Psyllid ID: psy3330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
Protein Sequence
MNYFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSFMLLLLSSGVICILMYFIYRKRALWKNKINRNLKHQSSYVDNCMNSHPTPILMLYSTGDSDAI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccccccccccEEcccccEEEEcccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccccEEccccccccccccccHHccccccEEEcccccccccccHHccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccccccccccccccEEEEEccccccccccccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEccccccccccHHHHccccHHcccEEEccccccccccccccccccccccEEEEEEEEEcccHHHcccccccccEEEccccccccccHHHHcccccccEEEcccccccEEccccccccccccEEEcccccccccccHHHcccccHHEEEccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccEEEcccccccccccHHHcccccccEEccccccccccccHHHccHHHHHHHHHHHHHHHHHcHcccccHcHcccccccccccccccccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
MNYFLTCIFLILALTKLnkaicpsrcqcfdqKLEAsctdaglevvpiqlnpevqTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKElktldlsynkISVINKTAFRDTLHLELLILSfnnityfedseIFSSLKSLRIlkldnnqildvpnnvlsnlphqslhYLYLNENLIetvldnsfpftltNLHTLALSSNIISFINESSFVTLRTLHSLdlsnnnlsaiptkqLSKLSALVNldlsgnnfsnidSVAFKSLFSLKLVKInlipnldsidqplslslpplllslsiplafsltplgtlkcdrldlsgnnfsnidSVAFKSLFSLKLVKInlipnldsidqrafvdnIQLETVIINenmnlkqlpsklfqgntnlksvslkgnslshleashfplerisfldlsdnplhcdcnlLWLWILVQLQVKSTMETTTVAYEmtsntsispgttteAQRVDRIIKNNHSLTIVLNnlkcssppdikglevkavpensvhcesnTMLYVLSFMLLLLSSGVICILMYFIYRKRALWKNKINRNLKHqssyvdncmnshptpilmlystgdsdai
Flexible Loop (DISEMBL)
MNYFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYemtsntsispgtttEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSFMLLLLSSGVICILMYFIYRKRALWKNKINRNLKHQSSYVDNCMNSHPTPILmlystgdsdai
Low Complexity Region (SEG)
MNYFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALssniisfinessfVTLRTLHsldlsnnnlsAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQplslslpplllslsiplAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNllwlwilvqlqvKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMlyvlsfmllllssGVICILMYFIYRKRALWKNKINRNLKHQSSYVDNCMNSHPTPILMLYSTGDSDAI
Disordered region (IsUnstruct)
**YFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLK*V*L****LSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEM***************RVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSFMLLLLSSGVICILMYFIYRKRALWKNKINRNLKHQSSYVDNCMNSHPTPILMLY********
Disordered Region (DISOPRED)
MNYFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSFMLLLLSSGVICILMYFIYRKRALWKNKINRNLKHQSSYVDNCMNSHPTPILMLYSTGD****
Disordered Region (DISEMBL)
MNYFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSFMLLLLSSGVICILMYFIYRKRALWKNKINRNLKHQSSYVDNCMNSHPTPILMLYSTGDSDAI
Disordered Region (DISPRO)
MNYFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSFMLLLLSSGVICILMYFIYRKRALWKNKINRNLKHQSSYVDNCMNSHPTPILMLYSTG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNYFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSFMLLLLSSGVICILMYFIYRKRALWKNKINRNLKHQSSYVDNCMNSHPTPILMLYSTGDSDAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	608	2.2.26 [Sep-21-2011]
Q7L985	606	Leucine-rich repeat and i	yes	N/A	0.519	0.521	0.318	5e-24
Q3URE9	606	Leucine-rich repeat and i	yes	N/A	0.506	0.508	0.330	6e-24
Q50L44	613	Leucine-rich repeat and i	no	N/A	0.508	0.504	0.302	3e-23
Q9D1T0	614	Leucine-rich repeat and i	no	N/A	0.508	0.503	0.302	4e-23
Q9N008	614	Leucine-rich repeat and i	N/A	N/A	0.508	0.503	0.302	5e-23
P35858	605	Insulin-like growth facto	no	N/A	0.820	0.824	0.265	6e-23
Q5RDJ4	614	Leucine-rich repeat and i	no	N/A	0.508	0.503	0.302	9e-23
Q96FE5	620	Leucine-rich repeat and i	no	N/A	0.508	0.498	0.302	1e-22
O02833	605	Insulin-like growth facto	N/A	N/A	0.669	0.672	0.275	1e-22
Q7L0X0	811	TLR4 interactor with leuc	no	N/A	0.463	0.347	0.294	5e-22

