|+.|++++|.+.++.     ..++|+.|++++|.++.++...      .++|+.|++++|.++..
T Consensus       182 ~l~~~~---~~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~------~~~L~~L~L~~n~l~~~  247 (597)
T 3oja_B          182 RLTHVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPV------NVELTILKLQHNNLTDT  247 (597)
T ss_dssp             CCSBCC---GGGCTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC------CSCCCEEECCSSCCCCC
T ss_pred             CCCCcC---hhhhhhhhhhhcccCcccccc-----CCchhheeeccCCccccccccc------CCCCCEEECCCCCCCCC
Confidence            888775   456788889999998887643     3568999999999988766432      36899999999988753


Q ss_pred             CCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCC
Q psy3329         377 PDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKID  456 (694)
Q Consensus       377 ~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~  456 (694)
                      +.                               +..   +++|+.|+|++|.++++++..|  ..+++|+.|+|++|.++
T Consensus       248 ~~-------------------------------l~~---l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          248 AW-------------------------------LLN---YPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNRLV  291 (597)
T ss_dssp             GG-------------------------------GGG---CTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTSCCC
T ss_pred             hh-------------------------------hcc---CCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCCCCC
Confidence            21                               223   8899999999999999988888  89999999999999999


Q ss_pred             ccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCc
Q psy3329         457 YLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNI  536 (694)
Q Consensus       457 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~  536 (694)
                      +++.. +..+++|+.|+|++|.+++++ ..+   ..+++|+.|+|++|.+++.+   +..+++|+.|++++|+|.|+|..
T Consensus       292 ~l~~~-~~~l~~L~~L~Ls~N~l~~i~-~~~---~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~  363 (597)
T 3oja_B          292 ALNLY-GQPIPTLKVLDLSHNHLLHVE-RNQ---PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR  363 (597)
T ss_dssp             EEECS-SSCCTTCCEEECCSSCCCCCG-GGH---HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             CCCcc-cccCCCCcEEECCCCCCCccC-ccc---ccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH
Confidence            98654 578999999999999999654 445   78999999999999999875   45678999999999999999866


Q ss_pred             HHHHHH
Q psy3329         537 ADMWEW  542 (694)
Q Consensus       537 ~~~~~~  542 (694)
                      .|+..|
T Consensus       364 ~~~~~~  369 (597)
T 3oja_B          364 ALFRNV  369 (597)
T ss_dssp             HHTTTC
T ss_pred             HHHHHH
Confidence            665444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=1e-32  Score=295.86  Aligned_cols=325  Identities=23%  Similarity=0.313  Sum_probs=230.7

Q ss_pred             ccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccC
Q psy3329         240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG  319 (694)
Q Consensus       240 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  319 (694)
                      ...++.++.+++.+|...   .++++.|+|++|.+.+..+..|..+++|++|+|++|.++.+.+..|.++++|++|+|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            345555666666665321   24667777777777766666677777777777777777777766777777777777777


Q ss_pred             CcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCC-CCcCCCCcccccccccccchhccccch
Q psy3329         320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN-PLHVLPDSTKQYSMRTIPTQIWKNFDF  398 (694)
Q Consensus       320 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~ip~~~~~~~~~  398 (694)
                      |.++.+++..|..+++|++|++++|.++.++...|.   .+++|+.|++++| .+..            +|...      
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~~~~l~~------------i~~~~------  191 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEY------------ISEGA------  191 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT---TCTTCCEEECCCCTTCCE------------ECTTT------
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh---cCCcccEEeCCCCCCccc------------cChhh------
Confidence            777777776677777777777777777777666665   6777777777764 3322            22211      


Q ss_pred             hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q psy3329         399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN  478 (694)
Q Consensus       399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  478 (694)
                                 |.+   +++|+.|++++|.+++++.  +  ..+++|+.|+|++|.|+++++..|.++++|+.|+|++|+
T Consensus       192 -----------~~~---l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          192 -----------FEG---LFNLKYLNLGMCNIKDMPN--L--TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             -----------TTT---CTTCCEEECTTSCCSSCCC--C--TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             -----------ccC---CCCCCEEECCCCccccccc--c--cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence                       333   7888888888888888753  4  678999999999999999999999999999999999999


Q ss_pred             cCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCCC--ceeecC
Q psy3329         479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDI--GVLVGS  556 (694)
Q Consensus       479 l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~--~~~~~~  556 (694)
                      ++++.+..|   ..+++|+.|+|++|+++++++..+..+++|+.+++++|||.|||.+.|+..|.+......  ....|.
T Consensus       254 l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~  330 (452)
T 3zyi_A          254 VSLIERNAF---DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCH  330 (452)
T ss_dssp             CCEECTTTT---TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEE
T ss_pred             CceECHHHh---cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeC
Confidence            999988888   889999999999999999999999999999999999999999999999999988732211  122344


Q ss_pred             CCCcccccccc-CCCCceEEEeecccCCCCCCCCcccccccchhHHHHhhhcCCCCCcccC
Q psy3329         557 TTPTEIGFGAS-RKKKGLVCYFDIFTTPTRKRPGRELFASTNKTWARYVKEADCPSSKLFR  616 (694)
Q Consensus       557 ~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (694)
                      .|....|.... .....+.|..+     ............+|......|.+.  |.+.+.|
T Consensus       331 ~P~~l~g~~l~~~~~~~~~C~~P-----~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W  384 (452)
T 3zyi_A          331 APMHMRGRYLVEVDQASFQCSAP-----FIMDAPRDLNISEGRMAELKCRTP--PMSSVKW  384 (452)
T ss_dssp             ESTTTTTCBTTSCCGGGCCCCCC-----CCSBCCCCEECCTTSCCEECCBCC--TTSEEEE
T ss_pred             CchHhccchhhccchhhhcccCc-----ccccccccccccCCCEEEEEEeCC--CCCcEEE
Confidence            45554443332 22234455432     222222333445556666666665  4444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.8e-32  Score=299.02  Aligned_cols=310  Identities=23%  Similarity=0.283  Sum_probs=257.0

Q ss_pred             cCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329          38 VARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL  117 (694)
Q Consensus        38 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  117 (694)
                      .+++++.|++++|.+..+++..|..+++|++|+|++|.++.+++..|..+++|++|+|++|.++++++..|+++++|+.|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            35678888888888888877778888888888888888888887778888888888888888888888888888888888


Q ss_pred             ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCC
Q psy3329         118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSN  197 (694)
Q Consensus       118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~  197 (694)
                      ++++|.+..++.  ..++++++|++|++++|.+..+++..|..+++|++|++++|.+..++..     .+++|+.|++++
T Consensus       129 ~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~l~~L~~L~l~~  201 (597)
T 3oja_B          129 VLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS-----LIPSLFHANVSY  201 (597)
T ss_dssp             ECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG-----GCTTCSEEECCS
T ss_pred             EeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh-----hhhhhhhhhccc
Confidence            888888875433  3467888888888888888888888888888888888888888776422     577888999988


Q ss_pred             CCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc
Q psy3329         198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA  277 (694)
Q Consensus       198 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~  277 (694)
                      |.+.+      +...++|+.|++++|.+......    ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+.
T Consensus       202 n~l~~------l~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~  269 (597)
T 3oja_B          202 NLLST------LAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI  269 (597)
T ss_dssp             SCCSE------EECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred             Ccccc------ccCCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCC
Confidence            87732      34566899999999998776532    237899999999999886  4688899999999999999999


Q ss_pred             chhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccC
Q psy3329         278 FTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHEN  357 (694)
Q Consensus       278 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  357 (694)
                      +|..+..+++|+.|+|++|.+++++ ..+..+++|+.|+|++|.+..+++. +..+++|+.|++++|.++.++.   .  
T Consensus       270 ~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~~---~--  342 (597)
T 3oja_B          270 MYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKL---S--  342 (597)
T ss_dssp             ESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCC---C--
T ss_pred             CHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcCh---h--
Confidence            9999999999999999999999875 4556789999999999999987654 6778999999999999988752   2  


Q ss_pred             CCCCCCCeeeCCCCCCc
Q psy3329         358 YTYPDLEELRLSGNPLH  374 (694)
Q Consensus       358 ~~~~~L~~L~Ls~n~l~  374 (694)
                       .+++|+.|++++|++.
T Consensus       343 -~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          343 -THHTLKNLTLSHNDWD  358 (597)
T ss_dssp             -TTCCCSEEECCSSCEE
T ss_pred             -hcCCCCEEEeeCCCCC
Confidence             6789999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.9e-30  Score=264.11  Aligned_cols=290  Identities=20%  Similarity=0.251  Sum_probs=198.2

Q ss_pred             CCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECC
Q psy3329          41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS  120 (694)
Q Consensus        41 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  120 (694)
                      +++.++++++.+..++. .+  .++|++|++++|.++.+++..|.++++|++|++++|.++++.+.+|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            68888888888887743 33  3688899999999888888788889999999999999988888888899999999999


Q ss_pred             CCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCC
Q psy3329         121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL  200 (694)
Q Consensus       121 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  200 (694)
                      +|.+..++   ..+.  ++|++|++++|.+..+++..|..+++|++|++++|.+.......                   
T Consensus       111 ~n~l~~l~---~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------  166 (332)
T 2ft3_A          111 KNHLVEIP---PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP-------------------  166 (332)
T ss_dssp             SSCCCSCC---SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT-------------------
T ss_pred             CCcCCccC---cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc-------------------
Confidence            99887543   2332  78899999999988888888888888888888888775422211                   


Q ss_pred             CCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchh
Q psy3329         201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA  280 (694)
Q Consensus       201 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  280 (694)
                            ..+..+ +|+.|++++|.++..+..    ..++|++|++++|.++.+++..+..+++|+.|++++|.+.+..+.
T Consensus       167 ------~~~~~l-~L~~L~l~~n~l~~l~~~----~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  235 (332)
T 2ft3_A          167 ------GAFDGL-KLNYLRISEAKLTGIPKD----LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG  235 (332)
T ss_dssp             ------TSSCSC-CCSCCBCCSSBCSSCCSS----SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT
T ss_pred             ------ccccCC-ccCEEECcCCCCCccCcc----ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh
Confidence                  112222 444444444444433211    114566666666666666655666666666666666666666665


Q ss_pred             hcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcC------CCCCCEEeCCCCCCc--ccCcc
Q psy3329         281 LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN------LTHLSVLELNNCGLT--RLNET  352 (694)
Q Consensus       281 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~~~  352 (694)
                      .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+++..|..      ...|+.|++++|.+.  .+.+.
T Consensus       236 ~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~  314 (332)
T 2ft3_A          236 SLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA  314 (332)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred             HhhCCCCCCEEECCCCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc
Confidence            66666667777777776665543 4666677777777777777666655543      255777777777766  45666


Q ss_pred             ccccCCCCCCCCeeeCCCCC
Q psy3329         353 VFHENYTYPDLEELRLSGNP  372 (694)
Q Consensus       353 ~~~~~~~~~~L~~L~Ls~n~  372 (694)
                      .|.   .+++|+.+++++|+
T Consensus       315 ~~~---~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          315 TFR---CVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGT---TBCCSTTEEC----
T ss_pred             ccc---ccchhhhhhccccc
Confidence            665   67777777777764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=3.3e-30  Score=261.55  Aligned_cols=242  Identities=26%  Similarity=0.417  Sum_probs=166.4

Q ss_pred             CccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccC--hhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEe
Q psy3329         263 CLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS--RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE  340 (694)
Q Consensus       263 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  340 (694)
                      +|+.|++++|.+....+..+..+++|++|+|++|.++.+.  +..+..+++|++|++++|.+..++.. +..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEE
Confidence            4444444444444433333444445555555555444321  23334455555555555555444332 44555555555


Q ss_pred             CCCCCCcccCc-cccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCC
Q psy3329         341 LNNCGLTRLNE-TVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL  419 (694)
Q Consensus       341 L~~n~l~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L  419 (694)
                      +++|.++.++. ..+.   .+++|+.|++++|.+.....           ..                  +.+   +++|
T Consensus       108 l~~n~l~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~-----------~~------------------~~~---l~~L  152 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFL---SLRNLIYLDISHTHTRVAFN-----------GI------------------FNG---LSSL  152 (306)
T ss_dssp             CTTSEEESSTTTTTTT---TCTTCCEEECTTSCCEECST-----------TT------------------TTT---CTTC
T ss_pred             CCCCcccccccchhhh---hccCCCEEECCCCcCCccch-----------hh------------------ccc---CcCC
Confidence            55555555443 2333   45556666666655543211           00                  122   6778


Q ss_pred             ceEEcCCCCCcc-cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcE
Q psy3329         420 EELRLSGNPLHV-LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELES  498 (694)
Q Consensus       420 ~~L~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~  498 (694)
                      ++|++++|.+++ ..+..+  ..+++|+.|+|++|.++++++..|..+++|++|+|++|++++..+..+   ..+++|+.
T Consensus       153 ~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~  227 (306)
T 2z66_A          153 EVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY---KCLNSLQV  227 (306)
T ss_dssp             CEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG---TTCTTCCE
T ss_pred             CEEECCCCccccccchhHH--hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc---cCcccCCE
Confidence            888888888776 456666  789999999999999999988889999999999999999999888777   88999999


Q ss_pred             EECCCCcccccChhhhcCCC-cccEEEccCCccccccCcHHHHHHHHh
Q psy3329         499 LDLSNNNLTHISPTVLRHNR-AITSIKLVGNPWKCDCNIADMWEWATR  545 (694)
Q Consensus       499 L~ls~N~l~~~~~~~~~~~~-~l~~l~l~~N~~~c~c~~~~~~~~~~~  545 (694)
                      |++++|++++.++..+..++ +|+.+++++|+|.|+|+..|+..|++.
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~  275 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD  275 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence            99999999999888888884 999999999999999999999999876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=6.9e-30  Score=256.28  Aligned_cols=239  Identities=28%  Similarity=0.436  Sum_probs=179.5

Q ss_pred             cEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCC
Q psy3329         241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN  320 (694)
Q Consensus       241 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  320 (694)
                      +.++.+++.++.+|..   ..++|+.|++++|.+.+..+..+..+++|++|++++|.++.+.+..|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4556666666665532   2345666666666666655555666666666666666666665556666666666666666


Q ss_pred             c-ccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchh
Q psy3329         321 K-LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL  399 (694)
Q Consensus       321 ~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l  399 (694)
                      . +..+.+..+..+++|++|++++|.++.+++..+.   .                                        
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~----------------------------------------  127 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---G----------------------------------------  127 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT---T----------------------------------------
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh---C----------------------------------------
Confidence            5 5555555566666666666666665554433332   1                                        


Q ss_pred             hhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCcc
Q psy3329         400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL  479 (694)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  479 (694)
                                      +++|++|++++|.++++++..+  ..+++|+.|+|++|.++++++..|.++++|+.|++++|++
T Consensus       128 ----------------l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          128 ----------------LAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ----------------CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ----------------CcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence                            5667777777777777777667  7889999999999999999988899999999999999999


Q ss_pred             CCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329         480 SMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       480 ~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~  546 (694)
                      ++..|..|   ..+++|+.|++++|+++++++..+..+++|+.+++++|+|.|+|+..|+..|++..
T Consensus       190 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~  253 (285)
T 1ozn_A          190 AHVHPHAF---RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF  253 (285)
T ss_dssp             CEECTTTT---TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred             cccCHhHc---cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhc
Confidence            99888887   88999999999999999998888999999999999999999999999999999873

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.5e-29  Score=257.96  Aligned_cols=291  Identities=22%  Similarity=0.313  Sum_probs=178.4

Q ss_pred             CCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECC
Q psy3329          41 SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS  120 (694)
Q Consensus        41 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  120 (694)
                      +++.++++++.+..++ ..+  .+.|++|++++|.++.+++..|.++++|++|++++|.++++.|..|.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVP-KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCC-CSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccC-ccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            4555555555554442 211  1455555555555555555455555555555555555555555555555555555555


Q ss_pred             CCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCC
Q psy3329         121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHL  200 (694)
Q Consensus       121 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  200 (694)
                      +|.++.++   ..+  .++|++|++++|.+..+++..+..+++|+.|++++|.+............+++|++|++++|.+
T Consensus       109 ~n~l~~l~---~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          109 KNQLKELP---EKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             SSCCSBCC---SSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCcCCccC---hhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            55554322   111  1455566666555555555555556666666666655543221111112456666666666666


Q ss_pred             CCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchh
Q psy3329         201 KGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA  280 (694)
Q Consensus       201 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  280 (694)
                       ..++...   .++|+.|++++|.++..... .+..+++|+.|++++|.++++++..+..+++|+.|++++|.+. .+|.
T Consensus       184 -~~l~~~~---~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~  257 (330)
T 1xku_A          184 -TTIPQGL---PPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG  257 (330)
T ss_dssp             -CSCCSSC---CTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred             -ccCCccc---cccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence             3344321   26777788877777766443 3467778888888888888777667777888888888888777 4555


Q ss_pred             hcCCCCCCcEEECcCCCCcccChhhhcC------CCCCcEEeccCCcccC--cCchhhcCCCCCCEEeCCCCC
Q psy3329         281 LLSPLESLEHLDMGYSNLQRISRSTFLK------MTSLKTLILSGNKLET--LESGLFQNLTHLSVLELNNCG  345 (694)
Q Consensus       281 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~  345 (694)
                      .+..+++|++|++++|.++.+++..|..      .+.++.|++++|.+..  +.+..|..+.+++.+++++|+
T Consensus       258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            6777888888888888888887776643      3678888888887763  667778888888888888874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.2e-29  Score=258.37  Aligned_cols=291  Identities=19%  Similarity=0.250  Sum_probs=204.6

Q ss_pred             CCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEE
Q psy3329          64 TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTL  143 (694)
Q Consensus        64 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  143 (694)
                      .+++.++++++.++.++.. +  .++|++|++++|.++++.+..|.++++|++|++++|.++.+.  +..+.++++|++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCCSCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEE
T ss_pred             CCCeEEEecCCCccccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC--HHHhcCCCCCCEE
Confidence            3677788887777776543 2  257778888888888777777778888888888888777432  3567777888888


Q ss_pred             EccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCC-CCChhhhhcCCCCcEEEcCC
Q psy3329         144 DLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKG-PLSEDAFVNATKLRTLYLSG  222 (694)
Q Consensus       144 ~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~L~~  222 (694)
                      ++++|.++.++...+   ++|++|++++|.+.......+.  .+++|+.|++++|.+.. .+....+..+++|+.|++++
T Consensus       106 ~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          106 YLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             ECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             ECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhc--CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            888888777665443   5778888888877765544433  67778888888877632 13334577778888888888


Q ss_pred             CCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccC
Q psy3329         223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS  302 (694)
Q Consensus       223 n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  302 (694)
                      |.++..+..    ..++|++|++++|.++++.+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.++.++
T Consensus       181 n~l~~l~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp  256 (330)
T 1xku_A          181 TNITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP  256 (330)
T ss_dssp             SCCCSCCSS----CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred             CccccCCcc----ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC
Confidence            877765432    1267888888888887777677777788888888888877777667777778888888888777655


Q ss_pred             hhhhcCCCCCcEEeccCCcccCcCchhhcC------CCCCCEEeCCCCCCcc--cCccccccCCCCCCCCeeeCCCCC
Q psy3329         303 RSTFLKMTSLKTLILSGNKLETLESGLFQN------LTHLSVLELNNCGLTR--LNETVFHENYTYPDLEELRLSGNP  372 (694)
Q Consensus       303 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~L~~L~Ls~n~  372 (694)
                       ..+..+++|+.|++++|.++++++..|..      ...|+.|++++|.+..  +++..|.   .+..++.+++++|+
T Consensus       257 -~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~---~~~~l~~l~L~~N~  330 (330)
T 1xku_A          257 -GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR---CVYVRAAVQLGNYK  330 (330)
T ss_dssp             -TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT---TCCCGGGEEC----
T ss_pred             -hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc---cccceeEEEecccC
Confidence             35677778888888888887777666643      2667778888887764  5555665   66778888887764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=270.28  Aligned_cols=291  Identities=23%  Similarity=0.338  Sum_probs=211.6

Q ss_pred             CCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEE
Q psy3329         212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL  291 (694)
Q Consensus       212 ~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  291 (694)
                      |+.....+++++.++.++..    -.++|++|++++|++++++...+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~~iP~~----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSG----LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTT----CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCccccccc----ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            44444566666666655421    12467777777777777766667777777777777777777666677777777777


Q ss_pred             ECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCc-hhhcCCCCCCEEeCCCC-CCcccCccccccCCCCCCCCeeeCC
Q psy3329         292 DMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES-GLFQNLTHLSVLELNNC-GLTRLNETVFHENYTYPDLEELRLS  369 (694)
Q Consensus       292 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~Ls  369 (694)
                      ++++|.++.+++..|.++++|++|++++|.++.++. ..+..+++|++|++++| .++.+++..+.   .+++|++|+++
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~l~  182 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA---GLTFLEELEID  182 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT---TCCEEEEEEEE
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc---CCCCCCEEECC
Confidence            777777777776667777777777777777777665 55677777777777777 46666665555   67777777777


Q ss_pred             CCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEE
Q psy3329         370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLD  449 (694)
Q Consensus       370 ~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  449 (694)
                      +|.++....           ..                  +..   +++|++|++++|.++.++...+  ..+++|+.|+
T Consensus       183 ~n~l~~~~~-----------~~------------------l~~---l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~  228 (353)
T 2z80_A          183 ASDLQSYEP-----------KS------------------LKS---IQNVSHLILHMKQHILLLEIFV--DVTSSVECLE  228 (353)
T ss_dssp             ETTCCEECT-----------TT------------------TTT---CSEEEEEEEECSCSTTHHHHHH--HHTTTEEEEE
T ss_pred             CCCcCccCH-----------HH------------------Hhc---cccCCeecCCCCccccchhhhh--hhcccccEEE
Confidence            777654321           11                  222   6778888888888776655444  5678888888


Q ss_pred             ccCCcCCccCCCCCC---CCCCCCEEEccCCccCCC----cchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccE
Q psy3329         450 LSRCKIDYLPPNVFN---NTRNITSLNLANNNLSMT----SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITS  522 (694)
Q Consensus       450 Ls~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~----~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~  522 (694)
                      +++|.+++.++..+.   ....++.++|+++.+++.    +|..+   ..+++|+.|++++|+++.+++..+..+++|+.
T Consensus       229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l---~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  305 (353)
T 2z80_A          229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL---NQISGLLELEFSRNQLKSVPDGIFDRLTSLQK  305 (353)
T ss_dssp             EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH---HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCccccccccccccccccchhhccccccccccCcchhhhHHHH---hcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence            888888886654333   466788999999988763    34445   78999999999999999887777889999999


Q ss_pred             EEccCCccccccC-cHHHHHHHHhc
Q psy3329         523 IKLVGNPWKCDCN-IADMWEWATRE  546 (694)
Q Consensus       523 l~l~~N~~~c~c~-~~~~~~~~~~~  546 (694)
                      +++++|++.|+|+ +.|+..|....
T Consensus       306 L~L~~N~~~~~~~~l~~l~~~~~~~  330 (353)
T 2z80_A          306 IWLHTNPWDCSCPRIDYLSRWLNKN  330 (353)
T ss_dssp             EECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred             EEeeCCCccCcCCCcHHHHHHHHhc
Confidence            9999999999997 88999998874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.9e-29  Score=258.96  Aligned_cols=289  Identities=19%  Similarity=0.284  Sum_probs=203.5

Q ss_pred             CCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCC
Q psy3329          17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN   96 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~   96 (694)
                      .+++.++++++.++.+|..+  .+++++|++++|.+..+.+..|.++++|++|++++|.++.+.+..|..+++|++|+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            37999999999999999655  4789999999999999989899999999999999999999988889999999999999


Q ss_pred             CCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCC--CCccccCCCCCCcEEeCCCCCC
Q psy3329          97 RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISN--LPDNVFANNTWLRNLNLAENEL  174 (694)
Q Consensus        97 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~l  174 (694)
                      +|.++.+++..+   ++|++|++++|.+..+..  ..+.++++|++|++++|.++.  ..+..+..+ +|++|++++|.+
T Consensus       111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             SSCCCSCCSSCC---TTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCcCCccCcccc---ccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            999998754433   799999999999986543  568899999999999999964  666667777 888888888887


Q ss_pred             CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCC
Q psy3329         175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP  254 (694)
Q Consensus       175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~  254 (694)
                      +.++..     ..++|++|++++|.+. .++...+..+++|+.|++++|                         .+++++
T Consensus       185 ~~l~~~-----~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N-------------------------~l~~~~  233 (332)
T 2ft3_A          185 TGIPKD-----LPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN-------------------------QIRMIE  233 (332)
T ss_dssp             SSCCSS-----SCSSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSS-------------------------CCCCCC
T ss_pred             CccCcc-----ccCCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCC-------------------------cCCcCC
Confidence            764321     1245566666666552 233233444455555555544                         444444


Q ss_pred             cccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcC------CCCCcEEeccCCccc--CcC
Q psy3329         255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK------MTSLKTLILSGNKLE--TLE  326 (694)
Q Consensus       255 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~  326 (694)
                      +..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.++...|..      .+.|+.|++++|.+.  .+.
T Consensus       234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~  312 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ  312 (332)
T ss_dssp             TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred             hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC
Confidence            444455555555555555544 23333445555555555555555555444433      245667777777665  556


Q ss_pred             chhhcCCCCCCEEeCCCCC
Q psy3329         327 SGLFQNLTHLSVLELNNCG  345 (694)
Q Consensus       327 ~~~l~~l~~L~~L~L~~n~  345 (694)
                      +..|..+++|+.+++++|+
T Consensus       313 ~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          313 PATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGGTTBCCSTTEEC----
T ss_pred             cccccccchhhhhhccccc
Confidence            6666677777777776653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2e-30  Score=263.19  Aligned_cols=255  Identities=19%  Similarity=0.206  Sum_probs=203.5

Q ss_pred             CCccEEEccCcCCCc--CCcccccCCCCccEEeCCC-CCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcE
Q psy3329         238 TKLHRLSLRNCGLSR--LPANTFHRFTCLQELDISH-NPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT  314 (694)
Q Consensus       238 ~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  314 (694)
                      .+++.|++++|.+++  ..+..+..+++|++|++++ |.+.+.+|..+..+++|++|+|++|.+++..+..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467777777777775  4445677778888888874 7777777777777888888888888887666677778888888


Q ss_pred             EeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCC-CCCeeeCCCCCCcCCCCcccccccccccchhc
Q psy3329         315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP-DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIW  393 (694)
Q Consensus       315 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~  393 (694)
                      |++++|.+++..+..+..+++|++|++++|.+++..+..+.   .++ .|+.|++++|+++.           .+|..+ 
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~~L~~L~L~~N~l~~-----------~~~~~~-  194 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG---SFSKLFTSMTISRNRLTG-----------KIPPTF-  194 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG---CCCTTCCEEECCSSEEEE-----------ECCGGG-
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh---hhhhcCcEEECcCCeeec-----------cCChHH-
Confidence            88888888877777777888888888888888753333343   555 78888888887752           222221 


Q ss_pred             cccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEE
Q psy3329         394 KNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLN  473 (694)
Q Consensus       394 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  473 (694)
                                       ..   ++ |+.|++++|.+++..+..+  ..+++|+.|+|++|.+++.++. +..+++|++|+
T Consensus       195 -----------------~~---l~-L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~  250 (313)
T 1ogq_A          195 -----------------AN---LN-LAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD  250 (313)
T ss_dssp             -----------------GG---CC-CSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred             -----------------hC---Cc-ccEEECcCCcccCcCCHHH--hcCCCCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence                             22   44 9999999999998888888  8899999999999999987776 78899999999


Q ss_pred             ccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC
Q psy3329         474 LANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN  535 (694)
Q Consensus       474 L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~  535 (694)
                      |++|++++.+|..+   ..+++|+.|+|++|++++.+|.. ..+++|+.+++++|++.|+.+
T Consensus       251 Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          251 LRNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCSSCCEECCCGGG---GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CcCCcccCcCChHH---hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            99999999999888   88999999999999999988876 778999999999999999754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1e-30  Score=281.84  Aligned_cols=357  Identities=22%  Similarity=0.275  Sum_probs=272.4

Q ss_pred             CCCceEEECcCCCCcchh--hhhhcCCCCcEEEccCCcCCcc----ChhhccCCCCCCeEECCCCCCCccCCCCC-CCCC
Q psy3329          16 NPGLITINLNANPIQPVE--GAFLVARSLLYLYMQECTLSKI----NPQFFTNLTTLNKLDLSGNPLRIIEPGVF-DPLT   88 (694)
Q Consensus        16 ~~~L~~L~Ls~~~l~~i~--~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~   88 (694)
                      .+++++|+|+++.++..+  ..+..+++|++|++++|.+...    .+..+..+++|++|++++|.+.......+ ..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            357899999999999766  4588999999999999998753    25668889999999999999875322112 2333


Q ss_pred             ----CCCEEeCCCCcCCc----cChhhhcCCCCCCEEECCCCcCCccc--hhhhh-hcCCCCCCEEEccCCCCCCCC---
Q psy3329          89 ----SLEYLMLNRCNLTY----ISPSAFDNLNHLKTLELSQNKLKSHI--DWTLV-LGNLGKLDTLDLRQSGISNLP---  154 (694)
Q Consensus        89 ----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~-~~~l~~L~~L~L~~n~i~~~~---  154 (694)
                          +|++|++++|.++.    ..+..+..+++|++|++++|.+...+  .+... ....++|++|++++|.++...   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                79999999999985    34788999999999999999987432  12222 233678999999999998754   


Q ss_pred             -ccccCCCCCCcEEeCCCCCCCCcchhhhc---ccCCCcccEEeCCCCCCCCCC---ChhhhhcCCCCcEEEcCCCCCCc
Q psy3329         155 -DNVFANNTWLRNLNLAENELIDLDVATTL---GQNLVHLDSLDLSNCHLKGPL---SEDAFVNATKLRTLYLSGNPLSA  227 (694)
Q Consensus       155 -~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~~L~~L~L~~n~l~~  227 (694)
                       +..+..+++|++|++++|.+.+.......   ....++|++|++++|.+.+..   -...+..+++|++|++++|.+++
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             34566789999999999998754333221   113569999999999984421   12456789999999999999876


Q ss_pred             cchh----hhccCCCCccEEEccCcCCCcCC----cccccCCCCccEEeCCCCCCcccchhhc-----CCCCCCcEEECc
Q psy3329         228 ADLS----VALKPLTKLHRLSLRNCGLSRLP----ANTFHRFTCLQELDISHNPLIDAFTALL-----SPLESLEHLDMG  294 (694)
Q Consensus       228 ~~~~----~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~  294 (694)
                      ....    .....+++|+.|++++|.++...    +..+..+++|++|++++|.+.+..+..+     ...++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            5432    12235899999999999998732    3456778999999999999876543332     234699999999


Q ss_pred             CCCCcccC----hhhhcCCCCCcEEeccCCcccCcCchhhcC-----CCCCCEEeCCCCCCcc----cCccccccCCCCC
Q psy3329         295 YSNLQRIS----RSTFLKMTSLKTLILSGNKLETLESGLFQN-----LTHLSVLELNNCGLTR----LNETVFHENYTYP  361 (694)
Q Consensus       295 ~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~~~~~  361 (694)
                      +|.++...    +..+..+++|++|++++|.+++..+..+..     .++|+.|++++|.++.    ..+..+.   .++
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---~~~  398 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL---ANH  398 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH---HCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH---hCC
Confidence            99998763    345677899999999999998765544432     6799999999999985    2233333   689


Q ss_pred             CCCeeeCCCCCCcC
Q psy3329         362 DLEELRLSGNPLHV  375 (694)
Q Consensus       362 ~L~~L~Ls~n~l~~  375 (694)
                      +|++|++++|+++.
T Consensus       399 ~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          399 SLRELDLSNNCLGD  412 (461)
T ss_dssp             CCCEEECCSSSCCH
T ss_pred             CccEEECCCCCCCH
Confidence            99999999999863

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=2.3e-30  Score=279.15  Aligned_cols=361  Identities=19%  Similarity=0.159  Sum_probs=276.9

Q ss_pred             cCCCCCceEEECcCCCCc-----chhhhhhcCCCCcEEEccCCcCCccChhhc-cCCC----CCCeEECCCCCCCc----
Q psy3329          13 NLDNPGLITINLNANPIQ-----PVEGAFLVARSLLYLYMQECTLSKINPQFF-TNLT----TLNKLDLSGNPLRI----   78 (694)
Q Consensus        13 ~~~~~~L~~L~Ls~~~l~-----~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~----~L~~L~Ls~n~~~~----   78 (694)
                      |..+++|++|++++|.++     .++..+..+++|++|++++|.+....+..+ ..++    +|++|++++|.++.    
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            677899999999999998     456788889999999999999877544433 3455    79999999999984    


Q ss_pred             cCCCCCCCCCCCCEEeCCCCcCCccChhhh-----cCCCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCCC
Q psy3329          79 IEPGVFDPLTSLEYLMLNRCNLTYISPSAF-----DNLNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGIS  151 (694)
Q Consensus        79 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i~  151 (694)
                      ..+..+..+++|++|++++|.+++..+..+     ...++|++|++++|.++..+  .++..+..+++|++|++++|.+.
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            335668899999999999999986544433     23678999999999988643  35667788999999999999987


Q ss_pred             CCCccccC-----CCCCCcEEeCCCCCCCCcch---hhhcccCCCcccEEeCCCCCCCCCC----ChhhhhcCCCCcEEE
Q psy3329         152 NLPDNVFA-----NNTWLRNLNLAENELIDLDV---ATTLGQNLVHLDSLDLSNCHLKGPL----SEDAFVNATKLRTLY  219 (694)
Q Consensus       152 ~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~  219 (694)
                      ......+.     ..++|++|++++|.++....   ...+. .+++|++|++++|.+.+..    ....+..+++|+.|+
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence            55443332     36689999999999887542   22222 6899999999999874221    122233589999999


Q ss_pred             cCCCCCCccc---hhhhccCCCCccEEEccCcCCCcCCccccc-----CCCCccEEeCCCCCCccc----chhhcCCCCC
Q psy3329         220 LSGNPLSAAD---LSVALKPLTKLHRLSLRNCGLSRLPANTFH-----RFTCLQELDISHNPLIDA----FTALLSPLES  287 (694)
Q Consensus       220 L~~n~l~~~~---~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~L~L~~n~~~~~----~~~~~~~l~~  287 (694)
                      +++|.++...   ....+..+++|++|++++|.+++.....+.     ..++|+.|++++|.+.+.    ++..+..+++
T Consensus       263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  342 (461)
T 1z7x_W          263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF  342 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred             CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence            9999998754   233456789999999999998754433332     336999999999999875    5666778899


Q ss_pred             CcEEECcCCCCcccChhhhcC-----CCCCcEEeccCCcccC----cCchhhcCCCCCCEEeCCCCCCcccCccccccC-
Q psy3329         288 LEHLDMGYSNLQRISRSTFLK-----MTSLKTLILSGNKLET----LESGLFQNLTHLSVLELNNCGLTRLNETVFHEN-  357 (694)
Q Consensus       288 L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-  357 (694)
                      |++|++++|.++......+..     .++|+.|++++|.++.    ..+..+..+++|++|++++|.++......+... 
T Consensus       343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l  422 (461)
T 1z7x_W          343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV  422 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred             ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh
Confidence            999999999998766554542     6899999999999985    445667889999999999999987533332210 


Q ss_pred             -CCCCCCCeeeCCCCCCc
Q psy3329         358 -YTYPDLEELRLSGNPLH  374 (694)
Q Consensus       358 -~~~~~L~~L~Ls~n~l~  374 (694)
                       .....|+.|++.++.+.
T Consensus       423 ~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          423 RQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             TSTTCCCCEEECTTCCCC
T ss_pred             ccCCcchhheeecccccC
Confidence             02457899999888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3.8e-27  Score=251.58  Aligned_cols=248  Identities=25%  Similarity=0.373  Sum_probs=200.2

Q ss_pred             CcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECc
Q psy3329         215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG  294 (694)
Q Consensus       215 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  294 (694)
                      ...++..+..++.++..    -.++++.|++++|+++.+++..|..+++|+.|+|++|.+.+..+..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~~iP~~----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDG----ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSC----CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCC----CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            45666666666655422    22677888888888888777778888888888888888888777788888888888888


Q ss_pred             CCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCC-CCCcccCccccccCCCCCCCCeeeCCCCCC
Q psy3329         295 YSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN-CGLTRLNETVFHENYTYPDLEELRLSGNPL  373 (694)
Q Consensus       295 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l  373 (694)
                      +|.++.+++..|..+++|++|+|++|.+..+++..|..+++|+.|++++ +.++.++...|.   .+++|+.|++++|.+
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCNL  197 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT---TCSSCCEEECTTSCC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh---cccccCeecCCCCcC
Confidence            8888888877788888888888888888888887788888888888887 456667776676   788888888888888


Q ss_pred             cCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCC
Q psy3329         374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC  453 (694)
Q Consensus       374 ~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n  453 (694)
                      +.++.                               +..   +++|+.|+|++|.++++.+..|  ..+++|+.|+|++|
T Consensus       198 ~~~~~-------------------------------~~~---l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          198 REIPN-------------------------------LTP---LIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQS  241 (440)
T ss_dssp             SSCCC-------------------------------CTT---CSSCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTC
T ss_pred             ccccc-------------------------------cCC---CcccCEEECCCCccCccChhhh--ccCccCCEEECCCC
Confidence            76542                               122   7888999999999998888888  88899999999999


Q ss_pred             cCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329         454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH  508 (694)
Q Consensus       454 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~  508 (694)
                      +|+++++..|.++++|+.|+|++|+++++.+..|   ..+++|+.|+|++|.+..
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF---TPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT---SSCTTCCEEECCSSCEEC
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCCCccChhHh---ccccCCCEEEcCCCCccC
Confidence            9999888888999999999999999998888777   788899999999998764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=5e-27  Score=251.62  Aligned_cols=248  Identities=25%  Similarity=0.331  Sum_probs=190.6

Q ss_pred             CcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECc
Q psy3329         215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG  294 (694)
Q Consensus       215 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~  294 (694)
                      ...++.++..++.++.    .-.++++.|++++|+++.+++..|..+++|+.|+|++|.+.+..+..|.++++|++|+|+
T Consensus        56 ~~~v~c~~~~l~~iP~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQ----GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccCC----CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4456666666555442    122577778888887777777777778888888888888877777777788888888888


Q ss_pred             CCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCC-CCCcccCccccccCCCCCCCCeeeCCCCCC
Q psy3329         295 YSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN-CGLTRLNETVFHENYTYPDLEELRLSGNPL  373 (694)
Q Consensus       295 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l  373 (694)
                      +|.++.+++..|.++++|++|+|++|.++.+++..|..+++|+.|++++ +.++.++...|.   .+++|+.|++++|.+
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~---~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCNI  208 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT---TCTTCCEEECTTSCC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc---CCCCCCEEECCCCcc
Confidence            8888877777777888888888888888877777778888888888887 456666666666   678888888888887


Q ss_pred             cCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCC
Q psy3329         374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC  453 (694)
Q Consensus       374 ~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n  453 (694)
                      +.++.                               +..   +++|+.|++++|.++++.+..|  ..+++|+.|+|++|
T Consensus       209 ~~~~~-------------------------------~~~---l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          209 KDMPN-------------------------------LTP---LVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNS  252 (452)
T ss_dssp             SSCCC-------------------------------CTT---CTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTS
T ss_pred             ccccc-------------------------------ccc---cccccEEECcCCcCcccCcccc--cCccCCCEEEeCCC
Confidence            65542                               112   7788888888888888888777  78888888888888


Q ss_pred             cCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329         454 KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH  508 (694)
Q Consensus       454 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~  508 (694)
                      .++++.+..|.++++|+.|+|++|+++++++..|   ..+++|+.|+|++|.+..
T Consensus       253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF---TPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS---TTCTTCCEEECCSSCEEC
T ss_pred             cCceECHHHhcCCCCCCEEECCCCcCCccChHHh---ccccCCCEEEccCCCcCC
Confidence            8888888888888888888888888888877777   778888888888887765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.9e-27  Score=241.28  Aligned_cols=276  Identities=21%  Similarity=0.298  Sum_probs=215.0

Q ss_pred             cEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCccc--chhhcCCCCCCcEEEC
Q psy3329         216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA--FTALLSPLESLEHLDM  293 (694)
Q Consensus       216 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L  293 (694)
                      +.++++++.++..+.    ...++|++|++++|.++.++...|..+++|+.|++++|.+...  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~~ip~----~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCCS----CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCCC----CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            456666666665543    1236788888888888888877788888888999888888743  2455667888999999


Q ss_pred             cCCCCcccChhhhcCCCCCcEEeccCCcccCcCc-hhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCC
Q psy3329         294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLES-GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP  372 (694)
Q Consensus       294 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~  372 (694)
                      ++|.+..++. .+..+++|++|++++|.++++.+ ..+..+++|+.|++++|.++.+.+..+.   .+++|++|++++|.
T Consensus        86 s~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~  161 (306)
T 2z66_A           86 SFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGNS  161 (306)
T ss_dssp             CSCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT---TCTTCCEEECTTCE
T ss_pred             CCCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc---cCcCCCEEECCCCc
Confidence            9998887654 47788999999999999888776 5688889999999999998887777776   78899999999998


Q ss_pred             CcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccC
Q psy3329         373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR  452 (694)
Q Consensus       373 l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~  452 (694)
                      ++..          .+|..                  +..   +++|+.|++++|.++++++..+  ..+++|+.|+|++
T Consensus       162 l~~~----------~~~~~------------------~~~---l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~  208 (306)
T 2z66_A          162 FQEN----------FLPDI------------------FTE---LRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSH  208 (306)
T ss_dssp             EGGG----------EECSC------------------CTT---CTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTT
T ss_pred             cccc----------cchhH------------------Hhh---CcCCCEEECCCCCcCCcCHHHh--cCCCCCCEEECCC
Confidence            7530          11111                  223   8899999999999999988888  8899999999999


Q ss_pred             CcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhccc-CCCcEEECCCCcccccCh--hhhcCCCcccEEEccCCc
Q psy3329         453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVL-LELESLDLSNNNLTHISP--TVLRHNRAITSIKLVGNP  529 (694)
Q Consensus       453 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l-~~L~~L~ls~N~l~~~~~--~~~~~~~~l~~l~l~~N~  529 (694)
                      |.++++++..+..+++|+.|+|++|++++..+..+   ..+ ++|+.|+|++|.+++..+  .....+...+.+.+..+.
T Consensus       209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~  285 (306)
T 2z66_A          209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL---QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER  285 (306)
T ss_dssp             SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC---CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred             CccCccChhhccCcccCCEeECCCCCCcccCHHHH---HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence            99999998889999999999999999999988877   677 499999999999987432  222223334445556677


Q ss_pred             cccccC
Q psy3329         530 WKCDCN  535 (694)
Q Consensus       530 ~~c~c~  535 (694)
                      +.|.-+
T Consensus       286 ~~C~~p  291 (306)
T 2z66_A          286 MECATP  291 (306)
T ss_dssp             CBEEES
T ss_pred             cccCCc
Confidence            777543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=1.1e-26  Score=232.59  Aligned_cols=215  Identities=31%  Similarity=0.409  Sum_probs=156.5

Q ss_pred             CCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCC
Q psy3329         284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL  363 (694)
Q Consensus       284 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  363 (694)
                      .++++++++++++.++.++...   .++++.|+|++|.++++.+..|..+++|+.|++++|.++.++..  .   .+++|
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~---~l~~L   79 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--G---TLPVL   79 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--S---CCTTC
T ss_pred             ccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--C---CCCcC
Confidence            3344444444444444443221   13455555555555555555555555555555555555554332  1   45666


Q ss_pred             CeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCC
Q psy3329         364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS  443 (694)
Q Consensus       364 ~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~  443 (694)
                      +.|++++|+++.++..                              +.+   +++|+.|++++|.++++++..|  ..++
T Consensus        80 ~~L~Ls~N~l~~l~~~------------------------------~~~---l~~L~~L~l~~N~l~~l~~~~~--~~l~  124 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLL------------------------------GQT---LPALTVLDVSFNRLTSLPLGAL--RGLG  124 (290)
T ss_dssp             CEEECCSSCCSSCCCC------------------------------TTT---CTTCCEEECCSSCCCCCCSSTT--TTCT
T ss_pred             CEEECCCCcCCcCchh------------------------------hcc---CCCCCEEECCCCcCcccCHHHH--cCCC
Confidence            6666666666543320                              112   7788889999999998888888  8899


Q ss_pred             CccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEE
Q psy3329         444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSI  523 (694)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l  523 (694)
                      +|+.|+|++|+|+++++..|..+++|+.|+|++|+++++++..|   ..+++|+.|+|++|+++.+++. +....+|+.+
T Consensus       125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~---~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l  200 (290)
T 1p9a_G          125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL---NGLENLDTLLLQENSLYTIPKG-FFGSHLLPFA  200 (290)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT---TTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEE
T ss_pred             CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHh---cCcCCCCEEECCCCcCCccChh-hcccccCCeE
Confidence            99999999999999999999999999999999999998888777   7899999999999999976555 4456789999


Q ss_pred             EccCCccccccCcHHHHHHHHh
Q psy3329         524 KLVGNPWKCDCNIADMWEWATR  545 (694)
Q Consensus       524 ~l~~N~~~c~c~~~~~~~~~~~  545 (694)
                      ++++|||.|+|.+.|+..|+..
T Consensus       201 ~L~~Np~~C~c~~~~l~~wl~~  222 (290)
T 1p9a_G          201 FLHGNPWLCNCEILYFRRWLQD  222 (290)
T ss_dssp             ECCSCCBCCSGGGHHHHHHHHH
T ss_pred             EeCCCCccCcCccHHHHHHHHh
Confidence            9999999999999999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=1.7e-26  Score=229.39  Aligned_cols=195  Identities=35%  Similarity=0.576  Sum_probs=145.7

Q ss_pred             CCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccc
Q psy3329         311 SLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPT  390 (694)
Q Consensus       311 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~  390 (694)
                      +++.|+|++|.+..+++..|..+++|++|++++|.++.++...|.   .+++|++|++++|+++.++.            
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~---~l~~L~~L~l~~n~l~~~~~------------  102 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK---ELKNLETLWVTDNKLQALPI------------  102 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS---SCTTCCEEECCSSCCCCCCT------------
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc---CCCCCCEEECCCCcCCcCCH------------
Confidence            344444444444444444444444555555555554444444443   44555555555555443321            


Q ss_pred             hhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC
Q psy3329         391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT  470 (694)
Q Consensus       391 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  470 (694)
                      ..                 |..   +++|+.|++++|.++++++..|  ..+++|+.|+|++|.|+++++..|..+++|+
T Consensus       103 ~~-----------------~~~---l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  160 (270)
T 2o6q_A          103 GV-----------------FDQ---LVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGVFDKLTSLK  160 (270)
T ss_dssp             TT-----------------TTT---CSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hH-----------------ccc---ccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence            00                 222   6778888888888888888777  8899999999999999999998899999999


Q ss_pred             EEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         471 SLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       471 ~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      .|+|++|+++++.+..|   ..+++|++|+|++|+++++++..+..+++|+.+++++|||.|+|+ +.|+..|+..
T Consensus       161 ~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~  233 (270)
T 2o6q_A          161 ELRLYNNQLKRVPEGAF---DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKK  233 (270)
T ss_dssp             EEECCSSCCSCCCTTTT---TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHH
T ss_pred             eeEecCCcCcEeChhHh---ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHh
Confidence            99999999999888777   889999999999999999988889999999999999999999998 7889999876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.6e-29  Score=279.93  Aligned_cols=429  Identities=13%  Similarity=0.061  Sum_probs=247.5

Q ss_pred             hhhhcCCCCcEEEccCCcCC---ccChhh------------ccCCCCCCeEECCCCCCCccCCCCCCC-CCC-CCEEeCC
Q psy3329          34 GAFLVARSLLYLYMQECTLS---KINPQF------------FTNLTTLNKLDLSGNPLRIIEPGVFDP-LTS-LEYLMLN   96 (694)
Q Consensus        34 ~~~~~~~~L~~L~l~~n~l~---~~~~~~------------~~~l~~L~~L~Ls~n~~~~~~~~~~~~-l~~-L~~L~L~   96 (694)
                      ..+..+++|++|++++|...   +..|..            ...+++|++|+|++|.++......+.. +++ |++|+++
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~  146 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD  146 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence            55566677777777654210   111111            125677777777777665433332333 233 7777777


Q ss_pred             CCc-CCcc-ChhhhcCCCCCCEEECCCCcCCccch--hhhhhcCCCCCCEEEccCCCCCCCCcc----ccCCCCCCcEEe
Q psy3329          97 RCN-LTYI-SPSAFDNLNHLKTLELSQNKLKSHID--WTLVLGNLGKLDTLDLRQSGISNLPDN----VFANNTWLRNLN  168 (694)
Q Consensus        97 ~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~~~~L~~L~  168 (694)
                      +|. +... .+....++++|++|++++|.+.+.+.  ++....++++|++|++++|.++.+...    .+.++++|++|+
T Consensus       147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~  226 (592)
T 3ogk_B          147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK  226 (592)
T ss_dssp             SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence            765 1111 11223466777777777776654321  334455677777777777777644332    234667777777


Q ss_pred             CCCCCCCCcchhhhcccCCCcccEEeCCCCCCC---CCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEc
Q psy3329         169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLK---GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL  245 (694)
Q Consensus       169 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l  245 (694)
                      +++|.+.++.  .... .+++|++|+++.+...   ... ...+..+++|+.|+++++....  ....+..+++|++|++
T Consensus       227 L~~~~~~~l~--~~~~-~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~L  300 (592)
T 3ogk_B          227 VGDFEILELV--GFFK-AAANLEEFCGGSLNEDIGMPEK-YMNLVFPRKLCRLGLSYMGPNE--MPILFPFAAQIRKLDL  300 (592)
T ss_dssp             CSSCBGGGGH--HHHH-HCTTCCEEEECBCCCCTTCTTS-SSCCCCCTTCCEEEETTCCTTT--GGGGGGGGGGCCEEEE
T ss_pred             ccCccHHHHH--HHHh-hhhHHHhhcccccccccchHHH-HHHhhccccccccCccccchhH--HHHHHhhcCCCcEEec
Confidence            7777665533  2222 5677777777653221   111 1235567788888887753322  2234466778888888


Q ss_pred             cCcCCCcCCc-ccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcC-----------CCCcccChh-hhcCCCCC
Q psy3329         246 RNCGLSRLPA-NTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY-----------SNLQRISRS-TFLKMTSL  312 (694)
Q Consensus       246 ~~n~i~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~-~~~~l~~L  312 (694)
                      ++|.++.... ..+..+++|+.|+++++...+.++.....+++|++|++++           +.++..... .+.++++|
T Consensus       301 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L  380 (592)
T 3ogk_B          301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL  380 (592)
T ss_dssp             TTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred             CCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence            8887654322 2356788888888883322233444445678888888883           455543222 24568899


Q ss_pred             cEEeccCCcccCcCchhhcC-CCCCCEEeCC----CCCCcccCcc-----ccccCCCCCCCCeeeCCCCCCcCCCCcccc
Q psy3329         313 KTLILSGNKLETLESGLFQN-LTHLSVLELN----NCGLTRLNET-----VFHENYTYPDLEELRLSGNPLHVLPDSTKQ  382 (694)
Q Consensus       313 ~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~~~~-----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  382 (694)
                      ++|+++.|.+++.....+.. +++|+.|+++    .|.+++.+..     .+.   .+++|+.|++++|.          
T Consensus       381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~---~~~~L~~L~L~~~~----------  447 (592)
T 3ogk_B          381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI---GCKKLRRFAFYLRQ----------  447 (592)
T ss_dssp             SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH---HCTTCCEEEEECCG----------
T ss_pred             eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH---hCCCCCEEEEecCC----------
Confidence            99999888887665555544 8889999996    5667664321     122   34555555554322          


Q ss_pred             cccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCc-cCCC
Q psy3329         383 YSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY-LPPN  461 (694)
Q Consensus       383 ~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~  461 (694)
                                                                  +.+++.....+ ...+++|+.|+|++|.+++ ..+.
T Consensus       448 --------------------------------------------~~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~  482 (592)
T 3ogk_B          448 --------------------------------------------GGLTDLGLSYI-GQYSPNVRWMLLGYVGESDEGLME  482 (592)
T ss_dssp             --------------------------------------------GGCCHHHHHHH-HHSCTTCCEEEECSCCSSHHHHHH
T ss_pred             --------------------------------------------CCccHHHHHHH-HHhCccceEeeccCCCCCHHHHHH
Confidence                                                        01221111111 0235677777777777765 2233


Q ss_pred             CCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhh-hcCCCcccEEEccCC
Q psy3329         462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTV-LRHNRAITSIKLVGN  528 (694)
Q Consensus       462 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~l~~l~l~~N  528 (694)
                      .+.++++|++|+|++|.+++.....+  ...+++|+.|+|++|+++...... ...++.+....+..+
T Consensus       483 ~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          483 FSRGCPNLQKLEMRGCCFSERAIAAA--VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHTCCTTCCEEEEESCCCBHHHHHHH--HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHhcCcccCeeeccCCCCcHHHHHHH--HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            34667888888888888764322222  256788888888888887653332 234566665555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=5.4e-28  Score=245.33  Aligned_cols=232  Identities=21%  Similarity=0.232  Sum_probs=141.1

Q ss_pred             cCCCCccEEEccC-cCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCc
Q psy3329         235 KPLTKLHRLSLRN-CGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK  313 (694)
Q Consensus       235 ~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  313 (694)
                      ..+++|++|++++ |.+.+..+..+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+++..+..+..+++|+
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  152 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence            4445555555552 444433334455555555555555555555555555555555555555555544445555555555


Q ss_pred             EEeccCCcccCcCchhhcCCC-CCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchh
Q psy3329         314 TLILSGNKLETLESGLFQNLT-HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQI  392 (694)
Q Consensus       314 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~  392 (694)
                      +|++++|.+++..+..+..++ +|+.|++++|.+++..+..+.   .+. |+.|++++|.++...           |.. 
T Consensus       153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~---~l~-L~~L~Ls~N~l~~~~-----------~~~-  216 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA---NLN-LAFVDLSRNMLEGDA-----------SVL-  216 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG---GCC-CSEEECCSSEEEECC-----------GGG-
T ss_pred             eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh---CCc-ccEEECcCCcccCcC-----------CHH-
Confidence            555555555544444455554 555555555555543333333   233 666666665554221           111 


Q ss_pred             ccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEE
Q psy3329         393 WKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSL  472 (694)
Q Consensus       393 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  472 (694)
                                       +..   +++|+.|++++|.+++..+. +  ..+++|++|+|++|.|++..|..|..+++|+.|
T Consensus       217 -----------------~~~---l~~L~~L~L~~N~l~~~~~~-~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  273 (313)
T 1ogq_A          217 -----------------FGS---DKNTQKIHLAKNSLAFDLGK-V--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             -----------------CCT---TSCCSEEECCSSEECCBGGG-C--CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             -----------------Hhc---CCCCCEEECCCCceeeecCc-c--cccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence                             122   66777777777777765554 4  567888888888888888778888888889999


Q ss_pred             EccCCccCCCcchhhhhhcccCCCcEEECCCCc-cccc
Q psy3329         473 NLANNNLSMTSELSFQFLDVLLELESLDLSNNN-LTHI  509 (694)
Q Consensus       473 ~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~-l~~~  509 (694)
                      +|++|++++.+|..    ..+++|+.+++++|. +.|.
T Consensus       274 ~Ls~N~l~~~ip~~----~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          274 NVSFNNLCGEIPQG----GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ECCSSEEEEECCCS----TTGGGSCGGGTCSSSEEEST
T ss_pred             ECcCCcccccCCCC----ccccccChHHhcCCCCccCC
Confidence            99999888877764    577888888898887 5543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=244.89  Aligned_cols=282  Identities=20%  Similarity=0.229  Sum_probs=158.6

Q ss_pred             CCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeC
Q psy3329          16 NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML   95 (694)
Q Consensus        16 ~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L   95 (694)
                      |+.....+++++.++.+|..+.  ++|++|++++|.++.+.+..|.++++|++|++++|.++.+.+..|.++++|++|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            3444456666666666664332  46666666666666665556666666666666666666666666666666666666


Q ss_pred             CCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCC-CCCCCCccccCCCCCCcEEeCCCCCC
Q psy3329          96 NRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQS-GISNLPDNVFANNTWLRNLNLAENEL  174 (694)
Q Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l  174 (694)
                      ++|.++++++..+.++++|++|++++|.+..+.. ...+.++++|++|++++| .+..+++..+..++            
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~------------  174 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT------------  174 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC------------
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCC------------
Confidence            6666666655556666666666666666553221 013455566666666655 34444444444444            


Q ss_pred             CCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCC
Q psy3329         175 IDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP  254 (694)
Q Consensus       175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~  254 (694)
                                    +|++|++++|.+.+. .+..+..+++|++|++++|.+...... .+..+++|+.|++++|.+++++
T Consensus       175 --------------~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          175 --------------FLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQHILLLEI-FVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             --------------EEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSCSTTHHHH-HHHHTTTEEEEEEESCBCTTCC
T ss_pred             --------------CCCEEECCCCCcCcc-CHHHHhccccCCeecCCCCccccchhh-hhhhcccccEEECCCCcccccc
Confidence                          455555555554322 223466777778888877777554432 3355778888888888777665


Q ss_pred             ccccc---CCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhc
Q psy3329         255 ANTFH---RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQ  331 (694)
Q Consensus       255 ~~~~~---~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  331 (694)
                      ...+.   ..+.++.++++++.+.+.                   .+. ..+..+..+++|+.|++++|+++.++...|.
T Consensus       239 ~~~l~~~~~~~~l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~  298 (353)
T 2z80_A          239 FSELSTGETNSLIKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFD  298 (353)
T ss_dssp             CC------CCCCCCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccccccccccchhhccccccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCCCccCHHHHh
Confidence            33322   233445555555544431                   000 1123344555555555555555555544455


Q ss_pred             CCCCCCEEeCCCCCCcc
Q psy3329         332 NLTHLSVLELNNCGLTR  348 (694)
Q Consensus       332 ~l~~L~~L~L~~n~l~~  348 (694)
                      .+++|+.|++++|.++.
T Consensus       299 ~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          299 RLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             TCTTCCEEECCSSCBCC
T ss_pred             cCCCCCEEEeeCCCccC
Confidence            55555555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=7.6e-27  Score=232.91  Aligned_cols=235  Identities=25%  Similarity=0.417  Sum_probs=162.1

Q ss_pred             EEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcc
Q psy3329         243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL  322 (694)
Q Consensus       243 L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  322 (694)
                      ++..+.++..+|.. +  .++|++|++++|.+.+..+..+..+++|++|++++|.++.+.+..|.++++|++|+|++|.+
T Consensus        12 ~~c~~~~l~~ip~~-l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCSSCCSS-S--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCccccCCC-C--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            33444445555432 1  13566666666666665555566666666666666666666655666666666666666666


Q ss_pred             cCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhh
Q psy3329         323 ETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL  402 (694)
Q Consensus       323 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~  402 (694)
                      +++.+..|..+++|++|++++|.++.++...+.   .                                           
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~-------------------------------------------  122 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIG---H-------------------------------------------  122 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT---T-------------------------------------------
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcc---c-------------------------------------------
Confidence            666655566666666666666665554443332   2                                           


Q ss_pred             hhhcccccccCCCCCCCceEEcCCCCCcccC-CCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC----EEEccCC
Q psy3329         403 FILNETVFHENYTYPDLEELRLSGNPLHVLP-TGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT----SLNLANN  477 (694)
Q Consensus       403 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~N  477 (694)
                                   +++|++|++++|.++++. +..+  ..+++|+.|+|++|.++++++..+..+++|+    .|++++|
T Consensus       123 -------------l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          123 -------------LKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             -------------CTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             -------------CCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence                         455556666666655543 4445  6778888888888888887777776666666    8889999


Q ss_pred             ccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       478 ~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      +++++.+..+   . ..+|+.|++++|+++++++..+..+++|+.+++++|+|.|+|+ +.|+..|...
T Consensus       188 ~l~~~~~~~~---~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~  252 (276)
T 2z62_A          188 PMNFIQPGAF---K-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  252 (276)
T ss_dssp             CCCEECTTSS---C-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             cccccCcccc---C-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHh
Confidence            9888777665   3 3489999999999999888888999999999999999999997 7889999876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=8.2e-27  Score=233.87  Aligned_cols=225  Identities=27%  Similarity=0.345  Sum_probs=158.4

Q ss_pred             cEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcC
Q psy3329         216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGY  295 (694)
Q Consensus       216 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~  295 (694)
                      +.++.+++.++.++.    ...++|++|++++|.++.+++..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~----~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCc----CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            566777776666542    2246888888888888888877888888999999999988888788888899999999999