>sp|Q7L985|LIGO2_HUMAN Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2 OS=Homo sapiens GN=LINGO2 PE=1 SV=1

 Score =  113 bits (282), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 173/349 (49%), Gaps = 33/349 (9%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           E K LDLS N++  +N   F     LE + LS N I   E    F++L +LR L+L  N+
Sbjct: 58  ETKILDLSKNRLKSVNPEEFISYPLLEEIDLSDNIIANVEPGA-FNNLFNLRSLRLKGNR 116

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           +  VP  V + L   +L  L ++EN I  +LD  F   L NL +L +  N + +I+  +F
Sbjct: 117 LKLVPLGVFTGL--SNLTKLDISENKIVILLDYMFQ-DLHNLKSLEVGDNDLVYISHRAF 173

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
             L +L  L L   NL+A+PT+ LS L +L++L L   N +N+   AFK LF LK ++I+
Sbjct: 174 SGLLSLEQLTLEKCNLTAVPTEALSHLRSLISLHLKHLNINNMPVYAFKRLFHLKHLEID 233

Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
             P LD +                         L  L    L ++  N S +  +AFK L
Sbjct: 234 YWPLLDMMPA---------------------NSLYGLNLTSLSVTNTNLSTVPFLAFKHL 272

Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             L  + ++  P + +I+   F D I+L+ + I     L+ +    FQG   L+ +++  
Sbjct: 273 VYLTHLNLSYNP-ISTIEAGMFSDLIRLQELHI-VGAQLRTIEPHSFQGLRFLRVLNVSQ 330

Query: 423 NSLSHLEASHFPLER-ISFLDLSDNPLHCDCNLLWLWILVQLQVKSTME 470
           N L  LE + F   R +  L +++NPL CDC LLW+     LQ + T++
Sbjct: 331 NLLETLEENVFSSPRALEVLSINNNPLACDCRLLWI-----LQRQPTLQ 374

Homo sapiens (taxid: 9606)

>sp|Q3URE9|LIGO2_MOUSE Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2 OS=Mus musculus GN=Lingo2 PE=2 SV=1

 Score =  112 bits (281), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 169/336 (50%), Gaps = 28/336 (8%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           E K LDLS N++  IN   F     LE + LS N I   E    F++L +LR L+L  N+
Sbjct: 58  ETKILDLSKNRLKSINPEEFISYPLLEEIDLSDNIIANVEPGA-FNNLFNLRSLRLKGNR 116

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           +  VP  V + L   +L  L ++EN I  +LD  F   L NL +L +  N + +I+  +F
Sbjct: 117 LKLVPLGVFTGL--SNLTKLDISENKIVILLDYMFQ-DLHNLKSLEVGDNDLVYISHRAF 173

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
             L +L  L L   NL+A+PT+ LS L +L+ L L   N +N+   AFK LF LK ++I+
Sbjct: 174 SGLLSLEQLTLEKCNLTAVPTEALSHLRSLIALHLKHLNINNMPVYAFKRLFHLKNLEID 233

Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
             P LD             L+  +     +LT         L ++  N S +  +AFK L
Sbjct: 234 YWPLLD-------------LMPANSLYGLNLT--------SLSITNTNLSTVPFLAFKHL 272

Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             L  + ++  P + +I+   F D I+L+ + I     L+ +    FQG   L+ +++  
Sbjct: 273 VYLTHLNLSYNP-ISTIEAGMFSDLIRLQELHI-VGAQLRTIEPHSFQGLRFLRVLNVSQ 330

Query: 423 NSLSHLEASHFPLER-ISFLDLSDNPLHCDCNLLWL 457
           N L  LE + F   R +  L +++NPL CDC LLWL
Sbjct: 331 NLLETLEENVFSSPRALEVLSINNNPLACDCRLLWL 366

Mus musculus (taxid: 10090)

>sp|Q50L44|LIGO1_CHICK Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 OS=Gallus gallus GN=LINGO1 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 172/337 (51%), Gaps = 28/337 (8%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           E + LDL  N+I  +N+  F +  HLE L L+ N I+  E    F++L +LR L L +N+
Sbjct: 65  ETRQLDLGKNRIKTLNQDEFANYPHLEELELNENIISAIEPGA-FNNLFNLRTLGLRSNR 123