Q ss_pred             CC-CcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCc
Q psy3329         296 SN-LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH  374 (694)
Q Consensus       296 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  374 (694)
                      |. ++.+.+..|..+++|++|++++|.++++.+..+..+++|++|++++|+++.++...+.   .+++|+.|++++|.+ 
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l-  165 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR---DLGNLTHLFLHGNRI-  165 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCC-
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc---cCCCccEEECCCCcc-
Confidence            96 8888788888999999999999999988888888899999999999988887766554   455555555555544 


Q ss_pred             CCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCc
Q psy3329         375 VLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCK  454 (694)
Q Consensus       375 ~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~  454 (694)
                                                                             +++++..+  ..+++|+.|+|++|.
T Consensus       166 -------------------------------------------------------~~~~~~~~--~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          166 -------------------------------------------------------SSVPERAF--RGLHSLDRLLLHQNR  188 (285)
T ss_dssp             -------------------------------------------------------CEECTTTT--TTCTTCCEEECCSSC
T ss_pred             -------------------------------------------------------cccCHHHh--cCccccCEEECCCCc
Confidence                                                                   44333333  445555555555555


Q ss_pred             CCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329         455 IDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH  508 (694)
Q Consensus       455 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~  508 (694)
                      ++++.+..|..+++|+.|++++|+++++++..+   ..+++|+.|++++|.+..
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL---APLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH---TTCTTCCEEECCSSCEEC
T ss_pred             ccccCHhHccCcccccEeeCCCCcCCcCCHHHc---ccCcccCEEeccCCCccC
Confidence            555555555555555555555555555444444   445555555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.4e-25  Score=244.16  Aligned_cols=266  Identities=26%  Similarity=0.295  Sum_probs=143.4

Q ss_pred             CCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcE
Q psy3329         138 GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRT  217 (694)
Q Consensus       138 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  217 (694)
                      .+++.|++++|.++.++....   ++|++|++++|.++.++.      .+++|++|++++|.+ ..++.    .+++|++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~  105 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQL-TSLPV----LPPGLLE  105 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCC-SCCCC----CCTTCCE
T ss_pred             CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcC-CcCCC----CCCCCCE
Confidence            358888888888887776432   677777777777665432      345566666666655 33432    3455555


Q ss_pred             EEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCC
Q psy3329         218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN  297 (694)
Q Consensus       218 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~  297 (694)
                      |++++|.++..+.     .+++|+.|++++|+++.++.                            .+++|++|+|++|.
T Consensus       106 L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~----------------------------~l~~L~~L~Ls~N~  152 (622)
T 3g06_A          106 LSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV----------------------------LPPGLQELSVSDNQ  152 (622)
T ss_dssp             EEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC----------------------------CCTTCCEEECCSSC
T ss_pred             EECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC----------------------------CCCCCCEEECcCCc
Confidence            5555555544321     23445555555555444432                            12444444444444


Q ss_pred             CcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCC
Q psy3329         298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLP  377 (694)
Q Consensus       298 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  377 (694)
                      +++++.    .+++|+.|++++|.++.++    ..+++|+.|++++|.++.++.       ..++|+.|++++|.++.++
T Consensus       153 l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~~l~  217 (622)
T 3g06_A          153 LASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT-------LPSELYKLWAYNNRLTSLP  217 (622)
T ss_dssp             CSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSSCC
T ss_pred             CCCcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC-------ccchhhEEECcCCcccccC
Confidence            444331    2344555555555555443    223555555555555554432       2345555555555554332


Q ss_pred             CcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCc
Q psy3329         378 DSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDY  457 (694)
Q Consensus       378 ~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  457 (694)
                      ..                                    +++|+.|++++|.+++++      ..+++|+.|+|++|.|+.
T Consensus       218 ~~------------------------------------~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~  255 (622)
T 3g06_A          218 AL------------------------------------PSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTS  255 (622)
T ss_dssp             CC------------------------------------CTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSC
T ss_pred             CC------------------------------------CCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCc
Confidence            10                                    345666666666665543      224566666666666665


Q ss_pred             cCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhc
Q psy3329         458 LPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLR  515 (694)
Q Consensus       458 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~  515 (694)
                      +++    .+++|+.|+|++|+|+.+ |..+   ..+++|+.|+|++|.+++.+|..+.
T Consensus       256 lp~----~~~~L~~L~Ls~N~L~~l-p~~l---~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          256 LPM----LPSGLLSLSVYRNQLTRL-PESL---IHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             CCC----CCTTCCEEECCSSCCCSC-CGGG---GGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             CCc----ccccCcEEeCCCCCCCcC-CHHH---hhccccCEEEecCCCCCCcCHHHHH
Confidence            554    345666666666666633 3344   5566666666666666665555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=4.6e-25  Score=241.96  Aligned_cols=259  Identities=27%  Similarity=0.287  Sum_probs=216.9

Q ss_pred             cccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEe
Q psy3329         189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELD  268 (694)
Q Consensus       189 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~  268 (694)
                      +++.|++++|.+ ..+|.. +  .++|+.|++++|.++.++.     .+++|++|++++|.++.++.    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L-~~lp~~-l--~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGL-TTLPDC-L--PAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCC-SCCCSC-C--CTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCc-CccChh-h--CCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            477888888887 466643 2  2789999999998886542     56899999999999998875    678999999


Q ss_pred             CCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcc
Q psy3329         269 ISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR  348 (694)
Q Consensus       269 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  348 (694)
                      +++|.+.+...    .+++|+.|++++|.++.++.    .+++|++|+|++|.+++++.    .+.+|+.|++++|.++.
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC
Confidence            99999887544    56889999999999998774    35899999999999998764    35799999999999999


Q ss_pred             cCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCC
Q psy3329         349 LNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNP  428 (694)
Q Consensus       349 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  428 (694)
                      ++    .   .+++|+.|++++|.++.++..                                    +++|+.|++++|.
T Consensus       176 l~----~---~~~~L~~L~Ls~N~l~~l~~~------------------------------------~~~L~~L~L~~N~  212 (622)
T 3g06_A          176 LP----M---LPSGLQELSVSDNQLASLPTL------------------------------------PSELYKLWAYNNR  212 (622)
T ss_dssp             CC----C---CCTTCCEEECCSSCCSCCCCC------------------------------------CTTCCEEECCSSC
T ss_pred             Cc----c---cCCCCcEEECCCCCCCCCCCc------------------------------------cchhhEEECcCCc
Confidence            87    1   578999999999999865531                                    6789999999999


Q ss_pred             CcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329         429 LHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH  508 (694)
Q Consensus       429 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~  508 (694)
                      ++.++.      .+++|+.|+|++|.|++++    ..+++|+.|+|++|+|+.+++       .+++|+.|+|++|+|+.
T Consensus       213 l~~l~~------~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~-------~~~~L~~L~Ls~N~L~~  275 (622)
T 3g06_A          213 LTSLPA------LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM-------LPSGLLSLSVYRNQLTR  275 (622)
T ss_dssp             CSSCCC------CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCCS
T ss_pred             ccccCC------CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc-------ccccCcEEeCCCCCCCc
Confidence            997663      3578999999999999977    456899999999999997554       46799999999999996


Q ss_pred             cChhhhcCCCcccEEEccCCccccc
Q psy3329         509 ISPTVLRHNRAITSIKLVGNPWKCD  533 (694)
Q Consensus       509 ~~~~~~~~~~~l~~l~l~~N~~~c~  533 (694)
                      + |..+..+++|+.|++++|++.+.
T Consensus       276 l-p~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          276 L-PESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             C-CGGGGGSCTTCEEECCSCCCCHH
T ss_pred             C-CHHHhhccccCEEEecCCCCCCc
Confidence            5 56789999999999999999853

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=7.7e-27  Score=237.54  Aligned_cols=247  Identities=21%  Similarity=0.251  Sum_probs=154.9

Q ss_pred             cEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCC
Q psy3329         241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN  320 (694)
Q Consensus       241 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  320 (694)
                      +..+++.+.+...+...+..+++|++|++++|.+.+..+..+..+++|++|+|++|.++++.+  +..+++|++|++++|
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            333444444443333334444555555555555555555555555666666666665555443  555666666666666


Q ss_pred             cccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhh
Q psy3329         321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLV  400 (694)
Q Consensus       321 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~  400 (694)
                      .++++++     .++|+.|++++|.++.++..      .+++|+.|++++|+++.++..           .         
T Consensus        91 ~l~~l~~-----~~~L~~L~l~~n~l~~~~~~------~~~~L~~L~l~~N~l~~~~~~-----------~---------  139 (317)
T 3o53_A           91 YVQELLV-----GPSIETLHAANNNISRVSCS------RGQGKKNIYLANNKITMLRDL-----------D---------  139 (317)
T ss_dssp             EEEEEEE-----CTTCCEEECCSSCCSEEEEC------CCSSCEEEECCSSCCCSGGGB-----------C---------
T ss_pred             ccccccC-----CCCcCEEECCCCccCCcCcc------ccCCCCEEECCCCCCCCccch-----------h---------
Confidence            6555432     25666666666666655433      245566666666666533210           0         


Q ss_pred             hhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccC
Q psy3329         401 ILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLS  480 (694)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  480 (694)
                               +..   +++|+.|++++|.++++.+..+. ..+++|++|+|++|.|++++..  ..+++|++|+|++|+++
T Consensus       140 ---------~~~---l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          140 ---------EGC---RSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             ---------TGG---GSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCC
T ss_pred             ---------hhc---cCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCC
Confidence                     112   56777777777777776555441 3577888888888888877543  34788888888888888


Q ss_pred             CCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHH
Q psy3329         481 MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMW  540 (694)
Q Consensus       481 ~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~  540 (694)
                      ++++. +   ..+++|+.|++++|++++++ ..+..+++|+.+++++|++.|+|...++.
T Consensus       205 ~l~~~-~---~~l~~L~~L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          205 FMGPE-F---QSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             EECGG-G---GGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             cchhh-h---cccCcccEEECcCCcccchh-hHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            76554 5   67788888888888888654 45677888888888888888877655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.4e-26  Score=247.41  Aligned_cols=124  Identities=23%  Similarity=0.270  Sum_probs=73.7

Q ss_pred             CCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEec
Q psy3329         238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL  317 (694)
Q Consensus       238 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  317 (694)
                      ++|+.|++++|.++.+++..|..+++|+.|+|++|.+.+.++  +..+++|++|+|++|.++++++     .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            466666776666666666666666666777776666665554  5666666666666666655442     256666666


Q ss_pred             cCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCc
Q psy3329         318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLH  374 (694)
Q Consensus       318 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  374 (694)
                      ++|.++++++.   .+++|+.|++++|.++++++..+.   .+++|+.|++++|.++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~  157 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG---CRSRVQYLDLKLNEID  157 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG---GGSSEEEEECTTSCCC
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc---CCCCCCEEECCCCCCC
Confidence            66666655542   235566666666666655444443   4455555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1e-26  Score=236.58  Aligned_cols=241  Identities=22%  Similarity=0.292  Sum_probs=177.0

Q ss_pred             cCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcE
Q psy3329         235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT  314 (694)
Q Consensus       235 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  314 (694)
                      ..+++|++|++++|.++.+++..|..+++|+.|++++|.+.+..+  +..+++|++|++++|.++++.     ..++|++
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~  103 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET  103 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence            445667777777777777666667777777777777777766554  667777777777777776554     2367777


Q ss_pred             EeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcc
Q psy3329         315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK  394 (694)
Q Consensus       315 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~  394 (694)
                      |++++|.++++.+.   .+++|+.|++++|+++.+++..+.   .+++|+.|++++|.++.++.           ..+  
T Consensus       104 L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~-----------~~~--  164 (317)
T 3o53_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG---CRSRVQYLDLKLNEIDTVNF-----------AEL--  164 (317)
T ss_dssp             EECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTG---GGSSEEEEECTTSCCCEEEG-----------GGG--
T ss_pred             EECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhh---ccCCCCEEECCCCCCCcccH-----------HHH--
Confidence            77777777776653   356778888888888777666665   67788888888887764321           111  


Q ss_pred             ccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEc
Q psy3329         395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL  474 (694)
Q Consensus       395 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  474 (694)
                                     +..   +++|++|++++|.+++++...    .+++|+.|+|++|.|+++++. +..+++|+.|+|
T Consensus       165 ---------------~~~---l~~L~~L~L~~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L  221 (317)
T 3o53_A          165 ---------------AAS---SDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISL  221 (317)
T ss_dssp             ---------------GGG---TTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEEC
T ss_pred             ---------------hhc---cCcCCEEECCCCcCccccccc----ccccCCEEECCCCcCCcchhh-hcccCcccEEEC
Confidence                           112   678888899888888875443    478899999999999988776 788899999999


Q ss_pred             cCCccCCCcchhhhhhcccCCCcEEECCCCccc-ccChhhhcCCCcccEEEccCC
Q psy3329         475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLT-HISPTVLRHNRAITSIKLVGN  528 (694)
Q Consensus       475 ~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~-~~~~~~~~~~~~l~~l~l~~N  528 (694)
                      ++|+++++ |..+   ..+++|+.|++++|.++ +.++..+..++.|+.+++.++
T Consensus       222 ~~N~l~~l-~~~~---~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          222 RNNKLVLI-EKAL---RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TTSCCCEE-CTTC---CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCcccch-hhHh---hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            99999865 4445   77889999999999998 667778888888887777633

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=7.7e-27  Score=259.97  Aligned_cols=429  Identities=14%  Similarity=0.094  Sum_probs=299.5

Q ss_pred             ccCCCCCceEEECcCCCCc----------------chhhhhhcCCCCcEEEccCCcCCccChhhccC-CC-CCCeEECCC
Q psy3329          12 RNLDNPGLITINLNANPIQ----------------PVEGAFLVARSLLYLYMQECTLSKINPQFFTN-LT-TLNKLDLSG   73 (694)
Q Consensus        12 ~~~~~~~L~~L~Ls~~~l~----------------~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~-~L~~L~Ls~   73 (694)
                      .+..+++|++|+++++...                .++..+..+++|++|+|++|.++...+..+.. ++ +|++|++++
T Consensus        68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence            4567889999999774321                12233448999999999999887665666655 34 499999998


Q ss_pred             CC-CCc-cCCCCCCCCCCCCEEeCCCCcCCccC----hhhhcCCCCCCEEECCCCcCCc--cchhhhhhcCCCCCCEEEc
Q psy3329          74 NP-LRI-IEPGVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLKTLELSQNKLKS--HIDWTLVLGNLGKLDTLDL  145 (694)
Q Consensus        74 n~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~L  145 (694)
                      |. +.. ..+.....+++|++|+|++|.+++..    +..+..+++|+.|++++|.+..  ...++..+.++++|+.|++
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L  227 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV  227 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence            86 221 01111246899999999999887653    3455678999999999998873  2356667788999999999


Q ss_pred             cCCCCCCCCccccCCCCCCcEEeCCCCCCC-CcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCC
Q psy3329         146 RQSGISNLPDNVFANNTWLRNLNLAENELI-DLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP  224 (694)
Q Consensus       146 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~  224 (694)
                      ++|.+.+++ ..+..+++|++|+++..... ...........+++|+.++++++.. ..++ ..+..+++|++|++++|.
T Consensus       228 ~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~-~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          228 GDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMP-ILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             SSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGG-GGGGGGGGCCEEEETTCC
T ss_pred             cCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHH-HHHhhcCCCcEEecCCCc
Confidence            999888765 56788899999999753221 1011111112678899999988643 4444 457789999999999999


Q ss_pred             CCccchhhhccCCCCccEEEccCcCCCc-CCcccccCCCCccEEeCCC-----------CCCccc-chhhcCCCCCCcEE
Q psy3329         225 LSAADLSVALKPLTKLHRLSLRNCGLSR-LPANTFHRFTCLQELDISH-----------NPLIDA-FTALLSPLESLEHL  291 (694)
Q Consensus       225 l~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~L~~-----------n~~~~~-~~~~~~~l~~L~~L  291 (694)
                      +++......+..+++|+.|+++ +.+.. ........+++|++|++++           +.+++. +......+++|++|
T Consensus       305 l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L  383 (592)
T 3ogk_B          305 LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM  383 (592)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred             CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence            8776665556889999999998 43432 2223346788999999993           556543 33334568999999


Q ss_pred             ECcCCCCcccChhhhcC-CCCCcEEecc----CCcccCcC-----chhhcCCCCCCEEeCCCCC--CcccCccccccCCC
Q psy3329         292 DMGYSNLQRISRSTFLK-MTSLKTLILS----GNKLETLE-----SGLFQNLTHLSVLELNNCG--LTRLNETVFHENYT  359 (694)
Q Consensus       292 ~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~-----~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~  359 (694)
                      +++.+.+++.....+.. +++|+.|+++    .|.+++.+     +..+.++++|+.|+++.|.  +++.....+..  .
T Consensus       384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~--~  461 (592)
T 3ogk_B          384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ--Y  461 (592)
T ss_dssp             EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH--S
T ss_pred             EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH--h
Confidence            99888888766666654 8999999996    66777642     2336779999999998654  55432222221  4


Q ss_pred             CCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCC
Q psy3329         360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLP  439 (694)
Q Consensus       360 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  439 (694)
                      +++|+.|++++|+++..          .++..                  +.+   +++|+.|++++|.+++.....+. 
T Consensus       462 ~~~L~~L~L~~n~l~~~----------~~~~~------------------~~~---~~~L~~L~l~~n~l~~~~~~~~~-  509 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDE----------GLMEF------------------SRG---CPNLQKLEMRGCCFSERAIAAAV-  509 (592)
T ss_dssp             CTTCCEEEECSCCSSHH----------HHHHH------------------HTC---CTTCCEEEEESCCCBHHHHHHHH-
T ss_pred             CccceEeeccCCCCCHH----------HHHHH------------------Hhc---CcccCeeeccCCCCcHHHHHHHH-
Confidence            78999999999987531          11111                  122   88999999999998653222111 


Q ss_pred             cCCCCccEEEccCCcCCccCCCCC-CCCCCCCEEEccCCc
Q psy3329         440 PQLSRLRSLDLSRCKIDYLPPNVF-NNTRNITSLNLANNN  478 (694)
Q Consensus       440 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~  478 (694)
                      ..+++|+.|+|++|+++......+ ..++.+....+..++
T Consensus       510 ~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~  549 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR  549 (592)
T ss_dssp             HHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred             HhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence            568999999999999887543323 456777777666553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=4.5e-25  Score=225.09  Aligned_cols=234  Identities=21%  Similarity=0.290  Sum_probs=148.9

Q ss_pred             CCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEe
Q psy3329         237 LTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLI  316 (694)
Q Consensus       237 l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  316 (694)
                      .++++.|++++|.++.++. .+..+++|++|++++|.+. .+|..+..+++|++|+|++|.++.++ ..+.++++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP-ASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc-HHHhcCcCCCEEE
Confidence            4667777777777776664 3555777777777777776 55666677777777777777777553 4567777777777


Q ss_pred             ccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcccc
Q psy3329         317 LSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF  396 (694)
Q Consensus       317 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~  396 (694)
                      |++|.+.+..+..+..      ..+.         ..+.   .+++|+.|++++|.++.++.            .     
T Consensus       157 L~~n~~~~~~p~~~~~------~~~~---------~~~~---~l~~L~~L~L~~n~l~~lp~------------~-----  201 (328)
T 4fcg_A          157 IRACPELTELPEPLAS------TDAS---------GEHQ---GLVNLQSLRLEWTGIRSLPA------------S-----  201 (328)
T ss_dssp             EEEETTCCCCCSCSEE------EC-C---------CCEE---ESTTCCEEEEEEECCCCCCG------------G-----
T ss_pred             CCCCCCccccChhHhh------ccch---------hhhc---cCCCCCEEECcCCCcCcchH------------h-----
Confidence            7776555444433221      0000         0011   34455555555554442221            1     


Q ss_pred             chhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccC
Q psy3329         397 DFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLAN  476 (694)
Q Consensus       397 ~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  476 (694)
                                   +..   +++|++|++++|.++++++. +  ..+++|+.|+|++|.+.+..|..|.++++|+.|+|++
T Consensus       202 -------------l~~---l~~L~~L~L~~N~l~~l~~~-l--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          202 -------------IAN---LQNLKSLKIRNSPLSALGPA-I--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             -------------GGG---CTTCCEEEEESSCCCCCCGG-G--GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             -------------hcC---CCCCCEEEccCCCCCcCchh-h--ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence                         111   55666666666666665442 4  5677777777777777776666677777777777777


Q ss_pred             CccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcc
Q psy3329         477 NNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPW  530 (694)
Q Consensus       477 N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~  530 (694)
                      |++.+.+|..+   ..+++|+.|+|++|++.+.+|..+..+++++.+++..|.+
T Consensus       263 n~~~~~~p~~~---~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          263 CSNLLTLPLDI---HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCCBCCTTG---GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CCchhhcchhh---hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            77777777666   6777777777777777777777777777777777766544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.6e-27  Score=263.93  Aligned_cols=403  Identities=18%  Similarity=0.143  Sum_probs=222.8

Q ss_pred             CCCCCCEEeCCCCcCCccChhhhc-CCCCCCEEECCCC-cCCccchhhhhhcCCCCCCEEEccCCCCCCCCcccc----C
Q psy3329          86 PLTSLEYLMLNRCNLTYISPSAFD-NLNHLKTLELSQN-KLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF----A  159 (694)
Q Consensus        86 ~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~  159 (694)
                      .+++|++|+|++|.+++..+..+. .+++|+.|++++| .+.. ..++..+.++++|++|++++|.++......+    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            467788888888877766555554 5788888888877 3332 2344555678888888888887665443332    3


Q ss_pred             CCCCCcEEeCCCCC--CCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCC--Ccc---chhh
Q psy3329         160 NNTWLRNLNLAENE--LIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPL--SAA---DLSV  232 (694)
Q Consensus       160 ~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~---~~~~  232 (694)
                      .+++|++|+++++.  +... ....+...+++|++|++++|...+.+ ...+..+++|+.|+++.+..  ...   ....
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFS-ALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHH-HHHHHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHH-HHHHHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence            56688888888775  2211 11111124678888888877322232 24566788888888765532  110   0112


Q ss_pred             hccCCCCccEE-EccCcCCCcCCcccccCCCCccEEeCCCCCCccc-chhhcCCCCCCcEEECcCCCCcccCh-hhhcCC
Q psy3329         233 ALKPLTKLHRL-SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDA-FTALLSPLESLEHLDMGYSNLQRISR-STFLKM  309 (694)
Q Consensus       233 ~l~~l~~L~~L-~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l  309 (694)
                      .+..+++|+.+ .+.......++ ..+..+++|++|++++|.+.+. +...+..+++|++|++++| ++.... .....+
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~  337 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC  337 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred             HHhcCCCcccccCCcccchhhHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence            34677788877 33333222222 2234567888888888876653 2334567788888888877 332211 122357


Q ss_pred             CCCcEEeccC---------CcccCcCchhh-cCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCC--C----CCC
Q psy3329         310 TSLKTLILSG---------NKLETLESGLF-QNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS--G----NPL  373 (694)
Q Consensus       310 ~~L~~L~L~~---------n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls--~----n~l  373 (694)
                      ++|++|++.+         +.++......+ ..+++|+.|.++.|.++......+..  .+++|+.|+++  +    +.+
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l  415 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR--NRPNMTRFRLCIIEPKAPDYL  415 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH--HCTTCCEEEEEESSTTCCCTT
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh--hCCCcceeEeecccCCCcccc
Confidence            8888888733         34443222222 34678888877777776533322221  36777888777  3    333


Q ss_pred             cCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCC
Q psy3329         374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC  453 (694)
Q Consensus       374 ~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n  453 (694)
                      +..+...      .++.                  .+..   +++|+.|++++ .+++.....+. ..+++|+.|+|++|
T Consensus       416 ~~~~~~~------~~~~------------------l~~~---~~~L~~L~L~~-~l~~~~~~~l~-~~~~~L~~L~L~~~  466 (594)
T 2p1m_B          416 TLEPLDI------GFGA------------------IVEH---CKDLRRLSLSG-LLTDKVFEYIG-TYAKKMEMLSVAFA  466 (594)
T ss_dssp             TCCCTHH------HHHH------------------HHHH---CTTCCEEECCS-SCCHHHHHHHH-HHCTTCCEEEEESC
T ss_pred             cCCchhh------HHHH------------------HHhh---CCCccEEeecC-cccHHHHHHHH-HhchhccEeeccCC
Confidence            3221100      0000                  0112   56677777765 44433222220 12566777777777


Q ss_pred             cCCccCCCCC-CCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhh-cCCCcccEEEcc
Q psy3329         454 KIDYLPPNVF-NNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL-RHNRAITSIKLV  526 (694)
Q Consensus       454 ~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~-~~~~~l~~l~l~  526 (694)
                      .+++.....+ .++++|+.|+|++|.+++.....+  ...+++|+.|++++|+++......+ ..++.+....+.
T Consensus       467 ~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN--ASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT--GGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred             CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH--HHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence            6655332222 446667777777776643322211  1446666777776666643222222 334555444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.5e-25  Score=239.50  Aligned_cols=227  Identities=22%  Similarity=0.276  Sum_probs=195.9

Q ss_pred             CCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEE
Q psy3329         260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVL  339 (694)
Q Consensus       260 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  339 (694)
                      .+++|+.|+|++|.+.+..+..|..+++|++|+|++|.++++.+  +..+++|+.|+|++|.++++++     .++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            44589999999999999999999999999999999999998775  8899999999999999998765     3899999


Q ss_pred             eCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCC
Q psy3329         340 ELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL  419 (694)
Q Consensus       340 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L  419 (694)
                      ++++|.+++++..      .+++|+.|++++|.++.+++           ..                  +..   +++|
T Consensus       105 ~L~~N~l~~~~~~------~l~~L~~L~L~~N~l~~~~~-----------~~------------------~~~---l~~L  146 (487)
T 3oja_A          105 HAANNNISRVSCS------RGQGKKNIYLANNKITMLRD-----------LD------------------EGC---RSRV  146 (487)
T ss_dssp             ECCSSCCCCEEEC------CCSSCEEEECCSSCCCSGGG-----------BC------------------GGG---GSSE
T ss_pred             ECcCCcCCCCCcc------ccCCCCEEECCCCCCCCCCc-----------hh------------------hcC---CCCC
Confidence            9999999987664      46889999999999975432           11                  223   7899


Q ss_pred             ceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEE
Q psy3329         420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESL  499 (694)
Q Consensus       420 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L  499 (694)
                      +.|++++|.+++.++..+. ..+++|+.|+|++|.|+++++.  ..+++|+.|+|++|+++++++. +   ..+++|+.|
T Consensus       147 ~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~-~---~~l~~L~~L  219 (487)
T 3oja_A          147 QYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-F---QSAAGVTWI  219 (487)
T ss_dssp             EEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-G---GGGTTCSEE
T ss_pred             CEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcccccccc--ccCCCCCEEECCCCCCCCCCHh-H---cCCCCccEE
Confidence            9999999999998777661 3789999999999999998654  4689999999999999997765 5   789999999


Q ss_pred             ECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHH
Q psy3329         500 DLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADM  539 (694)
Q Consensus       500 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~  539 (694)
                      +|++|.+++++ ..+..+++|+.+++++|++.|+|...++
T Consensus       220 ~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          220 SLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             ECTTSCCCEEC-TTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             EecCCcCcccc-hhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            99999999865 4578889999999999999998765554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=8.3e-26  Score=229.36  Aligned_cols=206  Identities=19%  Similarity=0.202  Sum_probs=125.1

Q ss_pred             CCCCccEEeCCCCCCcccchhhc--CCCCCCcEEECcCCCCcccChhhhcCC-----CCCcEEeccCCcccCcCchhhcC
Q psy3329         260 RFTCLQELDISHNPLIDAFTALL--SPLESLEHLDMGYSNLQRISRSTFLKM-----TSLKTLILSGNKLETLESGLFQN  332 (694)
Q Consensus       260 ~~~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~  332 (694)
                      .+++|++|++++|.+.+.+|..+  ..+++|++|+|++|.++++ +..+..+     ++|++|+|++|++.++++..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            35555555555555555544443  5556666666666666655 3444444     66677777777666666666666


Q ss_pred             CCCCCEEeCCCCCCccc---Ccc-ccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhccc
Q psy3329         333 LTHLSVLELNNCGLTRL---NET-VFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNET  408 (694)
Q Consensus       333 l~~L~~L~L~~n~l~~~---~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~  408 (694)
                      +++|+.|++++|++.+.   +.. .+.   .+++|++|++++|+++.++         .++..+                
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~---~l~~L~~L~L~~N~l~~~~---------~~~~~~----------------  223 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPL---KFPTLQVLALRNAGMETPS---------GVCSAL----------------  223 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTT---SCTTCCEEECTTSCCCCHH---------HHHHHH----------------
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhc---cCCCCCEEECCCCcCcchH---------HHHHHH----------------
Confidence            67777777777765442   111 112   5666777777777664221         111111                


Q ss_pred             ccccCCCCCCCceEEcCCCCCcccCC-CCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhh
Q psy3329         409 VFHENYTYPDLEELRLSGNPLHVLPT-GNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSF  487 (694)
Q Consensus       409 ~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  487 (694)
                       +..   +++|+.|++++|.+++.++ ..+  ..+++|+.|+|++|.|+.++...+   ++|++|+|++|++++. |. +
T Consensus       224 -~~~---l~~L~~L~Ls~N~l~~~~~~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~  292 (312)
T 1wwl_A          224 -AAA---RVQLQGLDLSHNSLRDAAGAPSC--DWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN-PS-P  292 (312)
T ss_dssp             -HHT---TCCCSEEECTTSCCCSSCCCSCC--CCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC-CC-T
T ss_pred             -Hhc---CCCCCEEECCCCcCCcccchhhh--hhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC-hh-H
Confidence             122   5677777777777777653 333  456778888888887776655433   6777777777777776 33 4


Q ss_pred             hhhcccCCCcEEECCCCcccc
Q psy3329         488 QFLDVLLELESLDLSNNNLTH  508 (694)
Q Consensus       488 ~~l~~l~~L~~L~ls~N~l~~  508 (694)
                         ..+++|++|++++|++++
T Consensus       293 ---~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          293 ---DELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             ---TTSCEEEEEECTTCTTTC
T ss_pred             ---hhCCCCCEEeccCCCCCC
Confidence               667777777777777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=9.4e-24  Score=207.04  Aligned_cols=125  Identities=30%  Similarity=0.533  Sum_probs=113.6

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|+.|++++|.++++++..|  ..+++|++|+|++|.|+++++..|..+++|+.|+|++|+++++.+..|   ..+++
T Consensus        82 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~  156 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPLGVF--DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF---DKLTN  156 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred             CCcCCEEECCCCcccccChhHh--cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc---CcCcC
Confidence            6777788888888887777777  788999999999999999999888999999999999999999888777   88899


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccc-cCcHHHHHHHHh
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCD-CNIADMWEWATR  545 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~-c~~~~~~~~~~~  545 (694)
                      |++|+|++|+++++++..+..+++|+.+++++|+|.|+ |.+.|+..|...
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~  207 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE  207 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHH
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHh
Confidence            99999999999999988899999999999999999999 999999999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=3.6e-24  Score=218.47  Aligned_cols=227  Identities=22%  Similarity=0.249  Sum_probs=149.5

Q ss_pred             CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEE
Q psy3329         213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD  292 (694)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  292 (694)
                      ++++.|++++|.++..+.  .+..+++|++|++++|.++.++ ..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPD--QAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSSCCS--CGGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCchhcCh--hhhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            556666666666553332  2344566666666666666444 34566666666666666665 4455566666666666


Q ss_pred             CcCCCCcccChhhh---------cCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCC
Q psy3329         293 MGYSNLQRISRSTF---------LKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL  363 (694)
Q Consensus       293 L~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  363 (694)
                      |++|.+.+..+..+         .++++|++|+|++|.++.++. .+..+++|+.|++++|.+++++.. +         
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~~~-l---------  225 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGPA-I---------  225 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCCCCGG-G---------
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCcCchh-h---------
Confidence            66655444333333         335556666666665554432 245555555555555555544332 1         


Q ss_pred             CeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCC
Q psy3329         364 EELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLS  443 (694)
Q Consensus       364 ~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~  443 (694)
                                                                     ..   +++|+.|++++|.+.+..+..+  ..++
T Consensus       226 -----------------------------------------------~~---l~~L~~L~Ls~n~~~~~~p~~~--~~l~  253 (328)
T 4fcg_A          226 -----------------------------------------------HH---LPKLEELDLRGCTALRNYPPIF--GGRA  253 (328)
T ss_dssp             -----------------------------------------------GG---CTTCCEEECTTCTTCCBCCCCT--TCCC
T ss_pred             -----------------------------------------------cc---CCCCCEEECcCCcchhhhHHHh--cCCC
Confidence                                                           11   6677777777777777777777  8889


Q ss_pred             CccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCccccc
Q psy3329         444 RLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI  509 (694)
Q Consensus       444 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~  509 (694)
                      +|+.|+|++|.+.+..|..+.++++|+.|+|++|++.+.+|..+   ..+++|+.+++..|.+...
T Consensus       254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l---~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI---AQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG---GGSCTTCEEECCGGGSCC-
T ss_pred             CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH---hhccCceEEeCCHHHHHHH
Confidence            99999999998888888788999999999999999999999888   8899999999887765443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=8e-26  Score=229.47  Aligned_cols=252  Identities=23%  Similarity=0.225  Sum_probs=127.2

Q ss_pred             hcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCcc-CCCCCC-------CCCCCCEEeCCCCcCCccChhhh
Q psy3329          37 LVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII-EPGVFD-------PLTSLEYLMLNRCNLTYISPSAF  108 (694)
Q Consensus        37 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l  108 (694)
                      +..++|++|++++|.+ .+ |..+...  |+.|++++|.+... .+..+.       ++++|++|++++|.+++..|..+
T Consensus        40 ~~~~~L~~l~l~~n~l-~~-p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-AD-LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CC-CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc-cc-HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3444555555555555 33 3323222  55556665555321 111111       35666666666666665545544


Q ss_pred             --cCCCCCCEEECCCCcCCccchhhhhhcCC-----CCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcc-hh
Q psy3329         109 --DNLNHLKTLELSQNKLKSHIDWTLVLGNL-----GKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD-VA  180 (694)
Q Consensus       109 --~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~  180 (694)
                        ..+++|++|++++|.++..+   ..++.+     ++|++|++++|.+..+++..+..+++|++|++++|.+.+.. ..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATRD---AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSSS---SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcchh---HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence              56666666666666665432   233333     77777777777777777777778888888888887754321 11


Q ss_pred             hhc-ccCCCcccEEeCCCCCCCC--CCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCccc
Q psy3329         181 TTL-GQNLVHLDSLDLSNCHLKG--PLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANT  257 (694)
Q Consensus       181 ~~~-~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~  257 (694)
                      ... ...+++|++|++++|.+.+  .++...+..+++|+.|++++|.+++..+.                        ..
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------~~  248 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA------------------------PS  248 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC------------------------SC
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch------------------------hh
Confidence            111 0134444555554444421  11122233444444444444444433211                        22


Q ss_pred             ccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccC
Q psy3329         258 FHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLET  324 (694)
Q Consensus       258 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  324 (694)
                      +..+++|+.|++++|.++ .+|..+.  ++|++|+|++|++++++.  +..+++|++|++++|.+++
T Consensus       249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTC
T ss_pred             hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCC
Confidence            333444555555555444 2222222  455555555555555521  5555555555555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=5.7e-23  Score=203.83  Aligned_cols=202  Identities=28%  Similarity=0.426  Sum_probs=114.0

Q ss_pred             ccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccC
Q psy3329         240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG  319 (694)
Q Consensus       240 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  319 (694)
                      .+.+++++++++.+|.. +  .++++.|++++|.+.+..+..|..+++|++|+|++|.++.+++..|.++++|++|++++
T Consensus        18 ~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            44555555555554421 1  13455555555555544444455555555555555555555544445555555555555


Q ss_pred             CcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchh
Q psy3329         320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL  399 (694)
Q Consensus       320 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l  399 (694)
                      |.+..+++..|..+++|+.|++++|.++.+++..|.   .                                        
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~----------------------------------------  131 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD---S----------------------------------------  131 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT---T----------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC---c----------------------------------------
Confidence            555555544445555555555555555444433332   2                                        


Q ss_pred             hhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCcc
Q psy3329         400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL  479 (694)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  479 (694)
                                      +++|+.|++++|.++++++..|  ..+++|+.|+|++|.++++++..|.++++|++|+|++|++
T Consensus       132 ----------------l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          132 ----------------LTKLTYLSLGYNELQSLPKGVF--DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             ----------------CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ----------------CcCCCEEECCCCcCCccCHhHc--cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence                            4555566666666665555555  5666677777777777666666666667777777777777


Q ss_pred             CCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329         480 SMTSELSFQFLDVLLELESLDLSNNNLTH  508 (694)
Q Consensus       480 ~~~~~~~~~~l~~l~~L~~L~ls~N~l~~  508 (694)
                      +++++..|   ..+++|+.|+|++|.+..
T Consensus       194 ~~~~~~~~---~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          194 KRVPEGAF---DSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             SCCCTTTT---TTCTTCCEEECCSSCBCC
T ss_pred             CcCCHHHh---ccccCCCEEEecCCCeeC
Confidence            66666555   566677777777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.5e-23  Score=208.28  Aligned_cols=125  Identities=34%  Similarity=0.594  Sum_probs=109.2

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|++|++++|.++++++..+  ..+++|++|++++|.++++++..|..+++|+.|++++|++++..+..+   ..+++
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~  182 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF---DKLTQ  182 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred             CcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh---cCCcc
Confidence            6677777777777777777777  788999999999999999998888999999999999999998888777   78899


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      |+.|++++|++++.++..+..+++|+.+++++|+|.|+|+ +.++..|...
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~  233 (272)
T 3rfs_A          183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK  233 (272)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHh
Confidence            9999999999999988888999999999999999999997 5667777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.8e-23  Score=207.05  Aligned_cols=210  Identities=23%  Similarity=0.311  Sum_probs=135.2

Q ss_pred             CCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEec
Q psy3329         238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL  317 (694)
Q Consensus       238 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  317 (694)
                      ++|++|++++|+++.+++..|..+++|+.|++++|.+.+..+..+..+++|++|+|++|.++.+.+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45777777777777766666777777777777777777766666777777777777777777777777777777777777


Q ss_pred             cCCcccCcCchhhcCCCCCCEEeCCCCCCcccC-ccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcccc
Q psy3329         318 SGNKLETLESGLFQNLTHLSVLELNNCGLTRLN-ETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNF  396 (694)
Q Consensus       318 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~  396 (694)
                      ++|.+..+.+..+..+++|++|++++|.++.+. +..+.   .+++|+.|++++|+++.++..            .    
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~---~l~~L~~L~Ls~N~l~~~~~~------------~----  168 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSIYCT------------D----  168 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECCSSCCCEECGG------------G----
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhc---cCCCCCEEECCCCCCCcCCHH------------H----
Confidence            777777776666777778888888877777643 33444   556666666666666533210            0    


Q ss_pred             chhhhhhhhcccccccCCCCCCCc-eEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329         397 DFLVILFILNETVFHENYTYPDLE-ELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA  475 (694)
Q Consensus       397 ~~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  475 (694)
                                   +.....++.+. .|++++|.++++++..+  . ..+|+.|+|++|.++++++..|..+++|+.|+|+
T Consensus       169 -------------~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          169 -------------LRVLHQMPLLNLSLDLSLNPMNFIQPGAF--K-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             -------------GHHHHTCTTCCEEEECCSSCCCEECTTSS--C-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred             -------------hhhhhhccccceeeecCCCcccccCcccc--C-CCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence                         11100022222 56666666666665554  2 2356666666666666666666666666666666


Q ss_pred             CCccCCC
Q psy3329         476 NNNLSMT  482 (694)
Q Consensus       476 ~N~l~~~  482 (694)
                      +|.+++.
T Consensus       233 ~N~~~c~  239 (276)
T 2z62_A          233 TNPWDCS  239 (276)
T ss_dssp             SSCBCCC
T ss_pred             CCccccc
Confidence            6666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.90  E-value=2.6e-23  Score=198.99  Aligned_cols=126  Identities=29%  Similarity=0.431  Sum_probs=119.0

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|+.|+|++|.++++.+..|  ..+++|++|+|++|.|+.+++..|.++++|+.|+|++|+++++.+..|   ..+++
T Consensus        55 l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~  129 (220)
T 2v9t_B           55 YKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF---QDLHN  129 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred             CCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc---CCCCC
Confidence            7889999999999999988888  899999999999999999999999999999999999999999999888   88999


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~  546 (694)
                      |+.|+|++|+++++++..+..+++|+.+++++|+|.|+|++.|+..|....
T Consensus       130 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~  180 (220)
T 2v9t_B          130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTN  180 (220)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred             CCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhC
Confidence            999999999999999988999999999999999999999999999998763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.6e-23  Score=207.88  Aligned_cols=208  Identities=26%  Similarity=0.380  Sum_probs=132.9

Q ss_pred             CCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEE
Q psy3329         236 PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL  315 (694)
Q Consensus       236 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  315 (694)
                      .+++|+.|++++|.++.++  .+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.++++.+..|.++++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            3455556666655555543  244555666666666555442  234555555555555555555555555555555555


Q ss_pred             eccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccc
Q psy3329         316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKN  395 (694)
Q Consensus       316 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~  395 (694)
                      ++++|.++++++..|..+++|+.|++++|.++.+++..+.                                        
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------------------------------------  154 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD----------------------------------------  154 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------------------------
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc----------------------------------------
Confidence            5555555555554455555555555555555444433222                                        


Q ss_pred             cchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329         396 FDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA  475 (694)
Q Consensus       396 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  475 (694)
                                      .   +++|+.|++++|.++++++..+  ..+++|+.|+|++|.++++++..|..+++|+.|+++
T Consensus       155 ----------------~---l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          155 ----------------K---LTNLTELDLSYNQLQSLPEGVF--DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             ----------------T---CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ----------------c---CccCCEEECCCCCcCccCHHHh--cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence                            1   6667777777777777777666  778888888888888888888888888889999998


Q ss_pred             CCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCC
Q psy3329         476 NNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNR  518 (694)
Q Consensus       476 ~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~  518 (694)
                      +|.+.+          .++.|+.++++.|+++|.+|..+..++
T Consensus       214 ~N~~~~----------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          214 DNPWDC----------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             SSCBCC----------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCCccc----------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            888774          345677788888888888887665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=1.3e-24  Score=242.07  Aligned_cols=352  Identities=16%  Similarity=0.106  Sum_probs=217.0

Q ss_pred             CCCCCceEEECcCCCCcchh-hhhh-cCCCCcEEEccCC-cCCcc-ChhhccCCCCCCeEECCCCCCCccCCCC----CC
Q psy3329          14 LDNPGLITINLNANPIQPVE-GAFL-VARSLLYLYMQEC-TLSKI-NPQFFTNLTTLNKLDLSGNPLRIIEPGV----FD   85 (694)
Q Consensus        14 ~~~~~L~~L~Ls~~~l~~i~-~~~~-~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~----~~   85 (694)
                      ..+++|++|+|+++.++... ..+. .+++|++|++++| .++.. .+..+..+++|++|++++|.++......    ..
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            35678888888888777433 4443 6788888888877 44432 1333457888888888888765433222    23


Q ss_pred             CCCCCCEEeCCCCcCCccChhh----hcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCC------------
Q psy3329          86 PLTSLEYLMLNRCNLTYISPSA----FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSG------------  149 (694)
Q Consensus        86 ~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~------------  149 (694)
                      .+++|++|++++|. ..+....    +.++++|+.|++++|..  ...++..+.++++|++|+++.+.            
T Consensus       182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  258 (594)
T 2p1m_B          182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVP--LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS  258 (594)
T ss_dssp             TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSC--HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred             cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCc--HHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence            56788888888876 2222222    24568888888887722  12356667777777777765442            


Q ss_pred             --------------CCCCCcccc----CCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhc
Q psy3329         150 --------------ISNLPDNVF----ANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN  211 (694)
Q Consensus       150 --------------i~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  211 (694)
                                    +.......+    ..+++|++|++++|.+......... ..+++|++|++++| +...........
T Consensus       259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~-~~~~~L~~L~l~~~-~~~~~l~~l~~~  336 (594)
T 2p1m_B          259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL-CQCPKLQRLWVLDY-IEDAGLEVLAST  336 (594)
T ss_dssp             HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH-TTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred             HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH-hcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence                          111111111    2457777788877775543222222 26777888887776 321111122235


Q ss_pred             CCCCcEEEc---------CCCCCCccchhhhccCCCCccEEEccCcCCCcCCccccc-CCCCccEEeCC--C----CCCc
Q psy3329         212 ATKLRTLYL---------SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH-RFTCLQELDIS--H----NPLI  275 (694)
Q Consensus       212 ~~~L~~L~L---------~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~~~~L~~L~L~--~----n~~~  275 (694)
                      +++|+.|++         ..+.+++.........+++|+.|.+..+.++......+. .+++|+.|+++  +    +.++
T Consensus       337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~  416 (594)
T 2p1m_B          337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT  416 (594)
T ss_dssp             CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred             CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence            778888877         334555544443334577888887777777754433443 47788888887  3    4444


Q ss_pred             c-----cchhhcCCCCCCcEEECcCCCCcccChhhhcC-CCCCcEEeccCCcccCcCchhh-cCCCCCCEEeCCCCCCcc
Q psy3329         276 D-----AFTALLSPLESLEHLDMGYSNLQRISRSTFLK-MTSLKTLILSGNKLETLESGLF-QNLTHLSVLELNNCGLTR  348 (694)
Q Consensus       276 ~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~  348 (694)
                      +     .++..+..+++|++|+|++ .++......+.. +++|+.|+|++|.+++.....+ ..+++|+.|++++|.++.
T Consensus       417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            2     2233356677888888876 555444444444 7888888888888765544434 567888888888888855


Q ss_pred             cCcc-ccccCCCCCCCCeeeCCCCCCc
Q psy3329         349 LNET-VFHENYTYPDLEELRLSGNPLH  374 (694)
Q Consensus       349 ~~~~-~~~~~~~~~~L~~L~Ls~n~l~  374 (694)
                      .... ...   .+++|+.|++++|+++
T Consensus       496 ~~~~~~~~---~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          496 KALLANAS---KLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHTGG---GGGGSSEEEEESSCCB
T ss_pred             HHHHHHHH---hCCCCCEEeeeCCCCC
Confidence            3322 222   5788888888888763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.89  E-value=9.8e-23  Score=194.96  Aligned_cols=126  Identities=21%  Similarity=0.475  Sum_probs=119.8

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|+.|++++|.++++++..|  ..+++|++|+|++|.|+++++..|.++++|++|+|++|+++++.|..|   ..+++
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~  130 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAF--EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF---IGLSS  130 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS---TTCTT
T ss_pred             CCCCCEEECCCCcCCEECHHHh--CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc---CCCcc
Confidence            7889999999999999998888  899999999999999999999999999999999999999999999888   88999


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~  546 (694)
                      |+.|+|++|++++++|..+..+++|+.+++++|+|.|+|++.|+..|....
T Consensus       131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~  181 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKK  181 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHS
T ss_pred             CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=7.7e-22  Score=197.26  Aligned_cols=203  Identities=27%  Similarity=0.292  Sum_probs=117.3

Q ss_pred             cCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcE
Q psy3329         235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT  314 (694)
Q Consensus       235 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  314 (694)
                      ..+++++++++++++++.++...   .++++.|++++|.+.+..+..+..+++|++|+|++|.++.+...  ..+++|+.
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            44455666666666666555322   14556666666666555555555556666666666655554432  44555555


Q ss_pred             EeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcc
Q psy3329         315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK  394 (694)
Q Consensus       315 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~  394 (694)
                      |++++|.+..++. .+..+++|+.|++++|+++.+++..|.   .                                   
T Consensus        82 L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~---~-----------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALR---G-----------------------------------  122 (290)
T ss_dssp             EECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTT---T-----------------------------------
T ss_pred             EECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHc---C-----------------------------------
Confidence            5555555554432 234445555555555555544443333   2                                   


Q ss_pred             ccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEc
Q psy3329         395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL  474 (694)
Q Consensus       395 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  474 (694)
                                           +++|+.|++++|.++++++..|  ..+++|+.|+|++|+|+++++..|..+++|+.|+|
T Consensus       123 ---------------------l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          123 ---------------------LGELQELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (290)
T ss_dssp             ---------------------CTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ---------------------CCCCCEEECCCCCCCccChhhc--ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence                                 5556666666666666666555  56667777777777777776666666777777777


Q ss_pred             cCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329         475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH  508 (694)
Q Consensus       475 ~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~  508 (694)
                      ++|+++.+++..    ...++|+.|+|++|.+..
T Consensus       180 ~~N~l~~ip~~~----~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          180 QENSLYTIPKGF----FGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CSSCCCCCCTTT----TTTCCCSEEECCSCCBCC
T ss_pred             CCCcCCccChhh----cccccCCeEEeCCCCccC
Confidence            777776554433    345567777777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.89  E-value=5.2e-23  Score=213.11  Aligned_cols=128  Identities=30%  Similarity=0.396  Sum_probs=105.7

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|+.|+|++|.++.+++..|  ..+++|+.|+|++|.|+++.+..|.++++|+.|+|++|+|+++++..|..+..+++
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~  164 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK  164 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred             CCCCCEEECCCCcCCcCCHHHh--CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence            6677777777777777777777  78889999999999999988888999999999999999999887776644456889


Q ss_pred             CcEEECCCCcccccChhhhcCCCc--ccEEEccCCccccccCcHHH-HHHHHh
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRA--ITSIKLVGNPWKCDCNIADM-WEWATR  545 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~--l~~l~l~~N~~~c~c~~~~~-~~~~~~  545 (694)
                      |+.|+|++|+|+++++..+..++.  ++.+++++|||.|+|.+.|+ ..|...
T Consensus       165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~  217 (361)
T 2xot_A          165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR  217 (361)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHT
T ss_pred             CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHh
Confidence            999999999999988888888877  48899999999999999886 567754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=9.5e-23  Score=198.40  Aligned_cols=199  Identities=16%  Similarity=0.248  Sum_probs=125.3

Q ss_pred             CccEEeCCCCCCcccchhhcCCCCCCcEEECcCCC-CcccChhhhcCCCCCcEEeccC-CcccCcCchhhcCCCCCCEEe
Q psy3329         263 CLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN-LQRISRSTFLKMTSLKTLILSG-NKLETLESGLFQNLTHLSVLE  340 (694)
Q Consensus       263 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~  340 (694)
                      +|+.|++++|.+.+..+..|..+++|++|++++|. ++.+.+..|.++++|++|++++ |.++.+++..|..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666666655566666666666666664 6666655666666666666666 666666655566666666666


Q ss_pred             CCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCc
Q psy3329         341 LNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLE  420 (694)
Q Consensus       341 L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~  420 (694)
                      +++|+++.++.  |.   .+++|+                                                     .|+
T Consensus       112 l~~n~l~~lp~--~~---~l~~L~-----------------------------------------------------~L~  133 (239)
T 2xwt_C          112 IFNTGLKMFPD--LT---KVYSTD-----------------------------------------------------IFF  133 (239)
T ss_dssp             EEEECCCSCCC--CT---TCCBCC-----------------------------------------------------SEE
T ss_pred             CCCCCCccccc--cc---cccccc-----------------------------------------------------ccc
Confidence            66666555443  22   222222                                                     122


Q ss_pred             eEEcCCC-CCcccCCCCCCCcCCCCcc-EEEccCCcCCccCCCCCCCCCCCCEEEccCCc-cCCCcchhhhhhccc-CCC
Q psy3329         421 ELRLSGN-PLHVLPTGNLLPPQLSRLR-SLDLSRCKIDYLPPNVFNNTRNITSLNLANNN-LSMTSELSFQFLDVL-LEL  496 (694)
Q Consensus       421 ~L~Ls~n-~l~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~l-~~L  496 (694)
                      .|++++| .++++++..|  ..+++|+ .|++++|+++.+++..|.. ++|+.|++++|+ ++++.+..|   ..+ ++|
T Consensus       134 ~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~---~~l~~~L  207 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAF---GGVYSGP  207 (239)
T ss_dssp             EEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTT---TTCSBCC
T ss_pred             EEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHh---hccccCC
Confidence            6666666 6666666666  6677777 7777777777766666655 677777777773 776666666   566 677


Q ss_pred             cEEECCCCcccccChhhhcCCCcccEEEccCC
Q psy3329         497 ESLDLSNNNLTHISPTVLRHNRAITSIKLVGN  528 (694)
Q Consensus       497 ~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N  528 (694)
                      +.|++++|+++++++.   .+++|+.|++.++
T Consensus       208 ~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          208 SLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             SEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             cEEECCCCccccCChh---HhccCceeeccCc
Confidence            7777777777766554   3556666766654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.8e-22  Score=195.10  Aligned_cols=197  Identities=16%  Similarity=0.250  Sum_probs=152.8

Q ss_pred             CCccEEEccCcCCCcCCcccccCCCCccEEeCCCCC-CcccchhhcCCCCCCcEEECcC-CCCcccChhhhcCCCCCcEE
Q psy3329         238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP-LIDAFTALLSPLESLEHLDMGY-SNLQRISRSTFLKMTSLKTL  315 (694)
Q Consensus       238 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  315 (694)
                      ++|+.|++++|+++.+++..|..+++|+.|++++|. +....+..|..+++|++|++++ |.++.+++..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            589999999999999998889999999999999997 8888777899999999999998 99999999999999999999


Q ss_pred             eccCCcccCcCchhhcCCCCCC---EEeCCCC-CCcccCccccccCCCCCCCC-eeeCCCCCCcCCCCcccccccccccc
Q psy3329         316 ILSGNKLETLESGLFQNLTHLS---VLELNNC-GLTRLNETVFHENYTYPDLE-ELRLSGNPLHVLPDSTKQYSMRTIPT  390 (694)
Q Consensus       316 ~L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~~~ip~  390 (694)
                      ++++|.+++++.  +..+++|+   .|++++| .++.++...|.   .+++|+ .|++++|+                  
T Consensus       111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~---~l~~L~~~L~l~~n~------------------  167 (239)
T 2xwt_C          111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ---GLCNETLTLKLYNNG------------------  167 (239)
T ss_dssp             EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT---TTBSSEEEEECCSCC------------------
T ss_pred             eCCCCCCccccc--cccccccccccEEECCCCcchhhcCccccc---chhcceeEEEcCCCC------------------
Confidence            999999999775  78888888   9999999 88888776665   445555 55555554                  


Q ss_pred             hhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCc-CCccCCCCCCCC-CC
Q psy3329         391 QIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCK-IDYLPPNVFNNT-RN  468 (694)
Q Consensus       391 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~  468 (694)
                                                            ++.+++..|  .. ++|+.|+|++|+ ++++++..|.++ ++
T Consensus       168 --------------------------------------l~~i~~~~~--~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~  206 (239)
T 2xwt_C          168 --------------------------------------FTSVQGYAF--NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG  206 (239)
T ss_dssp             --------------------------------------CCEECTTTT--TT-CEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred             --------------------------------------CcccCHhhc--CC-CCCCEEEcCCCCCcccCCHHHhhccccC
Confidence                                                  444444444  33 566666666663 666666666666 66


Q ss_pred             CCEEEccCCccCCCcchhhhhhcccCCCcEEECCCC
Q psy3329         469 ITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNN  504 (694)
Q Consensus       469 L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N  504 (694)
                      |+.|++++|+++++++.      .+++|+.|+++++
T Consensus       207 L~~L~l~~N~l~~l~~~------~~~~L~~L~l~~~  236 (239)
T 2xwt_C          207 PSLLDVSQTSVTALPSK------GLEHLKELIARNT  236 (239)
T ss_dssp             CSEEECTTCCCCCCCCT------TCTTCSEEECTTC
T ss_pred             CcEEECCCCccccCChh------HhccCceeeccCc
Confidence            66666666666655442      3456666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=3.5e-22  Score=201.92  Aligned_cols=193  Identities=21%  Similarity=0.351  Sum_probs=109.6

Q ss_pred             CCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEE
Q psy3329         236 PLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL  315 (694)
Q Consensus       236 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  315 (694)
                      .+++|+.|++++|.++.++  .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++.+.  .+..+++|+.|
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEE
Confidence            3455666666666655554  35556666666666666555443  556666666666666665553  45566666666


Q ss_pred             eccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccc
Q psy3329         316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKN  395 (694)
Q Consensus       316 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~  395 (694)
                      ++++|.++++++  +..+++|+.|++++|.++.++.  +.   .+++|+.|++++|.++.++.                 
T Consensus       113 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~---~l~~L~~L~l~~n~l~~~~~-----------------  168 (308)
T 1h6u_A          113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LA---GLTNLQYLSIGNAQVSDLTP-----------------  168 (308)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GG---GCTTCCEEECCSSCCCCCGG-----------------
T ss_pred             ECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--cc---CCCCccEEEccCCcCCCChh-----------------
Confidence            666666666543  5666666666666666665543  22   45555555555555543221                 


Q ss_pred             cchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q psy3329         396 FDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLA  475 (694)
Q Consensus       396 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  475 (694)
                                    +..   +++|+.|++++|.++++++  +  ..+++|+.|+|++|.++++++  +..+++|+.|+++
T Consensus       169 --------------l~~---l~~L~~L~l~~n~l~~~~~--l--~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~  225 (308)
T 1h6u_A          169 --------------LAN---LSKLTTLKADDNKISDISP--L--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (308)
T ss_dssp             --------------GTT---CTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             --------------hcC---CCCCCEEECCCCccCcChh--h--cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence                          111   5555556666665555543  3  455666666666666665553  4556666666666


Q ss_pred             CCccCC
Q psy3329         476 NNNLSM  481 (694)
Q Consensus       476 ~N~l~~  481 (694)
                      +|.+++
T Consensus       226 ~N~i~~  231 (308)
T 1h6u_A          226 NQTITN  231 (308)
T ss_dssp             EEEEEC
T ss_pred             CCeeec
Confidence            666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3.6e-23  Score=214.60  Aligned_cols=271  Identities=19%  Similarity=0.194  Sum_probs=135.4

Q ss_pred             EEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCc----ccccCCC-CccEEeCCCCCCcccchhhcCCC-----CC
Q psy3329         218 LYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA----NTFHRFT-CLQELDISHNPLIDAFTALLSPL-----ES  287 (694)
Q Consensus       218 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~l-----~~  287 (694)
                      +.+++|.+++..+. ++...++|++|++++|.++..+.    ..+..++ +|++|++++|.+.+..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            44555555544322 23444446666666666665554    4444555 55555555555555433333322     55


Q ss_pred             CcEEECcCCCCcccChhhhc----CC-CCCcEEeccCCcccCcCchhh----cC-CCCCCEEeCCCCCCcccCccccccC
Q psy3329         288 LEHLDMGYSNLQRISRSTFL----KM-TSLKTLILSGNKLETLESGLF----QN-LTHLSVLELNNCGLTRLNETVFHEN  357 (694)
Q Consensus       288 L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~~~~~~~  357 (694)
                      |++|+|++|.++...+..+.    .+ ++|++|+|++|.++......+    .. .++|++|++++|.++......+   
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l---  158 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL---  158 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH---
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH---
Confidence            55555555555544433222    22 455555555555554443322    12 2345555555554443222111   


Q ss_pred             CCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCC-CCCceEEcCCCCCcccCCCC
Q psy3329         358 YTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTY-PDLEELRLSGNPLHVLPTGN  436 (694)
Q Consensus       358 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~  436 (694)
                                                     +..+                  ..   + ++|++|++++|.+++..+..
T Consensus       159 -------------------------------~~~l------------------~~---~~~~L~~L~Ls~n~l~~~~~~~  186 (362)
T 3goz_A          159 -------------------------------IQIL------------------AA---IPANVNSLNLRGNNLASKNCAE  186 (362)
T ss_dssp             -------------------------------HHHH------------------HT---SCTTCCEEECTTSCGGGSCHHH
T ss_pred             -------------------------------HHHH------------------hc---CCccccEeeecCCCCchhhHHH
Confidence                                           1100                  00   2 25566666666555544322


Q ss_pred             CC--CcCC-CCccEEEccCCcCCccCC----CCCCC-CCCCCEEEccCCccCCCcchhhh-hhcccCCCcEEECCCCccc
Q psy3329         437 LL--PPQL-SRLRSLDLSRCKIDYLPP----NVFNN-TRNITSLNLANNNLSMTSELSFQ-FLDVLLELESLDLSNNNLT  507 (694)
Q Consensus       437 ~~--~~~l-~~L~~L~Ls~n~l~~~~~----~~~~~-l~~L~~L~L~~N~l~~~~~~~~~-~l~~l~~L~~L~ls~N~l~  507 (694)
                      +.  ...+ ++|+.|+|++|.|+....    ..+.. .++|++|+|++|.+++..+..+. .+..+++|+.|+|++|.+.
T Consensus       187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence            10  0223 366677777776665211    12222 34677777777777665543331 1255667777777777755


Q ss_pred             ccChh-------hhcCCCcccEEEccCCccccccCcHHHHHHHHh
Q psy3329         508 HISPT-------VLRHNRAITSIKLVGNPWKCDCNIADMWEWATR  545 (694)
Q Consensus       508 ~~~~~-------~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~  545 (694)
                      ++.+.       .+..+++|+.+++++|++....+. .+..|.+.
T Consensus       267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~-~~~~~l~~  310 (362)
T 3goz_A          267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI-PISNLIRE  310 (362)
T ss_dssp             TCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH-HHHHHHHH
T ss_pred             ccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH-HHHHHHHH
Confidence            54432       445667788888888887765333 33444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.5e-21  Score=197.33  Aligned_cols=104  Identities=24%  Similarity=0.390  Sum_probs=65.9

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|+.|++++|.++++++  +  ..+++|+.|+|++|.++++++  +..+++|+.|++++|+++++.+  +   ..+++
T Consensus       128 l~~L~~L~l~~n~l~~~~~--l--~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l---~~l~~  196 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITNISP--L--AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--L---ASLPN  196 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G---GGCTT
T ss_pred             CCCCCEEECCCCccCcCcc--c--cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--h---cCCCC
Confidence            5556666666666555544  3  556666666666666666554  5666667777777776666544  3   56667


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c  532 (694)
                      |++|++++|++++.++  +..+++|+.+++++|++.+
T Consensus       197 L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            7777777777766543  5666677777777776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.9e-21  Score=188.33  Aligned_cols=180  Identities=28%  Similarity=0.459  Sum_probs=97.9

Q ss_pred             CccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEecc
Q psy3329         239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS  318 (694)
Q Consensus       239 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  318 (694)
                      ..+.++++++.++.++... .  ++++.|++++|.+.+..+..+..+++|++|+|++|.++.+.+..|..+++|+.|+|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~-~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI-P--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC-C--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCCC-C--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3445555555555554321 1  344555555555544444444444444444444444444444444444444444444


Q ss_pred             CCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccch
Q psy3329         319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDF  398 (694)
Q Consensus       319 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~  398 (694)
                      +|.++.+++..|..+++|++|++++|+++.++...|.                                           
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------------------------------------------  128 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD-------------------------------------------  128 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------------------------------------------
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhc-------------------------------------------
Confidence            4444444444444444444444444444333322221                                           


Q ss_pred             hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q psy3329         399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN  478 (694)
Q Consensus       399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  478 (694)
                                   .   +++|+.|++++|.++++++..|  ..+++|+.|+|++|.|+++++..|..+++|+.|+|++|.
T Consensus       129 -------------~---l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          129 -------------R---LTKLKELRLNTNQLQSIPAGAF--DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             -------------T---CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             -------------c---CCcccEEECcCCcCCccCHHHc--CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence                         1   5566666666666666666666  667777777777777777777777777777777777777


Q ss_pred             cCCC
Q psy3329         479 LSMT  482 (694)
Q Consensus       479 l~~~  482 (694)
                      +++.
T Consensus       191 ~~c~  194 (251)
T 3m19_A          191 FDCS  194 (251)
T ss_dssp             BCTT
T ss_pred             eeCC
Confidence            7665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=1.3e-21  Score=201.76  Aligned_cols=243  Identities=19%  Similarity=0.271  Sum_probs=144.2

Q ss_pred             EEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCc-ccChhhhcCCCCCcE-EeccCC
Q psy3329         243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ-RISRSTFLKMTSLKT-LILSGN  320 (694)
Q Consensus       243 L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~-L~L~~n  320 (694)
                      ++.++++++.+|...   .+++++|+|++|+++...+.+|.++++|++|+|++|.+. .+++.+|.+++++.+ +.+..|
T Consensus        14 v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            444444454444221   134555555555555444444555555555555555543 233444555555443 334445


Q ss_pred             cccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCC-CCCcCCCCcccccccccccchhccccchh
Q psy3329         321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSG-NPLHVLPDSTKQYSMRTIPTQIWKNFDFL  399 (694)
Q Consensus       321 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~~~~ip~~~~~~~~~l  399 (694)
                      +++.+++..|..+++|++|++++|+++.++...+.   ....+..+++.+ +.+..++.            ..       
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~l~~l~l~~~~~i~~l~~------------~~-------  148 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI---HSLQKVLLDIQDNINIHTIER------------NS-------  148 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC---CBSSCEEEEEESCTTCCEECT------------TS-------
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhc---ccchhhhhhhccccccccccc------------cc-------
Confidence            55555555555556666666666655555544433   344455555543 33432221            11       


Q ss_pred             hhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEcc-CCcCCccCCCCCCCCCCCCEEEccCCc
Q psy3329         400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLS-RCKIDYLPPNVFNNTRNITSLNLANNN  478 (694)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~N~  478 (694)
                                |.+  ....++.|++++|.++.+++..|   ...+|+.|+++ +|.++.+++.+|.++++|+.|+|++|+
T Consensus       149 ----------f~~--~~~~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          149 ----------FVG--LSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             ----------STT--SBSSCEEEECCSSCCCEECTTSS---TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             ----------hhh--cchhhhhhccccccccCCChhhc---cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence                      111  02457788888888888887776   34678888887 477888888888999999999999999


Q ss_pred             cCCCcchhhhhhcccCCCcEEECCCCc-ccccChhhhcCCCcccEEEccCCcccccc
Q psy3329         479 LSMTSELSFQFLDVLLELESLDLSNNN-LTHISPTVLRHNRAITSIKLVGNPWKCDC  534 (694)
Q Consensus       479 l~~~~~~~~~~l~~l~~L~~L~ls~N~-l~~~~~~~~~~~~~l~~l~l~~N~~~c~c  534 (694)
                      |+.+++..|      .+|+.|.+.++. +... |. +..+++|+.+++. +++.|.|
T Consensus       214 l~~lp~~~~------~~L~~L~~l~~~~l~~l-P~-l~~l~~L~~l~l~-~~~~c~~  261 (350)
T 4ay9_X          214 IHSLPSYGL------ENLKKLRARSTYNLKKL-PT-LEKLVALMEASLT-YPSHCCA  261 (350)
T ss_dssp             CCCCCSSSC------TTCCEEECTTCTTCCCC-CC-TTTCCSCCEEECS-CHHHHHH
T ss_pred             cCccChhhh------ccchHhhhccCCCcCcC-CC-chhCcChhhCcCC-CCccccc
Confidence            998776444      456666655543 4444 32 6788899999985 7777855

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=198.51  Aligned_cols=233  Identities=19%  Similarity=0.231  Sum_probs=123.1

Q ss_pred             CCcEEEcCCCCCCccchhhh--ccCCCCccEEEccCcCCCcCCcccc--cCCCCccEEeCCCCCCcccchhhcCCCCCCc
Q psy3329         214 KLRTLYLSGNPLSAADLSVA--LKPLTKLHRLSLRNCGLSRLPANTF--HRFTCLQELDISHNPLIDAFTALLSPLESLE  289 (694)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~  289 (694)
                      .++.+.+.++.++.......  ...+++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+.         
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---------  135 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW---------  135 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS---------
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh---------
Confidence            45566666555543322111  1122445666666665554444444  4455555555555555442210         


Q ss_pred             EEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcc---cCccc-cccCCCCCCCCe
Q psy3329         290 HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR---LNETV-FHENYTYPDLEE  365 (694)
Q Consensus       290 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~-~~~~~~~~~L~~  365 (694)
                                 +....+..+++|++|+|++|.+.++++..+..+++|++|++++|++.+   ++... +.   .+++|++
T Consensus       136 -----------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---~l~~L~~  201 (310)
T 4glp_A          136 -----------LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH---KFPAIQN  201 (310)
T ss_dssp             -----------HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT---SSCCCCS
T ss_pred             -----------hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh---cCCCCCE
Confidence                       011223345555555555555555555555555556666666655443   11111 12   4556666


Q ss_pred             eeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCC---
Q psy3329         366 LRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQL---  442 (694)
Q Consensus       366 L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l---  442 (694)
                      |++++|+++.++.         ++..+                 +..   +++|++|++++|.+++..|..+  ..+   
T Consensus       202 L~Ls~N~l~~l~~---------~~~~l-----------------~~~---l~~L~~L~Ls~N~l~~~~p~~~--~~~~~~  250 (310)
T 4glp_A          202 LALRNTGMETPTG---------VCAAL-----------------AAA---GVQPHSLDLSHNSLRATVNPSA--PRCMWS  250 (310)
T ss_dssp             CBCCSSCCCCHHH---------HHHHH-----------------HHH---TCCCSSEECTTSCCCCCCCSCC--SSCCCC
T ss_pred             EECCCCCCCchHH---------HHHHH-----------------Hhc---CCCCCEEECCCCCCCccchhhH--HhccCc
Confidence            6666666542211         01001                 112   5677777777777777654444  333   


Q ss_pred             CCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329         443 SRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH  508 (694)
Q Consensus       443 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~  508 (694)
                      ++|++|+|++|+|+.++...+   ++|++|+|++|++++++.  +   ..+++|+.|+|++|+++.
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~---~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--P---DELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--T---TSCCCCSCEECSSTTTSC
T ss_pred             CcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--h---hhCCCccEEECcCCCCCC
Confidence            577777777777776655432   677777777777776522  3   556777777777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=197.30  Aligned_cols=230  Identities=19%  Similarity=0.171  Sum_probs=176.6

Q ss_pred             CCccEEeCCCCCCcccchh---hcCCCCCCcEEECcCCCCcccChhhh--cCCCCCcEEeccCCcccCcCc----hhhcC
Q psy3329         262 TCLQELDISHNPLIDAFTA---LLSPLESLEHLDMGYSNLQRISRSTF--LKMTSLKTLILSGNKLETLES----GLFQN  332 (694)
Q Consensus       262 ~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~  332 (694)
                      ..++.+.+.++.+......   .+..+++|++|++++|.+.+..+..+  ..+++|++|+|++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3467777777766542111   11234669999999999888777777  889999999999999886433    34567


Q ss_pred             CCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhccccccc
Q psy3329         333 LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHE  412 (694)
Q Consensus       333 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~  412 (694)
                      +++|++|++++|+++.+++..+.   .+++|++|++++|++....         .++...                .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~---------~~~~~~----------------~~~~  195 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVR---AFPALTSLDLSDNPGLGER---------GLMAAL----------------CPHK  195 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCC---CCTTCCEEECCSCTTCHHH---------HHHTTS----------------CTTS
T ss_pred             ccCCCEEEeeCCCcchhhHHHhc---cCCCCCEEECCCCCCccch---------hhhHHH----------------hhhc
Confidence            89999999999999999888887   8999999999999875210         011000                0122


Q ss_pred             CCCCCCCceEEcCCCCCcccCCC---CCCCcCCCCccEEEccCCcCCccCCCCCCCC---CCCCEEEccCCccCCCcchh
Q psy3329         413 NYTYPDLEELRLSGNPLHVLPTG---NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNT---RNITSLNLANNNLSMTSELS  486 (694)
Q Consensus       413 ~~~~~~L~~L~Ls~n~l~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~  486 (694)
                         +++|++|++++|.++.++..   .+  ..+++|++|+|++|.|++..|..+..+   ++|++|+|++|+++.+ |..
T Consensus       196 ---l~~L~~L~Ls~N~l~~l~~~~~~l~--~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~  269 (310)
T 4glp_A          196 ---FPAIQNLALRNTGMETPTGVCAALA--AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKG  269 (310)
T ss_dssp             ---SCCCCSCBCCSSCCCCHHHHHHHHH--HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSC
T ss_pred             ---CCCCCEEECCCCCCCchHHHHHHHH--hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhh
Confidence               88999999999999865442   23  577999999999999999866666666   6999999999999965 444


Q ss_pred             hhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCcccc
Q psy3329         487 FQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKC  532 (694)
Q Consensus       487 ~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c  532 (694)
                      +     .++|+.|+|++|++++++.  +..+++|+.|++++|++..
T Consensus       270 ~-----~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          270 L-----PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-----CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred             h-----cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence            3     3799999999999998632  5778999999999999863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.85  E-value=9.3e-21  Score=177.06  Aligned_cols=146  Identities=25%  Similarity=0.421  Sum_probs=129.6

Q ss_pred             CCCCceEEcCCCCCcccCCC-CCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccC
Q psy3329         416 YPDLEELRLSGNPLHVLPTG-NLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLL  494 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~  494 (694)
                      ...+++|++++|.++++++. .|  ..+++|++|+|++|.|+++++..|.++++|++|+|++|+|+++.+..|   ..++
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~  102 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLF--GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF---LGLH  102 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSG--GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS---TTCT
T ss_pred             CCCCCEEECCCCcCCccCCcccc--ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh---cCCC
Confidence            45899999999999999875 46  899999999999999999999999999999999999999999998888   8899


Q ss_pred             CCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCCCceeecCCCCccccccc
Q psy3329         495 ELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIGFGA  566 (694)
Q Consensus       495 ~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (694)
                      +|++|+|++|++++.+|..+..+++|+.+++++|+|.|+|++.|+..|+.........+.|..|....+..+
T Consensus       103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l  174 (192)
T 1w8a_A          103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQI  174 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBG
T ss_pred             CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCCh
Confidence            999999999999999999999999999999999999999999999999987554445555666655555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.85  E-value=9.5e-21  Score=176.85  Aligned_cols=125  Identities=29%  Similarity=0.498  Sum_probs=118.0

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      .+.+++|++++|.++.++ ..|  ..+++|+.|+|++|.|+++++..|.++++|++|+|++|+|+++.+..|   ..+++
T Consensus        30 ~~~l~~L~L~~n~i~~ip-~~~--~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f---~~l~~  103 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTLVP-KEL--SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF---DGLKS  103 (193)
T ss_dssp             CTTCCEEECCSSCCCSCC-GGG--GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT---TTCTT
T ss_pred             CCCCCEEECCCCcCchhH-HHh--hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh---CCCCC
Confidence            568999999999999776 566  899999999999999999999999999999999999999999999888   89999


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~  546 (694)
                      |+.|+|++|+++++++..+..+++|+.+++++|||.|+|.+.|+..|....
T Consensus       104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~  154 (193)
T 2wfh_A          104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSE  154 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHS
T ss_pred             CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhc
Confidence            999999999999999988999999999999999999999999999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=9.3e-21  Score=195.38  Aligned_cols=239  Identities=25%  Similarity=0.313  Sum_probs=179.9

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCC-ccCCCCCCCCCCCCE-EeCCC
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLR-IIEPGVFDPLTSLEY-LMLNR   97 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~-L~L~~   97 (694)
                      ++++.++++++.||..+  .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++. .+++.+|.++++|++ +.++.
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            57899999999999655  468999999999999998889999999999999999985 477778999998876 66677


Q ss_pred             CcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccC-CCCCCCCccccCCCC-CCcEEeCCCCCCC
Q psy3329          98 CNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ-SGISNLPDNVFANNT-WLRNLNLAENELI  175 (694)
Q Consensus        98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~~-~L~~L~l~~n~l~  175 (694)
                      |+++.+.+.+|..+++|++|++++|.+..+..  ..+....++..|++.+ +.+..++...|..+. .++.|++++|.++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CcccccCchhhhhccccccccccccccccCCc--hhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            89999999999999999999999999986544  3344566778888865 678888877777764 5888899998888


Q ss_pred             CcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCc-CCCcCC
Q psy3329         176 DLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC-GLSRLP  254 (694)
Q Consensus       176 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n-~i~~~~  254 (694)
                      .++...+   ...+|+.+++.++...+.++.+.|..+++|+.|++++|+++..+.    ..+.+|+.|.+.++ +++.+|
T Consensus       168 ~i~~~~f---~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          168 EIHNSAF---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             EECTTSS---TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCCC
T ss_pred             CCChhhc---cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcCC
Confidence            7655444   345778888875443377777777777777777777777766543    22445555554443 444554


Q ss_pred             cccccCCCCccEEeCCC
Q psy3329         255 ANTFHRFTCLQELDISH  271 (694)
Q Consensus       255 ~~~~~~~~~L~~L~L~~  271 (694)
                        .+..+++|+.+++.+
T Consensus       241 --~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          241 --TLEKLVALMEASLTY  255 (350)
T ss_dssp             --CTTTCCSCCEEECSC
T ss_pred             --CchhCcChhhCcCCC
Confidence              255566666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=4e-21  Score=199.18  Aligned_cols=259  Identities=18%  Similarity=0.207  Sum_probs=147.0

Q ss_pred             EEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccCh----hhccCCC-CCCeEECCCCCCCccCCCCCCCC-----CC
Q psy3329          21 TINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINP----QFFTNLT-TLNKLDLSGNPLRIIEPGVFDPL-----TS   89 (694)
Q Consensus        21 ~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l-----~~   89 (694)
                      .+.++.+.++... ..+...++|++|++++|.++...+    .+|..++ +|++|+|++|.++...+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4677888888544 545555558888888888888776    6677777 78888888888876655545543     77


Q ss_pred             CCEEeCCCCcCCccChhhh----cCC-CCCCEEECCCCcCCccch--hhhhhcC-CCCCCEEEccCCCCCCCCcccc---
Q psy3329          90 LEYLMLNRCNLTYISPSAF----DNL-NHLKTLELSQNKLKSHID--WTLVLGN-LGKLDTLDLRQSGISNLPDNVF---  158 (694)
Q Consensus        90 L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~--~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~---  158 (694)
                      |++|+|++|.+++..+..+    ..+ ++|+.|++++|.++..+.  +...+.. .++|++|++++|.++......+   
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            8888888888777666533    334 678888888887765432  2223444 2577777777777764443222   


Q ss_pred             -CCCC-CCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcC-CCCcEEEcCCCCCCccchh---h
Q psy3329         159 -ANNT-WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA-TKLRTLYLSGNPLSAADLS---V  232 (694)
Q Consensus       159 -~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~---~  232 (694)
                       ...+ +|++|++++|.+++.....+.                       ..+..+ ++|+.|+|++|.+++....   .
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~-----------------------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELA-----------------------KFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHH-----------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHH-----------------------HHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence             2333 566666666655443321111                       112222 2444555544444432211   1


Q ss_pred             hccC-CCCccEEEccCcCCCcCCc----ccccCCCCccEEeCCCCCCcc-------cchhhcCCCCCCcEEECcCCCCcc
Q psy3329         233 ALKP-LTKLHRLSLRNCGLSRLPA----NTFHRFTCLQELDISHNPLID-------AFTALLSPLESLEHLDMGYSNLQR  300 (694)
Q Consensus       233 ~l~~-l~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~L~~n~~~~-------~~~~~~~~l~~L~~L~L~~n~l~~  300 (694)
                      .+.. .++|++|++++|.++....    ..+..+++|+.|++++|.+.+       .++..+..+++|+.|++++|.+..
T Consensus       219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            1111 2355555555555544332    122344555555555554222       123345566677777777777665


Q ss_pred             cC
Q psy3329         301 IS  302 (694)
Q Consensus       301 ~~  302 (694)
                      ..
T Consensus       299 ~~  300 (362)
T 3goz_A          299 SH  300 (362)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.2e-21  Score=205.30  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             CCcchhhhhhcCCCCcEEEccCCcCCccChhh----ccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCcc
Q psy3329          28 PIQPVEGAFLVARSLLYLYMQECTLSKINPQF----FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI  103 (694)
Q Consensus        28 ~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  103 (694)
                      .+..++..+..+++|++|++++|.+....+..    +..+++|++|+|++|.+..                     +.+.
T Consensus        20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~---------------------l~~~   78 (386)
T 2ca6_A           20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR---------------------VKDE   78 (386)
T ss_dssp             HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS---------------------CGGG
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc---------------------cccc
Confidence            33344455555666666666666555443222    3445555555555543322                     1111


Q ss_pred             Chh-------hhcCCCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCCC
Q psy3329         104 SPS-------AFDNLNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGIS  151 (694)
Q Consensus       104 ~~~-------~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i~  151 (694)
                      .|.       ++..+++|++|++++|.+...+  .++..+..+++|++|+|++|.++
T Consensus        79 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           79 IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             SHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             hhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            222       2345555555555555554321  23344455555555555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=6.8e-20  Score=176.45  Aligned_cols=124  Identities=31%  Similarity=0.555  Sum_probs=113.7

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|+.|+|++|.++.+++..|  ..+++|+.|+|++|+|+++++..|..+++|+.|+|++|+|+.+ |..+   ..+++
T Consensus        63 l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~---~~l~~  136 (229)
T 3e6j_A           63 LINLKELYLGSNQLGALPVGVF--DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGI---ERLTH  136 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTG---GGCTT
T ss_pred             ccCCcEEECCCCCCCCcChhhc--ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccccc-Cccc---ccCCC
Confidence            7788888888888888888877  8899999999999999999999999999999999999999955 5555   88999


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      |+.|+|++|+++++++..+..+++|+.+++++|||.|+|+ +.|+..|+..
T Consensus       137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~  187 (229)
T 3e6j_A          137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVAD  187 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHH
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHh
Confidence            9999999999999988889999999999999999999996 8999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=8e-22  Score=206.67  Aligned_cols=244  Identities=20%  Similarity=0.191  Sum_probs=135.9

Q ss_pred             CCCCCCCCEEeCCCCcCCccCh----hhhcCCCCCCEEECCCCcCCccc--------hhhhhhcCCCCCCEEEccCCCCC
Q psy3329          84 FDPLTSLEYLMLNRCNLTYISP----SAFDNLNHLKTLELSQNKLKSHI--------DWTLVLGNLGKLDTLDLRQSGIS  151 (694)
Q Consensus        84 ~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~--------~~~~~~~~l~~L~~L~L~~n~i~  151 (694)
                      +..+++|++|+|++|.+....+    ..+.++++|+.|++++|.+..+.        .+...+..+++|++|+|++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3345555556665555554322    23455666666666665443221        12223456677777777776666


Q ss_pred             CC----CccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcC---------CCCcEE
Q psy3329         152 NL----PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNA---------TKLRTL  218 (694)
Q Consensus       152 ~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~---------~~L~~L  218 (694)
                      ..    .+..+..+++|++|++++|.+.......+.                       ..+..+         ++|++|
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~-----------------------~~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA-----------------------RALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH-----------------------HHHHHHHHHHHHHTCCCCCEE
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH-----------------------HHHHHHhhhhhcccCCCCcEE
Confidence            52    222345555566666655554322111110                       112222         666666


Q ss_pred             EcCCCCCCccchh---hhccCCCCccEEEccCcCCCc-----CCcccccCCCCccEEeCCCCCCc----ccchhhcCCCC
Q psy3329         219 YLSGNPLSAADLS---VALKPLTKLHRLSLRNCGLSR-----LPANTFHRFTCLQELDISHNPLI----DAFTALLSPLE  286 (694)
Q Consensus       219 ~L~~n~l~~~~~~---~~l~~l~~L~~L~l~~n~i~~-----~~~~~~~~~~~L~~L~L~~n~~~----~~~~~~~~~l~  286 (694)
                      ++++|.++.....   ..+..+++|+.|++++|.++.     +.+..+..+++|+.|+|++|.++    ..++..+..++
T Consensus       165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~  244 (386)
T 2ca6_A          165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  244 (386)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence            6666666543332   234456667777777666652     22224566677777777777765    45566666777


Q ss_pred             CCcEEECcCCCCcccC----hhhhc--CCCCCcEEeccCCcccC-----cCchhhcCCCCCCEEeCCCCCCcccC
Q psy3329         287 SLEHLDMGYSNLQRIS----RSTFL--KMTSLKTLILSGNKLET-----LESGLFQNLTHLSVLELNNCGLTRLN  350 (694)
Q Consensus       287 ~L~~L~L~~n~l~~~~----~~~~~--~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~~~~  350 (694)
                      +|++|+|++|.++...    +..+.  .+++|+.|+|++|.++.     ++...+..+++|+.|++++|.+++..
T Consensus       245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            7777777777776542    23332  26777777777777766     33332255677777777777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=1.3e-20  Score=203.98  Aligned_cols=212  Identities=27%  Similarity=0.293  Sum_probs=109.5

Q ss_pred             CccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEecc
Q psy3329         239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS  318 (694)
Q Consensus       239 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  318 (694)
                      +|+.|++++|++++++...   +++|+.|++++|.+.. +|   ..+++|++|+|++|.+++++.  +.+  +|+.|+|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence            6667777777666655432   2456666666666653 22   234555555555555555443  322  55555555


Q ss_pred             CCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccch
Q psy3329         319 GNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDF  398 (694)
Q Consensus       319 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~  398 (694)
                      +|.+++++.    .+++|+.|++++|.++.++.       .                                       
T Consensus       129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~-------~---------------------------------------  158 (571)
T 3cvr_A          129 NNQLTMLPE----LPALLEYINADNNQLTMLPE-------L---------------------------------------  158 (571)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSCCCC-------C---------------------------------------
T ss_pred             CCcCCCCCC----cCccccEEeCCCCccCcCCC-------c---------------------------------------
Confidence            555555433    34455555555555444332       1                                       


Q ss_pred             hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCC-------CE
Q psy3329         399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNI-------TS  471 (694)
Q Consensus       399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~  471 (694)
                                       +++|+.|++++|.+++++.  +  .  ++|+.|+|++|.|+.++.  |..  +|       +.
T Consensus       159 -----------------l~~L~~L~Ls~N~L~~lp~--l--~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~  211 (571)
T 3cvr_A          159 -----------------PTSLEVLSVRNNQLTFLPE--L--P--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIF  211 (571)
T ss_dssp             -----------------CTTCCEEECCSSCCSCCCC--C--C--TTCCEEECCSSCCSSCCC--CC----------CCEE
T ss_pred             -----------------CCCcCEEECCCCCCCCcch--h--h--CCCCEEECcCCCCCchhh--HHH--hhhcccccceE
Confidence                             4455555555555555443  3  2  556666666666665544  332  44       66


Q ss_pred             EEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcc-------cEEEcc-------CCccccccCcH
Q psy3329         472 LNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAI-------TSIKLV-------GNPWKCDCNIA  537 (694)
Q Consensus       472 L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l-------~~l~l~-------~N~~~c~c~~~  537 (694)
                      |+|++|+|+.+++ .+   ..+++|+.|+|++|.+++.+|..+..+...       ..++++       .+| .|+|...
T Consensus       212 L~Ls~N~l~~lp~-~l---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~  286 (571)
T 3cvr_A          212 FRCRENRITHIPE-NI---LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP-LADAVTA  286 (571)
T ss_dssp             EECCSSCCCCCCG-GG---GGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC----------C-CSHHHHT
T ss_pred             EecCCCcceecCH-HH---hcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeeccccccccccc-chhhHHH
Confidence            6666666665433 22   346666666666666666555544432211       112222       245 6999888


Q ss_pred             HHHHHH
Q psy3329         538 DMWEWA  543 (694)
Q Consensus       538 ~~~~~~  543 (694)
                      |+..+.
T Consensus       287 Wl~~~~  292 (571)
T 3cvr_A          287 WFPENK  292 (571)
T ss_dssp             TCC---
T ss_pred             Hhhhhc
Confidence            876554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=2.5e-21  Score=199.04  Aligned_cols=236  Identities=22%  Similarity=0.252  Sum_probs=99.8

Q ss_pred             CCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEE
Q psy3329          88 TSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNL  167 (694)
Q Consensus        88 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L  167 (694)
                      ++++.|++++|.+.+..+. +..+++|+.|++++|.+.. ..++..+..+++|++|++++|.++...+..+..+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            4455555555555444332 3345555555555555432 1133445555555555555555443333344444555555


Q ss_pred             eCCCC-CCCCcchhhhcccCCCcccEEeCCCC-CCCCCCChhhhhcCC-CCcEEEcCCC--CCCccchhhhccCCCCccE
Q psy3329         168 NLAEN-ELIDLDVATTLGQNLVHLDSLDLSNC-HLKGPLSEDAFVNAT-KLRTLYLSGN--PLSAADLSVALKPLTKLHR  242 (694)
Q Consensus       168 ~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~-~L~~L~L~~n--~l~~~~~~~~l~~l~~L~~  242 (694)
                      ++++| .+++........ .+++|++|++++| .+.+......+..++ +|++|++++|  .+++.....          
T Consensus       148 ~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~----------  216 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST----------  216 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----------
T ss_pred             ECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH----------
Confidence            55554 232211111111 2333444444443 332110112233444 4444444444  222222222          


Q ss_pred             EEccCcCCCcCCcccccCCCCccEEeCCCCC-CcccchhhcCCCCCCcEEECcCCC-CcccChhhhcCCCCCcEEeccCC
Q psy3329         243 LSLRNCGLSRLPANTFHRFTCLQELDISHNP-LIDAFTALLSPLESLEHLDMGYSN-LQRISRSTFLKMTSLKTLILSGN  320 (694)
Q Consensus       243 L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n  320 (694)
                                    .+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus       217 --------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          217 --------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             --------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             --------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence                          23344445555555554 333333344445555555555552 22111123455566666666655


Q ss_pred             cccCcCchhhcCCCCCCEEeCCCCCCcccCccc
Q psy3329         321 KLETLESGLFQNLTHLSVLELNNCGLTRLNETV  353 (694)
Q Consensus       321 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  353 (694)
                       +.......+.  ..+..|++++|.++++.+..
T Consensus       283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          283 -VPDGTLQLLK--EALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             -SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred             -cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence             2221111111  22444555666666544433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=4.6e-21  Score=197.08  Aligned_cols=255  Identities=19%  Similarity=0.204  Sum_probs=133.0

Q ss_pred             CcEEEccCCcCCccChhhccCC--CCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCcc-ChhhhcCCCCCCEEE
Q psy3329          42 LLYLYMQECTLSKINPQFFTNL--TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI-SPSAFDNLNHLKTLE  118 (694)
Q Consensus        42 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~  118 (694)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            455555554433   3334444  5555555555555554443 33455555555555555442 344455555555555


Q ss_pred             CCCCcCCccchhhhhhcCCCCCCEEEccCC-CCCCC-CccccCCCCCCcEEeCCCC-CCCCcchhhhcccCCC-cccEEe
Q psy3329         119 LSQNKLKSHIDWTLVLGNLGKLDTLDLRQS-GISNL-PDNVFANNTWLRNLNLAEN-ELIDLDVATTLGQNLV-HLDSLD  194 (694)
Q Consensus       119 l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~-~L~~L~  194 (694)
                      +++|.++.  ..+..+..+++|++|++++| .++.. .+..+..+++|++|++++| .+++........ .++ +|++|+
T Consensus       125 L~~~~l~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~  201 (336)
T 2ast_B          125 LEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLN  201 (336)
T ss_dssp             CTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEE
T ss_pred             CcCcccCH--HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEE
Confidence            55555442  33344555555555555555 34321 2223445555666666655 544322222222 455 666666


Q ss_pred             CCCC--CCCCCCChhhhhcCCCCcEEEcCCCC-CCccchhhhccCCCCccEEEccCcC-CCcCCcccccCCCCccEEeCC
Q psy3329         195 LSNC--HLKGPLSEDAFVNATKLRTLYLSGNP-LSAADLSVALKPLTKLHRLSLRNCG-LSRLPANTFHRFTCLQELDIS  270 (694)
Q Consensus       195 l~~n--~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~L~  270 (694)
                      +++|  .++...-...+..+++|+.|++++|. +++..+. .+..+++|+.|++++|. +.......+..+++|+.|+++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            6666  33211112345567777777777776 4444333 34666777777777773 332222246667777777777


Q ss_pred             CCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhc
Q psy3329         271 HNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFL  307 (694)
Q Consensus       271 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  307 (694)
                      +| +.......+.  .++..|+++.|.++++.+..++
T Consensus       281 ~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          281 GI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred             Cc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence            77 4332212221  2345555777777776665544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.2e-18  Score=165.39  Aligned_cols=125  Identities=33%  Similarity=0.581  Sum_probs=113.1

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|++|++++|.++++++..|  ..+++|++|+|++|.++++++..|.++++|++|++++|+++++.+..|   ..+++
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~  125 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF---DKLTQ  125 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred             cccCcEEECCCCccCccChhhc--CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh---ccCCc
Confidence            7788888888888888888777  889999999999999999999889999999999999999999888777   88999


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      |+.|++++|+++++++..+..+++|+.+++++|++.|+|+ +.++..|...
T Consensus       126 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK  176 (208)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHH
T ss_pred             CCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHh
Confidence            9999999999999888888999999999999999999997 6777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.4e-19  Score=169.17  Aligned_cols=174  Identities=30%  Similarity=0.391  Sum_probs=152.8

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN   99 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~   99 (694)
                      +.++++++.++.+|..+  .++|++|++++|.++.+.+..|..+++|++|++++|+++.+++..|..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            57889999999998544  5689999999999999988889999999999999999999988888999999999999999


Q ss_pred             CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcch
Q psy3329         100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV  179 (694)
Q Consensus       100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  179 (694)
                      ++++++..|..+++|++|++++|.++.+..  ..+.++++|++|++++|.++.+++..+..+++|++|++++|.+..   
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            999988889999999999999999986443  457889999999999999999998888999999999999997653   


Q ss_pred             hhhcccCCCcccEEeCCCCCCCCCCCh
Q psy3329         180 ATTLGQNLVHLDSLDLSNCHLKGPLSE  206 (694)
Q Consensus       180 ~~~~~~~~~~L~~L~l~~n~~~~~~~~  206 (694)
                            .++.|++|+++.|.+.+.+|.
T Consensus       163 ------~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          163 ------TCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             ------CTTTTHHHHHHHHHCTTTBBC
T ss_pred             ------CCCCHHHHHHHHHhCCceeec
Confidence                  567788888888888777774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=2.7e-19  Score=178.98  Aligned_cols=172  Identities=23%  Similarity=0.380  Sum_probs=93.5

Q ss_pred             CCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCC
Q psy3329         285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLE  364 (694)
Q Consensus       285 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  364 (694)
                      +++|++|++++|.+..+.  .+..+++|+.|++++|.++++.+  +..+++|+.|++++|.++.++.  +.   .+++|+
T Consensus        45 l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~---~l~~L~  115 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LK---DLKKLK  115 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GT---TCTTCC
T ss_pred             cCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hc---cCCCCC
Confidence            344444444444444442  24445555555555555554443  4455555555555555544332  22   445555


Q ss_pred             eeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCC
Q psy3329         365 ELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSR  444 (694)
Q Consensus       365 ~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~  444 (694)
                      .|++++|+++.++.                               +..   +++|+.|++++|.++++  ..+  ..+++
T Consensus       116 ~L~L~~n~i~~~~~-------------------------------l~~---l~~L~~L~l~~n~l~~~--~~l--~~l~~  157 (291)
T 1h6t_A          116 SLSLEHNGISDING-------------------------------LVH---LPQLESLYLGNNKITDI--TVL--SRLTK  157 (291)
T ss_dssp             EEECTTSCCCCCGG-------------------------------GGG---CTTCCEEECCSSCCCCC--GGG--GGCTT
T ss_pred             EEECCCCcCCCChh-------------------------------hcC---CCCCCEEEccCCcCCcc--hhh--ccCCC
Confidence            55555555443211                               111   55666666666666655  233  56666


Q ss_pred             ccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccC
Q psy3329         445 LRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHIS  510 (694)
Q Consensus       445 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~  510 (694)
                      |+.|++++|.++++++  +..+++|+.|++++|+++++..  +   ..+++|+.|++++|+++..+
T Consensus       158 L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l---~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--L---AGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--G---TTCTTCSEEEEEEEEEECCC
T ss_pred             CCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--h---ccCCCCCEEECcCCcccCCc
Confidence            7777777777766655  5666777777777777666421  3   56667777777777666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=5.5e-19  Score=180.48  Aligned_cols=284  Identities=19%  Similarity=0.298  Sum_probs=146.3

Q ss_pred             CCCCcEEEccCCcCCccChhhccC-CCCCCeEECCCCCCC--ccCCCCCCCCCCCCEEeCCCCcCCccChhhhcC-----
Q psy3329          39 ARSLLYLYMQECTLSKINPQFFTN-LTTLNKLDLSGNPLR--IIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDN-----  110 (694)
Q Consensus        39 ~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----  110 (694)
                      +.+++.|.++++ +.......+.. +++|+.|||++|++.  ......+.   .++.+.+..+   .++..+|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhccccccc
Confidence            344555655542 22111122223 566666666666665  33322222   1333333333   333445555     


Q ss_pred             ---CCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCC----CCcchhhhc
Q psy3329         111 ---LNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL----IDLDVATTL  183 (694)
Q Consensus       111 ---l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~  183 (694)
                         |++|+.|++.+ .++.++.  ..|.+|++|+.+++++|.+..+++.+|..+.++..+....+..    ..+....+.
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~--~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIED--AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECT--TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             ccccCCCcEEECCc-cccchhH--HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence               66666666666 5554443  4566666666666666666666666666666666555544211    111111111


Q ss_pred             ccCCCccc-EEeCCCCCCCCCCChhhhhc---CCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCccccc
Q psy3329         184 GQNLVHLD-SLDLSNCHLKGPLSEDAFVN---ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH  259 (694)
Q Consensus       184 ~~~~~~L~-~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~  259 (694)
                        .+..|+ .+.+...   +.++...+..   ..+++.+.+.++ +...........+++|+.+++++|+++.++..+|.
T Consensus       174 --~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~  247 (329)
T 3sb4_A          174 --EGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA  247 (329)
T ss_dssp             --ESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred             --cccccceeEEecCC---CcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence              233333 2333221   1222222211   334455555443 22222221222356677777776667766666676


Q ss_pred             CCCCccEEeCCCCCCcccchhhcCCCCCCc-EEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCE
Q psy3329         260 RFTCLQELDISHNPLIDAFTALLSPLESLE-HLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSV  338 (694)
Q Consensus       260 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  338 (694)
                      +|++|+.+++.+| +..+...+|.++++|+ .+++.. .++.+.+.+|.+|++|+.+++++|.+..+....|.++++|+.
T Consensus       248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence            6767777776665 5555556666666666 666665 566666666666666666666666666666666666666666


Q ss_pred             Ee
Q psy3329         339 LE  340 (694)
Q Consensus       339 L~  340 (694)
                      +.
T Consensus       326 ly  327 (329)
T 3sb4_A          326 IY  327 (329)
T ss_dssp             EE
T ss_pred             hc
Confidence            54

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=7.6e-19  Score=175.71  Aligned_cols=175  Identities=21%  Similarity=0.320  Sum_probs=106.9

Q ss_pred             cCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcE
Q psy3329         235 KPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT  314 (694)
Q Consensus       235 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  314 (694)
                      ..+++|+.|++++|.+..++  .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++.+.  .+..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCE
Confidence            34456666666666666553  25555666666666665555433  555555555555555555433  2444555555


Q ss_pred             EeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhcc
Q psy3329         315 LILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK  394 (694)
Q Consensus       315 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~  394 (694)
                      |++++|.+.++.  .+..                           +++|+.|++++|+++.++.                
T Consensus       117 L~L~~n~i~~~~--~l~~---------------------------l~~L~~L~l~~n~l~~~~~----------------  151 (291)
T 1h6t_A          117 LSLEHNGISDIN--GLVH---------------------------LPQLESLYLGNNKITDITV----------------  151 (291)
T ss_dssp             EECTTSCCCCCG--GGGG---------------------------CTTCCEEECCSSCCCCCGG----------------
T ss_pred             EECCCCcCCCCh--hhcC---------------------------CCCCCEEEccCCcCCcchh----------------
Confidence            555555544432  2344                           4455555555554443210                


Q ss_pred             ccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEc
Q psy3329         395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL  474 (694)
Q Consensus       395 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  474 (694)
                                     +..   +++|+.|++++|.++++++  +  ..+++|+.|+|++|.|++++.  +..+++|+.|++
T Consensus       152 ---------------l~~---l~~L~~L~L~~N~l~~~~~--l--~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l  207 (291)
T 1h6t_A          152 ---------------LSR---LTKLDTLSLEDNQISDIVP--L--AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL  207 (291)
T ss_dssp             ---------------GGG---CTTCSEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEE
T ss_pred             ---------------hcc---CCCCCEEEccCCccccchh--h--cCCCccCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence                           112   6777777777777777765  4  678889999999998888753  788899999999


Q ss_pred             cCCccCCCcc
Q psy3329         475 ANNNLSMTSE  484 (694)
Q Consensus       475 ~~N~l~~~~~  484 (694)
                      ++|+++....
T Consensus       208 ~~n~i~~~~~  217 (291)
T 1h6t_A          208 FSQECLNKPI  217 (291)
T ss_dssp             EEEEEECCCE
T ss_pred             cCCcccCCcc
Confidence            9998887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=4e-18  Score=184.57  Aligned_cols=194  Identities=25%  Similarity=0.252  Sum_probs=146.6

Q ss_pred             CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEE
Q psy3329         213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLD  292 (694)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  292 (694)
                      .+|+.|++++|.++.++..    -+++|+.|++++|.++.++    ..+++|+.|++++|.+.+ +|. +..  +|++|+
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~----l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDN----LPPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSC----CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CCccEEEeCCCCCCccCHh----HcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            3899999999999875432    2378999999999999887    347899999999999988 554 554  999999


Q ss_pred             CcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCC
Q psy3329         293 MGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP  372 (694)
Q Consensus       293 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~  372 (694)
                      |++|.+++++.    .+++|+.|+|++|.+++++.    .+++|+.|++++|.++.++.  +    . ++|+.|++++|.
T Consensus       127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l----~-~~L~~L~Ls~N~  191 (571)
T 3cvr_A          127 VDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--L----P-ESLEALDVSTNL  191 (571)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--C----C-TTCCEEECCSSC
T ss_pred             CCCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--h----h-CCCCEEECcCCC
Confidence            99999999775    68999999999999999775    57899999999999998776  3    2 677777777777


Q ss_pred             CcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccC
Q psy3329         373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR  452 (694)
Q Consensus       373 l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~  452 (694)
                      |+.+|.             +                       ..+|                 +  ...+.|+.|+|++
T Consensus       192 L~~lp~-------------~-----------------------~~~L-----------------~--~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          192 LESLPA-------------V-----------------------PVRN-----------------H--HSEETEIFFRCRE  216 (571)
T ss_dssp             CSSCCC-------------C-----------------------C---------------------------CCEEEECCS
T ss_pred             CCchhh-------------H-----------------------HHhh-----------------h--cccccceEEecCC
Confidence            654331             0                       0001                 0  1223447777777


Q ss_pred             CcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhh
Q psy3329         453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF  489 (694)
Q Consensus       453 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  489 (694)
                      |.|+.+++.. ..+++|+.|+|++|.+++.+|..+..
T Consensus       217 N~l~~lp~~l-~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          217 NRITHIPENI-LSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             SCCCCCCGGG-GGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             CcceecCHHH-hcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            7777765554 34777778888888777777766643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=8.8e-19  Score=191.99  Aligned_cols=190  Identities=20%  Similarity=0.307  Sum_probs=113.4

Q ss_pred             ccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccC
Q psy3329         240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG  319 (694)
Q Consensus       240 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  319 (694)
                      +..+.+..+.+.++..  +..+++|+.|++++|.+....  .+..+++|+.|+|++|.++.+.+  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            4444555555555432  445667777777777765542  35666777777777777776654  66777777777777


Q ss_pred             CcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchh
Q psy3329         320 NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFL  399 (694)
Q Consensus       320 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l  399 (694)
                      |.+..++  .+..+++|+.|+|++|.++.++.  +.   .+++|+.|+|++|.++.++.                     
T Consensus        97 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--l~---~l~~L~~L~Ls~N~l~~l~~---------------------  148 (605)
T 1m9s_A           97 NKIKDLS--SLKDLKKLKSLSLEHNGISDING--LV---HLPQLESLYLGNNKITDITV---------------------  148 (605)
T ss_dssp             SCCCCCT--TSTTCTTCCEEECTTSCCCCCGG--GG---GCTTCSEEECCSSCCCCCGG---------------------
T ss_pred             CCCCCCh--hhccCCCCCEEEecCCCCCCCcc--cc---CCCccCEEECCCCccCCchh---------------------
Confidence            7776654  36666777777777776666532  22   45666666666666553310                     


Q ss_pred             hhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCcc
Q psy3329         400 VILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL  479 (694)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  479 (694)
                                +..   +++|+.|+|++|.++++++  +  ..+++|+.|+|++|.|++++  .+..+++|+.|+|++|++
T Consensus       149 ----------l~~---l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          149 ----------LSR---LTKLDTLSLEDNQISDIVP--L--AGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ----------GGS---CTTCSEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEE
T ss_pred             ----------hcc---cCCCCEEECcCCcCCCchh--h--ccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcC
Confidence                      112   5556666666666655544  3  45566666666666665542  245556666666666665


Q ss_pred             CCC
Q psy3329         480 SMT  482 (694)
Q Consensus       480 ~~~  482 (694)
                      ++.
T Consensus       210 ~~~  212 (605)
T 1m9s_A          210 LNK  212 (605)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=5.2e-18  Score=162.04  Aligned_cols=153  Identities=22%  Similarity=0.354  Sum_probs=138.5

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN   99 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~   99 (694)
                      +.++++++.++.+|..+.  ++++.|++++|.++.+.+..|..+++|++|+|++|.++.+.+..|.++++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            679999999999996553  789999999999999988899999999999999999999988889999999999999999


Q ss_pred             CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCC
Q psy3329         100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID  176 (694)
Q Consensus       100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~  176 (694)
                      ++.+++..|..+++|+.|++++|.+..+..  ..+..+++|+.|+|++|.++.+++..|..+++|+.|++++|.+..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRV--DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCH--HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999988889999999999999999986543  678889999999999999999998889999999999999988754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.8e-18  Score=176.60  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=98.1

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCC-EEEccCCccCCCcchhhhhhcccC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNIT-SLNLANNNLSMTSELSFQFLDVLL  494 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~l~  494 (694)
                      +++|+.++|++|.++.++...|  .++++|+.|+|++| ++.+.+.+|.+|.+|+ .+++.+ +++.+.+.+|   .+|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF--~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF---~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTF--AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF---MGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTT--TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTT---TTCT
T ss_pred             cCCCeEEECCCCCcceecHhhh--hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhh---hCCc
Confidence            7899999999999999999999  99999999999998 9999999999999999 999999 8988889999   8999


Q ss_pred             CCcEEECCCCcccccChhhhcCCCcccEEEc
Q psy3329         495 ELESLDLSNNNLTHISPTVLRHNRAITSIKL  525 (694)
Q Consensus       495 ~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l  525 (694)
                      +|+.+++++|+++.+.+.+|..+++|+.++.
T Consensus       298 ~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          298 NLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999999999999999999999998874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=9.3e-18  Score=161.46  Aligned_cols=153  Identities=29%  Similarity=0.398  Sum_probs=140.8

Q ss_pred             ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329          19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      .+.++++++.++.+|..+  .++|++|++++|.++++.+..|..+++|++|+|++|.++.+++..|..+++|++|+|++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            567999999999999644  489999999999999999999999999999999999999999888999999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCC
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID  176 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~  176 (694)
                      .++.+.+..|..+++|+.|++++|.+..   +|..+..+++|++|++++|.++.+++..|..+++|+.|++++|.+..
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTE---LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCS---CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccc---cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            9999988889999999999999999984   45677899999999999999999998889999999999999998764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.76  E-value=9.8e-18  Score=154.50  Aligned_cols=125  Identities=31%  Similarity=0.549  Sum_probs=117.7

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      .++|+.|++++|.++++++..+  ..+++|++|+|++|.|+++++..|.++++|++|++++|++++.++..|   ..+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~  101 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF---DKLTQ  101 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred             CCCCcEEEeCCCcccEeCHHHh--cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHh---hCCcc
Confidence            5789999999999999998888  889999999999999999999999999999999999999999988877   88999


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      |+.|++++|+++++++..+..+++|+.+++++|++.|+|+ +.|+..|...
T Consensus       102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~  152 (177)
T 2o6r_A          102 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  152 (177)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhh
Confidence            9999999999999988888999999999999999999998 7889999876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.76  E-value=3e-17  Score=172.04  Aligned_cols=312  Identities=18%  Similarity=0.230  Sum_probs=154.1

Q ss_pred             ccCcccCCCCCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCC
Q psy3329           8 YNDRRNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDP   86 (694)
Q Consensus         8 ~~~~~~~~~~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~   86 (694)
                      +++.+|.+|.+|+.+.+.. .++.|. .+|.+|++|+.+++..+ ++.+...+|.++..|+.+.+..+ +..+...+|.+
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            3455666666666666653 355555 56666666666666543 55555666666666666555432 44555555655


Q ss_pred             CCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcE
Q psy3329          87 LTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRN  166 (694)
Q Consensus        87 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~  166 (694)
                      +..++.....  ....+...+|.++++|+.+.+..+. ..++.  ..+.++.+|+.+.+..+ +..+...+|.++..|+.
T Consensus       139 ~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~--~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          139 CDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHN--GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             CCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECT--TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             ccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceecc--ccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            5433332222  2333444556666666666665442 22222  34556666666666543 45555556666666666


Q ss_pred             EeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEcc
Q psy3329         167 LNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLR  246 (694)
Q Consensus       167 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  246 (694)
                      +.+..+... +....+   ....|+.+.+....  ..+....|..+..|+.+.+..+... ... ..+..+..++.+...
T Consensus       213 i~~~~~~~~-i~~~~~---~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~-~~F~~~~~l~~~~~~  284 (394)
T 4fs7_A          213 MEFPNSLYY-LGDFAL---SKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGG-SLFYNCSGLKKVIYG  284 (394)
T ss_dssp             CCCCTTCCE-ECTTTT---TTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECS-CTTTTCTTCCEEEEC
T ss_pred             eecCCCceE-eehhhc---ccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eec-cccccccccceeccC
Confidence            655543221 111111   23445555544321  2223334555555555555443221 111 123444555554444


Q ss_pred             CcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcC
Q psy3329         247 NCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE  326 (694)
Q Consensus       247 ~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  326 (694)
                      ...   ++..+|..+.+|+.+.+..+ +......+|.++.+|+.++|.. .++.+...+|.+|.+|+.+.+..+ ++.+.
T Consensus       285 ~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          285 SVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             SSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             cee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            332   22234455555555555433 3333344455555555555542 244555555555555555555443 44455


Q ss_pred             chhhcCCCCCCEEeCC
Q psy3329         327 SGLFQNLTHLSVLELN  342 (694)
Q Consensus       327 ~~~l~~l~~L~~L~L~  342 (694)
                      ..+|.+|++|+.+++.
T Consensus       359 ~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          359 ANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTBTTCTTCCEEEEE
T ss_pred             HHHhhCCCCCCEEEEC
Confidence            5555555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=158.80  Aligned_cols=154  Identities=21%  Similarity=0.303  Sum_probs=137.3

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccCh-hhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINP-QFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      +.++++++.++.+|..+  .+.+++|++++|.++.+.+ ..|..+++|++|++++|.++.+++..|..+++|++|+|++|
T Consensus        14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            58999999999999654  4567899999999999854 56899999999999999999999988999999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCc
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL  177 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~  177 (694)
                      .++++.+..|..+++|++|++++|.+..+.  +..+.++++|++|++++|.++.+++..|..+++|+.|++++|.+...
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBC--TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeEC--HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999999999999999999999999998643  36788999999999999999999888899999999999999987643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.2e-17  Score=172.89  Aligned_cols=154  Identities=25%  Similarity=0.337  Sum_probs=116.9

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhcc-CCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFT-NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      +.++++++.++.+|..+  .+.++.|+|++|.++.+.+..|. .+++|++|+|++|.++.+++..|..+++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            57888888888888544  34588888888888888877777 8888888888888888888878888888888888888


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCcccc---CCCCCCcEEeCCCCCCC
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVF---ANNTWLRNLNLAENELI  175 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~~~~L~~L~l~~n~l~  175 (694)
                      .++.+.+..|..+++|+.|+|++|.+..+.  +..+.++++|+.|+|++|.++.++...|   ..+++|+.|++++|.++
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVD--RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEEC--HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            888887778888888888888888887543  2567777888888888888877776655   34555555555555544


Q ss_pred             Cc
Q psy3329         176 DL  177 (694)
Q Consensus       176 ~~  177 (694)
                      .+
T Consensus       177 ~l  178 (361)
T 2xot_A          177 KL  178 (361)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=6e-18  Score=185.38  Aligned_cols=198  Identities=22%  Similarity=0.336  Sum_probs=166.5

Q ss_pred             CCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeC
Q psy3329         262 TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL  341 (694)
Q Consensus       262 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  341 (694)
                      ..+..+.+..+.+.+..+  +..+++|+.|++++|.+..+.  .+..+++|+.|+|++|.+.++++  +..+++|+.|+|
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            346667777777776654  346788999999999999886  58899999999999999999887  889999999999


Q ss_pred             CCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCce
Q psy3329         342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEE  421 (694)
Q Consensus       342 ~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~  421 (694)
                      ++|.++.++  .+.   .+++|+.|+|++|.+..++.                               +..   +++|+.
T Consensus        95 s~N~l~~l~--~l~---~l~~L~~L~Ls~N~l~~l~~-------------------------------l~~---l~~L~~  135 (605)
T 1m9s_A           95 DENKIKDLS--SLK---DLKKLKSLSLEHNGISDING-------------------------------LVH---LPQLES  135 (605)
T ss_dssp             CSSCCCCCT--TST---TCTTCCEEECTTSCCCCCGG-------------------------------GGG---CTTCSE
T ss_pred             cCCCCCCCh--hhc---cCCCCCEEEecCCCCCCCcc-------------------------------ccC---CCccCE
Confidence            999999876  233   78999999999999875431                               222   899999


Q ss_pred             EEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEEC
Q psy3329         422 LRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDL  501 (694)
Q Consensus       422 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~l  501 (694)
                      |+|++|.++++  ..+  ..+++|+.|+|++|.|+++++  +..+++|+.|+|++|+|+++.  .+   ..+++|+.|+|
T Consensus       136 L~Ls~N~l~~l--~~l--~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l---~~l~~L~~L~L  204 (605)
T 1m9s_A          136 LYLGNNKITDI--TVL--SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--AL---AGLKNLDVLEL  204 (605)
T ss_dssp             EECCSSCCCCC--GGG--GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GG---TTCTTCSEEEC
T ss_pred             EECCCCccCCc--hhh--cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HH---ccCCCCCEEEc
Confidence            99999999987  345  789999999999999999877  889999999999999999862  34   88999999999


Q ss_pred             CCCcccccChhhhc
Q psy3329         502 SNNNLTHISPTVLR  515 (694)
Q Consensus       502 s~N~l~~~~~~~~~  515 (694)
                      ++|++++.+...+.
T Consensus       205 ~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          205 FSQECLNKPINHQS  218 (605)
T ss_dssp             CSEEEECCCCCCCS
T ss_pred             cCCcCcCCcccccc
Confidence            99999886554433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.74  E-value=1.1e-16  Score=166.56  Aligned_cols=265  Identities=16%  Similarity=0.278  Sum_probs=142.5

Q ss_pred             CCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCE
Q psy3329          63 LTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDT  142 (694)
Q Consensus        63 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  142 (694)
                      +..++.+.+.+ .++.|...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..++.  ..|.+|++|+.
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~--~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE--DIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS--STTTTCTTCCE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH--HHhhCcccCCe
Confidence            34555555543 3445555555543 4555555443 555555555553 455555543 3333332  34555555555


Q ss_pred             EEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCC
Q psy3329         143 LDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG  222 (694)
Q Consensus       143 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  222 (694)
                      +++..|.++.++..+|. +.+|+.+.+..+ +..+                           +...|..|++|+.+++..
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I---------------------------~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEI---------------------------GSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEE---------------------------CTTTTTTCTTCCCEECCT
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hhee---------------------------hhhHhhCCCCCCEEecCC
Confidence            55555555555555554 345555555422 2221                           222334444444444433


Q ss_pred             CCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCc-----ccchhhcCCCCCCcEEECcCCC
Q psy3329         223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI-----DAFTALLSPLESLEHLDMGYSN  297 (694)
Q Consensus       223 n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~  297 (694)
                      + ++.+.... +.. .+|+.+.+ .+.++.+...+|.+|++|+.+.+.+|.+.     .....+|.++++|+.+.|. +.
T Consensus       236 ~-l~~I~~~a-F~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~  310 (401)
T 4fdw_A          236 N-VSTIGQEA-FRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES  310 (401)
T ss_dssp             T-CCEECTTT-TTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred             C-ccCccccc-ccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence            2 22222221 122 34555555 23355555555666666666666555443     3444566667777777776 34


Q ss_pred             CcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCC-CCCCeeeCCCCCC
Q psy3329         298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTY-PDLEELRLSGNPL  373 (694)
Q Consensus       298 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~L~~L~Ls~n~l  373 (694)
                      ++.+...+|.+|++|+.+.|..+ ++.+....|.++ +|+.+++.+|.+..+....|.   .+ ..++.|.+..+.+
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~---~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY---GFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC---CSCTTCCEEEECGGGH
T ss_pred             eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc---CCCCCccEEEeCHHHH
Confidence            66677777777777777777543 666666677777 777777777777766666665   44 3566777766553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.73  E-value=1.1e-16  Score=167.71  Aligned_cols=259  Identities=19%  Similarity=0.227  Sum_probs=122.1

Q ss_pred             CCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhh
Q psy3329          52 LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWT  131 (694)
Q Consensus        52 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  131 (694)
                      ++.|...+|.++.+|+.+.+.. .++.|...+|.+|++|+.+++.++ ++.+...+|..+.+|+.+.+..+ +..++.  
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~--  133 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV--  133 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT--
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc--
Confidence            4445555666666666666653 355555566666666666666533 55555556666666665555433 222222  


Q ss_pred             hhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhc
Q psy3329         132 LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN  211 (694)
Q Consensus       132 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  211 (694)
                      ..|.++..++....  ..+..+...+|.++++|+.+.+..+. ..+....|.  .+.+|+.+.+..+ + ..+....|..
T Consensus       134 ~aF~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~--~c~~L~~i~l~~~-~-~~I~~~~F~~  206 (394)
T 4fs7_A          134 EAFKGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFS--GCGKLKSIKLPRN-L-KIIRDYCFAE  206 (394)
T ss_dssp             TTTTTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTT--TCTTCCBCCCCTT-C-CEECTTTTTT
T ss_pred             eeeecccccccccC--ccccccchhhhcccCCCcEEecCCcc-ceecccccc--CCCCceEEEcCCC-c-eEeCchhhcc
Confidence            23344432222211  12233444556666666666665432 222222222  3445555555443 1 3334445666


Q ss_pred             CCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEE
Q psy3329         212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL  291 (694)
Q Consensus       212 ~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  291 (694)
                      +..|+.+.+..+......   ......+|+.+.+... ++.+...+|..+..|+.+.+..+                   
T Consensus       207 ~~~L~~i~~~~~~~~i~~---~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-------------------  263 (394)
T 4fs7_A          207 CILLENMEFPNSLYYLGD---FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-------------------  263 (394)
T ss_dssp             CTTCCBCCCCTTCCEECT---TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-------------------
T ss_pred             ccccceeecCCCceEeeh---hhcccCCCceEEECCC-ceecccccccccccceeEEcCCC-------------------
Confidence            666666655543221111   1122344555554322 33333344444555555444433                   


Q ss_pred             ECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccc
Q psy3329         292 DMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFH  355 (694)
Q Consensus       292 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  355 (694)
                            ...+....|..+..++.+.+..+.   ++...|..+.+|+.+.+.++ ++.++...|.
T Consensus       264 ------~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~  317 (394)
T 4fs7_A          264 ------KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFE  317 (394)
T ss_dssp             ------TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred             ------cceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhc
Confidence                  223333445555555555554433   22334555666666666543 4445554444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.8e-17  Score=155.49  Aligned_cols=152  Identities=16%  Similarity=0.205  Sum_probs=91.0

Q ss_pred             CCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEE
Q psy3329          14 LDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYL   93 (694)
Q Consensus        14 ~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L   93 (694)
                      .++++|+.|++++|.++.+| .+..+++|++|++++|.+..+  ..+..+++|++|++++|.++...+..|..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            44556666666666666666 456666666666666655443  245666666666666666665444456666666666


Q ss_pred             eCCCCcCCccChhhhcCCCCCCEEECCCCc-CCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCC
Q psy3329          94 MLNRCNLTYISPSAFDNLNHLKTLELSQNK-LKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN  172 (694)
Q Consensus        94 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  172 (694)
                      ++++|.+++..+..+..+++|+.|++++|. +..+   + .+..+++|++|++++|.++.++  .+..+++|++|++++|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~---~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI---M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC---G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc---H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence            666666666555666666666666666665 4432   1 3555666666666666666544  3455555555555555