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           +  +P  V + L   +L  L ++EN I  +LD  F   L NL +L +  N + +I+  +F
Sbjct: 124 LKLIPLGVFTGL--SNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAF 180

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
             L +L  L L   NL++IPT+ LS L  L+ L L   N + I   +FK L+ LK+++I+
Sbjct: 181 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 240

Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
             P LD+             ++ +     +LT L    C        N ++I  V+ + L
Sbjct: 241 HWPYLDT-------------MTSNCLYGLNLTSLSITHC--------NLTSIPYVSVRHL 279

Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             L+ + ++  P + +I+     D ++L+ + +     L  +    F+G   L+ +++ G
Sbjct: 280 VYLRFLNLSYNP-IVTIEGSMLHDLLRLQEIQL-VGGQLTTVEPFAFRGLNYLRILNVSG 337

Query: 423 NSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLW 458
           N L+ LE S F  +  +  L L +NPL CDC LLW++
Sbjct: 338 NLLTTLEESAFHSVGNLETLILDNNPLACDCRLLWVF 374

Functional component of the Nogo receptor signaling complex (RTN4R/NGFR) in RhoA activation responsible for some inhibition of axonal regeneration by myelin-associated factors. Is also an important negative regulator of oligodentrocyte differentiation and axonal myelination.

Gallus gallus (taxid: 9031)

>sp|Q9D1T0|LIGO1_MOUSE Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 OS=Mus musculus GN=Lingo1 PE=1 SV=1

 Score =  110 bits (274), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 170/337 (50%), Gaps = 28/337 (8%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           E + LDL  N+I  +N+  F    HLE L L+ N ++  E    F++L +LR L L +N+
Sbjct: 66  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNR 124

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           +  +P  V + L   +L  L ++EN I  +LD  F   L NL +L +  N + +I+  +F
Sbjct: 125 LKLIPLGVFTGL--SNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAF 181

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
             L +L  L L   NL++IPT+ LS L  L+ L L   N + I   +FK L+ LK+++I+
Sbjct: 182 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 241

Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
             P LD++        P  L  L+      LT L    C        N + +  +A + L
Sbjct: 242 HWPYLDTMT-------PNCLYGLN------LTSLSITHC--------NLTAVPYLAVRHL 280

Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             L+ + ++  P + +I+     + ++L+ + +     L  +    F+G   L+ +++ G
Sbjct: 281 VYLRFLNLSYNP-IGTIEGSMLHELLRLQEIQL-VGGQLAVVEPYAFRGLNYLRVLNVSG 338

Query: 423 NSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLW 458
           N L+ LE S F  +  +  L L  NPL CDC LLW++
Sbjct: 339 NQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVF 375

Functional component of the Nogo receptor signaling complex (RTN4R/NGFR) in RhoA activation responsible for some inhibition of axonal regeneration by myelin-associated factors. Is also an important negative regulator of oligodentrocyte differentiation and axonal myelination (By similarity). Acts in conjunction with RTN4 and RTN4R in regulating neuronal precursor cell motility during cortical development.

Mus musculus (taxid: 10090)

>sp|Q9N008|LIGO1_MACFA Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 OS=Macaca fascicularis GN=LINGO1 PE=2 SV=1

 Score =  109 bits (273), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 170/337 (50%), Gaps = 28/337 (8%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           E + LDL  N+I  +N+  F    HLE L L+ N ++  E    F++L +LR L L +N+
Sbjct: 66  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNR 124

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           +  +P  V + L   +L  L ++EN I  +LD  F   L NL +L +  N + +I+  +F
Sbjct: 125 LKLIPLGVFTGL--SNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAF 181

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
             L +L  L L   NL++IPT+ LS L  L+ L L   N + I   +FK L+ LK+++I+
Sbjct: 182 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 241

Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
             P LD++        P  L  L      +LT L    C        N + +  +A + L
Sbjct: 242 HWPYLDTMT-------PNCLYGL------NLTSLSITHC--------NLTAVPYLAVRHL 280

Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             L+ + ++  P + +I+     + ++L+ + +     L  +    F+G   L+ +++ G
Sbjct: 281 VYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQL-VGGQLAMVEPYAFRGLNYLRVLNVSG 338

Query: 423 NSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLW 458
           N L+ LE S F  +  +  L L  NPL CDC LLW++
Sbjct: 339 NQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 375

Functional component of the Nogo receptor signaling complex (RTN4R/NGFR) in RhoA activation responsible for some inhibition of axonal regeneration by myelin-associated factors. Is also an important negative regulator of oligodentrocyte differentiation and axonal myelination. Acts in conjunction with RTN4 and RTN4R in regulating neuronal precursor cell motility during cortical development.