Q ss_pred             CC
Q psy3329         173 EL  174 (694)
Q Consensus       173 ~l  174 (694)
                      .+
T Consensus       192 ~i  193 (197)
T 4ezg_A          192 TI  193 (197)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=5.2e-18  Score=166.82  Aligned_cols=62  Identities=31%  Similarity=0.439  Sum_probs=29.7

Q ss_pred             CCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCccc
Q psy3329         284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRL  349 (694)
Q Consensus       284 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  349 (694)
                      .+++|++|++++|.++.+.  .+..+++|+.|+|++|.++++++  +..+++|+.|++++|+++++
T Consensus        39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l  100 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL  100 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC
T ss_pred             hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc
Confidence            3344444444444444433  34444555555555555554443  44455555555555554443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.72  E-value=3.7e-16  Score=162.68  Aligned_cols=157  Identities=20%  Similarity=0.366  Sum_probs=87.7

Q ss_pred             CChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcC
Q psy3329         204 LSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS  283 (694)
Q Consensus       204 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  283 (694)
                      ++...|.++ +|+.+.+..+ ++.+.... +.. .+|+.+.+.. .++.+...+|.+|++|+.+++..|.+......+|.
T Consensus       127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~a-F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~  201 (401)
T 4fdw_A          127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMA-FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV  201 (401)
T ss_dssp             ECTTTTTTC-CCSEEECCTT-CCEECTTT-TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred             ehHhhcccC-CccEEEeCCC-ccEECHHh-cCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence            344445554 5666666544 44433332 233 2466666654 55556556666666666666666666555555555


Q ss_pred             CCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCC
Q psy3329         284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDL  363 (694)
Q Consensus       284 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L  363 (694)
                       +.+|+.+.|.. .+..+...+|.+|++|+.+++..+ ++.+....|.+ .+|+.+.+ .+.++.++...|.   .+++|
T Consensus       202 -~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~---~c~~L  273 (401)
T 4fdw_A          202 -YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFY---YCPEL  273 (401)
T ss_dssp             -TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTT---TCTTC
T ss_pred             -ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhh---CCCCC
Confidence             35666666653 355666666666666666666653 45555555555 55666666 3345555555555   55555


Q ss_pred             CeeeCCCCCC
Q psy3329         364 EELRLSGNPL  373 (694)
Q Consensus       364 ~~L~Ls~n~l  373 (694)
                      +.+++.+|.+
T Consensus       274 ~~l~l~~~~~  283 (401)
T 4fdw_A          274 AEVTTYGSTF  283 (401)
T ss_dssp             CEEEEESSCC
T ss_pred             CEEEeCCccc
Confidence            5555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.71  E-value=8e-17  Score=146.85  Aligned_cols=120  Identities=32%  Similarity=0.547  Sum_probs=111.5

Q ss_pred             CCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCc
Q psy3329         418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE  497 (694)
Q Consensus       418 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~  497 (694)
                      ..+.+++++|.++.++...     .++|+.|+|++|.|+++++..|.++++|++|+|++|+|+++.+..|   ..+++|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~-----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f---~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI-----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF---DKLTQLT   81 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT---TTCTTCC
T ss_pred             CCCEEEeCCCCcCccCccC-----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc---cCCCCCC
Confidence            3578999999999987543     3789999999999999999999999999999999999999999888   8899999


Q ss_pred             EEECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         498 SLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       498 ~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      +|+|++|+|+++++..+..+++|+.|++++|+|.|+|+ +.|+..|+..
T Consensus        82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~  130 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQ  130 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred             EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHh
Confidence            99999999999999889999999999999999999996 9999999987

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.6e-19  Score=196.67  Aligned_cols=101  Identities=25%  Similarity=0.239  Sum_probs=58.2

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCc-chhhhhhcccC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTS-ELSFQFLDVLL  494 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~l~  494 (694)
                      +++|+.|+|++|.++.++ ..+  +.+++|+.|+|++|.|++++  .++++++|+.|+|++|+|++.+ |..+   ..++
T Consensus       462 l~~L~~L~Ls~N~l~~lp-~~~--~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l---~~l~  533 (567)
T 1dce_A          462 LLLVTHLDLSHNRLRALP-PAL--AALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPL---VSCP  533 (567)
T ss_dssp             GTTCCEEECCSSCCCCCC-GGG--GGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGG---GGCT
T ss_pred             cccCcEeecCcccccccc-hhh--hcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHH---hcCC
Confidence            445555555555555332 233  55666666666666666643  4566666666666666666665 5555   5666


Q ss_pred             CCcEEECCCCcccccChh---hhcCCCcccEEE
Q psy3329         495 ELESLDLSNNNLTHISPT---VLRHNRAITSIK  524 (694)
Q Consensus       495 ~L~~L~ls~N~l~~~~~~---~~~~~~~l~~l~  524 (694)
                      +|+.|+|++|++++.+|.   .+..+++|+.|+
T Consensus       534 ~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            666666666666665442   223356666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.67  E-value=4e-16  Score=142.66  Aligned_cols=119  Identities=29%  Similarity=0.503  Sum_probs=110.0

Q ss_pred             CceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcE
Q psy3329         419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELES  498 (694)
Q Consensus       419 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~  498 (694)
                      -+.+++++|.++.++...     .++|+.|+|++|.|+++++..|.++++|+.|+|++|+|+++++..|   ..+++|+.
T Consensus        14 ~~~l~~~~n~l~~iP~~~-----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~---~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI-----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF---DKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCE
T ss_pred             CcEEEeCCCCCCccCCCc-----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh---CCcchhhE
Confidence            478999999998887643     3789999999999999999999999999999999999999988877   88999999


Q ss_pred             EECCCCcccccChhhhcCCCcccEEEccCCccccccC-cHHHHHHHHh
Q psy3329         499 LDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN-IADMWEWATR  545 (694)
Q Consensus       499 L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~-~~~~~~~~~~  545 (694)
                      |+|++|+|+++++..+..+++|+.+++++|+|.|+|. +.|+..|+..
T Consensus        86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~  133 (174)
T 2r9u_A           86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVAD  133 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred             EECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHh
Confidence            9999999999988889999999999999999999996 8999999876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=3.3e-16  Score=146.86  Aligned_cols=152  Identities=16%  Similarity=0.215  Sum_probs=83.1

Q ss_pred             cCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcE
Q psy3329         211 NATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEH  290 (694)
Q Consensus       211 ~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  290 (694)
                      .+++|+.|++++|.++..+   .+..+++|++|++++|.++.++  .+..+++|+.|++++|.+.+..+..+..+++|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3445555555555554332   2344555555555555544442  3455556666666666655555555555666666


Q ss_pred             EECcCCCCcccChhhhcCCCCCcEEeccCCc-ccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCC
Q psy3329         291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNK-LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS  369 (694)
Q Consensus       291 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls  369 (694)
                      |++++|.++...+..+..+++|++|++++|. ++.++  .+..+++|+.|++++|.++.++  .+.   .+++|+.|+++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~---~l~~L~~L~l~  189 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIE---DFPKLNQLYAF  189 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGG---GCSSCCEEEEC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--Hhc---cCCCCCEEEee
Confidence            6666666655555555666666666666665 55443  2555666666666666666544  222   45666666666


Q ss_pred             CCCCc
Q psy3329         370 GNPLH  374 (694)
Q Consensus       370 ~n~l~  374 (694)
                      +|++.
T Consensus       190 ~N~i~  194 (197)
T 4ezg_A          190 SQTIG  194 (197)
T ss_dssp             BC---
T ss_pred             CcccC
Confidence            66654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=3.4e-16  Score=153.77  Aligned_cols=169  Identities=21%  Similarity=0.275  Sum_probs=131.9

Q ss_pred             CCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEe
Q psy3329          15 DNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM   94 (694)
Q Consensus        15 ~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~   94 (694)
                      ++.++..++++.+.++.++ .+..+++|++|++++|.++.+.  .+..+++|++|++++|.++.+++  +..+++|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            3556777778888888877 5777888888888888888764  57888888888888888888766  78888888888


Q ss_pred             CCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCC
Q psy3329          95 LNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENEL  174 (694)
Q Consensus        95 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l  174 (694)
                      +++|.++++.+  +.. ++|+.|++++|.++.+.    .+..+++|+.|++++|.+++++  .+..+++|+.|++++|.+
T Consensus        92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCC
T ss_pred             CCCCccCCcCc--ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcC
Confidence            88888888643  333 78888888888887542    4778888888888888888774  477888888888888888


Q ss_pred             CCcchhhhcccCCCcccEEeCCCCCCC
Q psy3329         175 IDLDVATTLGQNLVHLDSLDLSNCHLK  201 (694)
Q Consensus       175 ~~~~~~~~~~~~~~~L~~L~l~~n~~~  201 (694)
                      .+..   .+ ..+++|+.|++++|.+.
T Consensus       163 ~~~~---~l-~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          163 TNTG---GL-TRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CBCT---TS-TTCCCCCEEEEEEEEEE
T ss_pred             cchH---Hh-ccCCCCCEEeCCCCccc
Confidence            7762   22 26788888888888874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=6.6e-19  Score=191.90  Aligned_cols=125  Identities=25%  Similarity=0.293  Sum_probs=82.8

Q ss_pred             CCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCC
Q psy3329         335 HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENY  414 (694)
Q Consensus       335 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~  414 (694)
                      .|+.|++++|.+++++.  +.   .+++|+.|++++|.++.+|.            .                  +..  
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~---~l~~L~~L~Ls~N~l~~lp~------------~------------------~~~--  484 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LE---QLLLVTHLDLSHNRLRALPP------------A------------------LAA--  484 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GG---GGTTCCEEECCSSCCCCCCG------------G------------------GGG--
T ss_pred             CceEEEecCCCCCCCcC--cc---ccccCcEeecCcccccccch------------h------------------hhc--
Confidence            46777777777777654  43   56777777777777764432            1                  122  


Q ss_pred             CCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccC-CCCCCCCCCCCEEEccCCccCCCcchhhhhhccc
Q psy3329         415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP-PNVFNNTRNITSLNLANNNLSMTSELSFQFLDVL  493 (694)
Q Consensus       415 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l  493 (694)
                       +++|+.|+|++|.+++++  .+  ..+++|+.|+|++|.|++++ |..+..+++|+.|+|++|.+++.++........+
T Consensus       485 -l~~L~~L~Ls~N~l~~lp--~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l  559 (567)
T 1dce_A          485 -LRCLEVLQASDNALENVD--GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML  559 (567)
T ss_dssp             -CTTCCEEECCSSCCCCCG--GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred             -CCCCCEEECCCCCCCCCc--cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence             677777777777777754  44  66777777777777777775 6667777777777777777777665433333456


Q ss_pred             CCCcEEEC
Q psy3329         494 LELESLDL  501 (694)
Q Consensus       494 ~~L~~L~l  501 (694)
                      ++|+.||+
T Consensus       560 p~L~~L~l  567 (567)
T 1dce_A          560 PSVSSILT  567 (567)
T ss_dssp             TTCSEEEC
T ss_pred             cccCccCC
Confidence            77777754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.64  E-value=3.1e-16  Score=161.52  Aligned_cols=119  Identities=22%  Similarity=0.373  Sum_probs=110.4

Q ss_pred             ceEEcCCC-CCcccCCCCCCCcCCCCccEEEccC-CcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCc
Q psy3329         420 EELRLSGN-PLHVLPTGNLLPPQLSRLRSLDLSR-CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELE  497 (694)
Q Consensus       420 ~~L~Ls~n-~l~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~  497 (694)
                      ..++++++ .++.++.  +  ..+++|+.|+|++ |.|+++++..|.++++|+.|+|++|+|++++|..|   ..+++|+
T Consensus        11 ~~v~~~~~n~l~~ip~--l--~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--L--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF---HFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCTTTTT--S--CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG---GSCSCCC
T ss_pred             CEEEcCCCCCCCccCC--C--CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh---cCCcCCC
Confidence            45789998 8999877  6  7899999999996 99999999999999999999999999999999988   8999999


Q ss_pred             EEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329         498 SLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       498 ~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~  546 (694)
                      .|+|++|+|+++++..+..++ |+.|++.+|+|.|+|++.|+..|.+..
T Consensus        84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~  131 (347)
T 2ifg_A           84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEG  131 (347)
T ss_dssp             EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTT
T ss_pred             EEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhC
Confidence            999999999999988888776 999999999999999999999998763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.63  E-value=3.6e-14  Score=148.56  Aligned_cols=332  Identities=14%  Similarity=0.216  Sum_probs=181.9

Q ss_pred             ccCcccCCCC-CceEEECcCCCCcchh-hhhhcCCCCcEEEccCC---cCCccChhhccCCCCCCeEECCCCCCCccCCC
Q psy3329           8 YNDRRNLDNP-GLITINLNANPIQPVE-GAFLVARSLLYLYMQEC---TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPG   82 (694)
Q Consensus         8 ~~~~~~~~~~-~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~   82 (694)
                      +.+.+|.+++ .|+.+.+.. .++.|. .+|.+|.+|+.+.+..+   .++.+...+|..+.+|+.+.+..+ ++.+...
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~  131 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE  131 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred             cCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence            3456677664 477777754 366665 66777777777777654   355666667777777777666543 5566666


Q ss_pred             CCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCC
Q psy3329          83 VFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNT  162 (694)
Q Consensus        83 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~  162 (694)
                      +|..+.+|+.+.+.. .+..+...+|..+.+|+.+.+..+ +..++.  ..+. ...|+.+.+..+ +..+...+|..+.
T Consensus       132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~--~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~  205 (394)
T 4gt6_A          132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEE--RAFT-GTALTQIHIPAK-VTRIGTNAFSECF  205 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTT-TCCCSEEEECTT-CCEECTTTTTTCT
T ss_pred             hhhhhcccccccccc-eeeeecccceecccccccccccce-eeEecc--cccc-ccceeEEEECCc-ccccccchhhhcc
Confidence            677777777777753 355555666777777777777544 333332  2232 345666666543 3344455566666


Q ss_pred             CCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccE
Q psy3329         163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHR  242 (694)
Q Consensus       163 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  242 (694)
                      .++............+...+..........              ..+.....+..+.+... +..+.. ..+..+..|+.
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ip~~-v~~i~~-~aF~~c~~L~~  269 (394)
T 4gt6_A          206 ALSTITSDSESYPAIDNVLYEKSANGDYAL--------------IRYPSQREDPAFKIPNG-VARIET-HAFDSCAYLAS  269 (394)
T ss_dssp             TCCEEEECCSSSCBSSSCEEEECTTSCEEE--------------EECCTTCCCSEEECCTT-EEEECT-TTTTTCSSCCE
T ss_pred             ccceecccccccccccceeecccccccccc--------------cccccccccceEEcCCc-ceEccc-ceeeecccccE
Confidence            666666554433322111110000000000              00111222333333221 111111 13456666666


Q ss_pred             EEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcc
Q psy3329         243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL  322 (694)
Q Consensus       243 L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  322 (694)
                      +.+..+ +..+...+|.++++|+.+.+. +.+......+|.++.+|+.+.|.. .++.+...+|.+|.+|+.+.|..+ +
T Consensus       270 i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v  345 (394)
T 4gt6_A          270 VKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-V  345 (394)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-C
T ss_pred             Eecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-c
Confidence            666543 334555667777777777775 335555556677777777777764 366777777778888888877643 6


Q ss_pred             cCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCC
Q psy3329         323 ETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL  373 (694)
Q Consensus       323 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l  373 (694)
                      +.+...+|.+|++|+.+++.++....   ..|.   .+.+|+.+.+..+.+
T Consensus       346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~---~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          346 TKIPESAFSNCTALNNIEYSGSRSQW---NAIS---TDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CBCCGGGGTTCTTCCEEEESSCHHHH---HTCB---CCCCC----------
T ss_pred             CEEhHhHhhCCCCCCEEEECCceeeh---hhhh---ccCCCCEEEeCCCCE
Confidence            67777777888888888777664221   1222   566777777766543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.63  E-value=2.4e-14  Score=149.94  Aligned_cols=301  Identities=17%  Similarity=0.285  Sum_probs=167.9

Q ss_pred             CccChhhccCCC-CCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC---cCCccChhhhcCCCCCCEEECCCCcCCccc
Q psy3329          53 SKINPQFFTNLT-TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC---NLTYISPSAFDNLNHLKTLELSQNKLKSHI  128 (694)
Q Consensus        53 ~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~  128 (694)
                      +.|...+|.++. .|+.+.+..+ ++.|...+|.+|.+|+.+.+..+   .++.+...+|..+.+|+.+.+..+ ++.++
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence            344445555543 3555555432 55555555555555555555543   244454555555555555555433 22222


Q ss_pred             hhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhh
Q psy3329         129 DWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDA  208 (694)
Q Consensus       129 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  208 (694)
                      .  ..+.++.+|+.+.+.. .+..+...+|..+..|+.+.+..+ +..+....|.   ...|+.+.+..+.  ..+....
T Consensus       130 ~--~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~---~~~l~~i~ip~~~--~~i~~~a  200 (394)
T 4gt6_A          130 S--EAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT---GTALTQIHIPAKV--TRIGTNA  200 (394)
T ss_dssp             T--TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT---TCCCSEEEECTTC--CEECTTT
T ss_pred             h--hhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEecccccc---ccceeEEEECCcc--cccccch
Confidence            2  3345555666665542 334455555666666666665543 3333333332   2345555554432  2233345


Q ss_pred             hhcCCCCcEEEcCCCCCCccchhh------------hccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcc
Q psy3329         209 FVNATKLRTLYLSGNPLSAADLSV------------ALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLID  276 (694)
Q Consensus       209 ~~~~~~L~~L~L~~n~l~~~~~~~------------~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~  276 (694)
                      |..+.+++................            .......+..+.+. +.++.+...+|..+..|+.+.+..+. ..
T Consensus       201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~-~~  278 (394)
T 4gt6_A          201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV-VS  278 (394)
T ss_dssp             TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC-CE
T ss_pred             hhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccc-ce
Confidence            666666666665544332211100            00112233344432 23445555677778888888776543 34


Q ss_pred             cchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCcccccc
Q psy3329         277 AFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHE  356 (694)
Q Consensus       277 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  356 (694)
                      ....+|.++++|+.+.+. +.++.+...+|.+|.+|+.+.|..+ ++.+....|.+|.+|+.+.+..+ ++.++..+|. 
T Consensus       279 I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~-  354 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS-  354 (394)
T ss_dssp             ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT-
T ss_pred             ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh-
Confidence            445567777788888775 4566777777888888888887653 66677777777888888877643 6777777776 


Q ss_pred             CCCCCCCCeeeCCCCC
Q psy3329         357 NYTYPDLEELRLSGNP  372 (694)
Q Consensus       357 ~~~~~~L~~L~Ls~n~  372 (694)
                        +|.+|+.+++.++.
T Consensus       355 --~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          355 --NCTALNNIEYSGSR  368 (394)
T ss_dssp             --TCTTCCEEEESSCH
T ss_pred             --CCCCCCEEEECCce
Confidence              67777777776653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.3e-15  Score=137.19  Aligned_cols=136  Identities=24%  Similarity=0.210  Sum_probs=78.9

Q ss_pred             CCCCcEEEccCCcCC-ccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329          39 ARSLLYLYMQECTLS-KINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL  117 (694)
Q Consensus        39 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  117 (694)
                      .++|++|++++|.+. +..|..+..+++|++|++++|.++.+  ..+..+++|++|++++|.+++..|..+.++++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            355666666666655 22244455566666666666666555  335566666666666666666445555556666666


Q ss_pred             ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCc---cccCCCCCCcEEeCCCCCCCCc
Q psy3329         118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD---NVFANNTWLRNLNLAENELIDL  177 (694)
Q Consensus       118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~~n~l~~~  177 (694)
                      ++++|.++.+.. +..+..+++|++|++++|.++.+++   ..+..+++|++|++++|.+...
T Consensus       101 ~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          101 NLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             ECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             eccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            666666654321 1345566666666666666666555   4556666666666666655443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=6.3e-15  Score=137.33  Aligned_cols=128  Identities=25%  Similarity=0.368  Sum_probs=85.8

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChh-hccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQ-FFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      ++++++++.++.+|..+.  .++++|++++|.++.+.+. .|..+++|++|+|++|.++++.+..|..+++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            577778777777775442  3677777777777777654 4677777777777777777776666777777777777777


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCC
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS  151 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~  151 (694)
                      .++++.+..|..+++|+.|++++|+++..  .+..+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCV--MPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEE--CTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCee--CHHHhhcCCCCCEEEeCCCCcc
Confidence            77777666666667777777766666632  2244555555555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=1.9e-14  Score=133.94  Aligned_cols=127  Identities=21%  Similarity=0.353  Sum_probs=88.8

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN   99 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~   99 (694)
                      +.++++++.++.+|..+  .++|++|++++|.++.+. ..|..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            56788888888887543  357888888888777663 677778888888888888877777777777788888888777


Q ss_pred             CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCC
Q psy3329         100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS  151 (694)
Q Consensus       100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~  151 (694)
                      ++++.+.+|..+++|+.|++++|.++.+..  ..+..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCee
Confidence            777777777777777777777776664332  23445555555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=7.7e-15  Score=133.72  Aligned_cols=113  Identities=28%  Similarity=0.356  Sum_probs=48.9

Q ss_pred             cCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCc-hhhcCCCCCC
Q psy3329         259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLES-GLFQNLTHLS  337 (694)
Q Consensus       259 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~  337 (694)
                      ..+++|+.|++++|.+.+.  ..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++++. ..+..+++|+
T Consensus        46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            3344444444444443333  333444444444444444444333333344444444444444444322 3344444444


Q ss_pred             EEeCCCCCCcccCc---cccccCCCCCCCCeeeCCCCCCcCC
Q psy3329         338 VLELNNCGLTRLNE---TVFHENYTYPDLEELRLSGNPLHVL  376 (694)
Q Consensus       338 ~L~L~~n~l~~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~  376 (694)
                      .|++++|.++.++.   ..+.   .+++|+.|++++|.+..+
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~~---~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVFK---LLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHHT---TCSSCCEETTEETTSCBC
T ss_pred             EEEeeCCcCcchHHHHHHHHH---hCccCcEecCCCCChhhc
Confidence            44444444444443   2232   344555555555444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=3.6e-14  Score=130.49  Aligned_cols=127  Identities=31%  Similarity=0.422  Sum_probs=69.6

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN   99 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~   99 (694)
                      +.++++++.++.+|..+  .++|++|++++|.++++.+..|..+++|++|++++|.++.+++..|..+++|++|++++|.
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            55666666666666322  2456666666666666555555666666666666666665555555556666666666666


Q ss_pred             CCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCC
Q psy3329         100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGI  150 (694)
Q Consensus       100 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i  150 (694)
                      ++++++..+..+++|+.|++++|.++.+..  ..+..+++|++|++++|.+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCB
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCe
Confidence            655555555555555555555555443221  2233344444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=7.7e-16  Score=173.17  Aligned_cols=90  Identities=27%  Similarity=0.300  Sum_probs=40.4

Q ss_pred             hhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCC
Q psy3329         279 TALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENY  358 (694)
Q Consensus       279 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  358 (694)
                      +..+..++.|+.|+|++|.+..++...+ .+++|+.|+|++|.++.++ ..|..+++|+.|+|++|.|+.++... .   
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~-~---  290 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAEL-G---  290 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSG-G---
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccChhh-c---
Confidence            3444455555555555555554443322 4555555555555555333 23445555555555555555443322 2   


Q ss_pred             CCCCCCeeeCCCCCCc
Q psy3329         359 TYPDLEELRLSGNPLH  374 (694)
Q Consensus       359 ~~~~L~~L~Ls~n~l~  374 (694)
                      .+++|+.|+|++|.++
T Consensus       291 ~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             GGTTCSEEECCSSCCC
T ss_pred             CCCCCCEEECCCCCCC
Confidence            3444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1.4e-14  Score=129.02  Aligned_cols=129  Identities=23%  Similarity=0.177  Sum_probs=94.3

Q ss_pred             CCCCcEEEccCCcCC-ccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEE
Q psy3329          39 ARSLLYLYMQECTLS-KINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTL  117 (694)
Q Consensus        39 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  117 (694)
                      .++|+.|++++|.+. +..|..+..+++|++|++++|.++.+  ..+..+++|++|++++|.+++..|..+..+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            466788888888777 34456677788888888888887776  447778888888888888887667777778888888


Q ss_pred             ECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCc---cccCCCCCCcEEeCC
Q psy3329         118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD---NVFANNTWLRNLNLA  170 (694)
Q Consensus       118 ~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~l~  170 (694)
                      ++++|.++... .+..+..+++|++|++++|.++.+++   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChH-HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888776432 22557777888888888887777765   456667777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.6e-14  Score=132.72  Aligned_cols=137  Identities=17%  Similarity=0.209  Sum_probs=70.2

Q ss_pred             cccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC
Q psy3329          11 RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL   90 (694)
Q Consensus        11 ~~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L   90 (694)
                      ..|.++++|+.|++++|.++.++......++|++|++++|.++++  ..+..+++|++|++++|.++.+++..|..+++|
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            345556666666666666665543222233566666666655554  345555555555555555555544444555555


Q ss_pred             CEEeCCCCcCCccCh-hhhcCCCCCCEEECCCCcCCccchh-hhhhcCCCCCCEEEccCCC
Q psy3329          91 EYLMLNRCNLTYISP-SAFDNLNHLKTLELSQNKLKSHIDW-TLVLGNLGKLDTLDLRQSG  149 (694)
Q Consensus        91 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~  149 (694)
                      ++|++++|.++.+++ ..+..+++|+.|++++|.+...... ...+..+++|+.|++++|.
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            555555555554422 2445555555555555555432211 0124444555555544443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=4.4e-15  Score=167.05  Aligned_cols=213  Identities=18%  Similarity=0.192  Sum_probs=80.6

Q ss_pred             CCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcc---------cChhhhcCCCCCcEEeccCCcccCcCchhhcC
Q psy3329         262 TCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR---------ISRSTFLKMTSLKTLILSGNKLETLESGLFQN  332 (694)
Q Consensus       262 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  332 (694)
                      +.++.|+|.+|.+......      .++.++|+.|.|..         +.+..|..+++|+.|+|++|.+..++...+ .
T Consensus       173 ~~~~~l~L~~n~~~~~~~~------~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA------LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-K  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-G
T ss_pred             CccceEEeeCCCCCcchhh------HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-C
Confidence            4577788877776653221      23334444443332         334556666667777777776666555433 5


Q ss_pred             CCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhccccccc
Q psy3329         333 LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHE  412 (694)
Q Consensus       333 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~  412 (694)
                      +++|+.|+|++|.|+.++.. +.   .+++|+.|+|++|.|+.+|.            .                  +..
T Consensus       246 l~~L~~L~Ls~N~l~~lp~~-~~---~l~~L~~L~Ls~N~l~~lp~------------~------------------~~~  291 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLTELPAE-IK---NLSNLRVLDLSHNRLTSLPA------------E------------------LGS  291 (727)
T ss_dssp             CCSCSCCBCTTSCCSCCCGG-GG---GGTTCCEEECTTSCCSSCCS------------S------------------GGG
T ss_pred             CCCCCEEEeeCCcCcccChh-hh---CCCCCCEEeCcCCcCCccCh------------h------------------hcC
Confidence            66677777777766655533 23   56666666666666654432            1                  111


Q ss_pred             CCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCC-CCEEEccCCccCCCcchhhhhhc
Q psy3329         413 NYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRN-ITSLNLANNNLSMTSELSFQFLD  491 (694)
Q Consensus       413 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~  491 (694)
                         +++|+.|+|++|.++.++.. |  ..+++|+.|+|++|.|++.++..+..+.. +..|+|++|.+++.+|.      
T Consensus       292 ---l~~L~~L~L~~N~l~~lp~~-~--~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------  359 (727)
T 4b8c_D          292 ---CFQLKYFYFFDNMVTTLPWE-F--GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------  359 (727)
T ss_dssp             ---GTTCSEEECCSSCCCCCCSS-T--TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------
T ss_pred             ---CCCCCEEECCCCCCCccChh-h--hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------
Confidence               55666666666666655443 4  56666666666666666655554433211 12355666666665543      


Q ss_pred             ccCCCcEEECCCC--------cccccChhhhcCCCcccEEEccCCcc
Q psy3329         492 VLLELESLDLSNN--------NLTHISPTVLRHNRAITSIKLVGNPW  530 (694)
Q Consensus       492 ~l~~L~~L~ls~N--------~l~~~~~~~~~~~~~l~~l~l~~N~~  530 (694)
                         .|+.|+++.|        .+.+..+..+..+..+....++.|-+
T Consensus       360 ---~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          360 ---ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             ---C-----------------------------------------CC
T ss_pred             ---ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence               3455566665        33333333344445555566666765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=3.6e-14  Score=126.41  Aligned_cols=90  Identities=30%  Similarity=0.361  Sum_probs=35.7

Q ss_pred             cCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcC-chhhcCCCCCC
Q psy3329         259 HRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLE-SGLFQNLTHLS  337 (694)
Q Consensus       259 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~  337 (694)
                      ..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++++ +..+..+++|+
T Consensus        39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence            3333444444444433333  23333444444444444444333333333444444444444444332 12334444444


Q ss_pred             EEeCCCCCCcccC
Q psy3329         338 VLELNNCGLTRLN  350 (694)
Q Consensus       338 ~L~L~~n~l~~~~  350 (694)
                      .|++++|.+++++
T Consensus       117 ~L~l~~N~l~~~~  129 (149)
T 2je0_A          117 SLDLFNCEVTNLN  129 (149)
T ss_dssp             EEECTTCGGGGST
T ss_pred             EEeCcCCcccchH
Confidence            4444444444433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.49  E-value=3.6e-12  Score=132.76  Aligned_cols=303  Identities=13%  Similarity=0.191  Sum_probs=185.9

Q ss_pred             hhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCC
Q psy3329          35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL  114 (694)
Q Consensus        35 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  114 (694)
                      .+....+|+.+.+.. .++.|...+|.+|.+|+.++|..+ ++.|...+|.++ +|+.+.+.. .++.+...+|..+ +|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cc
Confidence            455667788888875 577888888888888888888654 777888888877 677777764 3666666777665 78


Q ss_pred             CEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhc----------c
Q psy3329         115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL----------G  184 (694)
Q Consensus       115 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----------~  184 (694)
                      +.+.+..+ +..++.  ..+.++ +|+.+.+.. .++.+....|..+..++.+.+..+...........          .
T Consensus       116 ~~i~lp~~-~~~i~~--~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (379)
T 4h09_A          116 DDFEFPGA-TTEIGN--YIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY  190 (379)
T ss_dssp             SEEECCTT-CCEECT--TTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred             ccccCCCc-cccccc--cccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence            88888765 332232  234443 566665553 35566667777888888877765433211110000          0


Q ss_pred             cCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCc
Q psy3329         185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCL  264 (694)
Q Consensus       185 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L  264 (694)
                      ..+..+..+.+....  ..+....+..+.+|+.+.+..+ +..+... .+..+..|+.+.+..+ ++.+...+|..+.+|
T Consensus       191 ~~~~~~~~~~~~~~~--~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~-~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l  265 (379)
T 4h09_A          191 PAAKTGTEFTIPSTV--KTVTAYGFSYGKNLKKITITSG-VTTLGDG-AFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL  265 (379)
T ss_dssp             CTTCCCSEEECCTTC--CEECTTTTTTCSSCSEEECCTT-CCEECTT-TTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             cccccccccccccce--eEEeecccccccccceeeeccc-eeEEccc-cccCCccceEEEcCCC-ccEeCccccceeehh
Confidence            123334444443322  1222334556667777766543 2222222 3456667777777554 566666667777777


Q ss_pred             cEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCC
Q psy3329         265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC  344 (694)
Q Consensus       265 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  344 (694)
                      +.+.+..+ +......+|.++.+|+.+.+..+.++.+...+|.+|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..+
T Consensus       266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            77776543 44444556667777777777766677777777777777777777643 66666666777777777777543


Q ss_pred             CCcccCccccc
Q psy3329         345 GLTRLNETVFH  355 (694)
Q Consensus       345 ~l~~~~~~~~~  355 (694)
                       ++.+...+|.
T Consensus       344 -v~~I~~~aF~  353 (379)
T 4h09_A          344 -ITLIESGAFE  353 (379)
T ss_dssp             -CCEECTTTTT
T ss_pred             -cCEEchhHhh
Confidence             5666666664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=5.3e-14  Score=129.11  Aligned_cols=137  Identities=22%  Similarity=0.229  Sum_probs=106.8

Q ss_pred             hhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCC
Q psy3329          35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL  114 (694)
Q Consensus        35 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  114 (694)
                      .+..+.+|++|++++|.++.+ +......++|++|++++|.++++  ..|..+++|++|++++|.++++++..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            456788899999999998877 44333334999999999999887  358889999999999999998876777889999


Q ss_pred             CEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCcc---ccCCCCCCcEEeCCCCCCC
Q psy3329         115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDN---VFANNTWLRNLNLAENELI  175 (694)
Q Consensus       115 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~~~~L~~L~l~~n~l~  175 (694)
                      +.|++++|.+..++.+ ..+..+++|+.|++++|.+..++..   .+..+++|+.|+++.|...
T Consensus        91 ~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCCcchhh-HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999988754331 2577888899999998888877654   4667777777777777644

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.46  E-value=1.1e-11  Score=129.13  Aligned_cols=307  Identities=13%  Similarity=0.152  Sum_probs=222.2

Q ss_pred             cccCCCCCceEEECcCCCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCC
Q psy3329          11 RRNLDNPGLITINLNANPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTS   89 (694)
Q Consensus        11 ~~~~~~~~L~~L~Ls~~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~   89 (694)
                      +.|....+|+.+.+.. .++.|+ .+|.+|.+|+.+.|.. .++.+...+|.++ .|+.+.+.. .+..+...+|..+ +
T Consensus        40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~  114 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-D  114 (379)
T ss_dssp             TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-C
T ss_pred             cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-C
Confidence            3456667888888864 577887 7899999999999975 4888888889887 688887764 4777878888765 7


Q ss_pred             CCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCC------------CCccc
Q psy3329          90 LEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISN------------LPDNV  157 (694)
Q Consensus        90 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~------------~~~~~  157 (694)
                      |+.+.+..+ ++.+...+|.++ +|+.+.+..+ ++.++.  ..+.++.+++.+.+.......            .....
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~--~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKD--GIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES  189 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECS--CTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred             cccccCCCc-cccccccccccc-eeeeeeccce-eecccc--chhcccccccccccccccceeecccceecccccceecc
Confidence            999998764 555556667665 5666666543 333332  346677888887776543321            11223


Q ss_pred             cCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCC
Q psy3329         158 FANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL  237 (694)
Q Consensus       158 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l  237 (694)
                      +..+..+..+.+..... ......+  ..+.+|+.+.+..+-  ..+....|..+..|+.+.+..+ ++.+... .+..+
T Consensus       190 ~~~~~~~~~~~~~~~~~-~i~~~~f--~~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~-aF~~~  262 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVK-TVTAYGF--SYGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSF-LLQNC  262 (379)
T ss_dssp             CCTTCCCSEEECCTTCC-EECTTTT--TTCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTT-TTTTC
T ss_pred             cccccccccccccccee-EEeeccc--ccccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCcc-cccee
Confidence            45556666666554321 1111222  257788888886652  4455567888999999999765 4544433 45788


Q ss_pred             CCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEec
Q psy3329         238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLIL  317 (694)
Q Consensus       238 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  317 (694)
                      .+|+.+.+.. .+..+...+|..|++|+.+.+.++.+......+|.++.+|+.+.|.. .++.+...+|.+|.+|+.+.+
T Consensus       263 ~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          263 TALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred             ehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence            9999999965 47778888899999999999998888888888999999999999975 488899999999999999999


Q ss_pred             cCCcccCcCchhhcCCCCCC
Q psy3329         318 SGNKLETLESGLFQNLTHLS  337 (694)
Q Consensus       318 ~~n~l~~~~~~~l~~l~~L~  337 (694)
                      ..+ ++.+...+|.++..++
T Consensus       341 p~~-v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          341 PKS-ITLIESGAFEGSSITK  359 (379)
T ss_dssp             CTT-CCEECTTTTTTSSCCC
T ss_pred             CCc-cCEEchhHhhCCCCCc
Confidence            765 7788888888875443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=4.1e-13  Score=122.13  Aligned_cols=107  Identities=33%  Similarity=0.509  Sum_probs=94.2

Q ss_pred             CceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329          18 GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR   97 (694)
Q Consensus        18 ~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~   97 (694)
                      ..+.++++++.++.+|..+  .++|++|+|++|.++++.+..|..+++|++|+|++|+++.+++..|..+++|++|+|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3578999999999998655  37899999999999999888899999999999999999999888888999999999999


Q ss_pred             CcCCccChhhhcCCCCCCEEECCCCcCCc
Q psy3329          98 CNLTYISPSAFDNLNHLKTLELSQNKLKS  126 (694)
Q Consensus        98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  126 (694)
                      |.++++++..|.++++|+.|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            99999888888899999999999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=6.5e-13  Score=121.18  Aligned_cols=106  Identities=30%  Similarity=0.432  Sum_probs=91.7

Q ss_pred             ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329          19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      -+.++++++.++.+|..+.  ++|++|++++|.++++.|..|.++++|++|+|++|+++.+++..|..+++|++|+|++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3788999999999886553  78999999999999988888899999999999999999888887888999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCc
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKS  126 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~  126 (694)
                      .++++++..|..+++|+.|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            9998877778888889999998888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=3.1e-15  Score=140.38  Aligned_cols=42  Identities=29%  Similarity=0.276  Sum_probs=18.7

Q ss_pred             cCCCCccEEEccCCcCCccCC-CCCCCCCCCCEEEccCCccCC
Q psy3329         440 PQLSRLRSLDLSRCKIDYLPP-NVFNNTRNITSLNLANNNLSM  481 (694)
Q Consensus       440 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~  481 (694)
                      ..+++|+.|++++|.++++++ ..+..+++|++|++++|.+++
T Consensus       112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            334444555555554444322 223444444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=3.8e-13  Score=138.61  Aligned_cols=161  Identities=19%  Similarity=0.192  Sum_probs=94.3

Q ss_pred             CCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccc-----cCCCCccEEeCCCCCCccc----chhhcC
Q psy3329         213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTF-----HRFTCLQELDISHNPLIDA----FTALLS  283 (694)
Q Consensus       213 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~~~~~----~~~~~~  283 (694)
                      ++|+.|+|++|.+++.........+++|+.|++++|.++......+     ...++|+.|+|++|.++..    +...+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            5666777777666655444333445567777777776664433333     2356677777777777552    334445


Q ss_pred             CCCCCcEEECcCCCCcccC----hhhhcCCCCCcEEeccCCcccCcCc----hhhcCCCCCCEEeCCCCCCcccCccccc
Q psy3329         284 PLESLEHLDMGYSNLQRIS----RSTFLKMTSLKTLILSGNKLETLES----GLFQNLTHLSVLELNNCGLTRLNETVFH  355 (694)
Q Consensus       284 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~  355 (694)
                      .+++|++|+|++|.++...    ...+..+++|++|+|++|.++....    ..+..+++|++|+|++|.|+......+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            6777888888887776533    3445566778888888887775433    2344567788888888887765544443


Q ss_pred             cCCCCCC--CCeee--CCCCCC
Q psy3329         356 ENYTYPD--LEELR--LSGNPL  373 (694)
Q Consensus       356 ~~~~~~~--L~~L~--Ls~n~l  373 (694)
                      .......  |+.+.  +..+.+
T Consensus       261 ~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          261 DLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HCC------CEEECCCC----C
T ss_pred             HHhcCCCccchhhHhhhcCCcc
Confidence            2212221  55555  555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=3.9e-14  Score=132.78  Aligned_cols=117  Identities=21%  Similarity=0.284  Sum_probs=60.0

Q ss_pred             CcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhh
Q psy3329          29 IQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAF  108 (694)
Q Consensus        29 l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  108 (694)
                      ++.+|..+..+++|++|++++|.++.+ | .+..+++|++|++++|.++.++. .+..+++|++|++++|.++++ + .+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l-~-~~  111 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL-S-GI  111 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCH-H-HH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcC-C-cc
Confidence            334444555555666666665555554 2 45555555555555555554432 234445555555555555554 2 34


Q ss_pred             cCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCC
Q psy3329         109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS  151 (694)
Q Consensus       109 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~  151 (694)
                      ..+++|+.|++++|.+..++.+ ..+..+++|++|++++|.+.
T Consensus       112 ~~l~~L~~L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSCHHH
T ss_pred             ccCCCCCEEECCCCcCCchhHH-HHHhcCCCCCEEEecCCccc
Confidence            5555555555555555432211 23445555555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.4e-12  Score=134.43  Aligned_cols=161  Identities=19%  Similarity=0.146  Sum_probs=83.8

Q ss_pred             CCCcEEEccCCcCCccChhhcc-----CCCCCCeEECCCCCCCccCCCCC-CCCCCCCEEeCCCCcCCccChhhh-----
Q psy3329          40 RSLLYLYMQECTLSKINPQFFT-----NLTTLNKLDLSGNPLRIIEPGVF-DPLTSLEYLMLNRCNLTYISPSAF-----  108 (694)
Q Consensus        40 ~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l-----  108 (694)
                      +.|+.|++++|.++......+.     ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4566666666665543333222     22466666666666543211111 224456666666666655433333     


Q ss_pred             cCCCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCCCCCC----ccccCCCCCCcEEeCCCCCCCCcchhhh
Q psy3329         109 DNLNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGISNLP----DNVFANNTWLRNLNLAENELIDLDVATT  182 (694)
Q Consensus       109 ~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~  182 (694)
                      ...++|+.|+|++|.++..+  .++..+..+++|++|+|++|.+....    ...+..+++|++|++++|.+++......
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            23456666666666665322  23334455666666666666665322    2234455566666666666654332211


Q ss_pred             c--ccCCCcccEEeCCCCCC
Q psy3329         183 L--GQNLVHLDSLDLSNCHL  200 (694)
Q Consensus       183 ~--~~~~~~L~~L~l~~n~~  200 (694)
                      .  ....++|++|++++|.+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHhCCCCCEEeccCCCC
Confidence            1  11346677777777766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=5e-11  Score=122.44  Aligned_cols=105  Identities=23%  Similarity=0.299  Sum_probs=88.3

Q ss_pred             eEEECcCC-CCcchhhhhhcCCCCcEEEccC-CcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329          20 ITINLNAN-PIQPVEGAFLVARSLLYLYMQE-CTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR   97 (694)
Q Consensus        20 ~~L~Ls~~-~l~~i~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~   97 (694)
                      ..++++++ .++.+|. +..+++|++|+|++ |.++.+.+..|.++++|+.|+|++|.++++++..|.++++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35688887 8888888 88888899999986 888888888888899999999999988888888888888899999998


Q ss_pred             CcCCccChhhhcCCCCCCEEECCCCcCCc
Q psy3329          98 CNLTYISPSAFDNLNHLKTLELSQNKLKS  126 (694)
Q Consensus        98 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  126 (694)
                      |.|+++++..|..++ |+.|++.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            888888777776665 8888888887764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.90  E-value=4.2e-09  Score=89.98  Aligned_cols=70  Identities=27%  Similarity=0.596  Sum_probs=56.2

Q ss_pred             EEEccCCccC--CCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329         471 SLNLANNNLS--MTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       471 ~L~L~~N~l~--~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~  546 (694)
                      .++.+++.++  .++. .+     -++|+.|+|++|+|+.+.+..|..+++|+.|+|.+|||.|||.+.||..|+...
T Consensus        12 ~v~Cs~~~L~~~~vP~-~l-----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~   83 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AF-----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGR   83 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CC-----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred             EEEeCCCCCccccCCC-CC-----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence            5666666666  3332 12     236788888888888888888888999999999999999999999999999873

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.64  E-value=2.7e-08  Score=101.36  Aligned_cols=84  Identities=18%  Similarity=0.301  Sum_probs=46.9

Q ss_pred             CCCCccEEEccCcCCCcCCcccc---cCCCCccEEeCCCCCCccc----chhhcCCCCCCcEEECcCCCCcccChhhhcC
Q psy3329         236 PLTKLHRLSLRNCGLSRLPANTF---HRFTCLQELDISHNPLIDA----FTALLSPLESLEHLDMGYSNLQRISRSTFLK  308 (694)
Q Consensus       236 ~l~~L~~L~l~~n~i~~~~~~~~---~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  308 (694)
                      .+++|+.|++.+|.+.......+   ..+++|+.|+|+.|.+.+.    +...+..+++|+.|+|+.|.++......+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            35666666666666553211111   2356777777777776653    2222234577777777777766444334432


Q ss_pred             -CCCCcEEeccCCc
Q psy3329         309 -MTSLKTLILSGNK  321 (694)
Q Consensus       309 -l~~L~~L~L~~n~  321 (694)
                       +  ...+++++++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3456777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.62  E-value=4.4e-08  Score=99.78  Aligned_cols=137  Identities=18%  Similarity=0.207  Sum_probs=67.8

Q ss_pred             ccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcC--CCCCCcEEECcC--CC------CcccCh
Q psy3329         234 LKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS--PLESLEHLDMGY--SN------LQRISR  303 (694)
Q Consensus       234 l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~L~~--n~------l~~~~~  303 (694)
                      +..+|+|+.|++++|.-..+++  + .+++|+.|++..|.+.......+.  .+|+|++|+|+.  +.      +..+.+
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            3455666666666552112221  2 255666666666665443332232  466666666632  11      111111


Q ss_pred             hhh--cCCCCCcEEeccCCcccCcCchhh---cCCCCCCEEeCCCCCCcccCccccccC-CCCCCCCeeeCCCCCCc
Q psy3329         304 STF--LKMTSLKTLILSGNKLETLESGLF---QNLTHLSVLELNNCGLTRLNETVFHEN-YTYPDLEELRLSGNPLH  374 (694)
Q Consensus       304 ~~~--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~  374 (694)
                       .+  ..+++|+.|+|.+|.+.......+   ..+++|++|+|+.|.+++.....+... ..+++|+.|++++|.++
T Consensus       245 -~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          245 -LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             -GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             -HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             11  235677777776666653222112   235667777777776665322222110 13566777777777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=4.2e-07  Score=83.34  Aligned_cols=68  Identities=19%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             hhcCCCCcEEEcCCC-CCCccchh---hhccCCCCccEEEccCcCCCcCC----cccccCCCCccEEeCCCCCCcc
Q psy3329         209 FVNATKLRTLYLSGN-PLSAADLS---VALKPLTKLHRLSLRNCGLSRLP----ANTFHRFTCLQELDISHNPLID  276 (694)
Q Consensus       209 ~~~~~~L~~L~L~~n-~l~~~~~~---~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~L~~n~~~~  276 (694)
                      +...+.|++|+|++| .+.+....   ..+...++|++|+|++|.+....    ...+...++|++|+|++|.+.+
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            444566666666666 55543321   12233445555555555544311    1122233444455555444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.30  E-value=3.1e-07  Score=84.24  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=44.2

Q ss_pred             ccCCCCccEEEccCc-CCCcCC----cccccCCCCccEEeCCCCCCccc----chhhcCCCCCCcEEECcCCCCcccC--
Q psy3329         234 LKPLTKLHRLSLRNC-GLSRLP----ANTFHRFTCLQELDISHNPLIDA----FTALLSPLESLEHLDMGYSNLQRIS--  302 (694)
Q Consensus       234 l~~l~~L~~L~l~~n-~i~~~~----~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~--  302 (694)
                      +...++|++|++++| .+....    ...+...++|++|+|++|.+.+.    +...+...++|++|+|++|.|+...  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            455566666666666 665321    12334455566666666665442    2233334455555555555555321  


Q ss_pred             --hhhhcCCCCCcEEec--cCCccc
Q psy3329         303 --RSTFLKMTSLKTLIL--SGNKLE  323 (694)
Q Consensus       303 --~~~~~~l~~L~~L~L--~~n~l~  323 (694)
                        ...+...++|++|+|  ++|.++
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCC
Confidence              123334445555555  444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=9.6e-07  Score=85.01  Aligned_cols=81  Identities=23%  Similarity=0.309  Sum_probs=40.1

Q ss_pred             CCCCccEEEccCCcCCccCC--CCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccCh-------
Q psy3329         441 QLSRLRSLDLSRCKIDYLPP--NVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP-------  511 (694)
Q Consensus       441 ~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~-------  511 (694)
                      ++++|+.|+|++|+|+++.+  ..+..+++|+.|+|++|+|++.  ..+..+..+ +|++|+|++|.+.+..|       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            34555555555555555332  2334555566666666665554  122222223 56666666666655332       


Q ss_pred             hhhcCCCcccEEE
Q psy3329         512 TVLRHNRAITSIK  524 (694)
Q Consensus       512 ~~~~~~~~l~~l~  524 (694)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2344555565553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=6.3e-07  Score=86.31  Aligned_cols=83  Identities=25%  Similarity=0.288  Sum_probs=50.6

Q ss_pred             cCCCCCCeEECCCCCCCccC--CCCCCCCCCCCEEeCCCCcCCccChhhhcCCC--CCCEEECCCCcCCccc-----hhh
Q psy3329          61 TNLTTLNKLDLSGNPLRIIE--PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLN--HLKTLELSQNKLKSHI-----DWT  131 (694)
Q Consensus        61 ~~l~~L~~L~Ls~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~-----~~~  131 (694)
                      .++++|+.|+|++|.++++.  +..+..+++|+.|+|++|.|+++  ..+..+.  +|+.|+|++|.+....     -..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            45667777777777776643  23345677777777777777765  2233333  7777777777776310     012


Q ss_pred             hhhcCCCCCCEEEc
Q psy3329         132 LVLGNLGKLDTLDL  145 (694)
Q Consensus       132 ~~~~~l~~L~~L~L  145 (694)
                      ..+..+++|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            34666778877753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=9.4e-06  Score=72.21  Aligned_cols=34  Identities=12%  Similarity=0.107  Sum_probs=13.6

Q ss_pred             CCcEEeccCC-cccCcCchhhcCCCCCCEEeCCCC
Q psy3329         311 SLKTLILSGN-KLETLESGLFQNLTHLSVLELNNC  344 (694)
Q Consensus       311 ~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n  344 (694)
                      +|++|+|++| +++...-..+..+++|+.|++++|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            3444444443 233322223334444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=1.4e-05  Score=71.07  Aligned_cols=82  Identities=15%  Similarity=0.222  Sum_probs=41.9

Q ss_pred             CccEEEccCcCCCcCCcccccCCCCccEEeCCCCC-CcccchhhcCCC----CCCcEEECcCC-CCcccChhhhcCCCCC
Q psy3329         239 KLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNP-LIDAFTALLSPL----ESLEHLDMGYS-NLQRISRSTFLKMTSL  312 (694)
Q Consensus       239 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~L~~n-~l~~~~~~~~~~l~~L  312 (694)
                      .|+.|++++|.++......+..+++|++|+|++|. +++.-...+..+    ++|++|+|++| .++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45666666665554443444555566666666553 444333333332    34556666555 3554333344555556


Q ss_pred             cEEeccCC
Q psy3329         313 KTLILSGN  320 (694)
Q Consensus       313 ~~L~L~~n  320 (694)
                      ++|+|++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            66666555

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.26  E-value=0.00045  Score=62.65  Aligned_cols=87  Identities=11%  Similarity=0.049  Sum_probs=39.8

Q ss_pred             CCCCCEEeCCCCcCCccC----hhhhcCCCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCCCCCC------
Q psy3329          87 LTSLEYLMLNRCNLTYIS----PSAFDNLNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGISNLP------  154 (694)
Q Consensus        87 l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~------  154 (694)
                      -+.|+.|+|++|.|.+..    .+++..-+.|+.|+|++|.|...+  .+...+..-+.|++|+|+++....+.      
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            344555555555544321    233334455555555555555432  22234444455666666543221111      


Q ss_pred             -ccccCCCCCCcEEeCCCCC
Q psy3329         155 -DNVFANNTWLRNLNLAENE  173 (694)
Q Consensus       155 -~~~~~~~~~L~~L~l~~n~  173 (694)
                       ...+...+.|+.|+++.+.
T Consensus       149 ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCCcCeEeccCCC
Confidence             1234445556666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.24  E-value=0.00092  Score=60.59  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=39.0

Q ss_pred             cCCCCcEEEcCCC-CCCccch---hhhccCCCCccEEEccCcCCCcCCc----ccccCCCCccEEeCCCCCCccc----c
Q psy3329         211 NATKLRTLYLSGN-PLSAADL---SVALKPLTKLHRLSLRNCGLSRLPA----NTFHRFTCLQELDISHNPLIDA----F  278 (694)
Q Consensus       211 ~~~~L~~L~L~~n-~l~~~~~---~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~L~~n~~~~~----~  278 (694)
                      .-+.|+.|+|+++ .+.+...   ...+..-+.|+.|+|++|.|.+...    ..+...+.|+.|+|++|.|.+.    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3455666666553 5544321   1123344555555555555553221    2223344555555555555432    2


Q ss_pred             hhhcCCCCCCcEEECcC
Q psy3329         279 TALLSPLESLEHLDMGY  295 (694)
Q Consensus       279 ~~~~~~l~~L~~L~L~~  295 (694)
                      ..++...+.|++|+|++
T Consensus       119 a~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHTTTTCCCSEEECCC
T ss_pred             HHHHhhCCceeEEECCC
Confidence            23344444455555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.11  E-value=0.00082  Score=56.88  Aligned_cols=57  Identities=19%  Similarity=0.276  Sum_probs=43.2

Q ss_pred             ceEEcCCCCCc--ccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCC
Q psy3329         420 EELRLSGNPLH--VLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSM  481 (694)
Q Consensus       420 ~~L~Ls~n~l~--~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  481 (694)
                      ..++.+++.++  .++.. +    -++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-l----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-F----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-C----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCC-C----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36788888887  66543 2    2468888888888888888888888888888888887764

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=96.92  E-value=5.5e-05  Score=75.07  Aligned_cols=30  Identities=17%  Similarity=0.171  Sum_probs=24.0

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||||++.      +|+.||||+....
T Consensus        32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~   67 (308)
T 4gt4_A           32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK   67 (308)
T ss_dssp             EEEEECSSCEEEEEEEC-------CEEEEEEECCC-
T ss_pred             eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcc
Confidence            56999999999999973      4568999987644

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=96.80  E-value=0.00013  Score=72.37  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=27.6

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhHhHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLYRT  674 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~  674 (694)
                      +.||+|+||.||+|++ .|+.||||+......+.
T Consensus         9 ~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~   41 (303)
T 3hmm_A            9 ESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERS   41 (303)
T ss_dssp             EEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHH
T ss_pred             EEEeeCCCeEEEEEEE-CCEEEEEEEECccchhh
Confidence            5799999999999998 68899999986654443

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=95.90  E-value=0.00054  Score=68.85  Aligned_cols=50  Identities=14%  Similarity=0.124  Sum_probs=37.0

Q ss_pred             cCCCccccccccCcc----cceeecccceeeehhhhhhhhHHHHHHHhhHhHhh
Q psy3329         626 RAAPSYINMEKLNSK----SFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTK  675 (694)
Q Consensus       626 ~~~~s~~~l~~~~~~----~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~~  675 (694)
                      ...+++.++..+.++    +.||+|+||.||+|+..+|+.||||+.........
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~   70 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGG   70 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----C
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchH
Confidence            445677777776554    79999999999999999999999998776554433

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=95.86  E-value=0.00059  Score=67.35  Aligned_cols=40  Identities=10%  Similarity=0.058  Sum_probs=27.3

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhHhHhhhhhhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHLYRTKQQRIR  680 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~~~~~~~~~~  680 (694)
                      +.||+|+||.||+|+ ..+|..||||+.........++++.
T Consensus        11 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~   51 (299)
T 4g31_A           11 QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVM   51 (299)
T ss_dssp             EEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHH
Confidence            579999999999997 4578899999875444333334433

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=95.83  E-value=0.00065  Score=67.98  Aligned_cols=31  Identities=19%  Similarity=0.086  Sum_probs=25.2

Q ss_pred             ccceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVII------LSAMVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~  670 (694)
                      .+.||+|+||.||+|++.      +|+.||||+....
T Consensus        46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~   82 (329)
T 4aoj_A           46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA   82 (329)
T ss_dssp             EEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC
T ss_pred             EEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC
Confidence            367999999999999874      5779999987643

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=95.72  E-value=0.00072  Score=66.67  Aligned_cols=30  Identities=17%  Similarity=0.097  Sum_probs=22.8

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|++.      +|+.||||+....
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~   54 (299)
T 4asz_A           19 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA   54 (299)
T ss_dssp             EEEEC--CCCEEEEEECSCC----CEEEEEEEECSC
T ss_pred             eEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC
Confidence            57999999999999874      4779999987654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=95.24  E-value=0.0014  Score=66.13  Aligned_cols=36  Identities=14%  Similarity=0.095  Sum_probs=26.8

Q ss_pred             cceeecccceeeehhhhh------hhhHHHHHHHhhHhHhhh
Q psy3329         641 SFLTLGNFGLISVGVIIL------SAMVYFSFYARHLYRTKQ  676 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~------g~~vaV~~~~~~~~~~~~  676 (694)
                      +.||+|+||.||+|+...      +++||||+......+..+
T Consensus        70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~  111 (353)
T 4ase_A           70 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEH  111 (353)
T ss_dssp             EEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHH
T ss_pred             eEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHH
Confidence            679999999999997543      358999987655444333

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=94.99  E-value=0.002  Score=64.43  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=32.7

Q ss_pred             CCccccccccCcc----cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         628 APSYINMEKLNSK----SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       628 ~~s~~~l~~~~~~----~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ++++.++..+.++    ..||+|+||.||+|+..+|..||||+....
T Consensus        28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~   74 (321)
T 2qkw_B           28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE   74 (321)
T ss_dssp             --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC
T ss_pred             eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc
Confidence            3445556555444    789999999999999988999999976544

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=94.89  E-value=0.0019  Score=63.66  Aligned_cols=26  Identities=19%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~  668 (694)
                      +.||+|+||+||+|++.+  .||||+..
T Consensus        42 ~~iG~G~fG~Vy~~~~~~--~vAvK~~~   67 (307)
T 3omv_A           42 TRIGSGSFGTVYKGKWHG--DVAVKILK   67 (307)
T ss_dssp             EECCCCSSSEEEEEESSS--EEEEEECC
T ss_pred             eEEeeCCCcEEEEEEECC--cEEEEEEE
Confidence            579999999999999865  37888764

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=94.77  E-value=0.0028  Score=62.47  Aligned_cols=31  Identities=13%  Similarity=0.192  Sum_probs=26.4

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+ ..+|..||||+.....
T Consensus        38 ~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~   69 (311)
T 4aw0_A           38 KILGEGSFSTVVLARELATSREYAIKILEKRH   69 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEEHHH
Confidence            689999999999997 4678899999876554

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=94.66  E-value=0.0022  Score=64.30  Aligned_cols=30  Identities=10%  Similarity=-0.087  Sum_probs=19.6

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+ ..+|..||||+....
T Consensus        30 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~   60 (350)
T 4b9d_A           30 QKIGEGSFGKAILVKSTEDGRQYVIKEINIS   60 (350)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEECT
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEehH
Confidence            679999999999997 467889999987543

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=94.53  E-value=0.0037  Score=61.12  Aligned_cols=30  Identities=13%  Similarity=0.100  Sum_probs=24.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. .|..||||+....
T Consensus        32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~   62 (290)
T 3fpq_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDR   62 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGG
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchh
Confidence            36999999999999854 4668999876543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=94.46  E-value=0.0029  Score=61.24  Aligned_cols=30  Identities=17%  Similarity=0.272  Sum_probs=22.4

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+ ..+|..||||+....
T Consensus        19 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~   49 (275)
T 3hyh_A           19 KTLGEGSFGKVKLAYHTTTGQKVALKIINKK   49 (275)
T ss_dssp             EEEEC---CCEEEEECTTTCCEEEEEEEECC
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEeHH
Confidence            579999999999997 457889999987543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=94.16  E-value=0.0033  Score=65.38  Aligned_cols=30  Identities=3%  Similarity=-0.274  Sum_probs=26.7

Q ss_pred             cccceeecccceeeehh-hhhhhhHHHHHHH
Q psy3329         639 SKSFLTLGNFGLISVGV-IILSAMVYFSFYA  668 (694)
Q Consensus       639 ~~~~iG~G~fG~VYkg~-l~~g~~vaV~~~~  668 (694)
                      -.++||+|+||.||+|+ ..+|..||||+..
T Consensus        82 ~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~  112 (413)
T 3dzo_A           82 RGTVLGQEDPYAYLEATDQETGESFEVHVPY  112 (413)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEEEEC
T ss_pred             EecccccCCCEEEEEEEecCCCCceEEEEEe
Confidence            34789999999999999 7789999999876

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=93.95  E-value=0.0044  Score=61.83  Aligned_cols=31  Identities=10%  Similarity=-0.075  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+- ..|..||||+.....
T Consensus        64 ~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~   95 (336)
T 4g3f_A           64 PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV   95 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTT
T ss_pred             cEeccCCCeEEEEEEECCCCCEEEEEEECHHH
Confidence            5799999999999984 568899999876543

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=93.78  E-value=0.0061  Score=61.05  Aligned_cols=30  Identities=10%  Similarity=0.150  Sum_probs=25.1

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+- .+|..||||+....
T Consensus        80 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~  110 (346)
T 4fih_A           80 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLR  110 (346)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEGG
T ss_pred             EEeecCcCeEEEEEEECCCCCEEEEEEEecC
Confidence            4699999999999985 46889999987543

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=93.73  E-value=0.0077  Score=59.40  Aligned_cols=31  Identities=13%  Similarity=0.156  Sum_probs=26.5

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+. +|..||||+......
T Consensus        14 ~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~   44 (301)
T 3q4u_A           14 ECVGKGRYGEVWRGSW-QGENVAVKIFSSRDE   44 (301)
T ss_dssp             EEEEECSSEEEEEEEE-TTEEEEEEEECGGGH
T ss_pred             EeeccCCCcEEEEEEE-CCEEEEEEEeccccc
Confidence            6899999999999998 788999998765433

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=93.58  E-value=0.0089  Score=59.72  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=28.0

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhHhHhhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQ  676 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~~~  676 (694)
                      ..||+|+||.||+|+.. |..||||+......+..+
T Consensus        30 ~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~   64 (322)
T 3soc_A           30 EVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQ   64 (322)
T ss_dssp             EEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHH
T ss_pred             heecccCceEEEEEEEC-CCEEEEEEeecCchHHHH
Confidence            68999999999999985 789999998655444333

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=93.56  E-value=0.0049  Score=61.84  Aligned_cols=29  Identities=10%  Similarity=-0.003  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+.. +|..||||+...
T Consensus        12 ~~lG~G~~g~V~~a~~~~~~~~vavK~~~~   41 (332)
T 3qd2_B           12 QCMGRGGFGVVFEAKNKVDDCNYAIKRIRL   41 (332)
T ss_dssp             EEEECC-CSEEEEEEETTTCCEEEEEEEEC
T ss_pred             eEecCCCCeEEEEEEEcCCCcEEEEEEeec
Confidence            67999999999999986 788999998754

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=93.42  E-value=0.0044  Score=61.42  Aligned_cols=43  Identities=16%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             cCCCccccccccCcc----------cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         626 RAAPSYINMEKLNSK----------SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       626 ~~~~s~~~l~~~~~~----------~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      ...+++.++.+++++          +.||+|+||.||+|+. +|+.||||+...
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~   64 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAA   64 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECC
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEec
Confidence            345667777776433          6899999999999997 678899997654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=93.37  E-value=0.0073  Score=61.81  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=25.7

Q ss_pred             cccceeecccceeeehhhh----hhhhHHHHHHHhh
Q psy3329         639 SKSFLTLGNFGLISVGVII----LSAMVYFSFYARH  670 (694)
Q Consensus       639 ~~~~iG~G~fG~VYkg~l~----~g~~vaV~~~~~~  670 (694)
                      -.+.||+|+||.||+|+..    +|..||||+....
T Consensus        49 ~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~   84 (373)
T 2qol_A           49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVG   84 (373)
T ss_dssp             CCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTT
T ss_pred             eeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCc
Confidence            3478999999999999986    5678999987654

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=93.21  E-value=0.0057  Score=60.83  Aligned_cols=28  Identities=14%  Similarity=-0.051  Sum_probs=24.8

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~  668 (694)
                      ..||+|+||+||+|+.. +|..||||+..
T Consensus        63 ~~LG~G~~g~Vy~~~~~~~~~~vavK~~~   91 (311)
T 3p1a_A           63 SRLGHGSYGEVFKVRSKEDGRLYAVKRSM   91 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTSCEEEEEEES
T ss_pred             heeccCCCeEEEEEEECCCCeEEEEEEec
Confidence            68999999999999887 78899999754

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=93.10  E-value=0.012  Score=59.13  Aligned_cols=35  Identities=11%  Similarity=0.153  Sum_probs=28.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhHhHhhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLYRTKQ  676 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~~~~  676 (694)
                      ..||+|+||.||+|+. +|..||||+......+..+
T Consensus        19 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~   53 (336)
T 3g2f_A           19 ELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFI   53 (336)
T ss_dssp             EEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHHHH
T ss_pred             eecccCCCeEEEEEEE-CCeEEEEEEeeccchhhHH
Confidence            6899999999999987 7889999998655444333

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=93.09  E-value=0.007  Score=60.59  Aligned_cols=35  Identities=11%  Similarity=0.107  Sum_probs=27.0

Q ss_pred             cceeecccceeeehhhh----hhhhHHHHHHHhhHhHhh
Q psy3329         641 SFLTLGNFGLISVGVII----LSAMVYFSFYARHLYRTK  675 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~----~g~~vaV~~~~~~~~~~~  675 (694)
                      +.||+|+||.||+|+..    .+..||||+.........
T Consensus        55 ~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~   93 (325)
T 3kul_A           55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ   93 (325)
T ss_dssp             EEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHH
T ss_pred             eEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHH
Confidence            78999999999999984    444699998865433333

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=93.05  E-value=0.0079  Score=61.65  Aligned_cols=30  Identities=20%  Similarity=0.230  Sum_probs=26.2

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. +|+.||||+....
T Consensus       120 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~  150 (377)
T 3cbl_A          120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRET  150 (377)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEECCTT
T ss_pred             eEeccCCCCeEEEEEEecCCeEEEEEEcccc
Confidence            68999999999999986 7889999987644

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=93.05  E-value=0.0082  Score=61.02  Aligned_cols=38  Identities=13%  Similarity=0.111  Sum_probs=28.6

Q ss_pred             cceeecccceeeehh------hhhhhhHHHHHHHhhHhHhhhhh
Q psy3329         641 SFLTLGNFGLISVGV------IILSAMVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~------l~~g~~vaV~~~~~~~~~~~~~~  678 (694)
                      ..||+|+||.||+|+      ..+|..||||+..........++
T Consensus        28 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~   71 (359)
T 3vhe_A           28 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRA   71 (359)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHH
T ss_pred             eeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHH
Confidence            689999999999995      55667999999865444433333

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=92.96  E-value=0.0088  Score=61.47  Aligned_cols=29  Identities=14%  Similarity=0.192  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- ..|..||||+...
T Consensus        60 ~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~   89 (398)
T 4b99_A           60 ETIGNGAYGVVSSARRRLTGQQVAIKKIPN   89 (398)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEETT
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEECc
Confidence            6899999999999974 5788999998653

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=92.84  E-value=0.01  Score=60.43  Aligned_cols=35  Identities=9%  Similarity=-0.093  Sum_probs=26.2

Q ss_pred             cceeecccceeeeh------hhhhhhhHHHHHHHhhHhHhh
Q psy3329         641 SFLTLGNFGLISVG------VIILSAMVYFSFYARHLYRTK  675 (694)
Q Consensus       641 ~~iG~G~fG~VYkg------~l~~g~~vaV~~~~~~~~~~~  675 (694)
                      ..||+|+||.||+|      ....|..||||+......+..
T Consensus        71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~  111 (365)
T 3e7e_A           71 HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEF  111 (365)
T ss_dssp             EEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHH
T ss_pred             EEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHH
Confidence            68999999999999      466778999999876544433

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=92.75  E-value=0.011  Score=59.06  Aligned_cols=32  Identities=9%  Similarity=0.094  Sum_probs=26.8

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+... |..||||+......
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~   47 (319)
T 4euu_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISF   47 (319)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGG
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEeccccc
Confidence            689999999999998765 77999998765443

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=92.75  E-value=0.013  Score=58.51  Aligned_cols=40  Identities=13%  Similarity=0.120  Sum_probs=30.4

Q ss_pred             cccceeecccceeeehhhh-hhhhHHHHHHHhhHhHhhhhh
Q psy3329         639 SKSFLTLGNFGLISVGVII-LSAMVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       639 ~~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~~~~~~  678 (694)
                      ....||+|+||.||+|+.. +|..||||+.........+++
T Consensus        15 ~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e   55 (325)
T 3kn6_A           15 KDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKE   55 (325)
T ss_dssp             TSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHH
T ss_pred             CCCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHH
Confidence            3478999999999999875 577999999876544444333

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=92.38  E-value=0.011  Score=60.89  Aligned_cols=30  Identities=10%  Similarity=0.150  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+- .+|..||||+....
T Consensus       157 ~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~  187 (423)
T 4fie_A          157 IKIGEGSTGIVCIATVRSSGKLVAVKKMDLR  187 (423)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEST
T ss_pred             eEeccCcCcEEEEEEECCCCCEEEEEEEecc
Confidence            5799999999999985 46889999987543

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=92.35  E-value=0.013  Score=60.47  Aligned_cols=32  Identities=9%  Similarity=0.094  Sum_probs=26.9

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+... |..||||+......
T Consensus        15 ~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~   47 (396)
T 4eut_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISF   47 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGG
T ss_pred             EEEEcCCCeEEEEEEECCCCcEEEEEEeccccc
Confidence            689999999999998765 78999999765443

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=92.19  E-value=0.0094  Score=60.38  Aligned_cols=28  Identities=11%  Similarity=-0.083  Sum_probs=26.0

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~  668 (694)
                      ..||.|+||.||+|.-++|..||||+..
T Consensus       101 ~~IG~Gk~a~VY~a~d~~G~~vAvKi~r  128 (397)
T 4gyi_A          101 SRIGVGKESDIMIVADEKGKQKVLKIHR  128 (397)
T ss_dssp             EEEEECSSEEEEEEECTTCCEEEEEEEC
T ss_pred             CEeeeCCceEEEEEECCCCCEEEEEEEe
Confidence            6899999999999999999999999864

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=92.10  E-value=0.01  Score=59.35  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        13 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~   44 (323)
T 3tki_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR   44 (323)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC-
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEccc
Confidence            68999999999999865 77899999875443

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=91.99  E-value=0.02  Score=58.12  Aligned_cols=44  Identities=14%  Similarity=-0.021  Sum_probs=32.5

Q ss_pred             cCCCccccccccCcc----cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         626 RAAPSYINMEKLNSK----SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       626 ~~~~s~~~l~~~~~~----~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ...+++.+...+.+.    +.||+|+||.||+|+. .+|..||||+...
T Consensus        22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   70 (360)
T 3llt_A           22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN   70 (360)
T ss_dssp             GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred             ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc
Confidence            334455555555444    7899999999999987 4677999998753

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=91.95  E-value=0.012  Score=58.80  Aligned_cols=30  Identities=10%  Similarity=0.065  Sum_probs=26.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. +|..||||+....
T Consensus        51 ~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~   81 (321)
T 2c30_A           51 VKIGEGSTGIVCLAREKHSGRQVAVKMMDLR   81 (321)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETT
T ss_pred             EEeccCCCeEEEEEEECCCCcEEEEEEEecc
Confidence            58999999999999976 7899999987543

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=91.95  E-value=0.013  Score=59.16  Aligned_cols=38  Identities=16%  Similarity=0.056  Sum_probs=28.5

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHhhHhHhhhhh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~~~~~~~~~  678 (694)
                      +.||+|+||.||+|+..      +|..||||+.........+++
T Consensus        53 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~   96 (343)
T 1luf_A           53 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQAD   96 (343)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHH
T ss_pred             eeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHH
Confidence            68999999999999985      347899999865544333333

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=91.76  E-value=0.019  Score=55.97  Aligned_cols=29  Identities=7%  Similarity=-0.120  Sum_probs=26.3

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||.|+||.||+|+..+|..||||+...
T Consensus        96 ~~iG~G~~g~Vy~~~~~~g~~valK~~~~  124 (282)
T 1zar_A           96 KLMGEGKESAVFNCYSEKFGECVVKFHKV  124 (282)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC
T ss_pred             CEeccCCCceEEEEEeCCCCEEEEEEEEC
Confidence            78999999999999998899999998753

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=91.70  E-value=0.013  Score=58.32  Aligned_cols=31  Identities=23%  Similarity=0.152  Sum_probs=24.8

Q ss_pred             cceeecccceeeehhhh-----hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-----LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-----~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|.+.     +|..||||+.....
T Consensus        37 ~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~   72 (318)
T 3lxp_A           37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA   72 (318)
T ss_dssp             EEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC
T ss_pred             heecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc
Confidence            57999999999887643     67789999987543

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=91.66  E-value=0.0083  Score=58.99  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhhh----hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII----LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~----~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-.    .|..||||+.....
T Consensus        30 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~   64 (304)
T 3ubd_A           30 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKAT   64 (304)
T ss_dssp             EEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEE
T ss_pred             EEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHH
Confidence            68999999999999642    35689999876543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=91.66  E-value=0.017  Score=56.59  Aligned_cols=34  Identities=9%  Similarity=0.017  Sum_probs=26.0

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHhHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLYRT  674 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~~~  674 (694)
                      ..||+|+||.||+|+- .+|..||||+........
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~   47 (290)
T 3fme_A           13 MELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQ   47 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEC---CHH
T ss_pred             HhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcH
Confidence            6899999999999985 578899999876554333

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=91.64  E-value=0.014  Score=59.66  Aligned_cols=31  Identities=16%  Similarity=0.130  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhh--------hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI--------ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l--------~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+.        .+|..||||+.....
T Consensus        87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~  125 (370)
T 2psq_A           87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA  125 (370)
T ss_dssp             EEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC
T ss_pred             eEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc
Confidence            6899999999999975        345679999886543

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=91.57  E-value=0.014  Score=57.80  Aligned_cols=31  Identities=16%  Similarity=0.135  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhh------hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI------ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l------~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+.      .+|..||||+.....
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~   65 (313)
T 1t46_A           29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA   65 (313)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC
T ss_pred             HhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch
Confidence            6899999999999974      456799999876543

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=91.54  E-value=0.018  Score=57.86  Aligned_cols=30  Identities=17%  Similarity=0.164  Sum_probs=23.5

Q ss_pred             cceeecccceeeehhh--------hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI--------ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l--------~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.        .+|..||||+....
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~   78 (334)
T 2pvf_A           41 KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD   78 (334)
T ss_dssp             EEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTT
T ss_pred             eEEeecCceeEEEeEeccccccccccceEEEEeeeccC
Confidence            6899999999999986        35678999987654

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=91.53  E-value=0.013  Score=58.47  Aligned_cols=34  Identities=12%  Similarity=0.021  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHhHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLYRT  674 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~~  674 (694)
                      ..||+|+||.||+|+.. +|..||||+........
T Consensus         8 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~   42 (324)
T 3mtl_A            8 DKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEG   42 (324)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECC-----
T ss_pred             EEEcCCCCEEEEEEEECCCCcEEEEEEEecccccc
Confidence            57999999999999875 67799999876544433

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=91.50  E-value=0.014  Score=57.45  Aligned_cols=31  Identities=16%  Similarity=0.034  Sum_probs=24.6

Q ss_pred             cceeecccceeeehh-----hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV-----IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-----l~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+     ..+|..||||+.....
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~   62 (302)
T 4e5w_A           27 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES   62 (302)
T ss_dssp             EEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC---
T ss_pred             hccCCCCceEEEEEEEccccCccCeEEEEEEecccc
Confidence            689999999999998     4577899999876554

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=91.46  E-value=0.018  Score=58.84  Aligned_cols=32  Identities=6%  Similarity=-0.074  Sum_probs=27.0

Q ss_pred             ccceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         640 KSFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      ...||+|+||.||+|+. .+|..||||+.....
T Consensus        67 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~   99 (371)
T 3q60_A           67 VEPLRVGDRSVVFLVRDVERLEDFALKVFTMGA   99 (371)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEEECCS
T ss_pred             eeeccCCCCEEEEEEEECCCCceeEEEEEEecc
Confidence            37899999999999994 578899999877643

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=91.43  E-value=0.013  Score=57.39  Aligned_cols=30  Identities=27%  Similarity=0.249  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhhh---hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII---LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..   .|..||||+....
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~   48 (287)
T 1u59_A           16 IELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG   48 (287)
T ss_dssp             EEEECCTTEEEEEEEEC---CCEEEEEEEECSS
T ss_pred             ccccccCceeEEEeEeccCCCcceEEEEecCCc
Confidence            47999999999999864   5668999988654

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=91.42  E-value=0.016  Score=57.43  Aligned_cols=30  Identities=10%  Similarity=0.067  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-.+|..||||+....
T Consensus        27 ~~lG~G~~g~V~~~~~~~~~~vavK~~~~~   56 (311)
T 3niz_A           27 EKVGEGTYGVVYKAKDSQGRIVALKRIRLD   56 (311)
T ss_dssp             EEEEECSSCEEEEEEETTSCEEEEEEEC--
T ss_pred             hhccCCCCeEEEEEEECCCCEEEEEEEecc
Confidence            689999999999999989999999987543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=91.15  E-value=0.018  Score=57.08  Aligned_cols=31  Identities=16%  Similarity=0.098  Sum_probs=25.5

Q ss_pred             cceeecccceeeehh------hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV------IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~------l~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|+      -.+|..||||+.....
T Consensus        33 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~   69 (316)
T 2xir_A           33 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA   69 (316)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC
T ss_pred             eEEcCCCceeEEEEEEecCCccccceEEEEEecccCC
Confidence            689999999999996      3567799999876543

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=91.12  E-value=0.017  Score=59.20  Aligned_cols=31  Identities=16%  Similarity=0.123  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhh--------hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI--------ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l--------~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+.        ..+..||||+.....
T Consensus        75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~  113 (382)
T 3tt0_A           75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA  113 (382)
T ss_dssp             EEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC
T ss_pred             eEEecCCCeEEEEEEEccccccccccceEEEEEeecccc
Confidence            6899999999999985        344579999876543

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=91.04  E-value=0.016  Score=59.08  Aligned_cols=29  Identities=21%  Similarity=0.167  Sum_probs=23.8

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|++.      +|..||||+...
T Consensus        77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~  111 (367)
T 3l9p_A           77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPE  111 (367)
T ss_dssp             EECCCCSSSCEEEEEECC-----CCEEEEEEECCS
T ss_pred             eEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccc
Confidence            67999999999999953      345899998754

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=91.02  E-value=0.027  Score=56.45  Aligned_cols=29  Identities=14%  Similarity=0.206  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. |..||||+....
T Consensus        43 ~~lg~G~~g~V~~~~~~-~~~vavK~~~~~   71 (337)
T 3mdy_A           43 KQIGKGRYGEVWMGKWR-GEKVAVKVFFTT   71 (337)
T ss_dssp             EEEEEETTEEEEEEEET-TEEEEEEEEEGG
T ss_pred             eEeecCCCeEEEEEEEC-CceEEEEEEecc
Confidence            78999999999999985 889999987543

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=90.99  E-value=0.026  Score=58.83  Aligned_cols=31  Identities=13%  Similarity=0.198  Sum_probs=26.5

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~  671 (694)
                      ++||+|+||.||+|+..+ |..||||+.....
T Consensus        80 ~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~  111 (437)
T 4aw2_A           80 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWE  111 (437)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHH
T ss_pred             EEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHH
Confidence            789999999999999876 5699999876543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=90.98  E-value=0.018  Score=57.59  Aligned_cols=30  Identities=10%  Similarity=0.058  Sum_probs=25.8

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. +|..||||+....
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~   58 (327)
T 3aln_A           28 GEIGRGAYGSVNKMVHKPSGQIMAVKRIRST   58 (327)
T ss_dssp             CEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred             heeccCCCEEEEEEEEcCCCCEEEEEEeecc
Confidence            68999999999999984 6889999987554

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=90.96  E-value=0.022  Score=56.94  Aligned_cols=30  Identities=20%  Similarity=0.140  Sum_probs=21.4

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..      +|..||||+....
T Consensus        36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~   71 (327)
T 2yfx_A           36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV   71 (327)
T ss_dssp             EECC--CSSCEEEEEC--------CCEEEEEECCSS
T ss_pred             EEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc
Confidence            78999999999999853      4558999987533

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=90.92  E-value=0.022  Score=56.07  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=23.3

Q ss_pred             cceeecccceeeehhhhhhh----hHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVIILSA----MVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~----~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+..+..    .||||+......
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~   66 (298)
T 3f66_A           31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD   66 (298)
T ss_dssp             EEEEEETTEEEEEEEEC-----CEEEEEEEETTCCS
T ss_pred             ceeeecCCceEEEEEEecCCCceeEEEEEecccCCC
Confidence            68999999999999975443    578887665433

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=90.80  E-value=0.029  Score=55.80  Aligned_cols=30  Identities=23%  Similarity=0.253  Sum_probs=25.1

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+..      .|..||||+....
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~   66 (322)
T 1p4o_A           31 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA   66 (322)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT
T ss_pred             eEeccCCceEEEeeeecCccCCCCceEEEEEecccc
Confidence            78999999999999875      3678999987544

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=90.70  E-value=0.013  Score=58.09  Aligned_cols=29  Identities=3%  Similarity=-0.101  Sum_probs=26.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+..+|..||||+...
T Consensus        34 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~   62 (313)
T 3cek_A           34 KQIGSGGSSKVFQVLNEKKQIYAIKYVNL   62 (313)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEEC
T ss_pred             EEecCCCCEEEEEEEcCCCcEEEEEEecc
Confidence            78999999999999999999999998743

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=90.65  E-value=0.023  Score=55.03  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=25.7

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~   44 (276)
T 2yex_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR   44 (276)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGG
T ss_pred             EEeecCCCcEEEEEEECCCCcEEEEEEeeecc
Confidence            57999999999999875 67899999875443

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=90.65  E-value=0.018  Score=58.15  Aligned_cols=29  Identities=3%  Similarity=-0.101  Sum_probs=26.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+..+|..||||+...
T Consensus        15 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~   43 (343)
T 3dbq_A           15 KQIGSGGSSKVFQVLNEKKQIYAIKYVNL   43 (343)
T ss_dssp             EEESCCSSEEEEEEECTTSCEEEEEEEEC
T ss_pred             EEEecCCCeEEEEEEeCCCCEEEEEEeec
Confidence            68999999999999999999999998653

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=90.64  E-value=0.031  Score=56.13  Aligned_cols=31  Identities=16%  Similarity=0.167  Sum_probs=26.4

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+. .|..||||+......
T Consensus        48 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~   78 (342)
T 1b6c_B           48 ESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE   78 (342)
T ss_dssp             EEEEEETTEEEEEEEE-TTEEEEEEEECGGGH
T ss_pred             eeecCCCCcEEEEEEE-cCccEEEEEeCchhH
Confidence            6899999999999998 588999999765443

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=90.58  E-value=0.025  Score=56.54  Aligned_cols=31  Identities=13%  Similarity=0.081  Sum_probs=26.0

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|+ ..+|..||||+.....
T Consensus        42 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~   73 (330)
T 3nsz_A           42 RKLGRGKYSEVFEAINITNNEKVVVKILKPVK   73 (330)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSCC
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEecccc
Confidence            789999999999996 4678899999876433

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=90.57  E-value=0.027  Score=56.59  Aligned_cols=30  Identities=13%  Similarity=0.028  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ++||+|+||.||+|+-. +|..||||+....
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~   65 (336)
T 3fhr_A           35 QVLGLGVNGKVLECFHRRTGQKCALKLLYDS   65 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESS
T ss_pred             eeeeeCCCeEEEEEEECCCCCEEEEEEecCc
Confidence            57999999999999876 6789999987543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=90.52  E-value=0.021  Score=56.27  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+- .+|..||||+.....
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~   59 (303)
T 3a7i_A           28 EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE   59 (303)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEETTT
T ss_pred             hhhcccCCeEEEEEEECCCCcEEEEEEecccc
Confidence            6799999999999974 467899999875443

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=90.50  E-value=0.016  Score=57.86  Aligned_cols=31  Identities=19%  Similarity=0.305  Sum_probs=26.2

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+ ..+|..||||+.....
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~   80 (320)
T 3a99_A           49 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR   80 (320)
T ss_dssp             EECSSSSSCEEEEEEETTTTEEEEEEEEEGGG
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEeccc
Confidence            689999999999997 4678899999876554

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=90.48  E-value=0.021  Score=56.04  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=25.3

Q ss_pred             ccceeecccceeeehhhhhhh----hHHHHHHHhhHh
Q psy3329         640 KSFLTLGNFGLISVGVIILSA----MVYFSFYARHLY  672 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g~----~vaV~~~~~~~~  672 (694)
                      .+.||+|+||.||+|+..+..    .||||+......
T Consensus        26 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~   62 (298)
T 3pls_A           26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITE   62 (298)
T ss_dssp             EEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCS
T ss_pred             CceeccCCCceEEEEEEecCCCceeeeeeeecccccc
Confidence            378999999999999864433    689998765443

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=90.44  E-value=0.02  Score=58.94  Aligned_cols=29  Identities=3%  Similarity=-0.101  Sum_probs=26.1

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+..+|..||||+...
T Consensus        62 ~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~   90 (390)
T 2zmd_A           62 KQIGSGGSSKVFQVLNEKKQIYAIKYVNL   90 (390)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEEC
T ss_pred             EEEccCCCeEEEEEEcCCCCEEEEEEEec
Confidence            68999999999999998899999998754

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=90.40  E-value=0.032  Score=55.74  Aligned_cols=30  Identities=20%  Similarity=0.187  Sum_probs=19.1

Q ss_pred             cceeecccceeeehhh-hhhhhH----HHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMV----YFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~v----aV~~~~~~  670 (694)
                      +.||+|+||.||+|+. .+|..|    |||.....
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~   55 (327)
T 3poz_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA   55 (327)
T ss_dssp             EEEEEETTEEEEEEEECC----CCEEEEEEEC---
T ss_pred             eEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc
Confidence            7899999999999984 466654    67665433

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=90.39  E-value=0.023  Score=61.82  Aligned_cols=33  Identities=12%  Similarity=0.128  Sum_probs=27.2

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLYR  673 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~  673 (694)
                      .+||+|+||.||+|+-. .|..||||+.......
T Consensus       195 k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~  228 (689)
T 3v5w_A          195 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIK  228 (689)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEeHHHcc
Confidence            78999999999999864 5789999988655443

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=90.34  E-value=0.027  Score=57.28  Aligned_cols=30  Identities=13%  Similarity=0.241  Sum_probs=24.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+- .+|..||||+....
T Consensus        33 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~   63 (364)
T 3qyz_A           33 SYIGEGAYGMVCSAYDNLNKVRVAIKKISPF   63 (364)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCT
T ss_pred             EEeecCCCeEEEEEEECCCCeEEEEEEeccc
Confidence            6899999999999974 46778999987643

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=90.33  E-value=0.023  Score=57.03  Aligned_cols=29  Identities=17%  Similarity=0.094  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+- .|..||||+....
T Consensus        26 ~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~   54 (336)
T 2vuw_A           26 EKIGEGVFGEVFQTIA-DHTPVAIKIIAIE   54 (336)
T ss_dssp             EEEEEETTEEEEEEEE-TTEEEEEEEEEES
T ss_pred             eeecccCceEEEEEEe-CCceEEEEEEecC
Confidence            6899999999999987 7889999998654

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=90.26  E-value=0.024  Score=57.37  Aligned_cols=29  Identities=7%  Similarity=0.053  Sum_probs=23.2

Q ss_pred             cceeecccceeeehhh----hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI----ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l----~~g~~vaV~~~~~  669 (694)
                      ..||+|+||+||+|+-    ..+..||||+...
T Consensus        27 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~   59 (361)
T 4f9c_A           27 DKIGEGTFSSVYLATAQLQVGPEEKIALKHLIP   59 (361)
T ss_dssp             EEEEECSSEEEEEEEEEBTTSCEEEEEEEEECT
T ss_pred             EEEecccCcEEEEEEEcccCCCCCEEEEEEEcc
Confidence            6899999999999963    3456899997543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=90.23  E-value=0.021  Score=55.15  Aligned_cols=29  Identities=10%  Similarity=-0.011  Sum_probs=25.3

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. |..||||+....
T Consensus        16 ~~lg~G~~g~V~~~~~~-~~~~avK~~~~~   44 (271)
T 3kmu_A           16 TKLNENHSGELWKGRWQ-GNDIVVKVLKVR   44 (271)
T ss_dssp             EEEEEETTEEEEEEEET-TEEEEEEEECCT
T ss_pred             HHhcCCCcceEEEEEEC-CeeEEEEEeccc
Confidence            68999999999999984 888999987654

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=90.19  E-value=0.023  Score=56.30  Aligned_cols=31  Identities=16%  Similarity=0.142  Sum_probs=25.1

Q ss_pred             cceeecccceeeehhh------hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI------ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l------~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+.      .+|..||||+.....
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~   65 (314)
T 2ivs_A           29 KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA   65 (314)
T ss_dssp             EEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC
T ss_pred             eeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC
Confidence            6799999999999975      345789999876543

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=90.19  E-value=0.026  Score=54.97  Aligned_cols=30  Identities=17%  Similarity=0.257  Sum_probs=24.0

Q ss_pred             cceeecccceeeehhhhh----hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL----SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~----g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+...    +..||||+....
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~   54 (281)
T 1mp8_A           21 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC   54 (281)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTT
T ss_pred             eEeeecCCeeEEEEEEecCCCCceEEEEEecccc
Confidence            689999999999998753    346999886553

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=89.99  E-value=0.022  Score=57.31  Aligned_cols=31  Identities=19%  Similarity=0.196  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhh------hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI------ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l------~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+.      .+|..||||+.....
T Consensus        51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~   87 (344)
T 1rjb_A           51 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA   87 (344)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--
T ss_pred             eeecCCCCceeEEeeeeccccCCcceEEEEEeccccc
Confidence            7899999999999986      355689999876443

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=89.96  E-value=0.022  Score=58.20  Aligned_cols=30  Identities=17%  Similarity=0.260  Sum_probs=23.9

Q ss_pred             cceeecccceeeehhhhhh----hhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILS----AMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g----~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..+.    ..||||+....
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~  128 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI  128 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC
T ss_pred             cEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC
Confidence            6899999999999998543    26899887543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=89.85  E-value=0.026  Score=54.52  Aligned_cols=30  Identities=20%  Similarity=0.281  Sum_probs=26.7

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..++..||||+....
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~   45 (269)
T 4hcu_A           16 QEIGSGQFGLVHLGYWLNKDKVAIKTIREG   45 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEEECTT
T ss_pred             heecCCCccEEEEEEecCCCeEEEEEeccc
Confidence            689999999999999988889999987644

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=89.84  E-value=0.025  Score=54.52  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=27.0

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+..++..||||+.....
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~   44 (268)
T 3sxs_A           14 KELGSGQFGVVKLGKWKGQYDVAVKMIKEGS   44 (268)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECBTT
T ss_pred             eeeccCCCceEEEEEecCceeEEEEEeccCC
Confidence            6899999999999999988889999876543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=89.83  E-value=0.029  Score=54.63  Aligned_cols=31  Identities=23%  Similarity=0.188  Sum_probs=24.8

Q ss_pred             cceeecccceeeehhhhhhh----hHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIILSA----MVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~----~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+..++.    .||||+.....
T Consensus        18 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~   52 (281)
T 3cc6_A           18 RILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC   52 (281)
T ss_dssp             EEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS
T ss_pred             EEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc
Confidence            68999999999999875432    59999876543

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=89.81  E-value=0.031  Score=56.45  Aligned_cols=29  Identities=17%  Similarity=0.174  Sum_probs=25.1

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|+ ..+|..||||+...
T Consensus        60 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~   89 (348)
T 1u5q_A           60 REIGHGSFGAVYFARDVRNSEVVAIKKMSY   89 (348)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEES
T ss_pred             eEEccCCCEEEEEEEEccCCeEEEEEEEcc
Confidence            679999999999998 46888999998753

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=89.75  E-value=0.037  Score=57.79  Aligned_cols=33  Identities=12%  Similarity=0.047  Sum_probs=26.6

Q ss_pred             ccceeecccceeeehhhhhhhhHHHHHHHhhHh
Q psy3329         640 KSFLTLGNFGLISVGVIILSAMVYFSFYARHLY  672 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~  672 (694)
                      ..+||+|+||+||++...+|..||||+......
T Consensus        20 ~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~   52 (434)
T 2rio_A           20 EKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFC   52 (434)
T ss_dssp             EEEEEECSTTCEEEEEESSSSEEEEEEEEGGGH
T ss_pred             cCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHH
Confidence            378999999999777677899999998755433

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=89.73  E-value=0.033  Score=53.45  Aligned_cols=27  Identities=7%  Similarity=-0.000  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhh-hhhhh--HHHHHH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAM--VYFSFY  667 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~--vaV~~~  667 (694)
                      ..||.|+||.||+|+. .+|..  ||||+.
T Consensus        53 ~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~   82 (258)
T 1zth_A           53 GVISTGKEANVFYADGVFDGKPVAMAVKIY   82 (258)
T ss_dssp             EEEEECSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CEEeecceEEEEEEEEcCCCcEeeEEEEEE
Confidence            6899999999999998 78988  999974

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=89.69  E-value=0.027  Score=57.22  Aligned_cols=30  Identities=17%  Similarity=-0.027  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. +|..||||+....
T Consensus        39 ~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~   69 (360)
T 3eqc_A           39 SELGAGNGGVVFKVSHKPSGLVMARKLIHLE   69 (360)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEECC
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEeccc
Confidence            68999999999999876 5779999987644

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=89.68  E-value=0.023  Score=58.19  Aligned_cols=28  Identities=4%  Similarity=-0.301  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+. .+|..||||+..
T Consensus        79 ~~lG~G~~g~V~~a~~~~~~~~vavK~~~  107 (377)
T 3byv_A           79 TVLGQEDPYAYLEATDQETGESFEVHVPY  107 (377)
T ss_dssp             EEEEEETTEEEEEEEC-CCCCEEEEEEEE
T ss_pred             ceeecCCCEEEEEEEECCCCcEEEEEEEe
Confidence            7899999999999996 568899999975

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=89.60  E-value=0.032  Score=54.91  Aligned_cols=30  Identities=10%  Similarity=0.071  Sum_probs=25.1

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+ ..+|..||||+....
T Consensus        26 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~   56 (297)
T 3fxz_A           26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQ   56 (297)
T ss_dssp             EEEEEETTEEEEEEEBTTTCCEEEEEEEEGG
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEeecc
Confidence            579999999999997 467889999986543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=89.58  E-value=0.037  Score=56.66  Aligned_cols=29  Identities=17%  Similarity=0.184  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-. +|..||||+...
T Consensus        60 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~   89 (382)
T 2vx3_A           60 SLIGKGSFGQVVKAYDRVEQEWVAIKIIKN   89 (382)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred             EEEeecCCEEEEEEEEcCCCcEEEEEEEec
Confidence            68999999999999754 677999998754

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=89.56  E-value=0.022  Score=62.38  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             ceeecccceeeehhhh---hhhhHHHHHHHhh
Q psy3329         642 FLTLGNFGLISVGVII---LSAMVYFSFYARH  670 (694)
Q Consensus       642 ~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~  670 (694)
                      .||+|+||.||+|+..   +|..||||+....
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~  374 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG  374 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCC
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCC
Confidence            6999999999999875   5668999998654

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=89.56  E-value=0.024  Score=56.18  Aligned_cols=29  Identities=14%  Similarity=0.172  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+. .|+.||||+....
T Consensus        43 ~~lG~G~~g~V~~~~~-~~~~vavK~~~~~   71 (309)
T 3p86_A           43 EKIGAGSFGTVHRAEW-HGSDVAVKILMEQ   71 (309)
T ss_dssp             EEEEECSSEEEEEEEE-TTEEEEEEEECCC
T ss_pred             eEeecCCCeEEEEEEE-CCCcEEEEEecCC
Confidence            6899999999999987 6888999987544

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=89.54  E-value=0.029  Score=56.65  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+-. +|..||||+..
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~   45 (353)
T 2b9h_A           17 SLLGEGAYGVVCSATHKPTGEIVAIKKIE   45 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEC
T ss_pred             eEEcCCCCeEEEEEEECCCCcEEEEEeec
Confidence            68999999999999865 68899999874

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=89.51  E-value=0.028  Score=54.87  Aligned_cols=33  Identities=12%  Similarity=-0.018  Sum_probs=26.4

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLYR  673 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~  673 (694)
                      +.||+|+||.||+|+-. +|..||||+......+
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~   61 (285)
T 3is5_A           28 RKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ   61 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC
T ss_pred             ceeccCCCeEEEEEEEccCCceEEEEEeeccccc
Confidence            68999999999999864 5678999987665443

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=89.43  E-value=0.031  Score=55.03  Aligned_cols=38  Identities=8%  Similarity=0.019  Sum_probs=19.7

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHhHhhhhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~~~~~~~  678 (694)
                      ..||+|+||.||+|+-. +|..||||+......+...++
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~   59 (303)
T 2vwi_A           21 EVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDE   59 (303)
T ss_dssp             EECC---CCCEEEEEC----CEEEEECCC----------
T ss_pred             heeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHH
Confidence            68999999999999854 678999998765544433333

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=89.42  E-value=0.032  Score=55.24  Aligned_cols=31  Identities=23%  Similarity=0.258  Sum_probs=25.8

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+- .+|..||||+.....
T Consensus        37 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~   68 (312)
T 2iwi_A           37 PLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNR   68 (312)
T ss_dssp             EEEEEETTEEEEEEECTTTCCEEEEEECCSTT
T ss_pred             eEEEcCCCEEEEEEEEccCCeEEEEEEEeccc
Confidence            7899999999999965 567799999876543

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=89.37  E-value=0.033  Score=54.40  Aligned_cols=30  Identities=10%  Similarity=-0.150  Sum_probs=26.0

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-.. |..||||+....
T Consensus        37 ~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~   67 (286)
T 3uqc_A           37 IFHGGVPPLQFWQALDTALDRQVALTFVDPQ   67 (286)
T ss_dssp             EEEEBSTTCEEEEEEETTTTEEEEEEESCTT
T ss_pred             EEEcccCCeEEEEEEecCCCceEEEEEECcc
Confidence            689999999999999754 789999988654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=89.37  E-value=0.038  Score=55.21  Aligned_cols=30  Identities=13%  Similarity=0.209  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+- .+|..||||+....
T Consensus        21 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~   51 (328)
T 3fe3_A           21 KTIGKGNFAKVKLARHILTGREVAIKIIDKT   51 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGG
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhh
Confidence            6899999999999985 68889999987544

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=89.33  E-value=0.025  Score=55.31  Aligned_cols=29  Identities=7%  Similarity=0.029  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-.+|..||||+...
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~aiK~~~~   36 (288)
T 1ob3_A            8 EKIGEGTYGVVYKAQNNYGETFALKKIRL   36 (288)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEEECC
T ss_pred             hhcccCCCEEEEEEEcCCCCEEEEEEEec
Confidence            47999999999999988888999997644

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=89.27  E-value=0.026  Score=54.93  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=23.9

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..++..||||+....
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~   59 (283)
T 3gen_A           30 KELGTGQFGVVKYGKWRGQYDVAIKMIKEG   59 (283)
T ss_dssp             EECC---CEEEEEEEETTTEEEEEEEECTT
T ss_pred             hhcCCCCCceEEEEEEcCCCeEEEEEecCC
Confidence            689999999999999998889999987654

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=89.18  E-value=0.038  Score=55.65  Aligned_cols=31  Identities=13%  Similarity=0.252  Sum_probs=26.3

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      .+||+|+||.||+|+.. +|..||||+.....
T Consensus        23 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~   54 (345)
T 1xjd_A           23 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDV   54 (345)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhHH
Confidence            68999999999999975 57799999876543

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=89.16  E-value=0.036  Score=55.57  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=26.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+- ..|..||||+......
T Consensus        15 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~   47 (336)
T 3h4j_B           15 ETLGEGSFGKVKLATHYKTQQKVALKFISRQLL   47 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEehHHc
Confidence            6899999999999995 6778999998765543

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=89.14  E-value=0.034  Score=55.11  Aligned_cols=30  Identities=10%  Similarity=0.100  Sum_probs=26.0

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+ ..+|..||||+....
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   48 (311)
T 3ork_A           18 EILGFGGMSEVHLARDLRDHRDVAVKVLRAD   48 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECTT
T ss_pred             EEEccCCCEEEEEEEECCCCceEEEEEeCcc
Confidence            689999999999998 477889999987654

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=89.11  E-value=0.037  Score=53.40  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=23.8

Q ss_pred             ccceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ...||+|+||.||+|+.. |..||||+....
T Consensus        12 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~   41 (271)
T 3dtc_A           12 EEIIGIGGFGKVYRAFWI-GDEVAVKAARHD   41 (271)
T ss_dssp             EEEEEEETTEEEEEEEET-TEEEEEEEC---
T ss_pred             eeeeccCCCeEEEEEEEc-CCeEEEEEEecC
Confidence            368999999999999974 788999987543

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=89.11  E-value=0.038  Score=54.11  Aligned_cols=33  Identities=12%  Similarity=0.267  Sum_probs=26.3

Q ss_pred             Ccccceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         638 NSKSFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       638 ~~~~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ....+||+|+||.||+|+ ..+|..||||+....
T Consensus        25 ~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~   58 (295)
T 2clq_A           25 GDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER   58 (295)
T ss_dssp             SSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC
T ss_pred             CCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC
Confidence            344699999999999998 456779999976543

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=89.09  E-value=0.031  Score=54.26  Aligned_cols=30  Identities=20%  Similarity=0.147  Sum_probs=26.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..++..||||+....
T Consensus        19 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~   48 (279)
T 1qpc_A           19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQG   48 (279)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTT
T ss_pred             eeecCCCCeEEEEEEEcCCcEEEEEEecCC
Confidence            689999999999999988888999987543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=89.08  E-value=0.03  Score=55.03  Aligned_cols=30  Identities=7%  Similarity=0.182  Sum_probs=23.2

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+- .+|..||||+....
T Consensus        19 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~   49 (298)
T 2zv2_A           19 DEIGKGSYGVVKLAYNENDNTYYAMKVLSKK   49 (298)
T ss_dssp             EEEEC--CCEEEEEEETTTTEEEEEEEEECC
T ss_pred             eEEeecCCEEEEEEEECCCCcEEEEEEeehh
Confidence            6899999999999974 46789999987543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=89.05  E-value=0.052  Score=56.12  Aligned_cols=30  Identities=10%  Similarity=0.168  Sum_probs=26.1

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ++||+|+||.||+|+.. +|..||||+....
T Consensus        67 ~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~   97 (412)
T 2vd5_A           67 KVIGRGAFSEVAVVKMKQTGQVYAMKIMNKW   97 (412)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHH
Confidence            78999999999999985 6889999987653

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=88.85  E-value=0.033  Score=58.62  Aligned_cols=29  Identities=17%  Similarity=0.112  Sum_probs=26.5

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|+..++..||||+...
T Consensus       194 ~~lG~G~fg~V~~~~~~~~~~vavK~~~~  222 (454)
T 1qcf_A          194 KKLGAGQFGEVWMATYNKHTKVAVKTMKP  222 (454)
T ss_dssp             EEEECCSSEEEEEEEETTTEEEEEEEECT
T ss_pred             EEcccCCceEEEEEEECCccEEEEEEecC
Confidence            78999999999999998888999998764

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=88.84  E-value=0.048  Score=55.07  Aligned_cols=32  Identities=6%  Similarity=0.076  Sum_probs=26.2

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+- .+|..||||+......
T Consensus        30 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~   62 (351)
T 3c0i_A           30 EVIGKGPFSVVRRCINRETGQQFAVKIVDVAKF   62 (351)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH
T ss_pred             eEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhc
Confidence            6899999999999975 4678999998765443

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=88.83  E-value=0.027  Score=57.25  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|+-.+|..||||+...
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~   56 (362)
T 3pg1_A           28 RFISSGSYGAVCAGVDSEGIPVAIKRVFN   56 (362)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEEEEEECE
T ss_pred             EEeccCCCEEEEEEECCCCCeEEEEeccc
Confidence            78999999999999988899999997644

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=88.83  E-value=0.041  Score=55.09  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=24.2

Q ss_pred             ccceeecccceeeehhhhhh-----hhHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVIILS-----AMVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g-----~~vaV~~~~~~  670 (694)
                      .+.||+|+||.||+|+....     ..||||+....
T Consensus        49 ~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~   84 (333)
T 1mqb_A           49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG   84 (333)
T ss_dssp             EEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTT
T ss_pred             ccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCC
Confidence            37899999999999987643     25999987654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=88.80  E-value=0.034  Score=56.78  Aligned_cols=33  Identities=12%  Similarity=0.027  Sum_probs=21.9

Q ss_pred             cccceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         639 SKSFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       639 ~~~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      ..++||+|+||.||+|+. .+|..||||+.....
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~  126 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG  126 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCS
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc
Confidence            346899999999999985 568899999876543

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=88.71  E-value=0.048  Score=56.86  Aligned_cols=30  Identities=13%  Similarity=0.192  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+-. +|..||||+....
T Consensus       103 ~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~  133 (429)
T 3kvw_A          103 KVIGKGSFGQVVKAYDHKVHQHVALKMVRNE  133 (429)
T ss_dssp             EEEEESSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred             EEcccCccEEEEEEEECCCCcEEEEEEECCc
Confidence            68999999999999654 4779999987543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=88.70  E-value=0.049  Score=52.80  Aligned_cols=31  Identities=13%  Similarity=0.099  Sum_probs=26.1

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+- .+|..||||+.....
T Consensus        17 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~   48 (278)
T 3cok_A           17 NLLGKGSFAGVYRAESIHTGLEVAIKMIDKKA   48 (278)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             eeecCCCceEEEEEEEccCCceEEEEEeehhh
Confidence            6899999999999985 578899999875543

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=88.64  E-value=0.03  Score=55.55  Aligned_cols=31  Identities=10%  Similarity=-0.013  Sum_probs=20.4

Q ss_pred             ccceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      -..||+|+||.||+|+.. +|..||||+....
T Consensus        30 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   61 (318)
T 2dyl_A           30 LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRS   61 (318)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEEEETT
T ss_pred             cceeeecCCeeEEEEEEecCCeEEEEEEeccc
Confidence            368999999999999885 6889999987654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=88.54  E-value=0.038  Score=55.67  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhHhH
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHLYR  673 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~  673 (694)
                      ..||+|+||.||+|+. +|..||||+.......
T Consensus        37 ~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~   68 (348)
T 2pml_X           37 RTLNQGKFNKIILCEK-DNKFYALKKYEKSLLE   68 (348)
T ss_dssp             EEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHS
T ss_pred             EEEcCCCCeEEEEEEc-CCceEEEEEeeccccc
Confidence            6899999999999999 8999999988766543

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=88.51  E-value=0.039  Score=55.76  Aligned_cols=30  Identities=13%  Similarity=0.268  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      .+||+|+||.||+|+.. +|..||||+....
T Consensus        29 ~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~   59 (353)
T 3txo_A           29 RVLGKGSFGKVMLARVKETGDLYAVKVLKKD   59 (353)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHH
T ss_pred             EEEeeCCCEEEEEEEEcCCCCEEEEEEEEHH
Confidence            68999999999999864 5789999987654

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=88.51  E-value=0.054  Score=56.81  Aligned_cols=31  Identities=13%  Similarity=0.199  Sum_probs=26.1

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|+- .+|..||||+.....
T Consensus       154 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~  185 (446)
T 4ejn_A          154 KLLGKGTFGKVILVKEKATGRYYAMKILKKEV  185 (446)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhh
Confidence            6899999999999984 567899999886554

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=88.32  E-value=0.037  Score=56.28  Aligned_cols=31  Identities=19%  Similarity=0.095  Sum_probs=24.3

Q ss_pred             cceeecccceeeehhhhhh------hhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIILS------AMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g------~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+..++      ..||||+.....
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~   77 (364)
T 3op5_A           41 LPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDN   77 (364)
T ss_dssp             EECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTC
T ss_pred             EEEecCCCeEEEEeeecCccccccccceEEEEeeccc
Confidence            6899999999999987664      689999865443

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=88.29  E-value=0.049  Score=55.39  Aligned_cols=29  Identities=7%  Similarity=-0.057  Sum_probs=25.7

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||.|+||.||+|+.. +|..||||+...
T Consensus       100 ~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~  129 (365)
T 2y7j_A          100 DVIGRGVSSVVRRCVHRATGHEFAVKIMEV  129 (365)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEET
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEc
Confidence            78999999999999985 789999998654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=88.20  E-value=0.04  Score=54.00  Aligned_cols=29  Identities=21%  Similarity=0.196  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhh-----hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-----ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-----~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|++     .+|..||||+...
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~   49 (295)
T 3ugc_A           16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH   49 (295)
T ss_dssp             EEEEECSSEEEEEEEECTTCSSCCEEEEEEEESC
T ss_pred             heeeccCCEEEEEEEEecccCCCCcEEEEEEccc
Confidence            6899999999999984     3677999998654

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=88.19  E-value=0.049  Score=54.65  Aligned_cols=31  Identities=13%  Similarity=0.179  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~   42 (337)
T 1o6l_A           11 KLLGKGTFGKVILVREKATGRYYAMKILRKEV   42 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEeHHH
Confidence            68999999999999865 57899999876543

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=88.03  E-value=0.041  Score=54.95  Aligned_cols=30  Identities=10%  Similarity=0.094  Sum_probs=25.7

Q ss_pred             cceeecccceeeehhh----hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI----ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l----~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.    .+|..||||+....
T Consensus        23 ~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~   56 (327)
T 3a62_A           23 RVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKA   56 (327)
T ss_dssp             EEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC
T ss_pred             EEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHH
Confidence            6899999999999987    57889999987643

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=87.92  E-value=0.041  Score=55.64  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=26.3

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~  671 (694)
                      .+||+|+||.||+|+-.. |..||||+.....
T Consensus        26 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~   57 (353)
T 2i0e_A           26 MVLGKGSFGKVMLSERKGTDELYAVKILKKDV   57 (353)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEEEEEHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH
Confidence            689999999999999864 6799999876654

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=87.79  E-value=0.054  Score=55.91  Aligned_cols=31  Identities=10%  Similarity=0.136  Sum_probs=26.0

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+... |.+||||+.....
T Consensus        75 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~  106 (410)
T 3v8s_A           75 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFE  106 (410)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEEcCCCEEEEEEEECCCCcEEEEEEEehhh
Confidence            789999999999998764 6799999876543

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=87.78  E-value=0.043  Score=57.00  Aligned_cols=29  Identities=14%  Similarity=0.230  Sum_probs=24.9

Q ss_pred             ccceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329         640 KSFLTLGNFGLISVGVII-LSAMVYFSFYA  668 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~  668 (694)
                      .++||+|+||.||+|+.. +|..||||...
T Consensus        59 ~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~   88 (420)
T 1j1b_A           59 TKVIGNGSFGVVYQAKLCDSGELVAIKKVL   88 (420)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             eeEEeeCCCEEEEEEEECCCCcEEEEEEec
Confidence            368999999999999985 58899999764

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=87.77  E-value=0.063  Score=55.14  Aligned_cols=29  Identities=17%  Similarity=0.143  Sum_probs=24.8

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+ ..+|..||||+...
T Consensus        43 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   72 (397)
T 1wak_A           43 RKLGWGHFSTVWLSWDIQGKKFVAMKVVKS   72 (397)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred             EEeeecCCeeEEEEEecCCCeEEEEEEEec
Confidence            679999999999997 45678999998754

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=87.77  E-value=0.034  Score=54.25  Aligned_cols=29  Identities=21%  Similarity=0.272  Sum_probs=24.8

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|+. .+|..||||+...
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   54 (287)
T 4f0f_A           25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLIL   54 (287)
T ss_dssp             EECCCCSSSCEEEEEETTTCCEEEEEECCC
T ss_pred             hccccCCceeEEEEEEcCCceEEEEEEeec
Confidence            6899999999999987 4777999998743

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=87.74  E-value=0.057  Score=54.36  Aligned_cols=30  Identities=3%  Similarity=0.111  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. +|..||||+....
T Consensus        15 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~   45 (345)
T 3a8x_A           15 RVIGRGSYAKVLLVRLKKTDRIYAMKVVKKE   45 (345)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGG
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEhH
Confidence            68999999999999875 4779999987654

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=87.74  E-value=0.043  Score=53.66  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=23.2

Q ss_pred             cceeecccceeeehhhh---hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII---LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|...   +|..||||+....
T Consensus        23 ~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~   55 (291)
T 1xbb_A           23 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNE   55 (291)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC--
T ss_pred             CccccccCeeeEeeeecCCCceeeEEEEeeccc
Confidence            48999999999999653   4568999987654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=87.71  E-value=0.051  Score=60.49  Aligned_cols=30  Identities=13%  Similarity=0.114  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhh--hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII--LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~--~g~~vaV~~~~~~  670 (694)
                      ..||+||||.||+|+..  +|..||||+....
T Consensus        86 ~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~  117 (681)
T 2pzi_A           86 GCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS  117 (681)
T ss_dssp             EEEEEETTEEEEEEEEGGGTTEEEEEEESCSS
T ss_pred             EEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc
Confidence            68999999999999875  5789999987543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=87.71  E-value=0.03  Score=56.69  Aligned_cols=29  Identities=10%  Similarity=0.127  Sum_probs=25.3

Q ss_pred             cceeecccceeeehhh----hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI----ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l----~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|+.    .+|..||||+...
T Consensus        60 ~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~   92 (355)
T 1vzo_A           60 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKK   92 (355)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEEEEESE
T ss_pred             EEeccCCCEEEEEEEEcccCCCCeEEEEEEEeH
Confidence            7899999999999987    4788999998754

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=87.61  E-value=0.047  Score=54.39  Aligned_cols=40  Identities=8%  Similarity=0.111  Sum_probs=29.7

Q ss_pred             ccccccccCcc----cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         630 SYINMEKLNSK----SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       630 s~~~l~~~~~~----~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      .+.++....+.    ..||+|+||.||+|+. .+|..||||+...
T Consensus        15 ~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~   59 (326)
T 2x7f_A           15 DLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDV   59 (326)
T ss_dssp             -CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEec
Confidence            44444444433    7899999999999987 4778999998643

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=87.56  E-value=0.032  Score=55.67  Aligned_cols=28  Identities=25%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             cceeecccceeeehhh-hhhhh----HHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAM----VYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~----vaV~~~~  668 (694)
                      ..||+|+||.||+|+. .+|..    ||||+..
T Consensus        19 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~   51 (325)
T 3kex_A           19 KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIE   51 (325)
T ss_dssp             EEEECCSSCEEEEEEECCTTCSCCEEEEEEEEC
T ss_pred             eeeeecCCceEEEEEEcCCCceEEEEEEEEecc
Confidence            6899999999999985 45555    5666543

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=87.53  E-value=0.029  Score=55.76  Aligned_cols=30  Identities=13%  Similarity=0.072  Sum_probs=17.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. +|..||||+....
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~   41 (317)
T 2pmi_A           11 EKLGNGTYATVYKGLNKTTGVYVALKEVKLD   41 (317)
T ss_dssp             --------CEEEEEECSSSCCEEEEEEEECC
T ss_pred             eEECCCCCEEEEEEEECCCCcEEEEEEeecc
Confidence            57999999999999764 5789999987543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=87.47  E-value=0.033  Score=56.20  Aligned_cols=31  Identities=16%  Similarity=0.083  Sum_probs=24.1

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+.. +|..||||+.....
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~   47 (346)
T 1ua2_A           16 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGH   47 (346)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC----
T ss_pred             eEEeecCCEEEEEEEECCCCcEEEEEEEecCC
Confidence            68999999999999875 47899999876543

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=87.47  E-value=0.063  Score=53.38  Aligned_cols=30  Identities=17%  Similarity=0.237  Sum_probs=21.2

Q ss_pred             cceeecccceeeehhhhhhh----hHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSA----MVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~----~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.....    .||||+....
T Consensus        29 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~   62 (323)
T 3qup_A           29 RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKAD   62 (323)
T ss_dssp             EEEEEETTEEEEEEEC-------CEEEEEEC---
T ss_pred             ceecccCCeEEEEEEEcccCCcceeEEEEEeccc
Confidence            68999999999999876554    6899987654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=87.46  E-value=0.064  Score=56.56  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=27.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+-. +|..||||+......
T Consensus        22 ~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~   54 (476)
T 2y94_A           22 DTLGVGTFGKVKVGKHELTGHKVAVKILNRQKI   54 (476)
T ss_dssp             EEEECCSSSCEEEEEETTTCCEEEEEEEEHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhc
Confidence            68999999999999865 688999998866543

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=87.35  E-value=0.054  Score=54.17  Aligned_cols=27  Identities=11%  Similarity=-0.004  Sum_probs=23.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFY  667 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~  667 (694)
                      ..||+|+||.||+|+- .+|..||||+.
T Consensus        34 ~~lg~G~~g~V~~~~~~~~~~~vavK~~   61 (337)
T 3ll6_A           34 RVLAEGGFAFVYEAQDVGSGREYALKRL   61 (337)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEE
T ss_pred             EEEccCCceEEEEEEECCCCcEEEEEEe
Confidence            7899999999999994 57789999976

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=87.21  E-value=0.051  Score=55.63  Aligned_cols=29  Identities=14%  Similarity=0.084  Sum_probs=23.7

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- .+|..||||+...
T Consensus        13 ~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~   42 (383)
T 3eb0_A           13 KTLGTGSFGIVCEVFDIESGKRFALKKVLQ   42 (383)
T ss_dssp             EEEECC-CEEEEEEEETTTCCEEEEEEEEC
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEec
Confidence            6899999999999974 6788999997643

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=87.14  E-value=0.051  Score=54.85  Aligned_cols=30  Identities=10%  Similarity=-0.090  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+... |..||||+....
T Consensus        59 ~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~   89 (349)
T 2w4o_A           59 SELGRGATSIVYRCKQKGTQKPYALKVLKKT   89 (349)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEC-
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEeccc
Confidence            689999999999999864 568999987643

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=87.14  E-value=0.051  Score=52.23  Aligned_cols=30  Identities=20%  Similarity=0.281  Sum_probs=26.7

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..++..||||+....
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~   43 (267)
T 3t9t_A           14 QEIGSGQFGLVHLGYWLNKDKVAIKTIREG   43 (267)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTT
T ss_pred             eEecCCCceeEEEEEecCCCeEEEEEcccc
Confidence            679999999999999988889999987654

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=87.13  E-value=0.025  Score=55.02  Aligned_cols=30  Identities=13%  Similarity=0.094  Sum_probs=25.3

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. +|..||||+....
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~   41 (283)
T 3bhy_A           11 EELGSGQFAIVRKCRQKGTGKEYAAKFIKKR   41 (283)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBC
T ss_pred             HhhcccCceEEEEEEEcCCCCeeehHHhhhc
Confidence            57999999999999886 5789999976543

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=87.11  E-value=0.051  Score=53.98  Aligned_cols=31  Identities=13%  Similarity=0.139  Sum_probs=26.2

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        12 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~   43 (318)
T 1fot_A           12 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEI   43 (318)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHH
Confidence            68999999999999875 67899999876543

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=87.06  E-value=0.044  Score=57.12  Aligned_cols=34  Identities=18%  Similarity=0.062  Sum_probs=26.1

Q ss_pred             ccceeecccceeeehhhhhhhhHHHHHHHhhHhH
Q psy3329         640 KSFLTLGNFGLISVGVIILSAMVYFSFYARHLYR  673 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~~~  673 (694)
                      ..+||+|+||+||.....+|+.||||+.......
T Consensus        29 ~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~   62 (432)
T 3p23_A           29 KDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS   62 (432)
T ss_dssp             EEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE
T ss_pred             CCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH
Confidence            4789999999966555668899999987654433

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=87.01  E-value=0.056  Score=52.53  Aligned_cols=30  Identities=10%  Similarity=0.031  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. +|..||||+....
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   47 (284)
T 2a19_B           17 ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN   47 (284)
T ss_dssp             EEEECSSSCCEEEEEETTTCCEEEEEEEECC
T ss_pred             eeeccCCceEEEEEEEcCCCeEEEEEEeccc
Confidence            68999999999999986 7889999987543

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=86.99  E-value=0.039  Score=54.72  Aligned_cols=30  Identities=13%  Similarity=0.182  Sum_probs=25.0

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      .+||+|+||.||+|+ ..+|..||||+....
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   49 (316)
T 2ac3_A           19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQ   49 (316)
T ss_dssp             CCCCCCSSEEEEEEECSSSCCEEEEEEEECC
T ss_pred             ceecCCceEEEEEEEEcCCCcEEEEEEEeeC
Confidence            579999999999998 457889999987543

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=86.91  E-value=0.07  Score=53.33  Aligned_cols=29  Identities=17%  Similarity=0.096  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhh--hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI--ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l--~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-  .+|..||||+...
T Consensus        20 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~   50 (339)
T 1z57_A           20 DTLGEGAFGKVVECIDHKAGGRHVAVKIVKN   50 (339)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECS
T ss_pred             EEEecCCCeEEEEEEecCCCCcEEEEEEEec
Confidence            6799999999999974  5788999998753