Macaca fascicularis (taxid: 9541)

>sp|P35858|ALS_HUMAN Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1

 Score =  109 bits (273), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 151/569 (26%), Positives = 242/569 (42%), Gaps = 70/569 (12%)

Query: 22  CPSRCQC-FDQ---KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-------YTL 70
           CP+ C C +D    +L   C+   L  +P  +    Q + L  N +S+V         +L
Sbjct: 41  CPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSL 100

Query: 71  SFY----IELRSLD--------------LSVNKINVLGSHNFEYQNKLLNLNISYNEISA 112
            F      +L SL+              L  N++  L    F +   L +L +S N +S 
Sbjct: 101 GFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSR 160

Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKS 172
           L    F+GL  L  L+L +N ++V+   AFR    L  L+L+ N + Y + + +FS L  
Sbjct: 161 LEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPA-LFSGLAE 219

Query: 173 LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
           LR L L  N +  +  NV   LP   L  LYL+ NLI  V   +F   L  L  L LS N
Sbjct: 220 LRELDLSRNALRAIKANVFVQLPR--LQKLYLDRNLIAAVAPGAF-LGLKALRWLDLSHN 276

Query: 233 IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKS 292
            ++ + E +F  L  L  L LS+N ++++  +    L  L  L L  N    +   +F+ 
Sbjct: 277 RVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEG 336

Query: 293 LFSLKLVKINLIPNLDSIDQPLSLSLPPL-LLSLSIPLAFSLTP---LGTLKCDRLDLSG 348
           L  L+++ ++    L  +     L L  + +++LS     +L      G  K   L L G
Sbjct: 337 LGQLEVLTLD-HNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEG 395

Query: 349 NNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS 406
           +    I    F  L  L+   +K N    L  I++++     +L  + +  N  L  LP 
Sbjct: 396 SCLGRIRPHTFTGLSGLRRLFLKDN---GLVGIEEQSLWGLAELLELDLTSN-QLTHLPH 451

Query: 407 KLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
           +LFQG   L+ + L  N L+ L A    PL+R  +LD+S N L    N L L  L +L+ 
Sbjct: 452 RLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSL-LAPLGRLRY 510

Query: 466 KS---------TMETTTVAYEMTSNTSISPGTTTEAQR---------VDRIIK------N 501
            S         T +   +            G   +A R         V R ++      +
Sbjct: 511 LSLRNNSLRTFTPQPPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFVQAICEGDD 570

Query: 502 NHSLTIVLNNLKCSSPPDIKGLEVKAVPE 530
                   NN+ C+SPP++ GL+++ + E
Sbjct: 571 CQPPAYTYNNITCASPPEVVGLDLRDLSE 599

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Homo sapiens (taxid: 9606)

>sp|Q5RDJ4|LIGO1_PONAB Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 OS=Pongo abelii GN=LINGO1 PE=2 SV=1

 Score =  108 bits (271), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 170/337 (50%), Gaps = 28/337 (8%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           E + LDL  N+I  +N+  F    HLE L L+ N ++  E    F++L +LR L L +N+
Sbjct: 66  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNR 124

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           +  +P  V + L   +L  L ++EN I  +LD  F   L NL +L +  N + +I+  +F
Sbjct: 125 LKLIPLGVFTGL--SNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAF 181

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
             L +L  L L   NL++IPT+ LS L  L+ L L   N + I   +FK L+ LK+++I+
Sbjct: 182 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 241

Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
             P LD++        P  L  L      +LT L    C        N + +  +A + L
Sbjct: 242 HWPYLDTMT-------PNCLYGL------NLTSLSITHC--------NLTAVPYLAVRHL 280

Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             L+ + ++  P + +I+     + ++L+ + +     L  +    F+G   L+ +++ G
Sbjct: 281 VYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQL-VGGQLAVVEPYAFRGLNYLRVLNVSG 338

Query: 423 NSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLW 458
           N L+ LE S F  +  +  L L  NPL CDC LLW++
Sbjct: 339 NQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 375

Functional component of the Nogo receptor signaling complex (RTN4R/NGFR) in RhoA activation responsible for some inhibition of axonal regeneration by myelin-associated factors. Is also an important negative regulator of oligodentrocyte differentiation and axonal myelination. Acts in conjunction with RTN4 and RTN4R in regulating neuronal precursor cell motility during cortical development.