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=86.86  E-value=0.063  Score=54.69  Aligned_cols=31  Identities=10%  Similarity=0.168  Sum_probs=26.1

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~  671 (694)
                      ++||+|+||.||+|+... |..||||+.....
T Consensus        44 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~   75 (373)
T 2r5t_A           44 KVIGKGSFGKVLLARHKAEEVFYAVKVLQKKA   75 (373)
T ss_dssp             EEEECCTTCEEEEEEETTTCCEEEEEEEEGGG
T ss_pred             EEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHH
Confidence            789999999999998764 5689999886554

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=86.86  E-value=0.054  Score=54.16  Aligned_cols=31  Identities=16%  Similarity=0.138  Sum_probs=24.0

Q ss_pred             cceeecccceeeehhhhh-h-----hhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL-S-----AMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g-----~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+... |     ..||||+.....
T Consensus        52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~   88 (333)
T 2i1m_A           52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA   88 (333)
T ss_dssp             EEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC
T ss_pred             eEeccCCCcceEEEEecCCCcccchhHHHHHhccccc
Confidence            789999999999998643 2     368998876543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=86.84  E-value=0.066  Score=52.17  Aligned_cols=30  Identities=23%  Similarity=0.163  Sum_probs=25.3

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+... |..||||+....
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~   49 (288)
T 3kfa_A           19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED   49 (288)
T ss_dssp             EESGGGTTCSEEEEEEGGGTEEEEEEEECSC
T ss_pred             eecCCCCceeEEEeEecCCCEEEEEEecCcC
Confidence            689999999999999876 568999987543

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=86.81  E-value=0.039  Score=56.15  Aligned_cols=29  Identities=17%  Similarity=0.165  Sum_probs=21.0

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+ ..+|..||||+...
T Consensus        35 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~   64 (367)
T 2fst_X           35 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSR   64 (367)
T ss_dssp             EECC----CCEEEEEETTTTEEEEEEECSS
T ss_pred             eEEeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence            689999999999997 56788999998754

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=86.75  E-value=0.051  Score=53.88  Aligned_cols=29  Identities=21%  Similarity=-0.004  Sum_probs=19.8

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-.. |..||||+...
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   46 (320)
T 2i6l_A           17 KPLGCGGNGLVFSAVDNDCDKRVAIKKIVL   46 (320)
T ss_dssp             EECC-----CEEEEEETTTTEEEEEEEEEC
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEec
Confidence            679999999999999875 78999997643

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=86.74  E-value=0.028  Score=57.05  Aligned_cols=32  Identities=13%  Similarity=0.039  Sum_probs=26.3

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+-. +|..||||+......
T Consensus        18 ~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~   50 (361)
T 2yab_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQS   50 (361)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEBCSS
T ss_pred             eEEeeCcCEEEEEEEECCCCCEEEEEEEEcccc
Confidence            68999999999999865 578999998765443

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=86.63  E-value=0.058  Score=58.96  Aligned_cols=30  Identities=17%  Similarity=0.112  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||.|+||.||+|+. .+|..||||+....
T Consensus        20 ~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~   50 (676)
T 3qa8_A           20 ERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE   50 (676)
T ss_dssp             CCCCBCSSSBCCCCCCTTTTCCEEECCCCSC
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEeccc
Confidence            6899999999999987 45889999986543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=86.57  E-value=0.021  Score=56.45  Aligned_cols=28  Identities=11%  Similarity=0.089  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+- .+|..||||+..
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~   43 (308)
T 3g33_A           15 AEIGVGAYGTVYKARDPHSGHFVALKSVR   43 (308)
T ss_dssp             EEECCSSSCCEEEEECTTTCCEEEEEEEE
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEe
Confidence            6799999999999984 577899999875

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=86.50  E-value=0.046  Score=54.65  Aligned_cols=41  Identities=15%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             CccccccccCcccceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329         629 PSYINMEKLNSKSFLTLGNFGLISVGVIIL-SAMVYFSFYAR  669 (694)
Q Consensus       629 ~s~~~l~~~~~~~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~  669 (694)
                      .-|..+.+-.--..||+|+||.||+|+-.+ |..||||+...
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   60 (331)
T 4aaa_A           19 LYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLE   60 (331)
T ss_dssp             CCCBCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEES
T ss_pred             hhhhhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEec
Confidence            334444444555799999999999998765 77999997643

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=86.45  E-value=0.082  Score=56.92  Aligned_cols=32  Identities=16%  Similarity=0.159  Sum_probs=26.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~  672 (694)
                      ++||+|+||.||+|+.. +|..||||+......
T Consensus       190 ~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~  222 (576)
T 2acx_A          190 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRI  222 (576)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhh
Confidence            78999999999999875 688999998765543

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=86.42  E-value=0.061  Score=54.77  Aligned_cols=29  Identities=14%  Similarity=0.200  Sum_probs=24.8

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- .+|..||||+...
T Consensus        48 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~   77 (371)
T 4exu_A           48 THVGSGAYGSVCSAIDKRSGEKVAIKKLSR   77 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence            6899999999999974 4688999998754

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=86.37  E-value=0.09  Score=51.91  Aligned_cols=30  Identities=10%  Similarity=0.127  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. +|..||||+....
T Consensus        40 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~   70 (309)
T 2h34_A           40 RLVGRGGMGDVYEAEDTVRERIVALKLMSET   70 (309)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEECGGG
T ss_pred             EEEcCCCCeeEEEEEEcCCCeEEEEEecCcc
Confidence            68999999999999864 6789999987654

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=86.31  E-value=0.083  Score=51.04  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=26.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+.. +|..||||+.....
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~   48 (276)
T 2h6d_A           17 DTLGVGTFGKVKIGEHQLTGHKVAVKILNRQK   48 (276)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             eeecCCCCeEEEEEEECCCCceEEEEEecccc
Confidence            67999999999999875 78899999876554

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=86.31  E-value=0.042  Score=54.35  Aligned_cols=29  Identities=10%  Similarity=0.099  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+... |..||||+...
T Consensus         9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   38 (311)
T 4agu_A            9 GKIGEGSYGVVFKCRNRDTGQIVAIKKFLE   38 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECC
T ss_pred             eEEeecCCeEEEEEEeCCCCcEEEEEEeec
Confidence            579999999999998754 78999997643

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=86.26  E-value=0.061  Score=53.62  Aligned_cols=30  Identities=27%  Similarity=0.259  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhh-----hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-----ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-----~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.     .+|..||||+....
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~   63 (327)
T 3lxl_A           29 SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS   63 (327)
T ss_dssp             EEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC
T ss_pred             hhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC
Confidence            6899999999999984     56779999987544

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=86.23  E-value=0.091  Score=50.89  Aligned_cols=31  Identities=13%  Similarity=0.110  Sum_probs=24.9

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-.. |..||||+.....
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~   46 (279)
T 3fdn_A           15 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQ   46 (279)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             eEEecCCCeEEEEEEEccCCcEEEEEEEeccc
Confidence            689999999999997654 4589999875544

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=86.19  E-value=0.065  Score=52.94  Aligned_cols=29  Identities=14%  Similarity=0.035  Sum_probs=24.2

Q ss_pred             ccceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329         640 KSFLTLGNFGLISVGVII-LSAMVYFSFYA  668 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~  668 (694)
                      .+.||+|+||.||+|+.. +|..||||+..
T Consensus        15 ~~~lG~G~~g~V~~~~~~~~~~~va~K~~~   44 (310)
T 3s95_A           15 GEVLGKGCFGQAIKVTHRETGEVMVMKELI   44 (310)
T ss_dssp             EEEEECCSSEEEEEEEETTTCCEEEEEEES
T ss_pred             cceecCCCCEEEEEEEECCCCcEEEEEEec
Confidence            368999999999999874 57799998653

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=86.14  E-value=0.054  Score=54.09  Aligned_cols=30  Identities=13%  Similarity=0.167  Sum_probs=25.4

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+ ..+|..||||+....
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~   70 (329)
T 3gbz_A           40 TKLGEGTYGEVYKAIDTVTNETVAIKRIRLE   70 (329)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEECCCC
T ss_pred             EEEEecCCeEEEEEEECCCCceEEEEEEccc
Confidence            689999999999997 557889999987543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=86.14  E-value=0.085  Score=55.35  Aligned_cols=30  Identities=20%  Similarity=0.107  Sum_probs=26.6

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..++..||||+....
T Consensus       190 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~  219 (452)
T 1fmk_A          190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPG  219 (452)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTT
T ss_pred             eeecCCCCeEEEEEEECCCceEEEEEeccC
Confidence            689999999999999988888999987643

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=86.12  E-value=0.048  Score=53.34  Aligned_cols=30  Identities=10%  Similarity=0.037  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. +|..||||+....
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   38 (292)
T 3o0g_A            8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLD   38 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESS
T ss_pred             eEecCCCCeEEEEEEECCCCceEEEEeeecc
Confidence            57999999999999875 5779999987543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=86.10  E-value=0.029  Score=55.85  Aligned_cols=31  Identities=13%  Similarity=0.060  Sum_probs=25.7

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~   49 (321)
T 2a2a_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQ   49 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCS
T ss_pred             eEeeecCCEEEEEEEECCCCeEEEEEEEeccc
Confidence            68999999999999865 57899999876543

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=86.09  E-value=0.079  Score=51.83  Aligned_cols=31  Identities=13%  Similarity=-0.038  Sum_probs=25.3

Q ss_pred             ccceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVIIL-SAMVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~  670 (694)
                      ...||+|+||.||+|+..+ |..||+|+....
T Consensus        20 ~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~   51 (294)
T 2rku_A           20 GRFLGKGGFAKCFEISDADTKEVFAGKIVPKS   51 (294)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEGG
T ss_pred             EEEEeecCCEEEEEEEECCCCceEEEEEechh
Confidence            3789999999999999864 568899886544

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=86.09  E-value=0.064  Score=56.31  Aligned_cols=29  Identities=17%  Similarity=0.205  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. |+.||||+....
T Consensus       199 ~~lG~G~fg~V~~~~~~-~~~vavK~~~~~  227 (450)
T 1k9a_A          199 QTIGKGEFGDVMLGDYR-GNKVAVKCIKND  227 (450)
T ss_dssp             EEEEECSSEEEEEEEET-TEEEEEEEESSC
T ss_pred             eeecCcCCeeEEEEEec-CCeEEEEEeCCc
Confidence            78999999999999985 779999987643

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=85.98  E-value=0.08  Score=51.99  Aligned_cols=29  Identities=14%  Similarity=0.013  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      .+||+|+||.||+|+- .+|..||||+...
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   53 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD   53 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEecc
Confidence            5799999999999975 5677999998754

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=85.91  E-value=0.08  Score=55.75  Aligned_cols=30  Identities=17%  Similarity=0.217  Sum_probs=25.1

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+ ...|..||||+....
T Consensus        68 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~   98 (464)
T 3ttj_A           68 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP   98 (464)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEESG
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEECcc
Confidence            689999999999996 446789999987643

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=85.90  E-value=0.059  Score=52.78  Aligned_cols=28  Identities=25%  Similarity=0.400  Sum_probs=24.7

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+ ..+|..||||+..
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~   44 (298)
T 1csn_A           16 RRIGEGSFGVIFEGTNLLNNQQVAIKFEP   44 (298)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEec
Confidence            679999999999999 4688899999764

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=85.89  E-value=0.075  Score=58.42  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhhh---hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII---LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|...   .|..||||+.....
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~  408 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA  408 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEecccc
Confidence            57999999999999764   45689999886543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=85.69  E-value=0.054  Score=55.94  Aligned_cols=30  Identities=7%  Similarity=-0.072  Sum_probs=19.9

Q ss_pred             cceeecccceeeehhhh---hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII---LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..   +|..||||+....
T Consensus        27 ~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~   59 (405)
T 3rgf_A           27 CKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT   59 (405)
T ss_dssp             CCCC-----EEEEEEESSSSCCCCEEEEECSSS
T ss_pred             cEeeecCCeEEEEEEEccCCCCeEEEEEEECCC
Confidence            57999999999999976   4668999987543

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=85.68  E-value=0.097  Score=50.86  Aligned_cols=31  Identities=13%  Similarity=0.099  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        20 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~   51 (284)
T 2vgo_A           20 RPLGKGKFGNVYLAREKQNKFIMALKVLFKSQ   51 (284)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHH
T ss_pred             heecCCCCeEEEEEEEcCCCcEEEEEEEcccc
Confidence            68999999999999875 46689999875543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=85.64  E-value=0.071  Score=53.82  Aligned_cols=29  Identities=14%  Similarity=0.200  Sum_probs=24.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- .+|..||||+...
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   59 (353)
T 3coi_A           30 THVGSGAYGSVCSAIDKRSGEKVAIKKLSR   59 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEESS
T ss_pred             eeEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence            6899999999999985 4688999998754

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=85.63  E-value=0.067  Score=52.98  Aligned_cols=28  Identities=11%  Similarity=-0.047  Sum_probs=22.5

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+- .+|..||||+..
T Consensus        35 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~   63 (317)
T 2buj_A           35 QKLGEGGFSYVDLVEGLHDGHFYALKRIL   63 (317)
T ss_dssp             EEEEC--CEEEEEEEETTTCCEEEEEEEE
T ss_pred             EEecCCCCeEEEEEEecCCCcEEEEEEEe
Confidence            6899999999999986 678899999763

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=85.62  E-value=0.096  Score=52.78  Aligned_cols=31  Identities=13%  Similarity=0.112  Sum_probs=26.2

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        47 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~   78 (350)
T 1rdq_E           47 KTLGTGSFGRVMLVKHKESGNHYAMKILDKQK   78 (350)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEeecCcCcEEEEEEECCCCCEEEEEEEEhHH
Confidence            68999999999999865 67899999876543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=85.61  E-value=0.084  Score=52.67  Aligned_cols=29  Identities=21%  Similarity=0.337  Sum_probs=24.1

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+ ..+|..||||+...
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   44 (330)
T 2izr_A           15 KKIGCGNFGELRLGKNLYTNEYVAIKLEPM   44 (330)
T ss_dssp             EECCC-CTTSEEEEEETTTTEEEEEEEEET
T ss_pred             EEeeccCCceEEEEEECCCCcEEEEEEecc
Confidence            689999999999998 46788999998654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=85.54  E-value=0.055  Score=52.62  Aligned_cols=29  Identities=14%  Similarity=0.064  Sum_probs=25.3

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-. +|..||||+...
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   46 (289)
T 1x8b_A           17 EKIGSGEFGSVFKCVKRLDGCIYAIKRSKK   46 (289)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             hhhcCCCceEEEEEEEcCCCceEEEEEecc
Confidence            68999999999999876 788999998654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=85.45  E-value=0.063  Score=52.44  Aligned_cols=27  Identities=19%  Similarity=0.127  Sum_probs=22.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+...  .||||+...
T Consensus        30 ~~lG~G~~g~Vy~~~~~~--~vavK~~~~   56 (289)
T 3og7_A           30 QRIGSGSFGTVYKGKWHG--DVAVKMLNV   56 (289)
T ss_dssp             EEEEECSSEEEEEEESSS--EEEEEEESC
T ss_pred             eEecCCCCeEEEEEEEcC--ceEEEEEec
Confidence            689999999999998754  388887754

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=85.34  E-value=0.035  Score=55.42  Aligned_cols=31  Identities=13%  Similarity=0.054  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~   48 (326)
T 2y0a_A           17 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRR   48 (326)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEBCC
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEccc
Confidence            67999999999999875 57799999876543

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=85.32  E-value=0.1  Score=55.85  Aligned_cols=32  Identities=13%  Similarity=0.114  Sum_probs=27.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~  672 (694)
                      ++||+|+||.||+|+.. +|..||||+......
T Consensus       191 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~  223 (543)
T 3c4z_A          191 RVLGRGGFGEVFACQMKATGKLYACKKLNKKRL  223 (543)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHh
Confidence            68999999999999975 588999998865543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=85.31  E-value=0.072  Score=52.09  Aligned_cols=28  Identities=21%  Similarity=0.221  Sum_probs=24.0

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+- .+|..||||+..
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~   43 (296)
T 4hgt_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLEC   43 (296)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEE
T ss_pred             eeecCCCCeEEEEEEEcCCCceEEEEeec
Confidence            6899999999999984 678899999743

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=85.15  E-value=0.068  Score=53.26  Aligned_cols=29  Identities=21%  Similarity=0.196  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhh-----hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-----ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-----~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+.     .+|..||||+...
T Consensus        47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~   80 (326)
T 2w1i_A           47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQH   80 (326)
T ss_dssp             EEEECCSSEEEEEEEECTTSSSCCEEEEEEEESS
T ss_pred             eeeccCCCeEEEEEEeccccCCCceEEEEEEecc
Confidence            6899999999999984     4678999998754

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=85.13  E-value=0.083  Score=51.78  Aligned_cols=29  Identities=17%  Similarity=0.127  Sum_probs=24.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- .+|..||||+...
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   41 (303)
T 1zy4_A           12 AVLGQGAFGQVVKARNALDSRYYAIKKIRH   41 (303)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEE
T ss_pred             heeccCCcEEEEEEEEcCCCeEEEEEEEec
Confidence            6799999999999985 4788999998743

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=85.11  E-value=0.065  Score=52.42  Aligned_cols=29  Identities=21%  Similarity=0.190  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- .+|..||||+...
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   44 (296)
T 3uzp_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECV   44 (296)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEEES
T ss_pred             EEEccCCCeEEEEEEEcCCCcEEEEEEecC
Confidence            6899999999999984 6888999997543

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=85.07  E-value=0.064  Score=52.60  Aligned_cols=30  Identities=10%  Similarity=0.081  Sum_probs=23.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. +|..||||+....
T Consensus         9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~   39 (299)
T 2r3i_A            9 EKIGEGTYGVVYKARNKLTGEVVALKKIRLD   39 (299)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEC---
T ss_pred             hhhccCCCeeEEEEEEcCCCceEEEEEeecC
Confidence            57999999999999875 6789999987544

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=85.07  E-value=0.11  Score=52.92  Aligned_cols=28  Identities=14%  Similarity=0.141  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+- .+|..||||+..
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~   53 (373)
T 1q8y_A           25 RKLGWGHFSTVWLAKDMVNNTHVAMKIVR   53 (373)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEC
T ss_pred             EeeeecCCeEEEEEEecCCCcEEEEEEec
Confidence            6899999999999984 678899999875

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=85.07  E-value=0.05  Score=54.31  Aligned_cols=30  Identities=13%  Similarity=0.152  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+-. +|..||||+....
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~   65 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKR   65 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehh
Confidence            67999999999999865 5789999987653

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=85.05  E-value=0.11  Score=50.92  Aligned_cols=32  Identities=9%  Similarity=0.076  Sum_probs=26.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~  672 (694)
                      ..||+|+||.||+|+-. +|..||||+......
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~   43 (305)
T 2wtk_C           11 DLLGEGSYGKVKEVLDSETLCRRAVKILKKKKL   43 (305)
T ss_dssp             CEEEECSSCEEEEEEBTTTCCEEEEEEECHHHH
T ss_pred             eEEecCCCeEEEEEEECCCCcEEEEEEeccccc
Confidence            68999999999999864 567899998765543

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=85.02  E-value=0.11  Score=50.74  Aligned_cols=28  Identities=7%  Similarity=-0.037  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+-. +|..||||+..
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~   51 (298)
T 1phk_A           23 EILGRGVSSVVRRCIHKPTCKEYAVKIID   51 (298)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred             eeecCCCceEEEEEEEcCcCceEEEEEEe
Confidence            68999999999999875 57799999864

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=84.97  E-value=0.077  Score=54.01  Aligned_cols=29  Identities=21%  Similarity=0.210  Sum_probs=24.6

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- .+|..||||+...
T Consensus        31 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   60 (371)
T 2xrw_A           31 KPIGSGAQGIVCAAYDAILERNVAIKKLSR   60 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred             eeeEecCCEEEEEEEECCCCceEEEEEecc
Confidence            6899999999999974 4678999998754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=84.90  E-value=0.098  Score=52.34  Aligned_cols=30  Identities=13%  Similarity=-0.027  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+++-.+ |..||||+....
T Consensus        47 ~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~   77 (335)
T 2owb_A           47 RFLGKGGFAKCFEISDADTKEVFAGKIVPKS   77 (335)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGG
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEechh
Confidence            789999999999998765 568999987544

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=84.78  E-value=0.1  Score=53.79  Aligned_cols=28  Identities=14%  Similarity=0.020  Sum_probs=24.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~  668 (694)
                      .+||+|+||.||+|+-. +|..||||+..
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~   96 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQ   96 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeC
Confidence            57999999999999864 57789999874

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=84.78  E-value=0.037  Score=55.90  Aligned_cols=30  Identities=13%  Similarity=0.030  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+. .+|..||||+....
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~   53 (351)
T 3mi9_A           23 AKIGQGTFGEVFKARHRKTGQKVALKKVLME   53 (351)
T ss_dssp             EECSSCSTTSEEEEEETTTCCEEEEEECCCS
T ss_pred             EEEecCCCcEEEEEEECCCCCEEEEEEEecc
Confidence            6899999999999987 57889999976443

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=84.72  E-value=0.097  Score=52.39  Aligned_cols=31  Identities=26%  Similarity=0.279  Sum_probs=26.1

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+ ..+|..||||+.....
T Consensus        30 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~   61 (335)
T 3dls_A           30 SPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEK   61 (335)
T ss_dssp             EECSSSSSCSEEEEEETTTTEEEEEEEEESTT
T ss_pred             eEEEecCCEEEEEEEECCCCcEEEEEEEehhh
Confidence            689999999999997 5678899999876543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=84.71  E-value=0.11  Score=52.97  Aligned_cols=31  Identities=13%  Similarity=0.190  Sum_probs=25.3

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-.+ |..||||+.....
T Consensus        21 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~   52 (384)
T 4fr4_A           21 RAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQK   52 (384)
T ss_dssp             EEEECCTTCCEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehhh
Confidence            689999999999998654 5689999875544

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=84.69  E-value=0.1  Score=51.50  Aligned_cols=29  Identities=14%  Similarity=0.166  Sum_probs=24.5

Q ss_pred             ccceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         640 KSFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      .+.||+|+||.||+|+.. |..||||+...
T Consensus        13 ~~~lg~G~~g~V~~~~~~-~~~vavK~~~~   41 (307)
T 2eva_A           13 EEVVGRGAFGVVCKAKWR-AKDVAIKQIES   41 (307)
T ss_dssp             EEEEECCSSSEEEEEEET-TEEEEEEECSS
T ss_pred             eeEeecCCCceEEEEEEC-CeeEEEEEecC
Confidence            368999999999999984 67899998753

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=84.61  E-value=0.084  Score=51.25  Aligned_cols=31  Identities=13%  Similarity=0.008  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|+-. +|..||||+.....
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~   43 (284)
T 3kk8_A           12 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKK   43 (284)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGG
T ss_pred             hhhcCcCCeEEEEEEEcCCCceEEEEEeeccc
Confidence            67999999999999854 57799999875543

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=84.55  E-value=0.12  Score=54.64  Aligned_cols=29  Identities=21%  Similarity=0.198  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+. .+|..||||+...
T Consensus        13 ~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~   42 (483)
T 3sv0_A           13 RKIGSGSFGEIYLGTNIQTNEEVAIKLENV   42 (483)
T ss_dssp             CCCEECSSCEEEEEEETTTCCEEEEEEEET
T ss_pred             EEEeeCCCEEEEEEEECCCCcEEEEEEecc
Confidence            6899999999999984 6788999997543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.54  E-value=2  Score=33.75  Aligned_cols=46  Identities=22%  Similarity=0.440  Sum_probs=23.0

Q ss_pred             cCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329          51 TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR   97 (694)
Q Consensus        51 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~   97 (694)
                      .++.|...+|.+|..|+.+.+..+ ++.|...+|.+|.+|+.+.+..
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            344444455555555555555432 4444445555555555555543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=84.47  E-value=0.11  Score=53.91  Aligned_cols=31  Identities=13%  Similarity=0.111  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|+-. +|..||||+.....
T Consensus       141 ~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~  172 (419)
T 3i6u_A          141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRK  172 (419)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGG
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEech
Confidence            67999999999999754 46799999876654

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=84.40  E-value=0.083  Score=53.20  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=23.7

Q ss_pred             cceeecccceeeehhhh-hh-hhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LS-AMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g-~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-. +| ..||||+...
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~   55 (355)
T 2eu9_A           25 GNLGEGTFGKVVECLDHARGKSQVALKIIRN   55 (355)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECS
T ss_pred             EEeeccCCeEEEEEEecCCCceEEEEEEEcc
Confidence            68999999999999753 33 6899998754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=84.28  E-value=0.12  Score=55.60  Aligned_cols=30  Identities=20%  Similarity=0.107  Sum_probs=26.5

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..++..||||+....
T Consensus       273 ~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~  302 (535)
T 2h8h_A          273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPG  302 (535)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECTT
T ss_pred             eecccCCCeEEEEEEECCCceEEEEEeCCC
Confidence            689999999999999988888999987643

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=84.20  E-value=0.041  Score=55.71  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=15.5

Q ss_pred             ccceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         640 KSFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ...||+|+||.||+|+.. +|..||||+...
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   58 (360)
T 3e3p_A           28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQ   58 (360)
T ss_dssp             C----------CEEEEETTTCCEEEEEEEEC
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEec
Confidence            368999999999999874 578999997643

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.08  E-value=1.5  Score=34.48  Aligned_cols=48  Identities=21%  Similarity=0.346  Sum_probs=37.2

Q ss_pred             CCCcchh-hhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCC
Q psy3329          27 NPIQPVE-GAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP   75 (694)
Q Consensus        27 ~~l~~i~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   75 (694)
                      ..++.|. .+|..|.+|+.+.|.. .++.+...+|.+|.+|+.+.+.+..
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence            3456666 7788888888888876 4777888888888888888887653

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=84.02  E-value=0.088  Score=51.66  Aligned_cols=30  Identities=17%  Similarity=0.057  Sum_probs=24.2

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+... |..||||+....
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~   55 (302)
T 2j7t_A           25 GELGDGAFGKVYKAKNKETGALAAAKVIETK   55 (302)
T ss_dssp             EEEECSTTCCEEEEEETTTCCEEEEEEEC--
T ss_pred             ceeccCCCeEEEEEEEcCCCcEEEEEEecCC
Confidence            579999999999999864 778999986543

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=84.00  E-value=0.075  Score=54.48  Aligned_cols=28  Identities=14%  Similarity=0.116  Sum_probs=16.8

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYA  668 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~  668 (694)
                      ..||+|+||.||+|+- .+|..||||+..
T Consensus        15 ~~lG~G~~g~V~~~~~~~~~~~vaiK~i~   43 (388)
T 3oz6_A           15 KKLGKGAYGIVWKSIDRRTGEVVAVKKIF   43 (388)
T ss_dssp             EC-------CEEEEEETTTCCEEEEEEEC
T ss_pred             EEeeeCCCeEEEEEEECCCCCEEEEEEec
Confidence            5799999999999974 567899999763

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=83.83  E-value=0.11  Score=52.23  Aligned_cols=31  Identities=13%  Similarity=0.293  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+- .+|..||||+.....
T Consensus        32 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~   63 (345)
T 3hko_A           32 GAIGQGSYGVVRVAIENQTRAIRAIKIMNKNK   63 (345)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             ceeeecCCeEEEEEEECCCCceEEEeehhhhh
Confidence            7899999999999976 455689999876554

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=83.53  E-value=0.12  Score=52.19  Aligned_cols=30  Identities=20%  Similarity=0.190  Sum_probs=23.7

Q ss_pred             cceeecccceeeehhhh---------hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII---------LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~---------~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..         +|..||||+....
T Consensus        48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~   86 (352)
T 2jii_A           48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD   86 (352)
T ss_dssp             EEEEEETTEEEEEEEECC-----------CEEEEEEETT
T ss_pred             EEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc
Confidence            68999999999999887         4889999987543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=83.50  E-value=0.11  Score=53.26  Aligned_cols=31  Identities=6%  Similarity=0.139  Sum_probs=25.7

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~~  671 (694)
                      .+||+|+||.||+|+... |..||||+.....
T Consensus        58 ~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~   89 (396)
T 4dc2_A           58 RVIGRGSYAKVLLVRLKKTDRIYAMRVVKKEL   89 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGGG
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhh
Confidence            689999999999998754 5689999876543

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=83.48  E-value=0.16  Score=49.71  Aligned_cols=27  Identities=19%  Similarity=0.130  Sum_probs=23.2

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFY  667 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~  667 (694)
                      ..||+|+||.||+|+ ..+|..||||+.
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~   44 (294)
T 4eqm_A           17 DKLGGGGMSTVYLAEDTILNIKVAIKAI   44 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCSEEEEEEE
T ss_pred             EEEccCCCEEEEEEEECCCCCeEEEEEe
Confidence            689999999999998 346779999976

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=83.48  E-value=0.077  Score=52.92  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=19.5

Q ss_pred             cceeecccceeeehh-hhhhhhHHHH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFS  665 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~  665 (694)
                      ..||+|+||.||+|+ ..+|..||+|
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~k   46 (327)
T 3lzb_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIP   46 (327)
T ss_dssp             EEEEECSSEEEEEEEECCTTCSCCEE
T ss_pred             EEeeeCCCeEEEEEEEcCCCceEEEE
Confidence            689999999999998 4566655433

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=83.41  E-value=0.11  Score=50.43  Aligned_cols=30  Identities=23%  Similarity=0.183  Sum_probs=23.7

Q ss_pred             cceeecccceeeehhhhhh--------hhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILS--------AMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g--------~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+....        ..||||+....
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~   51 (289)
T 4fvq_A           14 ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA   51 (289)
T ss_dssp             EEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG
T ss_pred             eeeccCCCceEEEEEEecccccccccchhhhhhhcccc
Confidence            6899999999999987652        35899887543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=83.38  E-value=0.069  Score=52.06  Aligned_cols=30  Identities=13%  Similarity=0.056  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. +|..||||+....
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~valK~~~~~   58 (287)
T 2wei_A           28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKA   58 (287)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGG
T ss_pred             EEEcCCCCEEEEEEEEcCCCcEEEEEEeccc
Confidence            68999999999999875 6779999987544

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=83.36  E-value=0.11  Score=51.69  Aligned_cols=31  Identities=13%  Similarity=0.114  Sum_probs=24.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~   47 (322)
T 2ycf_A           16 KTLGSGACGEVKLAFERKTCKKVAIKIISKRK   47 (322)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECC--
T ss_pred             eEEecCCCEEEEEEEEcCCCcEEEEEEeehhh
Confidence            67999999999999864 56799999875543

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=83.27  E-value=0.069  Score=51.72  Aligned_cols=29  Identities=7%  Similarity=-0.037  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+.. +|..||||+...
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   41 (279)
T 2w5a_A           12 YTIGTGSYGRCQKIRRKSDGKILVWKELDY   41 (279)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEC
T ss_pred             hhccCCCCcEEEEEEECCCCcEEEEEEEEc
Confidence            68999999999999875 677899998754

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=83.26  E-value=0.13  Score=51.04  Aligned_cols=29  Identities=10%  Similarity=-0.044  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhh--hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI--ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l--~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-  .+|..||||+...
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~   47 (326)
T 1blx_A           17 AEIGEGAYGKVFKARDLKNGGRFVALKRVRV   47 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEE
T ss_pred             eeecccccEEEEEEEecCCCCEEEEEEEecc
Confidence            6899999999999986  5788999998753

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=83.24  E-value=0.13  Score=54.75  Aligned_cols=29  Identities=24%  Similarity=0.164  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+... |..||||+...
T Consensus       226 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~  255 (495)
T 1opk_A          226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKE  255 (495)
T ss_dssp             EESGGGTTSSEEEEEEGGGTEEEEEEECCS
T ss_pred             eEecCCCCeEEEEEEEcCCCeEEEEEEecC
Confidence            789999999999999876 67899998754

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=83.19  E-value=0.1  Score=51.54  Aligned_cols=30  Identities=10%  Similarity=0.017  Sum_probs=23.3

Q ss_pred             ccceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         640 KSFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      .+.||+|+||.||+|+. .+|..||||+...
T Consensus        37 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~   67 (310)
T 2wqm_A           37 EKKIGRGQFSEVYRAACLLDGVPVALKKVQI   67 (310)
T ss_dssp             EEEEECC--CEEEEEEETTTCCEEEEEEECT
T ss_pred             EEeecCCCCceEEEEEEcCCCceEEEEeeeh
Confidence            47899999999999985 5788999997653

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=82.93  E-value=0.085  Score=52.13  Aligned_cols=30  Identities=23%  Similarity=0.223  Sum_probs=21.8

Q ss_pred             cceeecccceeeehhhhh----hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL----SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~----g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+...    |..||||+....
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~   73 (313)
T 3brb_A           40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLD   73 (313)
T ss_dssp             EEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---
T ss_pred             cceeecCCeEEEEEEEeccCCceeEEEEEEEecc
Confidence            689999999999998753    337999987644

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=82.93  E-value=0.1  Score=52.45  Aligned_cols=31  Identities=3%  Similarity=0.037  Sum_probs=25.8

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        28 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~   59 (342)
T 2qr7_A           28 EDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK   59 (342)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEETTT
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEccc
Confidence            68999999999999865 57799999876543

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=82.90  E-value=0.11  Score=55.22  Aligned_cols=31  Identities=13%  Similarity=0.031  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+-. +|..||||+.....
T Consensus        28 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~   59 (486)
T 3mwu_A           28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKAS   59 (486)
T ss_dssp             EEEECCSSSEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEeccc
Confidence            68999999999999864 67799999875544

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=82.87  E-value=0.1  Score=53.55  Aligned_cols=29  Identities=17%  Similarity=0.189  Sum_probs=23.7

Q ss_pred             ccceeecccceeeehhhhhhhhHHHHHHH
Q psy3329         640 KSFLTLGNFGLISVGVIILSAMVYFSFYA  668 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g~~vaV~~~~  668 (694)
                      ..+||+|+||.||+|+...+..||||...
T Consensus        45 ~~~lG~G~~g~V~~a~~~~~~~~aikk~~   73 (394)
T 4e7w_A           45 CKVIGNGSFGVVFQAKLVESDEVAIKKVL   73 (394)
T ss_dssp             EEEEEEETTEEEEEEEETTTEEEEEEEEE
T ss_pred             eEEEeeCCCeEEEEEEECCCCeEEEEEEe
Confidence            36899999999999998777667777553

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=82.83  E-value=0.12  Score=55.98  Aligned_cols=29  Identities=17%  Similarity=0.129  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- .+|..||||+...
T Consensus       163 ~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~  192 (573)
T 3uto_A          163 EELGTGAFGVVHRVTERATGNNFAAKFVMT  192 (573)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEec
Confidence            5799999999999975 5688999997644

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=82.71  E-value=0.098  Score=52.59  Aligned_cols=30  Identities=20%  Similarity=0.175  Sum_probs=19.6

Q ss_pred             cceeecccceeeehhhh----hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII----LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~----~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..    .+..||||+....
T Consensus        43 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~   76 (345)
T 2v62_A           43 KKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQE   76 (345)
T ss_dssp             EEC------CEEEEEESSSCGGGCCEEEEEEECC
T ss_pred             eeEeecCCeEEEEEEecCCCCccceEEEEeeecC
Confidence            68999999999999986    6778999887643

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=82.69  E-value=0.11  Score=57.33  Aligned_cols=30  Identities=17%  Similarity=0.263  Sum_probs=23.9

Q ss_pred             cceeecccceeeehhhhh----hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL----SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~----g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+...    +..||||.....
T Consensus       396 ~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~  429 (656)
T 2j0j_A          396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC  429 (656)
T ss_dssp             EEEECCSSCCEEEEEECCSSSCCEEEEEEECSST
T ss_pred             eEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc
Confidence            689999999999998743    347899876543

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=82.60  E-value=0.12  Score=50.23  Aligned_cols=30  Identities=13%  Similarity=0.100  Sum_probs=23.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+.. ++..||||+....
T Consensus        32 ~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~   62 (290)
T 1t4h_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDR   62 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGG
T ss_pred             eeccCCCCeEEEEeEecCCceEEEEEEecch
Confidence            47999999999999764 4457888876543

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=82.44  E-value=0.093  Score=53.19  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-. .|..||||+...
T Consensus        26 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   55 (361)
T 3uc3_A           26 KDIGSGNFGVARLMRDKLTKELVAVKYIER   55 (361)
T ss_dssp             EEESSSTTSSEEEEEETTTCCEEEEEEEES
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEec
Confidence            67999999999999876 677999998754

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=82.35  E-value=0.091  Score=53.39  Aligned_cols=29  Identities=21%  Similarity=0.155  Sum_probs=18.6

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- .+|..||||+...
T Consensus        31 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~   60 (367)
T 1cm8_A           31 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYR   60 (367)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSS
T ss_pred             EEeeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence            6899999999999986 4688999997643

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=82.33  E-value=0.1  Score=55.35  Aligned_cols=30  Identities=13%  Similarity=0.127  Sum_probs=25.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. +|..||||+....
T Consensus        32 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~   62 (484)
T 3nyv_A           32 RVLGKGSFGEVILCKDKITGQECAVKVISKR   62 (484)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETT
T ss_pred             eEEecCCCEEEEEEEECCCCCEEEEEEEEhh
Confidence            68999999999999875 6779999987544

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=82.17  E-value=0.12  Score=51.27  Aligned_cols=29  Identities=21%  Similarity=0.189  Sum_probs=23.8

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-. +|..||+|+...
T Consensus        11 ~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~   40 (321)
T 1tki_A           11 EDLGRGEFGIVHRCVETSSKKTYMAKFVKV   40 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECC
T ss_pred             eEEecCCCeEEEEEEECCCCcEEEEEEEec
Confidence            57999999999999865 467899987653

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=81.79  E-value=0.12  Score=50.79  Aligned_cols=29  Identities=10%  Similarity=0.084  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-. +|..||||+...
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   44 (304)
T 2jam_A           15 EVLGSGAFSEVFLVKQRLTGKLFALKCIKK   44 (304)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred             eeccCCCCceEEEEEECCCCCEEEEEEEec
Confidence            68999999999999865 688999998754

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=81.61  E-value=0.11  Score=54.72  Aligned_cols=29  Identities=14%  Similarity=0.167  Sum_probs=15.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-. +|..||||+...
T Consensus        59 ~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~   88 (458)
T 3rp9_A           59 HLIGTGSYGHVCEAYDKLEKRVVAIKKILR   88 (458)
T ss_dssp             CC-------CEEEEEECC--CEEEEEEECS
T ss_pred             eEeeecCCeEEEEEEECCCCcEEEEEEech
Confidence            68999999999999743 778999997643

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=81.55  E-value=0.13  Score=53.76  Aligned_cols=30  Identities=13%  Similarity=0.127  Sum_probs=22.6

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+ ..+|..||||+....
T Consensus        17 ~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~   47 (444)
T 3soa_A           17 EELGKGAFSVVRRCVKVLAGQEYAAMIINTK   47 (444)
T ss_dssp             EEEEEC--CEEEEEEETTTTEEEEEEEEESC
T ss_pred             EEeccCCCeEEEEEEECCCCcEEEEEEEEcc
Confidence            679999999999996 457889999876543

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=81.55  E-value=0.14  Score=52.49  Aligned_cols=31  Identities=6%  Similarity=0.022  Sum_probs=26.4

Q ss_pred             cceeec--ccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLG--NFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G--~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      ..||+|  +||.||+|+-. +|..||||+.....
T Consensus        31 ~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~   64 (389)
T 3gni_B           31 TVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEA   64 (389)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGG
T ss_pred             ecccCCcCCceEEEEEEEcCCCCEEEEEEecccc
Confidence            689999  99999999976 68899999876543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=81.35  E-value=0.14  Score=53.32  Aligned_cols=29  Identities=14%  Similarity=0.173  Sum_probs=24.3

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- ..|..||||+...
T Consensus        32 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~   61 (432)
T 3n9x_A           32 HLIGRGSYGYVYLAYDKNTEKNVAIKKVNR   61 (432)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeCc
Confidence            6899999999999975 4567899998754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=81.10  E-value=0.13  Score=57.03  Aligned_cols=31  Identities=13%  Similarity=0.221  Sum_probs=25.8

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      .+||+|+||.||+|+.. +|..||||+.....
T Consensus       347 ~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~  378 (674)
T 3pfq_A          347 MVLGKGSFGKVMLSERKGTDELYAVKILKKDV  378 (674)
T ss_dssp             EESSBTTTBCEEEEEESSSCCEEEEEEEEHHH
T ss_pred             EEEccCCCEEEEEEEECCCCcEEEEEEEeccc
Confidence            68999999999999865 46689999876543

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=81.00  E-value=0.14  Score=52.27  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+-. +|.+||||+...
T Consensus        57 ~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~   86 (387)
T 1kob_A           57 EELGSGAFGVVHRCVEKATGRVFVAKFINT   86 (387)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             EEEecCCCEEEEEEEECCCCCEEEEEEecc
Confidence            67999999999999865 577899988654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=80.95  E-value=0.18  Score=48.66  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+. .|..||||+...
T Consensus        27 ~~lg~G~~g~V~~~~~-~~~~vavK~~~~   54 (278)
T 1byg_A           27 QTIGKGEFGDVMLGDY-RGNKVAVKCIKN   54 (278)
T ss_dssp             EEEEECSSCEEEEEEE-TTEEEEEEECCC
T ss_pred             eEEecCCCceEEEEEE-cCCEEEEEEecc
Confidence            6899999999999987 588999998754

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=80.92  E-value=0.14  Score=49.73  Aligned_cols=30  Identities=20%  Similarity=0.168  Sum_probs=17.4

Q ss_pred             cceeecccceeeehhhh--hhh--hHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII--LSA--MVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~--~g~--~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..  +|.  .||||+....
T Consensus        24 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~   57 (291)
T 1u46_A           24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPD   57 (291)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC----
T ss_pred             eeecCCCceeEEEEEeccCCCceeEEEEEEEccC
Confidence            67999999999999864  333  6899987654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=80.34  E-value=0.14  Score=51.92  Aligned_cols=30  Identities=13%  Similarity=0.031  Sum_probs=25.0

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+-. +|..||||+....
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~   65 (362)
T 2bdw_A           35 EELGKGAFSVVRRCVHKTTGLEFAAKIINTK   65 (362)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETT
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEEcc
Confidence            68999999999999864 5779999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	694
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-24
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  102 bits (255), Expect = 1e-24
 Identities = 67/309 (21%), Positives = 128/309 (41%), Gaps = 22/309 (7%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
            L  +   +  L K+      +   L   DL  N +  I+ G F  L +L  L+L    +
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
           + ISP AF  L  L+ L LS+N+LK      L       L  L + ++ I+ +  +VF  
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKE-----LPEKMPKTLQELRVHENEITKVRKSVFNG 122

Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL 220
              +  + L  N L    +     Q +  L  + +++ ++   + +        L  L+L
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHL 178

Query: 221 SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA 280
            GN ++  D + +LK L  L +L L    +S +   +      L+EL +++N L+     
Sbjct: 179 DGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 237

Query: 281 LLSPLESLEHLDMGYSNLQRISRSTF------LKMTSLKTLILSGNKLETLE--SGLFQN 332
           L    + ++ + +  +N+  I  + F       K  S   + L  N ++  E     F+ 
Sbjct: 238 LAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

Query: 333 LTHLSVLEL 341
           +   + ++L
Sbjct: 297 VYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.0 bits (188), Expect = 6e-16
 Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 18/265 (6%)

Query: 17  PGLITINLNANPIQPV-EGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
           P    ++L  N I  + +G F   ++L  L +    +SKI+P  F  L  L +L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 76  LRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLG 135
           L+ +   +   L  L         +T +  S F+ LN +  +EL  N LKS         
Sbjct: 91  LKELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 136 NLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDL 195
            + KL  + +  + I+ +P  +  +   L  L+L  N++  +D A+   + L +L  L L
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASL--KGLNNLAKLGL 202

Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPA 255
           S   +       +  N   LR L+L+ N L      +A      +  + L N  +S + +
Sbjct: 203 SFNSISAV-DNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIGS 259

Query: 256 NTFH------RFTCLQELDISHNPL 274
           N F       +      + +  NP+
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 8e-15
 Identities = 56/315 (17%), Positives = 108/315 (34%), Gaps = 42/315 (13%)

Query: 213 TKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHN 272
                L L  N ++        K L  LH L L N  +S++    F     L+ L +S N
Sbjct: 31  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 273 PLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQN 332
            L +    +   L+ L   +   + +++   +   +M  +  L  +  K   +E+G FQ 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG 148

Query: 333 LTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQI 392
           +  LS + + +  +T + + +       P L EL L GN +  +  ++ +         +
Sbjct: 149 MKKLSYIRIADTNITTIPQGLP------PSLTELHLDGNKITKVDAASLK--------GL 194

Query: 393 WKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSR 452
                  +    ++          P L EL L+ N L  +P G         ++ + L  
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL---ADHKYIQVVYLHN 251

Query: 453 CKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH--IS 510
             I  +  N F      T                            + L +N + +  I 
Sbjct: 252 NNISAIGSNDFCPPGYNTKK---------------------ASYSGVSLFSNPVQYWEIQ 290

Query: 511 PTVLRHNRAITSIKL 525
           P+  R      +++L
Sbjct: 291 PSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 1e-14
 Identities = 56/296 (18%), Positives = 107/296 (36%), Gaps = 30/296 (10%)

Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           +   + GL ++P +          LD+ +N + +        L++L  L +  + + +IS
Sbjct: 15  VQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 71

Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
              F  +  L+ L LS N+L+ L   + + L  L V   +   +T++ ++VF+       
Sbjct: 72  PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---HENEITKVRKSVFNGLNQMIV 128

Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL 422
           +E          +   + +     +       N   +                 P L EL
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI------------PQGLPPSLTEL 176

Query: 423 RLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT 482
            L GN +  +   +L    L+ L  L LS   I  +      NT ++  L+L NN L   
Sbjct: 177 HLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234

Query: 483 SELSFQFLDVLLELESLDLSNNNLTHISPTV------LRHNRAITSIKLVGNPWKC 532
                        ++ + L NNN++ I               + + + L  NP + 
Sbjct: 235 PGGLAD----HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 44/233 (18%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
                L L  NK+  ++ G F+NL +L  L L N  +++++   F        LE L LS
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL---VKLERLYLS 87

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPL 429
            N L  LP+   +                                     +ELR+  N +
Sbjct: 88  KNQLKELPEKMPKTL-----------------------------------QELRVHENEI 112

Query: 430 HVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQF 489
             +            +  L  +  K   +    F   + ++ + +A+ N++   +     
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----- 167

Query: 490 LDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEW 542
             +   L  L L  N +T +    L+    +  + L  N      N +     
Sbjct: 168 -GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 52/252 (20%), Positives = 93/252 (36%), Gaps = 23/252 (9%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
            + + + L GN++  + +  F+   +L++L L++  L R++   F               
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ------- 84

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFH----ENYTYPDLEELRLS 425
                   D +    +R++    +     L  L +    +             L+ L L 
Sbjct: 85  -------LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 426 GNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSEL 485
            N L  LP           L  L L   +I  +P   F    ++  L L  N ++     
Sbjct: 138 DNALQALPDDTFRDLG--NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 486 SFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATR 545
           +F+ L     L +L L  NNL+ +    L   RA+  ++L  NPW CDC    +W W  +
Sbjct: 196 AFRDLG---RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

Query: 546 EKGDIGVLVGST 557
            +G    +  S 
Sbjct: 253 FRGSSSEVPCSL 264

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 61/248 (24%), Positives = 91/248 (36%), Gaps = 9/248 (3%)

Query: 52  LSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNL 111
           L  +          +    L GN +  +    F    +L  L L+   L  I  +AF  L
Sbjct: 23  LQAVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 112 NHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAE 171
             L+ L+LS N     +        LG+L TL L + G+  L   +F     L+ L L +
Sbjct: 80  ALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 172 NELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLS 231
           N L  L   T   ++L +L  L L    +   + E AF     L  L L  N ++     
Sbjct: 139 NALQALPDDTF--RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 232 VALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHL 291
            A + L +L  L L    LS LP         LQ L ++ NP +            L+  
Sbjct: 196 -AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKF 253

Query: 292 DMGYSNLQ 299
               S + 
Sbjct: 254 RGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 22/207 (10%)

Query: 189 HLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
               + L    +   +   +F     L  L+L  N L+  D +               N 
Sbjct: 33  ASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 249 GLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLK 308
            L  +   TFH    L  L +    L +    L   L +L++L +  + LQ +   TF  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 309 MTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD------ 362
           + +L  L L GN++ ++    F+ L  L  L L+   +  ++   F +            
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 363 ---------------LEELRLSGNPLH 374
                          L+ LRL+ NP  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWV 238

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 3e-12
 Identities = 57/260 (21%), Positives = 78/260 (30%), Gaps = 47/260 (18%)

Query: 283 SPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN 342
           S + S   ++    NL  +             L LS N L T         T L+ L L+
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 343 NCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVIL 402
                    T    + T P L  L LS N L  LP   +     T+    +     L + 
Sbjct: 64  RA-----ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 403 FILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNV 462
            +       E Y            N L  LP G L P          L+   +  LP  +
Sbjct: 119 ALRGLGELQELYLKG---------NELKTLPPGLLTPTPKLEKL--SLANNNLTELPAGL 167

Query: 463 FNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITS 522
            N                            L  L++L L  N+L  I P     +  +  
Sbjct: 168 LNG---------------------------LENLDTLLLQENSLYTI-PKGFFGSHLLPF 199

Query: 523 IKLVGNPWKCDCNIADMWEW 542
             L GNPW C+C I     W
Sbjct: 200 AFLHGNPWLCNCEILYFRRW 219

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 46/207 (22%), Positives = 62/207 (29%), Gaps = 13/207 (6%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
           S L +   +  L+ + P    + T L    LS N L         P T L  L L+R  L
Sbjct: 11  SHLEVNCDKRNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
           T            L  L              L+   L  L  LD+  + +++LP      
Sbjct: 68  TK-----LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL 220
              L+ L L  NEL  L          +   SL  +N      L          L TL L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLL 179

Query: 221 SGNPLSAADLSVALKPLTKLHRLSLRN 247
             N  S   +         L    L  
Sbjct: 180 QEN--SLYTIPKGFFGSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 46/209 (22%), Positives = 74/209 (35%), Gaps = 11/209 (5%)

Query: 135 GNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLD 194
             +     ++  +  ++ LP ++  +      L+L+EN L    +AT        L  L+
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKD---TTILHLSENLLYTFSLAT--LMPYTRLTQLN 61

Query: 195 LSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
           L    L     +        L   +     L         + L  L  L +    L+ LP
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-----QTLPALTVLDVSFNRLTSLP 116

Query: 255 ANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKT 314
                    LQEL +  N L      LL+P   LE L +  +NL  +       + +L T
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 315 LILSGNKLETLESGLFQNLTHLSVLELNN 343
           L+L  N L T+  G F     L    L+ 
Sbjct: 177 LLLQENSLYTIPKGFF-GSHLLPFAFLHG 204

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 43/216 (19%), Positives = 71/216 (32%), Gaps = 15/216 (6%)

Query: 108 FDNLNHLKTLELSQNKLKSHIDWTLVLGNLGK-LDTLDLRQSGISNLPDNVFANNTWLRN 166
              +     +   +  L +      +  +L K    L L ++ +           T L  
Sbjct: 6   VSKVASHLEVNCDKRNLTA------LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 167 LNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS 226
           LNL   EL          Q    L  L   +       S           T+        
Sbjct: 60  LNLDRAELTK-------LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 227 AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLE 286
            +    AL+ L +L  L L+   L  LP         L++L +++N L +    LL+ LE
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 287 SLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKL 322
           +L+ L +  ++L  I +  F     L    L GN  
Sbjct: 173 NLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 40/186 (21%), Positives = 64/186 (34%), Gaps = 9/186 (4%)

Query: 40  RSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN 99
           +    L++ E  L   +       T L +L+L      + +  V   L  L  L L+   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 100 LTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFA 159
           L  +                        +     L  LG+L  L L+ + +  LP  +  
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGA---LRGLGELQELYLKGNELKTLPPGLLT 145

Query: 160 NNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLY 219
               L  L+LA N L +L         L +LD+L L    L   + +  F  +  L   +
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLL--NGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAF 201

Query: 220 LSGNPL 225
           L GNP 
Sbjct: 202 LHGNPW 207

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 7e-11
 Identities = 72/360 (20%), Positives = 123/360 (34%), Gaps = 50/360 (13%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
            +  L      +  I+      L  L +++ S N L  I P     LT L  +++N   +
Sbjct: 45  QVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100

Query: 101 TYI-------SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNL 153
             I       + +     N+  T       L +     L    +  +  L    S     
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 154 PDNVFANNTWLRNLNLAENELIDL--DVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
             N   +   L NL   E   I        ++   L +L+SL  +N  +           
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGI 217

Query: 212 ATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
            T L  L L+GN L        L  LT L  L L N  +S L        T L EL +  
Sbjct: 218 LTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 272 NPLID--------------------AFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTS 311
           N + +                       + +S L++L +L + ++N+  IS      +T 
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTK 330

Query: 312 LKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGN 371
           L+ L  + NK+  + S    NLT+++ L   +  ++ L             + +L L+  
Sbjct: 331 LQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTPLANLTR-----ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 72/445 (16%), Positives = 134/445 (30%), Gaps = 81/445 (18%)

Query: 61  TNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120
           T L    K  L      + +      L  +  L  +R  +  I     + LN+L  +  S
Sbjct: 19  TALAEKMKTVLGKT--NVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFS 74

Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
            N+L         L NL KL  + +  + I+++       N     L   +   ID    
Sbjct: 75  NNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 181 TTLGQNLVHLD-SLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK 239
            T    L     ++   +        +             L+                  
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT--------------- 175

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQ 299
                L          +   + T L+ L  ++N + D     +    +L+ L +  + L+
Sbjct: 176 -TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLK 232

Query: 300 RISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYT 359
            I   T   +T+L  L L+ N++  L       LT L+ L+L    ++ +          
Sbjct: 233 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI---------- 278

Query: 360 YPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDL 419
                      +PL  L   T           I    +                    +L
Sbjct: 279 -----------SPLAGLTALTNLELNENQLEDISPISNL------------------KNL 309

Query: 420 EELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNL 479
             L L  N +  +         L++L+ L  +  K+  +      N  NI  L+  +N +
Sbjct: 310 TYLTLYFNNISDISP----VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQI 363

Query: 480 SMTSELSFQFLDVLLELESLDLSNN 504
           S  + L+      L  +  L L++ 
Sbjct: 364 SDLTPLAN-----LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 4e-10
 Identities = 70/427 (16%), Positives = 144/427 (33%), Gaps = 69/427 (16%)

Query: 109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLN 168
             L       L +  +      T+   +L ++ TL   + GI ++    + NN  L  +N
Sbjct: 19  TALAEKMKTVLGKTNVTD----TVSQTDLDQVTTLQADRLGIKSIDGVEYLNN--LTQIN 72

Query: 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
            + N+L D+     L + +  L + +            +          +       +  
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELD-------ISHNPLIDAFTAL 281
           +L+        +  +S  +   S    +  ++ T L+ L        +  +    +  ++
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 282 LSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLEL 341
           L+ L +LE L    + +  I+      +T+L  L L+GN+L+ + +    +LT+L+ L+L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT--LASLTNLTDLDL 248

Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
            N  ++ L             L EL+L  N +  +       ++  +     +  D    
Sbjct: 249 ANNQISNLAPLSGLTK-----LTELKLGANQISNISPLAGLTALTNLELNENQLEDISP- 302

Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
                                                   L  L  L L    I  + P 
Sbjct: 303 -------------------------------------ISNLKNLTYLTLYFNNISDISP- 324

Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAIT 521
             ++   +  L  ANN +S  S L+      L  +  L   +N ++ ++P  L +   IT
Sbjct: 325 -VSSLTKLQRLFFANNKVSDVSSLAN-----LTNINWLSAGHNQISDLTP--LANLTRIT 376

Query: 522 SIKLVGN 528
            + L   
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 3e-07
 Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 31/177 (17%)

Query: 16  NPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNP 75
              L  ++LN N ++ + G      +L  L +    +S + P   + LT L +L L  N 
Sbjct: 218 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 76  LRIIEP--------------------GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLK 115
           +  I P                         L +L YL L   N++ ISP    +L  L+
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 116 TLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAEN 172
            L  + NK+ S +     L NL  ++ L    + IS+L     AN T +  L L + 
Sbjct: 333 RLFFANNKV-SDVSS---LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 38/233 (16%), Positives = 82/233 (35%), Gaps = 6/233 (2%)

Query: 21  TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIE 80
           T++L    + P     L+++ ++        + +   + F+    +  +DLS + + +  
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 81  -PGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL---KSHIDWTLVLGN 136
             G+    + L+ L L    L+    +     ++L  L LS        +          
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 137 LGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAE-NELIDLDVATTLGQNLVHLDSLDL 195
           L +L+          ++   V   +  +  LNL+   + +     +TL +   +L  LDL
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 196 SNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNC 248
           S+  +        F     L+ L LS       +  + L  +  L  L +   
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 40/273 (14%), Positives = 87/273 (31%), Gaps = 10/273 (3%)

Query: 216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
           +TL L+G  L        L       R              +  R   +Q +D+S++ + 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR---VQHMDLSNSVIE 59

Query: 276 D-AFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLT 334
                 +LS    L++L +    L     +T  K ++L  L LSG    +  +      +
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 335 HLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK 394
              + ELN        E        +      +L+ +        +   ++      +  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCK 454
                 ++       F E +    L+ L LS     ++P   L   ++  L++L +    
Sbjct: 180 LDLSDSVML--KNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGIV 236

Query: 455 IDYLPPNVFNNTRNITSLNLANNNLSMTSELSF 487
            D     +      +  L +  ++ +  +  + 
Sbjct: 237 PDGTLQLLK---EALPHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 163 WLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG 222
           W   L+L    L        L Q ++   +       +  PL+E    +  +++ + LS 
Sbjct: 2   WQT-LDLTGKNLHPDVTGRLLSQGVI---AFRCPRSFMDQPLAE--HFSPFRVQHMDLSN 55

Query: 223 NPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLI 275
           + +  + L   L   +KL  LSL    LS    NT  + + L  L++S     
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 108

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 56/285 (19%), Positives = 98/285 (34%), Gaps = 29/285 (10%)

Query: 68  KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLN--HLKTLELSQNKLK 125
            LDL+G  L    P V   L S   +   RC  +++     ++ +   ++ ++LS + + 
Sbjct: 4   TLDLTGKNLH---PDVTGRLLSQGVIAF-RCPRSFMDQPLAEHFSPFRVQHMDLSNSVI- 58

Query: 126 SHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQ 185
                  +L    KL  L L    +S+   N  A N+ L  LNL+           TL  
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 186 NLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSL 245
           +   LD L+LS C           V         L                    +    
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL--------------------NLSGY 158

Query: 246 RNCGLSRLPANTFHRFTCLQELDISHNPLI-DAFTALLSPLESLEHLDMGY-SNLQRISR 303
           R        +    R   L  LD+S + ++ +        L  L+HL +    ++   + 
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218

Query: 304 STFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR 348
               ++ +LKTL + G   +     L + L HL +   +   + R
Sbjct: 219 LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIAR 263

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 55.3 bits (131), Expect = 1e-08
 Identities = 36/317 (11%), Positives = 82/317 (25%), Gaps = 19/317 (5%)

Query: 207 DAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTC 263
              +    ++ + LSGN +    A  LS  +     L      +    R+          
Sbjct: 25  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 84

Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
           L +  +    L     +  +   + +   + + +        +L    L     +     
Sbjct: 85  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 144

Query: 324 TLESGLFQNLTHLS----------VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPL 373
             E  + +   +             LE  +              +T   ++         
Sbjct: 145 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 204

Query: 374 HVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLP 433
           H+L +         +       F  L    +        N     L +  LS      + 
Sbjct: 205 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 264

Query: 434 TGNLLPPQLSRLRSLDLSRCKID-----YLPPNVFNNTRNITSLNLANNNLSMTSELSFQ 488
                  +   L++L L   +I+      L   +     ++  L L  N  S   ++  +
Sbjct: 265 D-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 323

Query: 489 FLDVLLELESLDLSNNN 505
             +V       +L   +
Sbjct: 324 IREVFSTRGRGELDELD 340

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 3e-08
 Identities = 24/205 (11%), Positives = 59/205 (28%)

Query: 140 LDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCH 199
              L    + +  +    F+    L  + +++N+++++  A          +       +
Sbjct: 31  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90

Query: 200 LKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFH 259
           L     E           L  +       D+         L  +       +    +   
Sbjct: 91  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150

Query: 260 RFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSG 319
                  L ++ N + +      +  +  E      +NL+ +    F   +    L +S 
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210

Query: 320 NKLETLESGLFQNLTHLSVLELNNC 344
            ++ +L S   +NL  L      N 
Sbjct: 211 TRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 7e-06
 Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 29/237 (12%)

Query: 41  SLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL 100
           S      QE  +++I      N   L         LR+I+ G F     LE + +++ ++
Sbjct: 9   SNRVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFAN 160
             +  +   +          +              NL  L  L +  +GI +LPD    +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLS-----------------------N 197
           +     L++ +N  I      +          L L+                       +
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 198 CHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
            +    L  D F  A+    L +S   + +   S  L+ L KL   S  N  L +LP
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLP-SYGLENLKKLRARSTYN--LKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 28/217 (12%), Positives = 59/217 (27%), Gaps = 20/217 (9%)

Query: 310 TSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLS 369
            +   L     KL  ++ G F     L  +E++   +  + E     N        +  +
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 370 GNPLHVLPDSTKQYSMRTIPTQIWKNFD---------------FLVILFILNETVFHENY 414
            N L++ P++ +                                 +   I   T+   ++
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 415 TYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL 474
                E + L  N   +    N                  ++ LP +VF+       L++
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISP 511
           +   +        + L  L        S  NL  +  
Sbjct: 209 SRTRIHSLPSYGLENLKKLRA-----RSTYNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 2/64 (3%)

Query: 42  LLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLT 101
                     L ++    F   +    LD+S   +  +     + L  L        NL 
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLK 236

Query: 102 YISP 105
            +  
Sbjct: 237 KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 7/237 (2%)

Query: 65  TLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKL 124
           +        + +  I   +     +   L      L  I   AF     L+ +E+SQN +
Sbjct: 9   SNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 125 KSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLG 184
              I+  +        +    + + +  +    F N   L+ L ++   +          
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKI 124

Query: 185 QNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLS 244
            +L  +      N ++           + +   L+L+ N +                   
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-QLDELNL 183

Query: 245 LRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI 301
             N  L  LP + FH  +    LDIS   +    +  L  L+ L        NL+++
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 29/235 (12%), Positives = 69/235 (29%), Gaps = 12/235 (5%)

Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
              +   ++ +P++         EL      L        S    LE +++  +++  + 
Sbjct: 13  FLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
            +                KL  +      NL +++     N    +            PD
Sbjct: 70  EADVFSNL---------PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 120

Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL 422
           + ++      L  + D+   +++             ++ L        H         + 
Sbjct: 121 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE 180

Query: 423 RLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
               +  ++    N +    S    LD+SR +I  LP     N + + + +  N 
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 55/349 (15%), Positives = 92/349 (26%), Gaps = 20/349 (5%)

Query: 161 NTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYL 220
           + W RN      E  ++ V+            L+L+N  L   L E        L +L  
Sbjct: 11  SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE----LPPHLESLVA 65

Query: 221 SGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTA 280
           S N L+  +L    + L  L   +     LS LP    +      +L+        +F  
Sbjct: 66  SCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLK 123

Query: 281 LLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLE 340
           ++    +                +   ++  L  L                       L 
Sbjct: 124 IIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS 183

Query: 341 LNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLV 400
           L +            E    P L  +    N L  LPD         +      +   L 
Sbjct: 184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELP 243

Query: 401 ILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPP 460
                 +   +      +L       N                 L  L++S  K+  LP 
Sbjct: 244 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLIELPA 301

Query: 461 NVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHI 509
                   +  L  + N+L+   EL          L+ L +  N L   
Sbjct: 302 LP----PRLERLIASFNHLAEVPEL-------PQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 55/342 (16%), Positives = 94/342 (27%), Gaps = 30/342 (8%)

Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGN 223
              L L    L      ++L +   HL+SL  S   L   L E        L++L +  N
Sbjct: 40  AHELELNNLGL------SSLPELPPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNN 88

Query: 224 PLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLS 283
            L A      L     +    L      +  +           L    +           
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 284 PLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL--SVLEL 341
             +  E  ++          +    +  L  L LS   +    + L +         L  
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 342 NNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI 401
                  L                     +   +    T       I + + +    L  
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN 461
           L   +  +       P LEEL +S N L  LP          RL  L  S   +  +P  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL------PPRLERLIASFNHLAEVPEL 322

Query: 462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
                +N+  L++  N L        +F D+   +E L +++
Sbjct: 323 P----QNLKQLHVEYNPLR-------EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 6e-07
 Identities = 54/322 (16%), Positives = 93/322 (28%), Gaps = 27/322 (8%)

Query: 66  LNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLK 125
            ++L+L+   L  +     +    LE L+ +  +LT +          LK+L +  N LK
Sbjct: 40  AHELELNNLGLSSLP----ELPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLK 91

Query: 126 SHIDWT--LVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTL 183
           +  D    L    +       L +   S+    +  +N  L+ L      L  +      
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 184 GQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRL 243
            + L  L +L           S     +        ++GN +      +   P       
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 244 SLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG------YSN 297
                        +                L  + T L         L          + 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 298 LQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHEN 357
                RS      SL+ L +S NKL  L +        L  L  +   L  + E      
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPELP---- 323

Query: 358 YTYPDLEELRLSGNPLHVLPDS 379
               +L++L +  NPL   PD 
Sbjct: 324 ---QNLKQLHVEYNPLREFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 46  YMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISP 105
                  S           +L +L++S N L  +          LE L+ +  +L  +  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE 321

Query: 106 SAFDNLNHLKTLELSQNKLKSHIDWTLVLGNL 137
                  +LK L +  N L+   D    + +L
Sbjct: 322 L----PQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 14/99 (14%)

Query: 71  LSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDW 130
              N        + D   SLE L ++   L  +          L+ L  S N L      
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAE---- 318

Query: 131 TLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
             V      L  L +  + +   PD        + +L +
Sbjct: 319 --VPELPQNLKQLHVEYNPLREFPDIP----ESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 57/314 (18%), Positives = 99/314 (31%), Gaps = 38/314 (12%)

Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLE-------SLEH 290
            + H L L N GLS LP         L+ L  S N L +    L   L+       +L+ 
Sbjct: 38  RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKA 92

Query: 291 LDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLS------------- 337
           L      L+ +  S        +    S  K+  +++   + L  L              
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 338 --VLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKN 395
             + EL N           +     PDL     S    + + +   +       T I+ +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 396 FDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKI 455
            + L  L  L  ++   N     L +L      L  L     +   LS L          
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 456 DYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLR 515
                ++ +   ++  LN++NN L        +   +   LE L  S N+L  +      
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-------ELPALPPRLERLIASFNHLAEVPELP-- 323

Query: 516 HNRAITSIKLVGNP 529
             + +  + +  NP
Sbjct: 324 --QNLKQLHVEYNP 335

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 3e-07
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 215 LRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLS----RLPANTFHRFTCLQELDIS 270
           +++L +    LS A  +  L  L +   + L +CGL+    +  ++       L EL++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 271 HNPLIDA-----FTALLSPLESLEHLDMGYSN 297
            N L D         L +P   ++ L +    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 1e-06
 Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 7/131 (5%)

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLP----PNVFNNTRNITSLN 473
           D++ L +    L       LLP  L + + + L  C +         +       +  LN
Sbjct: 3   DIQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 474 LANNNLSMT--SELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWK 531
           L +N L       +         +++ L L N  LT     VL             +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 532 CDCNIADMWEW 542
                A +   
Sbjct: 122 NLLGDAGLQLL 132

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 264 LQELDISHNPLIDA-FTALLSPLESLEHLDMGYSNLQRIS----RSTFLKMTSLKTLILS 318
           +Q LDI    L DA +  LL  L+  + + +    L         S      +L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 319 GNKL-----ETLESGLFQNLTHLSVLELNNCG 345
            N+L       +  GL      +  L L NC 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 164 LRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSED---AFVNATKLRTLYL 220
           +++L++   EL D   A  L   L     + L +C L     +D   A      L  L L
Sbjct: 4   IQSLDIQCEELSDARWAE-LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 221 SGNPLS---AADLSVALK-PLTKLHRLSLRNCG 249
             N L       +   L+ P  K+ +LSL+NC 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 110 NLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLP----DNVFANNTWLR 165
           +L+ +++L++   +L S   W  +L  L +   + L   G++        +    N  L 
Sbjct: 1   SLD-IQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 58

Query: 166 NLNLAENELIDLDV---ATTLGQNLVHLDSLDLSNCH 199
            LNL  NEL D+ V      L      +  L L NC 
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-05
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 188 VHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLS 244
           + + SLD+    L      +      + + + L    L+     D+S AL+    L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 245 LRNC-----GLSRLPANTFHRFTCLQELDISHN 272
           LR+      G+  +          +Q+L + + 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 26/109 (23%)

Query: 66  LNKLDLSGNPLRIIE-PGVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLKTLELS 120
           +  LD+    L       +   L   + + L+ C LT        SA      L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNL 169
            N+L                        G+  +   +   +  ++ L+L
Sbjct: 64  SNELGD---------------------VGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 185 QNLVHLDSLDLSNCHLKGPLSE---DAFVNATKLRTLYLSGNPLS---AADLSVALK-PL 237
           Q    L  L L++C +            +    LR L LS N L       L  +++ P 
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 238 TKLHRLSLRNCGLS 251
             L +L L +   S
Sbjct: 426 CLLEQLVLYDIYWS 439

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 443 SRLRSLDLSRCKIDYLP----PNVFNNTRNITSLNLANNNLSMT--SELSFQFLDVLLEL 496
           S LR L L+ C +                ++  L+L+NN L      +L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 497 ESLDLSNNNLTHISPTVLR 515
           E L L +   +      L+
Sbjct: 429 EQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 209 FVNATKLRTLYLSGNPLS---AADLSVALKPLTKLHRLSLRNC-----GLSRLPANTFHR 260
               + LR L+L+   +S    + L+  L     L  L L N      G+ +L  +    
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 261 FTCLQELDISHNPLIDAFTALLSPLE 286
              L++L +      +     L  LE
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 13/106 (12%)

Query: 247 NCGLSRLPANTFHRFTCLQELDISHNPLID----AFTALLSPLESLEHLDMGYSNL---- 298
           + G+  L        + L+ L ++   + D    +  A L    SL  LD+  + L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 299 -QRISRSTFLKMTSLKTLILSGNKL----ETLESGLFQNLTHLSVL 339
             ++  S       L+ L+L         E     L ++   L V+
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 44/220 (20%), Positives = 73/220 (33%), Gaps = 12/220 (5%)

Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
           L +   +  G SN+      T   +  + TL   G  + T+E    Q L +L  LEL + 
Sbjct: 18  LANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73

Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
            +T L         T  +L    L          S K   + +           L  L +
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 405 LNETVFHENYTYP-DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVF 463
           L   +       P          +  +   +       LS+L +L     KI  + P   
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 464 NNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSN 503
            +  N+  ++L NN +S  S L+         L  + L+N
Sbjct: 192 ASLPNLIEVHLKNNQISDVSPLAN-----TSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 24/235 (10%)

Query: 109 DNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLN 168
             L +   +   ++ +      T+   +L  + TL    +G++ +          L  L 
Sbjct: 16  PALANAIKIAAGKSNVTD----TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69

Query: 169 LAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAA 228
           L +N++ DL     L +                   +  A      ++TL L+   ++  
Sbjct: 70  LKDNQITDLAPLKNLTKITEL-------ELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 229 DLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESL 288
                L  L  L+    +   +S L   T  ++  +    +S           L+ L  L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-------LANLSKL 175

Query: 289 EHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNN 343
             L    + +  IS      + +L  + L  N++  +      N ++L ++ L N
Sbjct: 176 TTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 34/203 (16%), Positives = 62/203 (30%), Gaps = 14/203 (6%)

Query: 313 KTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNP 372
             + ++  K    ++    +L  ++ L     G+T +    +  N     L  L L  N 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN-----LIGLELKDNQ 74

Query: 373 LHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVL 432
           +  L        +  +        +   I  + +        T           + L VL
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 433 PTGNLLPPQLSRLRSLDL----SRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQ 488
                    +S L  L      S             N   +T+L   +N +S  S L+  
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS- 193

Query: 489 FLDVLLELESLDLSNNNLTHISP 511
               L  L  + L NN ++ +SP
Sbjct: 194 ----LPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 24/232 (10%)

Query: 62  NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQ 121
            L    K+    +   + +      L  +  L      +T I       LN+L  LEL  
Sbjct: 17  ALANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 122 NKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVAT 181
           N++        +        + +  ++  +                      L  L    
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 182 TLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLH 241
            L  +L  + ++                   + L  L                  L+KL 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL----------------ANLSKLT 176

Query: 242 RLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM 293
            L   +  +S +          L E+ + +N + D   + L+   +L  + +
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 36/212 (16%), Positives = 60/212 (28%), Gaps = 22/212 (10%)

Query: 60  FTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLEL 119
             +L  +  L   G  +  IE      L +L  L L    +T ++P           L  
Sbjct: 37  QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94

Query: 120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDV 179
           +  K  S I                  QS  +    +    +            L     
Sbjct: 95  NPLKNVSAIAG---------------LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 180 ATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTK 239
             T    L  L +L   +             N +KL TL    N +S       L  L  
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---PLASLPN 196

Query: 240 LHRLSLRNCGLSRLPANTFHRFTCLQELDISH 271
           L  + L+N  +S +        + L  + +++
Sbjct: 197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 46  YMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISP 105
           Y+        +     NL+ L  L    N +  I P     L +L  + L    ++ +SP
Sbjct: 155 YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

Query: 106 SAFDNLNHLKTLELS 120
               N ++L  + L+
Sbjct: 213 --LANTSNLFIVTLT 225

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRIS 302
           L L +  L+ L      +   +  LD+SHN L     AL + L  LE L    + L+ + 
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVD 59

Query: 303 RSTFLKMTSLKTLILSGNKLETLES-GLFQNLTHLSVLELNNCGLTRLNETVFHENYTYP 361
                 +  L+ L+L  N+L+   +     +   L +L L    L +            P
Sbjct: 60  --GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 362 DLEEL 366
            +  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 8/113 (7%)

Query: 142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLK 201
            L L    ++ L          + +L+L+ N L        L   L  L  L++      
Sbjct: 2   VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRL------RALPPALAALRCLEVLQASDN 53

Query: 202 GPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLP 254
              + D   N  +L+ L L  N L  +     L    +L  L+L+   L +  
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 33/135 (24%)

Query: 92  YLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS 151
            L L   +LT       + L  +  L+LS N+L++       L  L  L+ L    + + 
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA---LAALRCLEVLQASDNALE 56

Query: 152 NLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVN 211
           N+                                       L L N  L+   +    V+
Sbjct: 57  NVDGVANLPRLQ----------------------------ELLLCNNRLQQSAAIQPLVS 88

Query: 212 ATKLRTLYLSGNPLS 226
             +L  L L GN L 
Sbjct: 89  CPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
            L++    L+ +       L  +  LDLS N LR + P     L  LE L  +   L  +
Sbjct: 2   VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 104 SPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ---SGISNLPDNVFAN 160
                 NL  L+ L L  N+L+        L +  +L  L+L+         + + +   
Sbjct: 59  DG--VANLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 161 NTWLRNL 167
              + ++
Sbjct: 116 LPSVSSI 122

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 3/122 (2%)

Query: 57  PQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
               +     ++  L    LR               L         +     +N+  L +
Sbjct: 13  KLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATL-RIIEENIPELLS 69

Query: 117 LELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID 176
           L LS N+L    D + ++     L  L+L  + + +  +        L  L L  N L D
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129

Query: 177 LD 178
             
Sbjct: 130 TF 131

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 105 PSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWL 164
                         L    L+S  D    L        L+ R S  + L   +  N   L
Sbjct: 13  KLIMSKRYDGSQQALDLKGLRSDPD----LVAQNIDVVLNRRSSMAATLR-IIEENIPEL 67

Query: 165 RNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNP 224
            +LNL+ N L  LD  +++ Q   +L  L+LS   LK    E   +   KL  L+L GN 
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNS 126

Query: 225 LS 226
           LS
Sbjct: 127 LS 128

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 9e-04
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 6/117 (5%)

Query: 418 DLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN 477
           D  +  L    L   P  +L+    +    L+            +  N   + SLNL+NN
Sbjct: 21  DGSQQALDLKGLRSDP--DLV--AQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNN 75

Query: 478 NLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDC 534
            L    ++S         L+ L+LS N L             +  + L GN      
Sbjct: 76  RLYRLDDMSSIVQK-APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 15/143 (10%)

Query: 362 DLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEE 421
           D  +  L    L   PD   Q                L     +  T+       P+L  
Sbjct: 21  DGSQQALDLKGLRSDPDLVAQ-----------NIDVVLNRRSSMAATLRIIEENIPELLS 69

Query: 422 LRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSM 481
           L LS N L+ L   + +  +   L+ L+LS  ++             +  L L  N+LS 
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129

Query: 482 TSELSFQFLDVLLE----LESLD 500
           T      ++  + E    L  LD
Sbjct: 130 TFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 264 LQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLE 323
            Q LD+            L        L+   S++    R     +  L +L LS N+L 
Sbjct: 24  QQALDLKGLRSDPD----LVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRLY 78

Query: 324 TLE--SGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK 381
            L+  S + Q   +L +L L+   L    E    +      LEEL L GN L        
Sbjct: 79  RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG---LKLEELWLDGNSLSDTFRDQS 135

Query: 382 QY 383
            Y
Sbjct: 136 TY 137

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 13/196 (6%)

Query: 285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC 344
                  ++   ++        L   S+  +I + + +++++    Q L +++ L LN  
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFI 404
            LT   +     N        L  +           K+    ++      + + LV L  
Sbjct: 79  KLT---DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 405 LNETVFHENYTYPDLEELRLSGNPLHVLPTGNL--LPP--QLSRLRSLDLSRCKIDYLPP 460
           L       N         RL+      L    +  + P   L++L++L LS+  I  L  
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 195

Query: 461 NVFNNTRNITSLNLAN 476
                 +N+  L L +
Sbjct: 196 --LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 39/203 (19%), Positives = 63/203 (31%), Gaps = 25/203 (12%)

Query: 154 PDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNAT 213
            D+ FA        NL +  + D          L  +D +  +N  +K   S        
Sbjct: 19  SDDAFAE---TIKDNLKKKSVTDA----VTQNELNSIDQIIANNSDIK---SVQGIQYLP 68

Query: 214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFT----------- 262
            +  L+L+GN L+       LK L  L     +   LS L      +             
Sbjct: 69  NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 263 --CLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGN 320
                    S     +  T +       +   +   + Q         +T L+ L LS N
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 321 KLETLESGLFQNLTHLSVLELNN 343
            +  L +     L +L VLEL +
Sbjct: 189 HISDLRA--LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 39/187 (20%), Positives = 64/187 (34%), Gaps = 20/187 (10%)

Query: 61  TNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELS 120
             L +++++  + + ++ ++      L ++  L LN   LT I P    NL +L  L L 
Sbjct: 43  NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98

Query: 121 QNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA 180
           +NK+K       +          +        +      +     N       L  L   
Sbjct: 99  ENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL 158

Query: 181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKL 240
            TL      +  +                   TKL+ LYLS N +S  DL  AL  L  L
Sbjct: 159 DTLSLEDNQISDIV-------------PLAGLTKLQNLYLSKNHIS--DLR-ALAGLKNL 202

Query: 241 HRLSLRN 247
             L L +
Sbjct: 203 DVLELFS 209

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 46/265 (17%), Positives = 79/265 (29%), Gaps = 11/265 (4%)

Query: 61  TNLTTLNKLDLSGNPLRIIE--PGVFDPLTSLEYLMLNRC-NLTYISPSAFDNLNHLKTL 117
           T    +N LDLSG  L      P     L  L +L +    NL    P A   L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 118 ELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDL 177
            ++   +   I   L    +  L TLD   + +S       ++   L  +    N +   
Sbjct: 107 YITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-- 162

Query: 178 DVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPL 237
                +  +      L  S    +  L+         L   ++  +       +  L   
Sbjct: 163 ---GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 238 TKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSN 297
            K  +                     L  LD+ +N +       L+ L+ L  L++ ++N
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 298 LQRISRSTFLKMTSLKTLILSGNKL 322
           L          +        + NK 
Sbjct: 280 LCG-EIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 1/81 (1%)

Query: 44  YLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYI 103
                       +         LN LDL  N +    P     L  L  L ++  NL   
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 104 SPSAFDNLNHLKTLELSQNKL 124
            P    NL        + NK 
Sbjct: 284 IPQ-GGNLQRFDVSAYANNKC 303

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 18/151 (11%), Positives = 43/151 (28%), Gaps = 14/151 (9%)

Query: 303 RSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD 362
            + +      + L L G K+  +E  L   L     ++ ++  + +L+            
Sbjct: 11  AAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLL 69

Query: 363 LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL 422
           +   R+                              L    ++         +   L  L
Sbjct: 70  VNNNRICRIGEG------------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117

Query: 423 RLSGNPLHVLPTGNL-LPPQLSRLRSLDLSR 452
            +  NP+       L +  ++ ++R LD  +
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 5/150 (3%)

Query: 36  FLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLML 95
           +  A     L ++   +  I       L   + +D S N +R ++   F  L  L+ L++
Sbjct: 14  YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 70

Query: 96  NRCNLTYISPSAFDNLNHLKTLELSQNKLKS--HIDWTLVLGNLGKLDTLDLRQSGISNL 153
           N   +  I       L  L  L L+ N L     +D    L +L  L  L    +   + 
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130

Query: 154 PDNVFANNTWLRNLNLAENELIDLDVATTL 183
              V      +R L+  + +L +   A  +
Sbjct: 131 RLYVIYKVPQVRVLDFQKVKLKERQEAEKM 160

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 6/132 (4%)

Query: 419 LEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNN 478
              LR + +          LP   +       ++  + +L          + +L +  + 
Sbjct: 10  SSGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 479 LSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIAD 538
           L   +  +F F      L  L+LS N L  +S   +    ++  + L GNP  C C +  
Sbjct: 68  LRFVAPDAFHFTP---RLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPLHCSCALRW 123

Query: 539 MWEWATREKGDI 550
           +  W     G +
Sbjct: 124 LQRWEEEGLGGV 135

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 20/171 (11%)

Query: 298 LQRISRSTFLKMTSLKTLILSGN--KLETLESGLFQNLTHLSVLELNNC---------GL 346
           ++       +  T  + + L G    +E +++ L   L     L L+           G+
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISSLSGM 69

Query: 347 TRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILN 406
             L       N          ++     +     +  S+  I   +     ++    I N
Sbjct: 70  ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN 129

Query: 407 ETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQ--------LSRLRSLD 449
                +      LE+L L+GNPL+     N    +        L  L+ LD
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 24/97 (24%), Positives = 45/97 (46%)

Query: 20  ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII 79
           + +N N       +G F     L+ L ++   L+ I P  F   + + +L L  N ++ I
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93

Query: 80  EPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKT 116
              +F  L  L+ L L    ++ + P +F++LN L +
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	694
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.76
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	96.37
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	96.36
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	96.22
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	96.2
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	96.15
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	96.14
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	96.12
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	96.1
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	96.09
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	96.02
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	95.84
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	95.69
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	95.67
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	95.66
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	95.66
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	95.65
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	95.64
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	95.6
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	95.51
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	95.47
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	95.43
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	95.31
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	95.27
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	95.25
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	95.24
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	95.21
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	95.05
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	95.04
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	95.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	94.98
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	94.95
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	94.93
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	94.9
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	94.86
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	94.83
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	94.82
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	94.81
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	94.79
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	94.77
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	94.77
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	94.73
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	94.58
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	94.58
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	94.55
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	94.45
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	94.43
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	94.36
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	94.21
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	94.21
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	94.06
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	94.06
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	94.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	93.9
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	93.9
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	93.82
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	93.43
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	93.36
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	93.32
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	93.23
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	93.12
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	92.66

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.6e-27  Score=248.00  Aligned_cols=342  Identities=24%  Similarity=0.344  Sum_probs=183.4

Q ss_pred             CCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCC
Q psy3329          62 NLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLD  141 (694)
Q Consensus        62 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  141 (694)
                      .+.+|++|+++++.++.+.  .+..+++|++|++++|+++++++  ++++++|++|++++|.+..+.    .++++++|+
T Consensus        42 ~l~~l~~L~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~----~l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT----PLANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCC
T ss_pred             HhCCCCEEECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc----ccccccccc
Confidence            4455666666666665542  25556666666666666666532  666666666666666665432    255666666


Q ss_pred             EEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcC
Q psy3329         142 TLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLS  221 (694)
Q Consensus       142 ~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  221 (694)
                      .|+++++.++.+..  ......+..+....+.+.........  ...............      ..+...+........
T Consensus       114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  183 (384)
T d2omza2         114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGL--TSLQQLSFGNQVTDL------KPLANLTTLERLDIS  183 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTC--TTCSEEEEEESCCCC------GGGTTCTTCCEEECC
T ss_pred             cccccccccccccc--cccccccccccccccccccccccccc--ccccccccccccchh------hhhcccccccccccc
Confidence            66666666555443  22333444444444433322211110  000111111110000      112222223333333


Q ss_pred             CCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCccc
Q psy3329         222 GNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRI  301 (694)
Q Consensus       222 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  301 (694)
                      .+.....                           ..+..+++++.+++++|.+.+..+  +...++|++|++++|.++.+
T Consensus       184 ~~~~~~~---------------------------~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~  234 (384)
T d2omza2         184 SNKVSDI---------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI  234 (384)
T ss_dssp             SSCCCCC---------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             ccccccc---------------------------cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc
Confidence            3222211                           123344444455555544444332  22334555555555555544


Q ss_pred             ChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCccc
Q psy3329         302 SRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTK  381 (694)
Q Consensus       302 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  381 (694)
                      .  .+..+++|+.|++++|.++++.+  +..+++|+.|++++|+++++++  +.   .++.++.++++.|.++.++.   
T Consensus       235 ~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~---~~~~l~~l~~~~n~l~~~~~---  302 (384)
T d2omza2         235 G--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA---GLTALTNLELNENQLEDISP---  302 (384)
T ss_dssp             G--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT---TCTTCSEEECCSSCCSCCGG---
T ss_pred             c--hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--cc---cccccccccccccccccccc---
Confidence            2  34455566666666665555443  4555666666666666555443  11   45566666666666543221   


Q ss_pred             ccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCC
Q psy3329         382 QYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPN  461 (694)
Q Consensus       382 ~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  461 (694)
                                                  +..   +++++.|++++|.++++.+  +  ..+++|++|++++|+|++++  
T Consensus       303 ----------------------------~~~---~~~l~~L~ls~n~l~~l~~--l--~~l~~L~~L~L~~n~l~~l~--  345 (384)
T d2omza2         303 ----------------------------ISN---LKNLTYLTLYFNNISDISP--V--SSLTKLQRLFFANNKVSDVS--  345 (384)
T ss_dssp             ----------------------------GGG---CTTCSEEECCSSCCSCCGG--G--GGCTTCCEEECCSSCCCCCG--
T ss_pred             ----------------------------cch---hcccCeEECCCCCCCCCcc--c--ccCCCCCEEECCCCCCCCCh--
Confidence                                        111   6677777888887777653  3  67788888888888888764  


Q ss_pred             CCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCC
Q psy3329         462 VFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNN  504 (694)
Q Consensus       462 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N  504 (694)
                      .+.++++|++|++++|++++++|  +   .++++|+.|+|++|
T Consensus       346 ~l~~l~~L~~L~l~~N~l~~l~~--l---~~l~~L~~L~L~~N  383 (384)
T d2omza2         346 SLANLTNINWLSAGHNQISDLTP--L---ANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCGG--G---TTCTTCSEEECCCE
T ss_pred             hHcCCCCCCEEECCCCcCCCChh--h---ccCCCCCEeeCCCC
Confidence            36788888888888888887765  4   77888888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=3.2e-27  Score=245.63  Aligned_cols=356  Identities=25%  Similarity=0.346  Sum_probs=236.4

Q ss_pred             ECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCc
Q psy3329          23 NLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTY  102 (694)
Q Consensus        23 ~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  102 (694)
                      .+..+.++... ....+.+|++|++++++|+.+  ..+..+++|++|++++|+++.+++  ++++++|++|++++|.+.+
T Consensus        28 ~l~~~~~~~~~-~~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          28 VLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             HTTCSSTTSEE-CHHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             HhCCCCCCCcc-CHHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccc
Confidence            45555665432 123567899999999988876  347889999999999999998865  8889999999999999988


Q ss_pred             cChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchhhh
Q psy3329         103 ISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVATT  182 (694)
Q Consensus       103 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  182 (694)
                      +.  .+.++++|+.|+++++.+.....    ......+..+....+.+..+.........................    
T Consensus       103 i~--~l~~l~~L~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  172 (384)
T d2omza2         103 IT--PLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA----  172 (384)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGT----
T ss_pred             cc--ccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccchhhhhc----
Confidence            74  38889999999999998876443    344567777777777666555433333333333322222221110    


Q ss_pred             cccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCC
Q psy3329         183 LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFT  262 (694)
Q Consensus       183 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~  262 (694)
                         ............+.. ..  ...+..+++++.+++++|.++....   ...+++|++|++++|.++.++  .+..++
T Consensus       173 ---~~~~~~~~~~~~~~~-~~--~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~~--~l~~l~  241 (384)
T d2omza2         173 ---NLTTLERLDISSNKV-SD--ISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG--TLASLT  241 (384)
T ss_dssp             ---TCTTCCEEECCSSCC-CC--CGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG--GGGGCT
T ss_pred             ---ccccccccccccccc-cc--ccccccccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCcc--hhhccc
Confidence               233444455555543 21  2346788899999999998877653   255678888888888888764  466777


Q ss_pred             CccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCC
Q psy3329         263 CLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELN  342 (694)
Q Consensus       263 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  342 (694)
                      +|+.|++++|.+.+..+  +..+++|++|+++++.++++.  .+..++.++.+++..|.+.++..  +..+++++.|+++
T Consensus       242 ~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls  315 (384)
T d2omza2         242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY  315 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred             ccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccccc--cchhcccCeEECC
Confidence            88888888887766543  556677777777777766554  25566666666666666655432  4555666666666


Q ss_pred             CCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceE
Q psy3329         343 NCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL  422 (694)
Q Consensus       343 ~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L  422 (694)
                      +|+++++++  +.   .                                                        +++|+.|
T Consensus       316 ~n~l~~l~~--l~---~--------------------------------------------------------l~~L~~L  334 (384)
T d2omza2         316 FNNISDISP--VS---S--------------------------------------------------------LTKLQRL  334 (384)
T ss_dssp             SSCCSCCGG--GG---G--------------------------------------------------------CTTCCEE
T ss_pred             CCCCCCCcc--cc---c--------------------------------------------------------CCCCCEE
Confidence            665555432  11   2                                                        5556666


Q ss_pred             EcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCC
Q psy3329         423 RLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANN  477 (694)
Q Consensus       423 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  477 (694)
                      ++++|++++++  .+  .++++|++|++++|+|+++++  +.++++|+.|+|++|
T Consensus       335 ~L~~n~l~~l~--~l--~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         335 FFANNKVSDVS--SL--ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCCCG--GG--GGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ECCCCCCCCCh--hH--cCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            66666665543  23  667777777777777777665  677777888887776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-28  Score=240.34  Aligned_cols=237  Identities=27%  Similarity=0.446  Sum_probs=170.1

Q ss_pred             EEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEecc-CCc
Q psy3329         243 LSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILS-GNK  321 (694)
Q Consensus       243 L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~  321 (694)
                      +..++++++.+|.. +  .+.+++|+|++|+++...+.+|.++++|++|++++|.+..+....+.++..++.+... .+.
T Consensus        16 v~c~~~~L~~iP~~-i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQAVPVG-I--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCSSCCTT-C--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCCccCCC-C--CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            34444455555422 1  1345555555555555444455555555555555555555555555555555554433 334


Q ss_pred             ccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhh
Q psy3329         322 LETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVI  401 (694)
Q Consensus       322 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~  401 (694)
                      +..+.+..|.++++|+.|++++|.+..+....+.                                              
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----------------------------------------------  126 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR----------------------------------------------  126 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT----------------------------------------------
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccc----------------------------------------------
Confidence            4444444455555555555555544433322221                                              


Q ss_pred             hhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCC
Q psy3329         402 LFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSM  481 (694)
Q Consensus       402 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  481 (694)
                                .   .+.|+.+++++|.++++++..|  ..+++|+.|++++|+|+++++.+|.++++|+.+++++|++++
T Consensus       127 ----------~---~~~L~~l~l~~N~l~~i~~~~f--~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         127 ----------G---LAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             ----------T---CTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ----------h---hcccchhhhccccccccChhHh--ccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence                      1   6678888888888888888888  888999999999999999999999999999999999999999


Q ss_pred             CcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329         482 TSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       482 ~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~  546 (694)
                      +.|..|   ..+++|++||+++|++.++++..+..+++|+.+++++|||.|+|++.|+..|++..
T Consensus       192 i~~~~f---~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~  253 (284)
T d1ozna_         192 VHPHAF---RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF  253 (284)
T ss_dssp             ECTTTT---TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred             cChhHh---hhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhC
Confidence            999888   88999999999999999999999999999999999999999999999999999873

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-26  Score=227.60  Aligned_cols=124  Identities=33%  Similarity=0.509  Sum_probs=108.9

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|+.|++++|.+..+....+  ..+.+++.|++++|.++.+++..+..+++|+.|++++|+++++++..|   ..+++
T Consensus        99 l~~L~~L~l~~~~~~~~~~~~~--~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~---~~l~~  173 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL---NGLEN  173 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT---TTCTT
T ss_pred             ccccccccccccccceeecccc--ccccccccccccccccceeccccccccccchhcccccccccccCcccc---ccccc
Confidence            6777888888888877777777  788899999999999999999988899999999999999999888888   88899


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHh
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATR  545 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~  545 (694)
                      |++|+|++|+|+.++++ +..+++|+.+++++|||.|||.+.|+..|++.
T Consensus       174 L~~L~Ls~N~L~~lp~~-~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         174 LDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD  222 (266)
T ss_dssp             CCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             cceeecccCCCcccChh-HCCCCCCCEEEecCCCCCCCcchHHHHHHHHh
Confidence            99999999999965444 55688999999999999999999999999976

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.6e-24  Score=216.96  Aligned_cols=268  Identities=22%  Similarity=0.345  Sum_probs=190.9

Q ss_pred             CCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEEC
Q psy3329         214 KLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDM  293 (694)
Q Consensus       214 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L  293 (694)
                      .++.++-++..++.++..  +  .+++++|++++|+|+.+++.+|..+++|++|++++|.+....+..|..+++|++|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~--l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD--L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS--C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCC--C--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            345566666555554321  1  256777777777777777667777777777777777777776777777777777777


Q ss_pred             cCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcc--cCccccccCCCCCCCCeeeCCCC
Q psy3329         294 GYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTR--LNETVFHENYTYPDLEELRLSGN  371 (694)
Q Consensus       294 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~L~~L~Ls~n  371 (694)
                      ++|+++.++..   ..+.++.|++.+|.+..+....+.....+..++...|....  .....+.   .+++|+.+++++|
T Consensus        87 ~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~---~l~~L~~l~l~~n  160 (305)
T d1xkua_          87 SKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ---GMKKLSYIRIADT  160 (305)
T ss_dssp             CSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG---GCTTCCEEECCSS
T ss_pred             cCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccc---cccccCccccccC
Confidence            77777776642   23567777777777777777777777777777777765433  2233344   5677788888887


Q ss_pred             CCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEcc
Q psy3329         372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLS  451 (694)
Q Consensus       372 ~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls  451 (694)
                      .+..++.            ..                       +++|+.|++++|..+...+..|  ..++.++.|+++
T Consensus       161 ~l~~l~~------------~~-----------------------~~~L~~L~l~~n~~~~~~~~~~--~~~~~l~~L~~s  203 (305)
T d1xkua_         161 NITTIPQ------------GL-----------------------PPSLTELHLDGNKITKVDAASL--KGLNNLAKLGLS  203 (305)
T ss_dssp             CCCSCCS------------SC-----------------------CTTCSEEECTTSCCCEECTGGG--TTCTTCCEEECC
T ss_pred             CccccCc------------cc-----------------------CCccCEEECCCCcCCCCChhHh--hccccccccccc
Confidence            7764432            11                       6678888888888887777777  778888888888


Q ss_pred             CCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhh------cCCCcccEEEc
Q psy3329         452 RCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVL------RHNRAITSIKL  525 (694)
Q Consensus       452 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~------~~~~~l~~l~l  525 (694)
                      +|.++++++..+.++++|++|+|++|+|+.+ |..|   ..+++|++|+|++|+|+.+....|      ....+|+.+++
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l---~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGL---ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTT---TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             cccccccccccccccccceeeeccccccccc-cccc---ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEEC
Confidence            8888888888888888888888888888765 4455   778888888888888887655443      34567888888


Q ss_pred             cCCcccc
Q psy3329         526 VGNPWKC  532 (694)
Q Consensus       526 ~~N~~~c  532 (694)
                      ++||+.+
T Consensus       280 ~~N~~~~  286 (305)
T d1xkua_         280 FSNPVQY  286 (305)
T ss_dssp             CSSSSCG
T ss_pred             CCCcCcc
Confidence            8888865

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.5e-24  Score=213.75  Aligned_cols=84  Identities=27%  Similarity=0.389  Sum_probs=40.7

Q ss_pred             CceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCC
Q psy3329          18 GLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNR   97 (694)
Q Consensus        18 ~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~   97 (694)
                      ..++++.+++.++.+|..+  .+++++|+|++|+++.+.+.+|.++++|++|++++|.+..+.+..|.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            3445555555555555332  23455555555555544444444444555555554444444444444444444444444


Q ss_pred             CcCCcc
Q psy3329          98 CNLTYI  103 (694)
Q Consensus        98 n~l~~~  103 (694)
                      |+++.+
T Consensus        89 n~l~~l   94 (305)
T d1xkua_          89 NQLKEL   94 (305)
T ss_dssp             SCCSBC
T ss_pred             CccCcC
Confidence            444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=2.6e-26  Score=231.04  Aligned_cols=255  Identities=18%  Similarity=0.192  Sum_probs=196.7

Q ss_pred             CccEEEccCcCCCcC--CcccccCCCCccEEeCCC-CCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEE
Q psy3329         239 KLHRLSLRNCGLSRL--PANTFHRFTCLQELDISH-NPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTL  315 (694)
Q Consensus       239 ~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  315 (694)
                      +++.|+++++++++.  .+..+..+++|++|+|++ |.+.+.+|..++++++|++|+|++|++.++.+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            567777777766642  235677778888888875 67777777778888888888888888887777777788888888


Q ss_pred             eccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCC-CCeeeCCCCCCcCCCCcccccccccccchhcc
Q psy3329         316 ILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPD-LEELRLSGNPLHVLPDSTKQYSMRTIPTQIWK  394 (694)
Q Consensus       316 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~  394 (694)
                      ++++|.+....+..+..++.|+.+++++|.+++..+..+.   .+.. ++.+++++|+++....           ..+  
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~---~l~~l~~~l~~~~n~l~~~~~-----------~~~--  194 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG---SFSKLFTSMTISRNRLTGKIP-----------PTF--  194 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG---CCCTTCCEEECCSSEEEEECC-----------GGG--
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccc---ccccccccccccccccccccc-----------ccc--
Confidence            8888887777777778888888888888887764333333   4444 4778888887753221           111  


Q ss_pred             ccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEc
Q psy3329         395 NFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNL  474 (694)
Q Consensus       395 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  474 (694)
                                      .    ......++++.+...+..+..+  ..+++++.+++++|.+++.++. +..+++|+.|+|
T Consensus       195 ----------------~----~l~~~~l~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~l~~~~~~-~~~~~~L~~L~L  251 (313)
T d1ogqa_         195 ----------------A----NLNLAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDL  251 (313)
T ss_dssp             ----------------G----GCCCSEEECCSSEEEECCGGGC--CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEEC
T ss_pred             ----------------c----cccccccccccccccccccccc--cccccccccccccccccccccc-cccccccccccC
Confidence                            1    2344578888888888887777  7889999999999999887664 688899999999


Q ss_pred             cCCccCCCcchhhhhhcccCCCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCc
Q psy3329         475 ANNNLSMTSELSFQFLDVLLELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNI  536 (694)
Q Consensus       475 ~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~  536 (694)
                      ++|+++|.+|..+   +++++|++|+|++|+|+|.+|+ +..+++|+.+++++|++.|+.|+
T Consensus       252 s~N~l~g~iP~~l---~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         252 RNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             CSSCCEECCCGGG---GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTS
T ss_pred             ccCeecccCChHH---hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCC
Confidence            9999999999888   8999999999999999998775 46788899999999999887554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-22  Score=201.05  Aligned_cols=224  Identities=27%  Similarity=0.356  Sum_probs=172.4

Q ss_pred             EEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECc-C
Q psy3329         217 TLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMG-Y  295 (694)
Q Consensus       217 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~-~  295 (694)
                      .++.+++.++.++..    -.+++++|+|++|+|+.+++.+|.++++|++|++++|.+....+..+..+..++++... .
T Consensus        15 ~v~c~~~~L~~iP~~----ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCSSCCTT----CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCCccCCC----CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            345555555554321    12568899999999999888889999999999999999998888888888889998764 5


Q ss_pred             CCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcC
Q psy3329         296 SNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHV  375 (694)
Q Consensus       296 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  375 (694)
                      +.++.+.+..|.++++|++|++++|.+..+....+..+.+|+.+++++|.++.+++..|.   .                
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~---~----------------  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR---D----------------  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---T----------------
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhc---c----------------
Confidence            678888888999999999999999999888888888899999999999999888776664   3                


Q ss_pred             CCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcC
Q psy3329         376 LPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKI  455 (694)
Q Consensus       376 ~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l  455 (694)
                                                              +++|+.|++++|.++.+++..|  .++++|+.+++++|++
T Consensus       152 ----------------------------------------~~~L~~L~l~~N~l~~l~~~~f--~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         152 ----------------------------------------LGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             ----------------------------------------CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCC
T ss_pred             ----------------------------------------ccchhhcccccCcccccchhhh--ccccccchhhhhhccc
Confidence                                                    4445555555666666666666  6677777777777777


Q ss_pred             CccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCCcccc
Q psy3329         456 DYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNNNLTH  508 (694)
Q Consensus       456 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~l~~  508 (694)
                      +++.+..|.++++|++|++++|+++++++..|   +.+++|+.|++++|.+..
T Consensus       190 ~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~---~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEAL---APLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHH---TTCTTCCEEECCSSCEEC
T ss_pred             cccChhHhhhhhhccccccccccccccccccc---ccccccCEEEecCCCCCC
Confidence            77777777777777777777777777776666   667777777777777665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=3.9e-24  Score=214.97  Aligned_cols=232  Identities=21%  Similarity=0.227  Sum_probs=132.7

Q ss_pred             cCCCCccEEEccC-cCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCc
Q psy3329         235 KPLTKLHRLSLRN-CGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLK  313 (694)
Q Consensus       235 ~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  313 (694)
                      ..+++|++|++++ |++++..+..+.++++|++|+|++|.+.+..+..+..+..|+++++++|.+....+..+.++++++
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            3444444444443 333322223344444444444444444444444444444455555554444444444455555555


Q ss_pred             EEeccCCcccCcCchhhcCCCCC-CEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchh
Q psy3329         314 TLILSGNKLETLESGLFQNLTHL-SVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQI  392 (694)
Q Consensus       314 ~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~  392 (694)
                      .+++++|.+.+..+..+..+..+ +.+++++|++++..+..+.   . .....++++.+.+..           .+|...
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~---~-l~~~~l~l~~~~~~~-----------~~~~~~  217 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA---N-LNLAFVDLSRNMLEG-----------DASVLF  217 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG---G-CCCSEEECCSSEEEE-----------CCGGGC
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccc---c-ccccccccccccccc-----------cccccc
Confidence            55555555544444334444433 4455555555544333332   1 223345555444331           111111


Q ss_pred             ccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEE
Q psy3329         393 WKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSL  472 (694)
Q Consensus       393 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  472 (694)
                                        ..   +++++.+++++|.+.+.++. +  ..+++|+.|+|++|++++..|..|+++++|++|
T Consensus       218 ------------------~~---~~~l~~l~~~~~~l~~~~~~-~--~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L  273 (313)
T d1ogqa_         218 ------------------GS---DKNTQKIHLAKNSLAFDLGK-V--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             ------------------CT---TSCCSEEECCSSEECCBGGG-C--CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             ------------------cc---cccccccccccccccccccc-c--ccccccccccCccCeecccCChHHhCCCCCCEE
Confidence                              11   66777788888877766553 4  667889999999999998777778899999999


Q ss_pred             EccCCccCCCcchhhhhhcccCCCcEEECCCCc-cccc
Q psy3329         473 NLANNNLSMTSELSFQFLDVLLELESLDLSNNN-LTHI  509 (694)
Q Consensus       473 ~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N~-l~~~  509 (694)
                      +|++|+|+|.+|. +   .++++|+.+++++|+ +.|.
T Consensus       274 ~Ls~N~l~g~iP~-~---~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         274 NVSFNNLCGEIPQ-G---GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ECCSSEEEEECCC-S---TTGGGSCGGGTCSSSEEEST
T ss_pred             ECcCCcccccCCC-c---ccCCCCCHHHhCCCccccCC
Confidence            9999999987774 3   678889999999997 5554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8e-21  Score=185.28  Aligned_cols=87  Identities=30%  Similarity=0.357  Sum_probs=61.3

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +.+++.|++++|.++.+++..+  ..+++|+.|++++|+|+++++..|..+++|++|+|++|+|+.+++. +   ..+++
T Consensus       123 l~~l~~L~l~~n~l~~l~~~~~--~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~-~---~~~~~  196 (266)
T d1p9ag_         123 LGELQELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-F---FGSHL  196 (266)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T---TTTCC
T ss_pred             ccccccccccccccceeccccc--cccccchhcccccccccccCccccccccccceeecccCCCcccChh-H---CCCCC
Confidence            5666677777777777766666  6677777777777777777777777777777777777777754433 3   35677


Q ss_pred             CcEEECCCCcccc
Q psy3329         496 LESLDLSNNNLTH  508 (694)
Q Consensus       496 L~~L~ls~N~l~~  508 (694)
                      |+.|+|++|.+..
T Consensus       197 L~~L~L~~Np~~C  209 (266)
T d1p9ag_         197 LPFAFLHGNPWLC  209 (266)
T ss_dssp             CSEEECCSCCBCC
T ss_pred             CCEEEecCCCCCC
Confidence            7777777777653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.86  E-value=6.7e-19  Score=179.67  Aligned_cols=57  Identities=33%  Similarity=0.380  Sum_probs=34.9

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMT  482 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  482 (694)
                      +++|++|++++|.++.++.      .+++|+.|+|++|+|+.++.    .+++|++|+|++|+++.+
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~------~~~~L~~L~L~~N~L~~l~~----~~~~L~~L~L~~N~L~~l  339 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPA------LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREF  339 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC
T ss_pred             CCCCCEEECCCCccCcccc------ccCCCCEEECCCCcCCcccc----ccCCCCEEECcCCcCCCC
Confidence            4566666666666665432      24567777777777766543    134677777777776643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=1.8e-18  Score=176.41  Aligned_cols=304  Identities=24%  Similarity=0.266  Sum_probs=222.9

Q ss_pred             CCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCC
Q psy3329          17 PGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLN   96 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~   96 (694)
                      .++++|+|+++.++.+|+   ..++|++|++++|+++.+ |..   ..+|+.|++++|.++.+..  +  .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~~lp~---~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE---LPPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSCCCS--C--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCCC---CCCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccchhhh--h--cccccccccc
Confidence            368899999999999985   357899999999999877 433   5689999999999887643  2  2469999999


Q ss_pred             CCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCC
Q psy3329          97 RCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELID  176 (694)
Q Consensus        97 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~  176 (694)
                      +|.+..++  .++.+++|+.|+++++.+.....      ....+..+.+..+.....  ..+..++.++.+.+..|....
T Consensus       107 ~n~l~~lp--~~~~l~~L~~L~l~~~~~~~~~~------~~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         107 NNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             SSCCSSCC--CCTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccc--chhhhccceeecccccccccccc------ccccccchhhcccccccc--ccccccccceecccccccccc
Confidence            99998874  36789999999999998874332      346777888877665543  346778889999999887765


Q ss_pred             cchhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcc
Q psy3329         177 LDVATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPAN  256 (694)
Q Consensus       177 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  256 (694)
                      ...      .....+.+....+.+ ..++  .+..++.|+.+++++|......     ....++..+.+..+.+...+. 
T Consensus       177 ~~~------~~~~~~~l~~~~~~~-~~~~--~~~~l~~L~~l~l~~n~~~~~~-----~~~~~l~~~~~~~~~~~~~~~-  241 (353)
T d1jl5a_         177 LPD------LPLSLESIVAGNNIL-EELP--ELQNLPFLTTIYADNNLLKTLP-----DLPPSLEALNVRDNYLTDLPE-  241 (353)
T ss_dssp             CCC------CCTTCCEEECCSSCC-SSCC--CCTTCTTCCEEECCSSCCSSCC-----SCCTTCCEEECCSSCCSCCCC-
T ss_pred             ccc------ccccccccccccccc-cccc--cccccccccccccccccccccc-----ccccccccccccccccccccc-
Confidence            432      223345666666555 3443  2567889999999988765443     344678888888887776542 


Q ss_pred             cccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCC
Q psy3329         257 TFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHL  336 (694)
Q Consensus       257 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  336 (694)
                         ....+...++..+.+.+...    -.......++..+.+..+.    ..+++|++|+|++|+++.++.    .+++|
T Consensus       242 ---~~~~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~~~~----~~~~~L~~L~Ls~N~l~~lp~----~~~~L  306 (353)
T d1jl5a_         242 ---LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPA----LPPRL  306 (353)
T ss_dssp             ---CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred             ---cccccccccccccccccccc----ccchhcccccccCcccccc----ccCCCCCEEECCCCccCcccc----ccCCC
Confidence               23567777777766544311    1234566777777776654    346899999999999988764    36899


Q ss_pred             CEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCC
Q psy3329         337 SVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD  378 (694)
Q Consensus       337 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  378 (694)
                      +.|++++|+|+.++.       .+++|++|++++|+++.+|.
T Consensus       307 ~~L~L~~N~L~~l~~-------~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         307 ERLIASFNHLAEVPE-------LPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSSCCC
T ss_pred             CEEECCCCcCCcccc-------ccCCCCEEECcCCcCCCCCc
Confidence            999999999998764       35789999999999987653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=1.4e-20  Score=173.47  Aligned_cols=143  Identities=27%  Similarity=0.434  Sum_probs=126.9

Q ss_pred             CCCCceEEcCCCCCcc-cCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccC
Q psy3329         416 YPDLEELRLSGNPLHV-LPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLL  494 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~  494 (694)
                      .+++++|+|++|.|++ +....|  ..+++|+.|+|++|.+..+++..|..+++|++|+|++|+|+++.+.+|   .+++
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f--~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F---~~l~  102 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLF--GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF---LGLH  102 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSG--GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS---TTCT
T ss_pred             CCCCCEEEeCCCCCccccccccc--CCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHH---hCCC
Confidence            5689999999999986 556677  899999999999999999999999999999999999999999999999   8999


Q ss_pred             CCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhccCCCceeecCCCCcccc
Q psy3329         495 ELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATREKGDIGVLVGSTTPTEIG  563 (694)
Q Consensus       495 ~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (694)
                      +|++|+|++|+|+++++++|..+++|+++++++|+|.|+|+..|+..|+...........+..|....+
T Consensus       103 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~  171 (192)
T d1w8aa_         103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD  171 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTT
T ss_pred             cccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcC
Confidence            999999999999999999999999999999999999999999999999887544444444444544443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.9e-18  Score=161.76  Aligned_cols=201  Identities=21%  Similarity=0.314  Sum_probs=111.5

Q ss_pred             EcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCC
Q psy3329         219 YLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNL  298 (694)
Q Consensus       219 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l  298 (694)
                      +++.+++++...   ...+.+|+.|++.+|+++.+.  .+..+++|++|++++|.+.+..+  +..+++++++++++|.+
T Consensus        25 ~l~~~~~~d~~~---~~~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          25 AAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HhCCCCcCCcCC---HHHcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            344444444331   234456666666666666653  25566666666666666655433  55566666666666665


Q ss_pred             cccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCC
Q psy3329         299 QRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPD  378 (694)
Q Consensus       299 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  378 (694)
                      +.+.  .+.++++|+.++++++....+.+  +...+.+..+.++++.+.....  +.   .                   
T Consensus        98 ~~i~--~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~--~~---~-------------------  149 (227)
T d1h6ua2          98 KNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LA---G-------------------  149 (227)
T ss_dssp             SCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GG---G-------------------
T ss_pred             cccc--cccccccccccccccccccccch--hccccchhhhhchhhhhchhhh--hc---c-------------------
Confidence            5543  35556666666666655544433  3444555555555554443221  11   2                   


Q ss_pred             cccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCcc
Q psy3329         379 STKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYL  458 (694)
Q Consensus       379 ~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  458 (694)
                                                           +++|+.|++++|.++...+  +  .++++|+.|+|++|+++++
T Consensus       150 -------------------------------------~~~L~~L~l~~n~~~~~~~--l--~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         150 -------------------------------------LTNLQYLSIGNAQVSDLTP--L--ANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCCCCC
T ss_pred             -------------------------------------ccccccccccccccccchh--h--cccccceecccCCCccCCC
Confidence                                                 4455555555555544332  2  4566666666666666665


Q ss_pred             CCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECC
Q psy3329         459 PPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS  502 (694)
Q Consensus       459 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls  502 (694)
                      ++  +.++++|++|+|++|+++++.+  +   +++++|+.|+++
T Consensus       189 ~~--l~~l~~L~~L~Ls~N~lt~i~~--l---~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 SP--LASLPNLIEVHLKNNQISDVSP--L---ANTSNLFIVTLT  225 (227)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--G---TTCTTCCEEEEE
T ss_pred             hh--hcCCCCCCEEECcCCcCCCCcc--c---ccCCCCCEEEee
Confidence            43  5566667777777776665543  3   566677777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.3e-19  Score=190.30  Aligned_cols=307  Identities=18%  Similarity=0.232  Sum_probs=165.8

Q ss_pred             CCceEEECcCCCCcchh--hhhhcCCCCcEEEccCCcCCccC----hhhccCCCCCCeEECCCCCCCccC----CCCCC-
Q psy3329          17 PGLITINLNANPIQPVE--GAFLVARSLLYLYMQECTLSKIN----PQFFTNLTTLNKLDLSGNPLRIIE----PGVFD-   85 (694)
Q Consensus        17 ~~L~~L~Ls~~~l~~i~--~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~-   85 (694)
                      ++|+.||+++++++...  +.+..++++++|+|++|.++...    ..++..+++|++|+|++|.++...    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46899999999999654  67788999999999999887432    345688999999999999886311    11122 


Q ss_pred             CCCCCCEEeCCCCcCCccC----hhhhcCCCCCCEEECCCCcCCccch--hhhhhc-CCCCCCEEEccCCCCCCCCc---
Q psy3329          86 PLTSLEYLMLNRCNLTYIS----PSAFDNLNHLKTLELSQNKLKSHID--WTLVLG-NLGKLDTLDLRQSGISNLPD---  155 (694)
Q Consensus        86 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~-~l~~L~~L~L~~n~i~~~~~---  155 (694)
                      ...+|++|+|++|.+++..    +.++..+++|++|++++|.+...+.  +...+. ..............+.....   
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            3457999999999987642    4567788999999999998764321  111121 12223334333333221111   


Q ss_pred             -cccCCCCCCcEEeCCCCCCCCcchhhh---cccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCCCCCCccch-
Q psy3329         156 -NVFANNTWLRNLNLAENELIDLDVATT---LGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSGNPLSAADL-  230 (694)
Q Consensus       156 -~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-  230 (694)
                       ..+.....++.+.++++..........   ..........+.+..+.+                         ..... 
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-------------------------~~~~~~  216 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-------------------------TSDNCR  216 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC-------------------------BTTHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-------------------------cchhhh
Confidence             112233455555555554332111100   001122333444444433                         22111 


Q ss_pred             --hhhccCCCCccEEEccCcCCCcC-----CcccccCCCCccEEeCCCCCCccc----chhhcCCCCCCcEEECcCCCCc
Q psy3329         231 --SVALKPLTKLHRLSLRNCGLSRL-----PANTFHRFTCLQELDISHNPLIDA----FTALLSPLESLEHLDMGYSNLQ  299 (694)
Q Consensus       231 --~~~l~~l~~L~~L~l~~n~i~~~-----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~  299 (694)
                        ...+...+.++.+.+..|.+...     ..........++.+++++|.+...    ....+...+.++.+++++|.++
T Consensus       217 ~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         217 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  296 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             cccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              11123334445555554433211     111223344555666665555432    1122334555666666666654


Q ss_pred             ccChhhh-----cCCCCCcEEeccCCcccCcCch----hhcCCCCCCEEeCCCCCCcc
Q psy3329         300 RISRSTF-----LKMTSLKTLILSGNKLETLESG----LFQNLTHLSVLELNNCGLTR  348 (694)
Q Consensus       300 ~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~  348 (694)
                      ......+     .....|+.+++++|.++.....    .+...++|++|+|++|+++.
T Consensus       297 ~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~  354 (460)
T d1z7xw1         297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  354 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             ccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccC
Confidence            3221111     2334667777777666544322    23445677777777777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.9e-18  Score=161.78  Aligned_cols=205  Identities=21%  Similarity=0.345  Sum_probs=149.8

Q ss_pred             cEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCC
Q psy3329         265 QELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNC  344 (694)
Q Consensus       265 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  344 (694)
                      ..++++.+.+.+...  +..+.+|++|++.+|.++.+.  .+..+++|++|++++|.+.++.+  +..+++|+.+++++|
T Consensus        22 ~~~~l~~~~~~d~~~--~~~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcCC--HHHcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            334555555555432  234556777777777776663  36677777777777777776654  677777777777777


Q ss_pred             CCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEc
Q psy3329         345 GLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRL  424 (694)
Q Consensus       345 ~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L  424 (694)
                      .++.++.  +.   .+++|+.++++++.......                               +..   .+.+..+.+
T Consensus        96 ~~~~i~~--l~---~l~~L~~l~l~~~~~~~~~~-------------------------------~~~---~~~~~~l~~  136 (227)
T d1h6ua2          96 PLKNVSA--IA---GLQSIKTLDLTSTQITDVTP-------------------------------LAG---LSNLQVLYL  136 (227)
T ss_dssp             CCSCCGG--GT---TCTTCCEEECTTSCCCCCGG-------------------------------GTT---CTTCCEEEC
T ss_pred             ccccccc--cc---ccccccccccccccccccch-------------------------------hcc---ccchhhhhc
Confidence            7766542  22   57778888887776653321                               111   677888888


Q ss_pred             CCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECCCC
Q psy3329         425 SGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLSNN  504 (694)
Q Consensus       425 s~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls~N  504 (694)
                      +++.+....+  +  ..+++|+.|++++|.++...+  +.++++|+.|+|++|+++++.+  +   +.+++|++|+|++|
T Consensus       137 ~~~~~~~~~~--~--~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~--l---~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         137 DLNQITNISP--L--AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--L---ASLPNLIEVHLKNN  205 (227)
T ss_dssp             CSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G---GGCTTCCEEECTTS
T ss_pred             hhhhhchhhh--h--ccccccccccccccccccchh--hcccccceecccCCCccCCChh--h---cCCCCCCEEECcCC
Confidence            8888776543  3  678899999999999987654  7899999999999999998643  4   88999999999999


Q ss_pred             cccccChhhhcCCCcccEEEccC
Q psy3329         505 NLTHISPTVLRHNRAITSIKLVG  527 (694)
Q Consensus       505 ~l~~~~~~~~~~~~~l~~l~l~~  527 (694)
                      +++++.|  ++.+++|+.+++++
T Consensus       206 ~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         206 QISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCBCGG--GTTCTTCCEEEEEE
T ss_pred             cCCCCcc--cccCCCCCEEEeeC
Confidence            9998754  78899999999863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.5e-20  Score=195.14  Aligned_cols=111  Identities=17%  Similarity=0.134  Sum_probs=55.2

Q ss_pred             CCcEEEccCCcCCccC-hhhccCCCCCCeEECCCCCCCccC----CCCCCCCCCCCEEeCCCCcCCccChh----hhc-C
Q psy3329          41 SLLYLYMQECTLSKIN-PQFFTNLTTLNKLDLSGNPLRIIE----PGVFDPLTSLEYLMLNRCNLTYISPS----AFD-N  110 (694)
Q Consensus        41 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~----~l~-~  110 (694)
                      +|+.|++++++++... ...+..++++++|+|++|.++...    ...+..+++|++|+|++|.|+.....    .+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4667777777666532 222455566666666666655211    12234555666666666655432111    111 1