Pongo abelii (taxid: 9601)

>sp|Q96FE5|LIGO1_HUMAN Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 OS=Homo sapiens GN=LINGO1 PE=1 SV=2

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 170/337 (50%), Gaps = 28/337 (8%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           E + LDL  N+I  +N+  F    HLE L L+ N ++  E    F++L +LR L L +N+
Sbjct: 72  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNR 130

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           +  +P  V + L   +L  L ++EN I  +LD  F   L NL +L +  N + +I+  +F
Sbjct: 131 LKLIPLGVFTGL--SNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAF 187

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
             L +L  L L   NL++IPT+ LS L  L+ L L   N + I   +FK L+ LK+++I+
Sbjct: 188 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 247

Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
             P LD++        P  L  L      +LT L    C        N + +  +A + L
Sbjct: 248 HWPYLDTMT-------PNCLYGL------NLTSLSITHC--------NLTAVPYLAVRHL 286

Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             L+ + ++  P + +I+     + ++L+ + +     L  +    F+G   L+ +++ G
Sbjct: 287 VYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQL-VGGQLAVVEPYAFRGLNYLRVLNVSG 344

Query: 423 NSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLW 458
           N L+ LE S F  +  +  L L  NPL CDC LLW++
Sbjct: 345 NQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 381

Functional component of the Nogo receptor signaling complex (RTN4R/NGFR) in RhoA activation responsible for some inhibition of axonal regeneration by myelin-associated factors. Is also an important negative regulator of oligodentrocyte differentiation and axonal myelination. Acts in conjunction with RTN4 and RTN4R in regulating neuronal precursor cell motility during cortical development.

Homo sapiens (taxid: 9606)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 131/476 (27%), Positives = 204/476 (42%), Gaps = 69/476 (14%)

Query: 22  CPSRCQC-FDQK---LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-------YTL 70
           CP+ C C +D +   L   C+   L  +P  +    Q + L  N +S++         +L
Sbjct: 41  CPATCACSYDDEVNELSVFCSSRNLTRLPDGIPGGTQALWLDSNNLSSIPPAAFRNLSSL 100

Query: 71  SFY----IELRSLD--------------LSVNKINVLGSHNFEYQNKLLNLNISYNEISA 112
           +F      +L SL+              L  N++  L    F Y   L  L +S N +S 
Sbjct: 101 AFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLAVGTFAYTPALALLGLSNNRLSR 160

Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKS 172
           L    F+GL  L  L+L +N ++V+   AFR    L  L+L+ N + Y + + +FS L  
Sbjct: 161 LEDGLFEGLGNLWDLNLGWNSLAVLPDAAFRGLGGLRELVLAGNRLAYLQPA-LFSGLAE 219

Query: 173 LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
           LR L L  N +  +  NV + LP   L  LYL+ NLI  V   +F   L  L  L LS N
Sbjct: 220 LRELDLSRNALRAIKANVFAQLPR--LQKLYLDRNLIAAVAPGAF-LGLKALRWLDLSHN 276

Query: 233 IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKS 292
            ++ + E +F  L  L  L LS+N ++++  +    L  L  L L  N    +   +F+ 
Sbjct: 277 RVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFEDLHFLEELQLGHNRIRQLAERSFEG 336

Query: 293 LFSLKL----------VKINLIPNLDSIDQPLSLS------LPPLLLSLSIPLAFSLTPL 336
           L  L++          VK+     L ++   ++LS      LP  +              
Sbjct: 337 LGQLEVLTLDHNQLQEVKVGAFLGLTNVAV-MNLSGNCLRNLPEQVFR------------ 383

Query: 337 GTLKCDRLDLSGNNFSNIDSVAFKSLFSLK--LVKINLIPNLDSIDQRAFVDNIQLETVI 394
           G  K   L L G+    I    F  L  L+   +K N    L  I++++     +L  + 
Sbjct: 384 GLGKLHSLHLEGSCLGRIRPHTFAGLSGLRRLFLKDN---GLVGIEEQSLWGLAELLELD 440