Q ss_pred             CCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCCC
Q psy3329         111 LNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGIS  151 (694)
Q Consensus       111 l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i~  151 (694)
                      ..+|+.|++++|.+++.+  .++..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            234566666655554322  12334445555555555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.7e-18  Score=164.85  Aligned_cols=208  Identities=15%  Similarity=0.196  Sum_probs=126.2

Q ss_pred             cEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccchhhcCCCCCCcEEECcCCCCcc-cChhhhcCCCCCcEEeccC
Q psy3329         241 HRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAFTALLSPLESLEHLDMGYSNLQR-ISRSTFLKMTSLKTLILSG  319 (694)
Q Consensus       241 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~  319 (694)
                      +.++.++.+++.+|...+   +++++|++++|.+....+.+|.++++|++|++++|.+.. +.+..|.++++++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            567777777887775432   467888888888877666677888888888888887654 4556677788888877654


Q ss_pred             -CcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCCeeeCCCCCCcCCCCcccccccccccchhccccch
Q psy3329         320 -NKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLEELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDF  398 (694)
Q Consensus       320 -n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~  398 (694)
                       |.+..+.+..|.++++|+.+++++|.++..+...+.  ..+..+..+...++.+..++.            ..      
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~--~~l~~l~~~~~~n~~l~~i~~------------~~------  147 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI--HSLQKVLLDIQDNINIHTIER------------NS------  147 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTT--CBSSCEEEEEESCTTCCEECT------------TS------
T ss_pred             cccccccccccccccccccccccchhhhccccccccc--ccccccccccccccccccccc------------cc------
Confidence             567777777777788888888888777665432211  023344444444444433221            00      


Q ss_pred             hhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCCcc-EEEccCCcCCccCCCCCCCCCCCCEEEccCC
Q psy3329         399 LVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSRLR-SLDLSRCKIDYLPPNVFNNTRNITSLNLANN  477 (694)
Q Consensus       399 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  477 (694)
                                 |.+  ....++.|++++|.++.++...|  . ..++. .+++++|+|+.+++..|.++++|++|+|++|
T Consensus       148 -----------~~~--~~~~l~~L~l~~n~l~~i~~~~~--~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         148 -----------FVG--LSFESVILWLNKNGIQEIHNCAF--N-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             -----------STT--SBSSCEEEECCSSCCCEECTTTT--T-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             -----------ccc--ccccceeeecccccccccccccc--c-chhhhccccccccccccccHHHhcCCCCCCEEECCCC
Confidence                       111  02245556666666666555544  2 23333 3345555666666666666666666666666


Q ss_pred             ccCCCcchhh
Q psy3329         478 NLSMTSELSF  487 (694)
Q Consensus       478 ~l~~~~~~~~  487 (694)
                      +|+.+++..|
T Consensus       212 ~l~~l~~~~~  221 (242)
T d1xwdc1         212 RIHSLPSYGL  221 (242)
T ss_dssp             CCCCCCSSSC
T ss_pred             cCCccCHHHH
Confidence            6665554444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-18  Score=165.29  Aligned_cols=217  Identities=20%  Similarity=0.279  Sum_probs=117.0

Q ss_pred             cEEEcCCCCCCccchhhhccCCCCccEEEccCcCCCcCCcccccCCCCccEEeCCCCCCcccc-hhhcCCCCCCcEEECc
Q psy3329         216 RTLYLSGNPLSAADLSVALKPLTKLHRLSLRNCGLSRLPANTFHRFTCLQELDISHNPLIDAF-TALLSPLESLEHLDMG  294 (694)
Q Consensus       216 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~  294 (694)
                      +.++.++..++.++..    -.+++++|++++|.|+.++..+|.++++|++|++++|.+...+ +..|..++.++++.+.
T Consensus        11 ~~i~c~~~~l~~iP~~----l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSD----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSC----SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCCcCCC----CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            4555555555543321    1135666666666666666556666666666666666655433 3345556666666554


Q ss_pred             C-CCCcccChhhhcCCCCCcEEeccCCcccCcCch-hhcCCCCCCEEeCCCCCCcccCccccccCCCC-CCCCeeeCCCC
Q psy3329         295 Y-SNLQRISRSTFLKMTSLKTLILSGNKLETLESG-LFQNLTHLSVLELNNCGLTRLNETVFHENYTY-PDLEELRLSGN  371 (694)
Q Consensus       295 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~L~~L~Ls~n  371 (694)
                      . |.+..+.+..|.++++|+.+++++|.+....+. .+..+..+..+...++.+..++...|.   .+ ..++.+++++|
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~---~~~~~l~~L~l~~n  163 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSFESVILWLNKN  163 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSST---TSBSSCEEEECCSS
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccc---cccccceeeecccc
Confidence            3 455555555666666666666666666544331 123334444445555556555555544   33 35556666666


Q ss_pred             CCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceE-EcCCCCCcccCCCCCCCcCCCCccEEEc
Q psy3329         372 PLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEEL-RLSGNPLHVLPTGNLLPPQLSRLRSLDL  450 (694)
Q Consensus       372 ~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~~~~~~~~~l~~L~~L~L  450 (694)
                      +++.++.            ..                 |.    .+++..+ ++++|+++.+++..|  .++++|++|+|
T Consensus       164 ~l~~i~~------------~~-----------------~~----~~~l~~~~~l~~n~l~~l~~~~f--~~l~~L~~L~L  208 (242)
T d1xwdc1         164 GIQEIHN------------CA-----------------FN----GTQLDELNLSDNNNLEELPNDVF--HGASGPVILDI  208 (242)
T ss_dssp             CCCEECT------------TT-----------------TT----TCCEEEEECTTCTTCCCCCTTTT--TTSCCCSEEEC
T ss_pred             ccccccc------------cc-----------------cc----chhhhccccccccccccccHHHh--cCCCCCCEEEC
Confidence            6543322            11                 11    2333333 345556666666555  56666666666


Q ss_pred             cCCcCCccCCCCCCCCCCCCEEEc
Q psy3329         451 SRCKIDYLPPNVFNNTRNITSLNL  474 (694)
Q Consensus       451 s~n~l~~~~~~~~~~l~~L~~L~L  474 (694)
                      ++|+|+.+++..|.++++|+.+++
T Consensus       209 s~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         209 SRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             CCCcCCccCHHHHcCCcccccCcC
Confidence            666666666655555555555444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.3e-17  Score=153.93  Aligned_cols=164  Identities=24%  Similarity=0.409  Sum_probs=89.7

Q ss_pred             CCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCC
Q psy3329         285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLE  364 (694)
Q Consensus       285 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  364 (694)
                      +.+|++|++++|.++.+.  .+..+++|++|++++|+++++.+  +..+++|+.|++++|+++.++.  +.   .+++|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~--l~---~l~~L~  115 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LK---DLKKLK  115 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GT---TCTTCC
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCcccccccccccccccccc--cc---cccccc
Confidence            345566666666655544  24556666666666666665543  4556666666666666665442  22   455566


Q ss_pred             eeeCCCCCCcCCCCcccccccccccchhccccchhhhhhhhcccccccCCCCCCCceEEcCCCCCcccCCCCCCCcCCCC
Q psy3329         365 ELRLSGNPLHVLPDSTKQYSMRTIPTQIWKNFDFLVILFILNETVFHENYTYPDLEELRLSGNPLHVLPTGNLLPPQLSR  444 (694)
Q Consensus       365 ~L~Ls~n~l~~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~  444 (694)
                      .|++++|.+..++.                               +..   ++.++.+++++|.+++...  +  ..+++
T Consensus       116 ~L~l~~~~~~~~~~-------------------------------l~~---l~~l~~l~~~~n~l~~~~~--~--~~l~~  157 (210)
T d1h6ta2         116 SLSLEHNGISDING-------------------------------LVH---LPQLESLYLGNNKITDITV--L--SRLTK  157 (210)
T ss_dssp             EEECTTSCCCCCGG-------------------------------GGG---CTTCCEEECCSSCCCCCGG--G--GGCTT
T ss_pred             cccccccccccccc-------------------------------ccc---ccccccccccccccccccc--c--ccccc
Confidence            66666555433211                               111   4555666666665554332  1  44566


Q ss_pred             ccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCCCcEEECC
Q psy3329         445 LRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLELESLDLS  502 (694)
Q Consensus       445 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~L~~L~ls  502 (694)
                      |+.+++++|+++++++  +.++++|++|+|++|+++.+.  .+   ..+++|++|+|+
T Consensus       158 L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~--~l---~~l~~L~~L~Ls  208 (210)
T d1h6ta2         158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--AL---AGLKNLDVLELF  208 (210)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GG---TTCTTCSEEEEE
T ss_pred             cccccccccccccccc--ccCCCCCCEEECCCCCCCCCh--hh---cCCCCCCEEEcc
Confidence            6666666666665443  455666666666666665432  23   555566666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=5.9e-18  Score=155.65  Aligned_cols=111  Identities=23%  Similarity=0.367  Sum_probs=90.2

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCCcCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccCC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRCKIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLLE  495 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~~  495 (694)
                      +++|++|+|++|+++.+++..|  .++++|++|+|++|+|+++++.+|..+++|++|+|++|.+.......+    -...
T Consensus        77 ~~~L~~L~Ls~N~l~~l~~~~F--~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~----~~~~  150 (192)
T d1w8aa_          77 ASHIQELQLGENKIKEISNKMF--LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW----FAEW  150 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSS--TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH----HHHH
T ss_pred             ccccceeeeccccccccCHHHH--hCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH----Hhhh
Confidence            7788888889999999888888  899999999999999999999999999999999999999987654332    1123


Q ss_pred             CcEEECCCCcccccChhhhcCCCcccEEEccCCccccccC
Q psy3329         496 LESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCN  535 (694)
Q Consensus       496 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~  535 (694)
                      ++.+.+..|.++...|..   ++.++.++++.|.+.|+++
T Consensus       151 l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         151 LRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             HHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             hhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCC
Confidence            555677788887766654   4456677899999999876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.5e-16  Score=147.09  Aligned_cols=80  Identities=21%  Similarity=0.351  Sum_probs=45.0

Q ss_pred             CCCCcEEECcCCCCcccChhhhcCCCCCcEEeccCCcccCcCchhhcCCCCCCEEeCCCCCCcccCccccccCCCCCCCC
Q psy3329         285 LESLEHLDMGYSNLQRISRSTFLKMTSLKTLILSGNKLETLESGLFQNLTHLSVLELNNCGLTRLNETVFHENYTYPDLE  364 (694)
Q Consensus       285 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  364 (694)
                      ++++++|++++|.+..+.  .+..+++|++|++++|+++++.+  +.++++|+.|++++|.+..++.  +.   .++.|+
T Consensus        39 l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~---~l~~L~  109 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA---NLTNLT  109 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GT---TCTTCS
T ss_pred             hcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc--cc---cccccc
Confidence            345566666666655543  35556666666666666665543  5566666666666666555432  22   445555


Q ss_pred             eeeCCCCCC
Q psy3329         365 ELRLSGNPL  373 (694)
Q Consensus       365 ~L~Ls~n~l  373 (694)
                      .|++++|.+
T Consensus       110 ~L~l~~~~~  118 (199)
T d2omxa2         110 GLTLFNNQI  118 (199)
T ss_dssp             EEECCSSCC
T ss_pred             ccccccccc
Confidence            555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.9e-16  Score=146.24  Aligned_cols=180  Identities=26%  Similarity=0.363  Sum_probs=138.2

Q ss_pred             ceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCC
Q psy3329          19 LITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        19 L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n   98 (694)
                      +....++.+.+++.+ ....++++++|++++|.+..+.  .++.+++|++|++++|+++.+.+  ++++++|++|++++|
T Consensus        20 ~i~~~l~~~~~~~~~-~~~~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          20 KMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHHTTCSSTTSEE-CHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHHhCCCCCCCcc-CHHHhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            334556677776654 1235678888999888888763  47788899999999998888765  788889999999988


Q ss_pred             cCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcc
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLD  178 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~  178 (694)
                      .+..+.  .+.++++|+.|+++++......    .+..+++|+.|++++|.+..++  .+..+++|++|++.+|.+++++
T Consensus        95 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2          95 QIADIT--PLANLTNLTGLTLFNNQITDID----PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             CCCCCG--GGTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG
T ss_pred             cccccc--cccccccccccccccccccccc----ccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCc
Confidence            887763  4788889999999888877543    3677888999999998887664  3778888999999998888764


Q ss_pred             hhhhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEE
Q psy3329         179 VATTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTL  218 (694)
Q Consensus       179 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  218 (694)
                      ..    ..+++|++|++++|.+ ..++  .+..+++|+.|
T Consensus       167 ~l----~~l~~L~~L~ls~N~i-~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         167 PL----ANLTTLERLDISSNKV-SDIS--VLAKLTNLESL  199 (199)
T ss_dssp             GG----TTCTTCCEEECCSSCC-CCCG--GGGGCTTCSEE
T ss_pred             cc----cCCCCCCEEECCCCCC-CCCc--cccCCCCCCcC
Confidence            32    2688899999999988 4454  47788888875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.1e-16  Score=147.29  Aligned_cols=182  Identities=26%  Similarity=0.349  Sum_probs=138.2

Q ss_pred             EEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcC
Q psy3329          21 TINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNL  100 (694)
Q Consensus        21 ~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l  100 (694)
                      ...+..+.++.... ...+.+|++|++++|.+..+.  .+..+++|++|++++|+++.+++  ++.+++|++|++++|++
T Consensus        28 ~~~l~~~~~~~~~~-~~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          28 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHHhCcCccCCccC-HHHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccc
Confidence            34555666654331 124567888888888887764  37788889999999988888764  67788899999988888


Q ss_pred             CccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCCCcchh
Q psy3329         101 TYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELIDLDVA  180 (694)
Q Consensus       101 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  180 (694)
                      +++.  .+..+++|+.|++++|.+..+.    .+..+++++.+++++|.++...  .+..+++|+.+++++|.++++.. 
T Consensus       103 ~~l~--~l~~l~~L~~L~l~~~~~~~~~----~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~-  173 (210)
T d1h6ta2         103 KDLS--SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-  173 (210)
T ss_dssp             CCGG--GGTTCTTCCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cccc--cccccccccccccccccccccc----cccccccccccccccccccccc--ccccccccccccccccccccccc-
Confidence            8763  5788888999999888877543    3667888899999888887654  36678889999999988876543 


Q ss_pred             hhcccCCCcccEEeCCCCCCCCCCChhhhhcCCCCcEEEcCC
Q psy3329         181 TTLGQNLVHLDSLDLSNCHLKGPLSEDAFVNATKLRTLYLSG  222 (694)
Q Consensus       181 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  222 (694)
                       +  ..+++|++|++++|.+ ..++  .+..+++|++|+|++
T Consensus       174 -l--~~l~~L~~L~Ls~N~i-~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 -L--AGLTKLQNLYLSKNHI-SDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -G--TTCTTCCEEECCSSCC-CBCG--GGTTCTTCSEEEEEE
T ss_pred             -c--cCCCCCCEEECCCCCC-CCCh--hhcCCCCCCEEEccC
Confidence             2  2688899999999988 4554  488899999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=140.80  Aligned_cols=124  Identities=19%  Similarity=0.291  Sum_probs=110.9

Q ss_pred             CCCCceEEcCCCCCcccCCCCCCCcCCCCccEEEccCC-cCCccCCCCCCCCCCCCEEEccCCccCCCcchhhhhhcccC
Q psy3329         416 YPDLEELRLSGNPLHVLPTGNLLPPQLSRLRSLDLSRC-KIDYLPPNVFNNTRNITSLNLANNNLSMTSELSFQFLDVLL  494 (694)
Q Consensus       416 ~~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~l~  494 (694)
                      +...+.++++++.+...+.. +  ..+++|+.|++++| .|+.+++.+|.++++|+.|+|++|+|+.+.+.+|   ..++
T Consensus         7 c~~~~~l~c~~~~~~~~p~~-l--~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f---~~l~   80 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHH-L--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF---HFTP   80 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTT-S--CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG---GSCS
T ss_pred             cCCCCeEEecCCCCccCccc-c--cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccc---cccc
Confidence            45567799999988877654 4  67899999999876 5999999999999999999999999999999999   8899


Q ss_pred             CCcEEECCCCcccccChhhhcCCCcccEEEccCCccccccCcHHHHHHHHhc
Q psy3329         495 ELESLDLSNNNLTHISPTVLRHNRAITSIKLVGNPWKCDCNIADMWEWATRE  546 (694)
Q Consensus       495 ~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N~~~c~c~~~~~~~~~~~~  546 (694)
                      +|++|+|++|+|+.+++..+... .++.|++++|||.|+|.+.|+..|....
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~~~~  131 (156)
T d2ifga3          81 RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEG  131 (156)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHHTT
T ss_pred             cccceeccCCCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHHHhc
Confidence            99999999999999988888765 6999999999999999999999998763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-15  Score=147.93  Aligned_cols=125  Identities=18%  Similarity=0.253  Sum_probs=58.0

Q ss_pred             EEECcCCCCc-chhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCcc-CCCCCCCCCCCCEEeCCCC
Q psy3329          21 TINLNANPIQ-PVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRII-EPGVFDPLTSLEYLMLNRC   98 (694)
Q Consensus        21 ~L~Ls~~~l~-~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~~L~L~~n   98 (694)
                      .+||+++.+. .+...+.. ..+..+.+....+..... .......|++|+++++.+... ....+..+++|++|++++|
T Consensus         4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             EEECCCCCCCchHHHHHHh-ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            5677766664 22221211 123445554443322211 122344566666666554421 1222455566666666666


Q ss_pred             cCCccChhhhcCCCCCCEEECCCC-cCCccchhhhhhcCCCCCCEEEccCC
Q psy3329          99 NLTYISPSAFDNLNHLKTLELSQN-KLKSHIDWTLVLGNLGKLDTLDLRQS  148 (694)
Q Consensus        99 ~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n  148 (694)
                      .+.+..+..+.++++|++|+++++ .+++ ..+.....++++|++|+++++
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd-~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCC
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccc-cccchhhHHHHhccccccccc
Confidence            555544455555566666666554 2321 122223344555555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.8e-15  Score=147.93  Aligned_cols=100  Identities=13%  Similarity=0.081  Sum_probs=51.6

Q ss_pred             cEEEccCCcCCccChhhccCC--CCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccC-hhhhcCCCCCCEEEC
Q psy3329          43 LYLYMQECTLSKINPQFFTNL--TTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYIS-PSAFDNLNHLKTLEL  119 (694)
Q Consensus        43 ~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l  119 (694)
                      +.||++++.+.   |+.+..+  ..+..+.++...+...... .....+|++|++++|.+.... ...+.++++|++|++
T Consensus         3 ~~lDLs~~~l~---~~~l~~l~~~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCC---chHHHHHHhccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            35677765543   3322211  2344555555443332222 223456777777766655422 234566666777777


Q ss_pred             CCCcCCccchhhhhhcCCCCCCEEEccCC
Q psy3329         120 SQNKLKSHIDWTLVLGNLGKLDTLDLRQS  148 (694)
Q Consensus       120 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  148 (694)
                      +++.+.+  ..+..+..+++|++|+++++
T Consensus        79 ~~~~l~~--~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          79 EGLRLSD--PIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             TTCBCCH--HHHHHHTTCTTCSEEECTTC
T ss_pred             cccCCCc--HHHHHHhcCCCCcCcccccc
Confidence            6666552  33345555666666666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=133.99  Aligned_cols=131  Identities=18%  Similarity=0.216  Sum_probs=75.3

Q ss_pred             ccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCC
Q psy3329          12 RNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLE   91 (694)
Q Consensus        12 ~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~   91 (694)
                      .|.++..+++|+|++|.|+.++..+..+++|++|++++|.++.+.  .|..+++|++|++++|+++.+++..+..+++|+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccc
Confidence            455666666666666666666655555666666666666666552  355666666666666666666555455566666


Q ss_pred             EEeCCCCcCCccCh-hhhcCCCCCCEEECCCCcCCccchh-hhhhcCCCCCCEEE
Q psy3329          92 YLMLNRCNLTYISP-SAFDNLNHLKTLELSQNKLKSHIDW-TLVLGNLGKLDTLD  144 (694)
Q Consensus        92 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~  144 (694)
                      +|++++|.++.+.. ..+..+++|+.|++++|.++..... +..+..+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666666655422 3455566666666666655543321 12344455555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.7e-14  Score=119.64  Aligned_cols=120  Identities=18%  Similarity=0.170  Sum_probs=84.9

Q ss_pred             eEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCc
Q psy3329          20 ITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCN   99 (694)
Q Consensus        20 ~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~   99 (694)
                      +.|+|++|.++.++. +..+++|++|++++|.++.+ |..+..+++|++|++++|.++.++.  +..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccccccccCc--cccccccCeEECCCCc
Confidence            467888888887763 67778888888888888776 3457778888888888888877643  7778888888888888


Q ss_pred             CCccCh-hhhcCCCCCCEEECCCCcCCccchhhh-hhcCCCCCCEE
Q psy3329         100 LTYISP-SAFDNLNHLKTLELSQNKLKSHIDWTL-VLGNLGKLDTL  143 (694)
Q Consensus       100 l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L  143 (694)
                      ++.+.. ..+..+++|+.|++++|++......+. ....+|+|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            776643 567777888888888887765433222 23345665554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=128.50  Aligned_cols=130  Identities=22%  Similarity=0.242  Sum_probs=102.1

Q ss_pred             hhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCC
Q psy3329          35 AFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHL  114 (694)
Q Consensus        35 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  114 (694)
                      .|.++.++++|+|++|+|+.+ +..+..+++|++|++++|.++.+..  |..+++|++|++++|.++.+.+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCcccccccccc
Confidence            355777899999999999888 4566788999999999999988743  8888999999999999998877777788899


Q ss_pred             CEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCc---cccCCCCCCcEEe
Q psy3329         115 KTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPD---NVFANNTWLRNLN  168 (694)
Q Consensus       115 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~~~~L~~L~  168 (694)
                      +.|++++|.+.....+ ..+..+++|++|++++|.++..+.   ..+..+++|+.|+
T Consensus        90 ~~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccc-cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999988765443 346778888888888888776653   2455566666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=4e-14  Score=142.99  Aligned_cols=43  Identities=23%  Similarity=0.280  Sum_probs=20.8

Q ss_pred             hcCCCCCCEEECCCCcCCccc--hhhhhhcCCCCCCEEEccCCCC
Q psy3329         108 FDNLNHLKTLELSQNKLKSHI--DWTLVLGNLGKLDTLDLRQSGI  150 (694)
Q Consensus       108 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~i  150 (694)
                      +..+++|+.|++++|.+...+  .+...+..+++|++|++++|.+
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            444555555555555554321  2223344445555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.1e-13  Score=114.09  Aligned_cols=101  Identities=26%  Similarity=0.297  Sum_probs=51.3

Q ss_pred             eEECCCCCCCccCCCCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccC
Q psy3329          68 KLDLSGNPLRIIEPGVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQ  147 (694)
Q Consensus        68 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~  147 (694)
                      +|++++|+++.++.  +.++++|++|++++|.++.+ |..+..+++|+.|++++|.++.+.    .+..+++|++|++++
T Consensus         2 ~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~l~----~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD----GVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG----GGTTCSSCCEEECCS
T ss_pred             EEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccccccccC----ccccccccCeEECCC
Confidence            45555555554432  45555555555555555544 234555555555555555555332    244555555555555


Q ss_pred             CCCCCCCc-cccCCCCCCcEEeCCCCCCC
Q psy3329         148 SGISNLPD-NVFANNTWLRNLNLAENELI  175 (694)
Q Consensus       148 n~i~~~~~-~~~~~~~~L~~L~l~~n~l~  175 (694)
                      |.+..++. ..+..+++|+.|++++|.++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            55554432 33445555555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.4e-13  Score=138.99  Aligned_cols=37  Identities=14%  Similarity=0.124  Sum_probs=17.3

Q ss_pred             CCCCCCEEeCCCCcCCccC----hhhhcCCCCCCEEECCCC
Q psy3329          86 PLTSLEYLMLNRCNLTYIS----PSAFDNLNHLKTLELSQN  122 (694)
Q Consensus        86 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n  122 (694)
                      ....|+.|+|++|.+....    ...+...++|+.|+++++
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~   69 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI   69 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCC
Confidence            3455555555555443321    122334455555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.9e-12  Score=109.96  Aligned_cols=109  Identities=23%  Similarity=0.244  Sum_probs=97.4

Q ss_pred             CCCceEEECcCCCCcchhhhhhcCCCCcEEEccCC-cCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCEEe
Q psy3329          16 NPGLITINLNANPIQPVEGAFLVARSLLYLYMQEC-TLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEYLM   94 (694)
Q Consensus        16 ~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~   94 (694)
                      +.....++++++.+.++|..+..+++|++|++.++ .++.+.+.+|.++++|+.|++++|+++.+.+.+|..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34456789999999999988889999999999766 59999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCccChhhhcCCCCCCEEECCCCcCC
Q psy3329          95 LNRCNLTYISPSAFDNLNHLKTLELSQNKLK  125 (694)
Q Consensus        95 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  125 (694)
                      |++|+++.+++..|..+ +|+.|+|++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCccc
Confidence            99999999987777655 6999999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=5e-14  Score=128.99  Aligned_cols=131  Identities=21%  Similarity=0.279  Sum_probs=90.0

Q ss_pred             CCCCceEEECcCC--CCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCCCE
Q psy3329          15 DNPGLITINLNAN--PIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSLEY   92 (694)
Q Consensus        15 ~~~~L~~L~Ls~~--~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~   92 (694)
                      ....++.+++...  .+..++..+..+++|++|+|++|.|+.+.  .+..+++|++|++++|.++.++. .+..+++|++
T Consensus        21 ~~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~   97 (198)
T d1m9la_          21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEE   97 (198)
T ss_dssp             CCTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCE
T ss_pred             cccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc--cccCCccccChhhcccccccccc-cccccccccc
Confidence            3445566666654  46667777888888888888888877763  37777888888888887776643 2344567788


Q ss_pred             EeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCC
Q psy3329          93 LMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGIS  151 (694)
Q Consensus        93 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~  151 (694)
                      |++++|.++.+  ..+..+++|+.|++++|+++.+..+ ..+..+++|+.|++++|.+.
T Consensus        98 L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          98 LWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccc--ccccccccccccccccchhcccccc-ccccCCCccceeecCCCccc
Confidence            88888877765  3466777778888887777654322 34667777777777777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=9.1e-14  Score=127.20  Aligned_cols=130  Identities=21%  Similarity=0.221  Sum_probs=105.8

Q ss_pred             cccCCCCCceEEECcCCCCcchhhhhhcCCCCcEEEccCCcCCccChhhccCCCCCCeEECCCCCCCccCCCCCCCCCCC
Q psy3329          11 RRNLDNPGLITINLNANPIQPVEGAFLVARSLLYLYMQECTLSKINPQFFTNLTTLNKLDLSGNPLRIIEPGVFDPLTSL   90 (694)
Q Consensus        11 ~~~~~~~~L~~L~Ls~~~l~~i~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L   90 (694)
                      ..+..+++|++|+|++|.|+.++ .+..+++|++|++++|.++.+. ..+..++.|+.|++++|.++.+.+  +..+++|
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l~~--~~~l~~L  117 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLSG--IEKLVNL  117 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECCCHHH--HHHHHHS
T ss_pred             hHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccc-cccccccccccccccccccccccc--ccccccc
Confidence            45778999999999999999986 5889999999999999998874 445566789999999999998743  7889999


Q ss_pred             CEEeCCCCcCCccCh-hhhcCCCCCCEEECCCCcCCccchh--------hhhhcCCCCCCEEE
Q psy3329          91 EYLMLNRCNLTYISP-SAFDNLNHLKTLELSQNKLKSHIDW--------TLVLGNLGKLDTLD  144 (694)
Q Consensus        91 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~--------~~~~~~l~~L~~L~  144 (694)
                      ++|++++|.++.+.. ..+..+++|+.|++++|++......        ...+..+|+|+.||
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999999999998743 5789999999999999987532110        01245667777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.2e-08  Score=87.48  Aligned_cols=69  Identities=23%  Similarity=0.217  Sum_probs=41.4

Q ss_pred             hhcCCCCCCEEECCCCcCCccchhhhhhcCCCCCCEEEccCCCCCCCCccccCCCCCCcEEeCCCCCCC
Q psy3329         107 AFDNLNHLKTLELSQNKLKSHIDWTLVLGNLGKLDTLDLRQSGISNLPDNVFANNTWLRNLNLAENELI  175 (694)
Q Consensus       107 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~  175 (694)
                      .+.++++|++|++++|+++.+..++..+..+++|+.|++++|.++.+....+.....|+.|++.+|.+.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            344566677777777777665555555566666777777766666655533333344555666665554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.4e-08  Score=87.12  Aligned_cols=88  Identities=23%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             hhhccCCCCCCeEECCCCCCCccCC--CCCCCCCCCCEEeCCCCcCCccChhhhcCCCCCCEEECCCCcCCccch-----
Q psy3329          57 PQFFTNLTTLNKLDLSGNPLRIIEP--GVFDPLTSLEYLMLNRCNLTYISPSAFDNLNHLKTLELSQNKLKSHID-----  129 (694)
Q Consensus        57 ~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----  129 (694)
                      +..+..+++|++|+|++|+++.+.+  ..+..+++|+.|+|++|.++.+.+-.+.+..+|+.|++++|.+.....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            4445678889999999998887643  335678899999999999988755444455678999999998874321     


Q ss_pred             hhhhhcCCCCCCEEE
Q psy3329         130 WTLVLGNLGKLDTLD  144 (694)
Q Consensus       130 ~~~~~~~l~~L~~L~  144 (694)
                      ....+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence            123567789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=2.9e-05  Score=67.37  Aligned_cols=88  Identities=15%  Similarity=0.152  Sum_probs=41.0

Q ss_pred             CCCCcEEEcCCC-CCCccchh---hhccCCCCccEEEccCcCCCcCC----cccccCCCCccEEeCCCCCCccc----ch
Q psy3329         212 ATKLRTLYLSGN-PLSAADLS---VALKPLTKLHRLSLRNCGLSRLP----ANTFHRFTCLQELDISHNPLIDA----FT  279 (694)
Q Consensus       212 ~~~L~~L~L~~n-~l~~~~~~---~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~L~~n~~~~~----~~  279 (694)
                      .+.|++|+|+++ .++.....   ..+...+.|++|++++|.++...    ...+...+.|++|+|++|.+...    +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            455555555542 23332211   12334455555555555554211    12233445566666666655542    22


Q ss_pred             hhcCCCCCCcEEECcCCCCc
Q psy3329         280 ALLSPLESLEHLDMGYSNLQ  299 (694)
Q Consensus       280 ~~~~~l~~L~~L~L~~n~l~  299 (694)
                      .++...++|++|+|++|.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHhCCcCCEEECCCCcCC
Confidence            33445555666666555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.68  E-value=2.3e-05  Score=67.96  Aligned_cols=88  Identities=13%  Similarity=0.078  Sum_probs=43.5

Q ss_pred             cCCCCCCeEECCCCCCCccCC----CCCCCCCCCCEEeCCCCcCCccC----hhhhcCCCCCCEEECCCCcCCccc----
Q psy3329          61 TNLTTLNKLDLSGNPLRIIEP----GVFDPLTSLEYLMLNRCNLTYIS----PSAFDNLNHLKTLELSQNKLKSHI----  128 (694)
Q Consensus        61 ~~l~~L~~L~Ls~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~----  128 (694)
                      ...+.|++|+|++|.+.....    ..+...+.|++|+|++|.+....    ..++...+.|++|++++|.+..++    
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            344445555555554432111    11233455666666666555421    234555566666666666544332    


Q ss_pred             -hhhhhhcCCCCCCEEEccCC
Q psy3329         129 -DWTLVLGNLGKLDTLDLRQS  148 (694)
Q Consensus       129 -~~~~~~~~l~~L~~L~L~~n  148 (694)
                       .+...+...++|+.|+++.+
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCCccEeeCcCC
Confidence             23344555666777766544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.11  E-value=0.00027  Score=60.98  Aligned_cols=65  Identities=20%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             cCCCCcEEEcCC-CCCCccchh---hhccCCCCccEEEccCcCCCcCCc----ccccCCCCccEEeCCCCCCc
Q psy3329         211 NATKLRTLYLSG-NPLSAADLS---VALKPLTKLHRLSLRNCGLSRLPA----NTFHRFTCLQELDISHNPLI  275 (694)
Q Consensus       211 ~~~~L~~L~L~~-n~l~~~~~~---~~l~~l~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~L~~n~~~  275 (694)
                      +.++|++|++++ +.++.....   ..+...++|++|++++|.++....    ..+...++++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            345555555554 234433321   122344555555555555442211    12233445555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=0.00012  Score=63.16  Aligned_cols=15  Identities=20%  Similarity=0.275  Sum_probs=6.6

Q ss_pred             CCCCCCeEECCCCCC
Q psy3329          62 NLTTLNKLDLSGNPL   76 (694)
Q Consensus        62 ~l~~L~~L~Ls~n~~   76 (694)
                      ..++|++|++++|.+
T Consensus        44 ~n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          44 TNTYVKKFSIVGTRS   58 (166)
T ss_dssp             TCCSCCEEECTTSCC
T ss_pred             cCCccCeeeccCCcc
Confidence            344444444444443

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00012  Score=69.52  Aligned_cols=40  Identities=15%  Similarity=0.217  Sum_probs=28.4

Q ss_pred             cccceeecccceeeehhhhhhh-----hHHHHHHHhhHhHhhhhh
Q psy3329         639 SKSFLTLGNFGLISVGVIILSA-----MVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       639 ~~~~iG~G~fG~VYkg~l~~g~-----~vaV~~~~~~~~~~~~~~  678 (694)
                      -.++||+|+||.||+|++.+..     +||||+.........+++
T Consensus        11 ~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~   55 (283)
T d1mqba_          11 RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVD   55 (283)
T ss_dssp             EEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHH
T ss_pred             eeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHH
Confidence            3579999999999999987542     799998755444433333

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.0001  Score=70.79  Aligned_cols=40  Identities=15%  Similarity=0.074  Sum_probs=29.5

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHhhHhHhhhhhhh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYARHLYRTKQQRIR  680 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~~~~~~~~~~~  680 (694)
                      +.||+|+||+||+|+..      +|+.||||+.........+++..
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~   64 (301)
T d1lufa_          19 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQ   64 (301)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHH
T ss_pred             EEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHH
Confidence            57999999999999863      56799999876555444444433

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.00015  Score=69.86  Aligned_cols=38  Identities=13%  Similarity=0.156  Sum_probs=26.5

Q ss_pred             cceeecccceeeehhhhhhh----hHHHHHHHhhHhHhhhhh
Q psy3329         641 SFLTLGNFGLISVGVIILSA----MVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~----~vaV~~~~~~~~~~~~~~  678 (694)
                      ++||+|+||+||+|++.++.    .||||+..........++
T Consensus        33 ~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~   74 (311)
T d1r0pa_          33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQ   74 (311)
T ss_dssp             EEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHH
T ss_pred             eEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHH
Confidence            68999999999999986543    689998754333333333

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.00016  Score=68.19  Aligned_cols=29  Identities=21%  Similarity=0.168  Sum_probs=26.0

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|++.+|+.||||+...
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~   47 (272)
T d1qpca_          19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQ   47 (272)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECT
T ss_pred             EEEecCCCcEEEEEEECCCCEEEEEEEcc
Confidence            56999999999999999888999998754

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.00015  Score=68.08  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=26.1

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|++.+|..||||+...
T Consensus        11 ~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~   39 (263)
T d1sm2a_          11 QEIGSGQFGLVHLGYWLNKDKVAIKTIRE   39 (263)
T ss_dssp             EEEECCSSCCEEEEEETTTEEEEEEECCS
T ss_pred             EEEeeCCCeEEEEEEECCCCEEEEEEECC
Confidence            57999999999999999999999998654

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.00015  Score=68.73  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=26.8

Q ss_pred             ceeecccceeeehhhh---hhhhHHHHHHHhhHhHhhhhhh
Q psy3329         642 FLTLGNFGLISVGVII---LSAMVYFSFYARHLYRTKQQRI  679 (694)
Q Consensus       642 ~iG~G~fG~VYkg~l~---~g~~vaV~~~~~~~~~~~~~~~  679 (694)
                      .||+|+||.||+|+..   ++..||||+..........++.
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~   56 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEM   56 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHH
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHH
Confidence            3999999999999764   3447999987654444433333

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.00028  Score=67.65  Aligned_cols=30  Identities=17%  Similarity=0.202  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|++ +|..||||+.....
T Consensus         9 ~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~   38 (303)
T d1vjya_           9 ESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE   38 (303)
T ss_dssp             EEEECCSSSEEEEEEE-TTEEEEEEEECGGG
T ss_pred             EEEeeCCCeEEEEEEE-CCEEEEEEEECccc
Confidence            4699999999999997 78899999875443

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.10  E-value=0.00019  Score=68.88  Aligned_cols=42  Identities=14%  Similarity=0.179  Sum_probs=26.7

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHhHhhhhhhhcc
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLYRTKQQRIRRN  682 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~~~~~~~~~~~  682 (694)
                      +.||+|+||.||+|+- .+|..||||+.........++++.+|
T Consensus        15 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E   57 (307)
T d1a06a_          15 DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENE   57 (307)
T ss_dssp             EESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHH
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHH
Confidence            6899999999999985 46789999998766655555554443

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.00018  Score=69.24  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=26.8

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHhhHhHh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYARHLYRT  674 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~~~~~  674 (694)
                      ..||+|+||.||+|+..      +++.||||+........
T Consensus        26 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~   65 (308)
T d1p4oa_          26 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR   65 (308)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHH
T ss_pred             eEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChH
Confidence            67999999999999874      46799999876544333

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.00028  Score=67.05  Aligned_cols=30  Identities=23%  Similarity=0.163  Sum_probs=25.3

Q ss_pred             cceeecccceeeehhhhh-hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL-SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~-g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+..+ |+.||||+....
T Consensus        23 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~   53 (287)
T d1opja_          23 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED   53 (287)
T ss_dssp             EETTTTTTSSEEEEEEGGGTEEEEEEECCTT
T ss_pred             eEEeeCCCeEEEEEEECCCCeEEEEEEECCc
Confidence            679999999999998764 779999986543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.00037  Score=64.90  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=26.5

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+..++..||||+....
T Consensus        10 ~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~   39 (258)
T d1k2pa_          10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEG   39 (258)
T ss_dssp             CCCCEETTEEEEEEEETTTEEEEEEEEESS
T ss_pred             EEEecCCCeEEEEEEECCCCEEEEEEECcC
Confidence            469999999999999998889999987643

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.00033  Score=67.82  Aligned_cols=31  Identities=16%  Similarity=-0.002  Sum_probs=26.1

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||+||+|+- .+|..||||+.....
T Consensus        12 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~   43 (322)
T d1s9ja_          12 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEI   43 (322)
T ss_dssp             EEEECCSSCCEEEEEETTTTEEEEEEEEECCC
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEChhh
Confidence            6799999999999994 578899999875443

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=95.67  E-value=0.00031  Score=66.80  Aligned_cols=31  Identities=6%  Similarity=0.009  Sum_probs=27.2

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||+||+|+-.+|..||||+.....
T Consensus         8 ~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~   38 (286)
T d1ob3a_           8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEK   38 (286)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEEECCSS
T ss_pred             cEEecCCCcEEEEEEeCCCCEEEEEEEehhh
Confidence            4699999999999999999999999975543

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.00037  Score=67.08  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=27.4

Q ss_pred             cceeecccceeeehhh------hhhhhHHHHHHHhhHhHhhh
Q psy3329         641 SFLTLGNFGLISVGVI------ILSAMVYFSFYARHLYRTKQ  676 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l------~~g~~vaV~~~~~~~~~~~~  676 (694)
                      +.||+|+||.||+|++      .+|+.||||+..........
T Consensus        29 ~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~   70 (311)
T d1t46a_          29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTER   70 (311)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHH
T ss_pred             eEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHH
Confidence            5899999999999975      45568999987654443333

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.00034  Score=65.71  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=27.0

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHhHhhhhhhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLYRTKQQRIR  680 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~~~~~~~~~  680 (694)
                      +.||+|+||.||+|+- .+|..||||+..........+++.
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~   51 (271)
T d1nvra_          11 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIK   51 (271)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHH
Confidence            6899999999999985 578899999876544433333333

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.00044  Score=66.18  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=25.3

Q ss_pred             cceeecccceeeehhhh------hhhhHHHHHHHhhHhHhhhh
Q psy3329         641 SFLTLGNFGLISVGVII------LSAMVYFSFYARHLYRTKQQ  677 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~------~g~~vaV~~~~~~~~~~~~~  677 (694)
                      +.||+|+||.||+|+..      +|+.||||+.........++
T Consensus        19 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~   61 (299)
T d1ywna1          19 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHR   61 (299)
T ss_dssp             EEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHH
T ss_pred             eEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHH
Confidence            68999999999999753      34689999876554444333

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.00044  Score=66.03  Aligned_cols=30  Identities=17%  Similarity=0.268  Sum_probs=22.4

Q ss_pred             cceeecccceeeehhhh-hhh---hHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSA---MVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~---~vaV~~~~~~  670 (694)
                      ++||+|+||.||+|+.. +|.   .||||.....
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~   65 (299)
T d1jpaa_          32 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG   65 (299)
T ss_dssp             EEEEECSSSEEEEEEECC---CCEEEEEEECCSS
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcc
Confidence            68999999999999874 333   6888876443

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.00041  Score=67.88  Aligned_cols=30  Identities=13%  Similarity=0.255  Sum_probs=22.7

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      +.||+|+||+||+|+ ..+|+.||||+....
T Consensus        14 ~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~   44 (345)
T d1pmea_          14 SYIGEGAYGMVCSAYDNVNKVRVAIKKISPF   44 (345)
T ss_dssp             EECC---CCCEEEEEETTTCSEEEEEEECCT
T ss_pred             EEEeeccCeEEEEEEECCCCcEEEEEEEehh
Confidence            689999999999997 578999999986543

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.00055  Score=63.86  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|++ .|+.||||+...
T Consensus        13 ~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~   40 (262)
T d1byga_          13 QTIGKGEFGDVMLGDY-RGNKVAVKCIKN   40 (262)
T ss_dssp             EEEEECSSCEEEEEEE-TTEEEEEEECCC
T ss_pred             EEEecCCCeEEEEEEE-CCeEEEEEEECc
Confidence            5699999999999998 578999999854

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.00055  Score=64.16  Aligned_cols=31  Identities=6%  Similarity=-0.065  Sum_probs=25.9

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|+ ..+|..||||+.....
T Consensus        10 ~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~   41 (269)
T d2java1          10 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGS   41 (269)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCTT
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEChhh
Confidence            579999999999997 4678899999865443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.00034  Score=66.75  Aligned_cols=30  Identities=10%  Similarity=0.033  Sum_probs=25.4

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      +.||+|+||+||+|+- .+|..||||+....
T Consensus         8 ~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~   38 (292)
T d1unla_           8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLD   38 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESS
T ss_pred             eEEecCcCeEEEEEEECCCCcEEEEEEEehh
Confidence            4799999999999994 67889999997544

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.31  E-value=0.00074  Score=63.68  Aligned_cols=31  Identities=16%  Similarity=0.225  Sum_probs=26.3

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+ ..+|+.||||+.....
T Consensus        13 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~   44 (277)
T d1o6ya_          13 EILGFGGMSEVHLARDLRLHRDVAVKVLRADL   44 (277)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTT
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEchhh
Confidence            589999999999998 5689999999875433

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.27  E-value=0.00055  Score=65.18  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=24.8

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+ ..+|+.||||+...
T Consensus        11 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~   40 (293)
T d1csna_          11 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPR   40 (293)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEEC
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            579999999999998 45788999998644

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.00037  Score=66.44  Aligned_cols=32  Identities=13%  Similarity=0.036  Sum_probs=26.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~  672 (694)
                      +.||+|+||+||+|+- .+|..||||+......
T Consensus        16 ~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~   48 (293)
T d1jksa_          16 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRT   48 (293)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSS
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEEhhhc
Confidence            6799999999999985 5788999998765443

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.00076  Score=65.07  Aligned_cols=30  Identities=13%  Similarity=0.030  Sum_probs=24.3

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      +.||+|+||+||+|+- .+|..||||+....
T Consensus        16 ~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~   46 (318)
T d3blha1          16 AKIGQGTFGEVFKARHRKTGQKVALKKVLME   46 (318)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEC---
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEehh
Confidence            5799999999999994 68999999976443

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0005  Score=64.70  Aligned_cols=30  Identities=20%  Similarity=0.278  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      .+||+|+||.||+|+- .+|..||||+....
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~   40 (273)
T d1xwsa_          10 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKD   40 (273)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGG
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehH
Confidence            5799999999999984 67889999986544

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0009  Score=62.89  Aligned_cols=38  Identities=13%  Similarity=0.223  Sum_probs=26.7

Q ss_pred             cceeecccceeeehhhhh----hhhHHHHHHHhhHhHhhhhh
Q psy3329         641 SFLTLGNFGLISVGVIIL----SAMVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~----g~~vaV~~~~~~~~~~~~~~  678 (694)
                      ..||+|+||.||+|+...    +..||||+.........+++
T Consensus        13 ~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~   54 (273)
T d1mp8a_          13 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREK   54 (273)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHH
T ss_pred             EEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHH
Confidence            579999999999998743    23688887655444443333

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0011  Score=62.64  Aligned_cols=30  Identities=20%  Similarity=0.107  Sum_probs=26.4

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+..++..||||+....
T Consensus        23 ~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~   52 (285)
T d1fmka3          23 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPG   52 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEECCTT
T ss_pred             eEEeeCCCeEEEEEEECCCCEEEEEEECcc
Confidence            569999999999999999889999987533

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0006  Score=66.97  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=24.3

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||+||+|+ ..+|..||||+.....
T Consensus        23 ~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~   54 (355)
T d2b1pa1          23 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF   54 (355)
T ss_dssp             EECSCC--CEEEEEEETTTTEEEEEEEEESTT
T ss_pred             EEeecCcCeEEEEEEECCCCCEEEEEEEChhh
Confidence            589999999999998 4578999999976543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.98  E-value=0.00094  Score=65.56  Aligned_cols=33  Identities=12%  Similarity=0.098  Sum_probs=27.1

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLYR  673 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~~  673 (694)
                      ++||+|+||.||+|+- .+|..||||+.......
T Consensus        10 ~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~   43 (364)
T d1omwa3          10 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIK   43 (364)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHH
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEchHHcc
Confidence            5899999999999985 46889999987655443

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.00078  Score=63.39  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             cceeecccceeeehhhhh---hhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVIIL---SAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~---g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|++.+   +..||||+....
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~   45 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNE   45 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC--
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChh
Confidence            579999999999998764   347999987543

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0012  Score=61.75  Aligned_cols=30  Identities=13%  Similarity=0.100  Sum_probs=24.2

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||+||+|+-. +|..||||+....
T Consensus        15 ~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~   45 (270)
T d1t4ha_          15 IEIGRGSFKTVYKGLDTETTVEVAWCELQDR   45 (270)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGG
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchh
Confidence            36999999999999864 5678999976544

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.00075  Score=64.38  Aligned_cols=31  Identities=10%  Similarity=0.125  Sum_probs=25.0

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||+||+|+ ..+|+.||||+.....
T Consensus         8 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~   39 (298)
T d1gz8a_           8 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDT   39 (298)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEC---
T ss_pred             cEEecCcCeEEEEEEECCCCCEEEEEEEehhh
Confidence            579999999999998 5789999999875543

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.00088  Score=65.57  Aligned_cols=30  Identities=17%  Similarity=0.148  Sum_probs=26.0

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||+||+|+ ..+|..||||+....
T Consensus        24 ~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~   54 (348)
T d2gfsa1          24 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRP   54 (348)
T ss_dssp             EECGGGTTSSEEEEEETTTTEEEEEEECSCT
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEECch
Confidence            579999999999998 678999999987543

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0011  Score=63.74  Aligned_cols=29  Identities=21%  Similarity=0.191  Sum_probs=20.6

Q ss_pred             cceeecccceeeehhh-hhhh----hHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSA----MVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~----~vaV~~~~~  669 (694)
                      ++||+|+||.||+|+. .+|.    .||||....
T Consensus        15 ~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~   48 (317)
T d1xkka_          15 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELRE   48 (317)
T ss_dssp             EEEEECSSEEEEEEEECC----CCEEEEEEEECC
T ss_pred             eEEecCCCeEEEEEEEcCCCCEEEEEEEEEEecc
Confidence            6899999999999986 3565    467776543

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.82  E-value=0.00099  Score=63.74  Aligned_cols=30  Identities=17%  Similarity=0.166  Sum_probs=25.4

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+ ..+|..||||+....
T Consensus        21 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~   51 (309)
T d1u5ra_          21 REIGHGSFGAVYFARDVRNSEVVAIKKMSYS   51 (309)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEECC
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEchh
Confidence            569999999999997 567889999986543

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.00082  Score=64.46  Aligned_cols=31  Identities=16%  Similarity=0.117  Sum_probs=24.0

Q ss_pred             ccceeecccceeeehhhhhh-h--hHHHHHHHhh
Q psy3329         640 KSFLTLGNFGLISVGVIILS-A--MVYFSFYARH  670 (694)
Q Consensus       640 ~~~iG~G~fG~VYkg~l~~g-~--~vaV~~~~~~  670 (694)
                      .++||+|+||.||+|+..+. .  .||||.....
T Consensus        15 ~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~   48 (309)
T d1fvra_          15 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY   48 (309)
T ss_dssp             EEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             EEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcc
Confidence            46899999999999998654 2  5788775433

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.00081  Score=64.17  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=20.8

Q ss_pred             cceeecccceeeehhhh--------hhhhHHHHHHHhhHhHh
Q psy3329         641 SFLTLGNFGLISVGVII--------LSAMVYFSFYARHLYRT  674 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~--------~g~~vaV~~~~~~~~~~  674 (694)
                      +.||+|+||.||+|+..        +++.||||+........
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~   60 (299)
T d1fgka_          19 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK   60 (299)
T ss_dssp             EECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHH
T ss_pred             eEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChH
Confidence            57999999999999853        33579999876554433

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=94.77  E-value=0.0012  Score=63.88  Aligned_cols=33  Identities=9%  Similarity=0.014  Sum_probs=26.7

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLYR  673 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~~  673 (694)
                      ..||+|+||+||+|+- .+|..||||+......+
T Consensus        41 ~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~   74 (328)
T d3bqca1          41 RKLGRGKYSEVFEAINITNNEKVVVKILKPVKKK   74 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSSCHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEECHHHHH
Confidence            6799999999999985 57889999986654333

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0017  Score=60.95  Aligned_cols=27  Identities=19%  Similarity=0.127  Sum_probs=22.6

Q ss_pred             cceeecccceeeehhhhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVIILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g~~vaV~~~~~  669 (694)
                      +.||+|+||.||+|++..  .||||+...
T Consensus        14 ~~lG~G~fg~Vy~~~~~~--~vAvK~~~~   40 (276)
T d1uwha_          14 QRIGSGSFGTVYKGKWHG--DVAVKMLNV   40 (276)
T ss_dssp             SEEEECSSCEEEEEESSS--EEEEEECCC
T ss_pred             EEEeeCCCcEEEEEEECC--EEEEEEEEc
Confidence            579999999999999854  489998743

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.00084  Score=65.70  Aligned_cols=30  Identities=13%  Similarity=0.243  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~  670 (694)
                      ++||+|+||+||+|+-. .|..||||+....
T Consensus        26 k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~   56 (350)
T d1q5ka_          26 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQD   56 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC
T ss_pred             eEEeeCcCeEEEEEEECCCCCEEEEEEECcc
Confidence            58999999999999964 6889999987543

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.58  E-value=0.0018  Score=61.72  Aligned_cols=29  Identities=21%  Similarity=0.190  Sum_probs=24.7

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      ..||+|+||.||+|+- .+|..||||+...
T Consensus        13 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~   42 (299)
T d1ckia_          13 RKIGSGSFGDIYLGTDIAAGEEVAIKLECV   42 (299)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEES
T ss_pred             EEEeeCCCcEEEEEEECCCCCEEEEEEEch
Confidence            5799999999999974 6788999997554

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.58  E-value=0.002  Score=60.41  Aligned_cols=29  Identities=7%  Similarity=-0.064  Sum_probs=25.2

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~  669 (694)
                      +.||+|+||+||+|+- .+|+.||||+...
T Consensus         9 ~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~   38 (277)
T d1phka_           9 EILGRGVSSVVRRCIHKPTCKEYAVKIIDV   38 (277)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEET
T ss_pred             eEEecCcCeEEEEEEECCCCCEEEEEEEec
Confidence            6899999999999984 6888999998654

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0015  Score=61.65  Aligned_cols=31  Identities=13%  Similarity=0.133  Sum_probs=26.2

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      .+||+|+||.||+|+- .+|..||||+.....
T Consensus        14 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~   45 (288)
T d1uu3a_          14 KILGEGSFSTVVLARELATSREYAIKILEKRH   45 (288)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHH
Confidence            6899999999999985 578899999876543

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0014  Score=61.95  Aligned_cols=30  Identities=10%  Similarity=0.071  Sum_probs=25.4

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+ ..+|..||||+....
T Consensus        26 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~   56 (293)
T d1yhwa1          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQ   56 (293)
T ss_dssp             EECCCSSSCEEEEEEBTTTCCEEEEEEEEGG
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEecc
Confidence            469999999999997 467899999987544

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.002  Score=61.81  Aligned_cols=32  Identities=13%  Similarity=0.233  Sum_probs=26.6

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~~  672 (694)
                      +.||+|+||+||+|+-. +|..||||+......
T Consensus         8 ~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~   40 (320)
T d1xjda_           8 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVV   40 (320)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHH
T ss_pred             eEEecCCCcEEEEEEECCCCCEEEEEEEchhhc
Confidence            57999999999999864 577999999866543

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.0021  Score=63.13  Aligned_cols=30  Identities=13%  Similarity=0.125  Sum_probs=25.7

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||+||+|+- .+|..||||+....
T Consensus        19 ~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~   49 (362)
T d1q8ya_          19 RKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD   49 (362)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEecc
Confidence            6899999999999984 68999999986543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.0011  Score=64.67  Aligned_cols=30  Identities=20%  Similarity=0.130  Sum_probs=19.6

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||+||+|+ ..+|..||||+....
T Consensus        24 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~   54 (346)
T d1cm8a_          24 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRP   54 (346)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSST
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEchh
Confidence            479999999999998 567999999987643

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.0018  Score=61.20  Aligned_cols=30  Identities=17%  Similarity=0.060  Sum_probs=25.1

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+- .+|..||||+....
T Consensus        18 ~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~   48 (288)
T d2jfla1          18 GELGDGAFGKVYKAQNKETSVLAAAKVIDTK   48 (288)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECS
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEECcC
Confidence            4699999999999985 56889999987543

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=94.06  E-value=0.0022  Score=62.37  Aligned_cols=30  Identities=17%  Similarity=0.112  Sum_probs=25.5

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+- .+|..||||+....
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~   62 (350)
T d1koaa2          32 EELGTGAFGVVHRVTERATGNNFAAKFVMTP   62 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECCC
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEccc
Confidence            5799999999999984 67889999987543

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.0021  Score=59.74  Aligned_cols=31  Identities=13%  Similarity=0.104  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhhh-hhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVII-LSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~-~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||.||+|+-. +|..||||+.....
T Consensus        12 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~   43 (263)
T d2j4za1          12 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQ   43 (263)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEecCCCcEEEEEEECCCCcEEEEEEEchHH
Confidence            58999999999999874 67899999876544

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.0018  Score=62.51  Aligned_cols=38  Identities=13%  Similarity=0.125  Sum_probs=24.5

Q ss_pred             cceeecccceeeehhhhhh------hhHHHHHHHhhHhHhhhhh
Q psy3329         641 SFLTLGNFGLISVGVIILS------AMVYFSFYARHLYRTKQQR  678 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~g------~~vaV~~~~~~~~~~~~~~  678 (694)
                      ..||+|+||.||+|+....      ..||||+.........+++
T Consensus        43 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~   86 (325)
T d1rjba_          43 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREA   86 (325)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHH
T ss_pred             eEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHH
Confidence            6899999999999987542      2689988755444443333

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=93.90  E-value=0.0024  Score=62.23  Aligned_cols=30  Identities=20%  Similarity=0.222  Sum_probs=25.6

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~~  670 (694)
                      ..||+|+||.||+|+ ..+|..||||+....
T Consensus        35 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~   65 (352)
T d1koba_          35 EELGSGAFGVVHRCVEKATGRVFVAKFINTP   65 (352)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEECCc
Confidence            579999999999998 467899999986543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.0031  Score=60.89  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=27.6

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLYR  673 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~~  673 (694)
                      ++||+|+||.||+|+- .+|..||||+..+....
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~   44 (337)
T d1o6la_          11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVII   44 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEchhhcc
Confidence            5799999999999984 67889999998765543

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.82  E-value=0.0027  Score=60.75  Aligned_cols=31  Identities=13%  Similarity=0.141  Sum_probs=26.1

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+- .+|..||||+.....
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~   41 (316)
T d1fota_          10 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEI   41 (316)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHH
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEchHH
Confidence            5799999999999985 578899999875543

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.004  Score=60.13  Aligned_cols=29  Identities=14%  Similarity=0.021  Sum_probs=24.7

Q ss_pred             cceeecccceeeehh-hhhhhhHHHHHHHh
Q psy3329         641 SFLTLGNFGLISVGV-IILSAMVYFSFYAR  669 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~-l~~g~~vaV~~~~~  669 (694)
                      .+||+|+||+||+|+ ..+|..||||+...
T Consensus        18 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~   47 (335)
T d2ozaa1          18 QVLGLGINGKVLQIFNKRTQEKFALKMLQD   47 (335)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEC
T ss_pred             EEeeeccCeEEEEEEECCCCCEEEEEEECC
Confidence            479999999999997 46788999998643

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.0023  Score=61.56  Aligned_cols=30  Identities=10%  Similarity=0.114  Sum_probs=24.4

Q ss_pred             cceeecccceeeehhh----hhhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI----ILSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l----~~g~~vaV~~~~~~  670 (694)
                      +.||+|+||.||+|+-    ..|++||||+..+.
T Consensus        30 ~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~   63 (322)
T d1vzoa_          30 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKA   63 (322)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEEEEESEE
T ss_pred             EEEecCCCeEEEEEEECccCCCCcEEEEEEEehH
Confidence            5899999999999964    24779999987543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.32  E-value=0.0043  Score=60.30  Aligned_cols=32  Identities=13%  Similarity=0.091  Sum_probs=26.6

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhHh
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHLY  672 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~~  672 (694)
                      +.||+|+||.||+|+- .+|..||||+......
T Consensus        47 ~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~   79 (350)
T d1rdqe_          47 KTLGTGSFGRVMLVKHKESGNHYAMKILDKQKV   79 (350)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH
T ss_pred             EEeecCcCcEEEEEEECCCCCEEEEEEEchHHc
Confidence            5899999999999985 5789999998765443

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.0034  Score=58.64  Aligned_cols=31  Identities=19%  Similarity=0.191  Sum_probs=17.1

Q ss_pred             cceeecccceeeehhhhh--hh--hHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVIIL--SA--MVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l~~--g~--~vaV~~~~~~~  671 (694)
                      ..||+|+||.||+|+...  +.  .||||+.....
T Consensus        14 ~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~   48 (273)
T d1u46a_          14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV   48 (273)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC-----
T ss_pred             EEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhh
Confidence            469999999999998743  22  78999876543

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.0044  Score=59.45  Aligned_cols=31  Identities=19%  Similarity=0.124  Sum_probs=25.9

Q ss_pred             cceeecccceeeehhh-hhhhhHHHHHHHhhH
Q psy3329         641 SFLTLGNFGLISVGVI-ILSAMVYFSFYARHL  671 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~~g~~vaV~~~~~~~  671 (694)
                      +.||+|+||+||+|+- .+|..||||+.....
T Consensus        11 ~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~   42 (321)
T d1tkia_          11 EDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG   42 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCT
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEcCCc
Confidence            5799999999999985 467899999876543

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.0029  Score=60.40  Aligned_cols=30  Identities=10%  Similarity=-0.022  Sum_probs=24.0

Q ss_pred             cceeecccceeeehhh-h-hhhhHHHHHHHhh
Q psy3329         641 SFLTLGNFGLISVGVI-I-LSAMVYFSFYARH  670 (694)
Q Consensus       641 ~~iG~G~fG~VYkg~l-~-~g~~vaV~~~~~~  670 (694)
                      ..||+|+||+||+|+- . +|..||||+....
T Consensus        13 ~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~   44 (305)
T d1blxa_          13 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQ   44 (305)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEE
T ss_pred             EEEecccCeEEEEEEEECCCCEEEEEEEEehh
Confidence            5799999999999974 3 4668999986543