Query: 395 INENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLH 449
           +  N  L  LP +LFQG   L+ + L  N L+ L A    PL+R  +LD+S N L 
Sbjct: 441 LTSN-QLTHLPHQLFQGLGKLEYLLLSHNRLAELPADALGPLQRAFWLDVSHNRLE 495

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|Q7L0X0|TRIL_HUMAN TLR4 interactor with leucine rich repeats OS=Homo sapiens GN=TRIL PE=1 SV=2

 Score =  106 bits (265), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 142/316 (44%), Gaps = 34/316 (10%)

Query: 12  LALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVP----IQLNPEVQTIILRENRISNV- 66
           LAL  L + +CP RC C        CT+ GL VVP    +    +V T  L  N I+N+ 
Sbjct: 17  LALPPLAEPVCPERCDC-QHPQHLLCTNRGLRVVPKTSSLPSPHDVLTYSLGGNFITNIT 75

Query: 67  HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126
            +      +LR LDL  N+I  L    FE  ++L  L +  N + AL+  T   L++L+ 
Sbjct: 76  AFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALAPGTLAPLRKLRI 135

Query: 127 LDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
           L  + N+IS +++ +F     L  L L  N +    D+ +F+ L +L  L L++N+I  +
Sbjct: 136 LYANGNEISRLSRGSFEGLESLVKLRLDGNALGALPDA-VFAPLGNLLYLHLESNRIRFL 194

Query: 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFT-------------------------L 221
             N  + L    L +L L+ N ++  L ++  F                          L
Sbjct: 195 GKNAFAQL--GKLRFLNLSANELQPSLRHAATFAPLRSLSSLILSANNLQHLGPRIFQHL 252

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
             L  L+L  N ++ +   +F  L  L  L L  N LS +PT  L  L +L  LDLSGN 
Sbjct: 253 PRLGLLSLRGNQLTHLAPEAFWGLEALRELRLEGNRLSQLPTALLEPLHSLEALDLSGNE 312

Query: 282 FSNIDSVAFKSLFSLK 297
            S +    F  L  L+
Sbjct: 313 LSALHPATFGHLGRLR 328

Component of the TLR4 signaling complex. Mediate the innate immune response to bacterial lipopolysaccharide (LPS) leading to cytokine secretion.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	608
157134290	610	tartan [Aedes aegypti] gi|108881391|gb|E	0.784	0.781	0.341	7e-70
157134286	673	tartan [Aedes aegypti] gi|108881389|gb|E	0.631	0.570	0.380	3e-68
195382037	763	GJ21757 [Drosophila virilis] gi|19414453	0.605	0.482	0.402	1e-65
195025204	803	GH21135 [Drosophila grimshawi] gi|193902	0.606	0.459	0.398	2e-65
158287359	398	AGAP011229-PA [Anopheles gambiae str. PE	0.601	0.919	0.384	1e-64
383856948	611	PREDICTED: insulin-like growth factor-bi	0.759	0.756	0.308	7e-64
161077348	738	Fish-lips, isoform C [Drosophila melanog	0.605	0.498	0.393	2e-62
322783005	624	hypothetical protein SINV_01095 [Solenop	0.759	0.740	0.306	2e-62
307194209	645	Leucine-rich repeat and immunoglobulin-l	0.634	0.598	0.341	3e-62
332024975	645	Leucine-rich repeat and immunoglobulin-l	0.631	0.595	0.350	3e-62

>gi|157134290|ref|XP_001663226.1| tartan [Aedes aegypti] gi|108881391|gb|EAT45616.1| AAEL003111-PA [Aedes aegypti]

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 192/562 (34%), Positives = 280/562 (49%), Gaps = 85/562 (15%)

Query: 10  LILALTKLNKAICPSRCQC-FDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY 68
           ++L   +   + CPS C C    K    C  AGL+VVPIQLNP+V+ I L  NRI+NVH+
Sbjct: 22  ILLVFLRQVYSFCPSICTCEVHPKARTWCIGAGLDVVPIQLNPDVRYINLTSNRITNVHF 81

Query: 69  TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD 128
           TLSFY +L  LD+S NKI  LGS NFE+Q+ L  LN+S N I  + KD FKGL+ L+ L 
Sbjct: 82  TLSFYHKLEVLDISCNKIEALGSKNFEFQHDLRMLNMSDNAIVDIPKDAFKGLERLQILK 141

Query: 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN 188
           L  N+I  I+ TAF D  +L  L  S N I   E   +   L SL  L   NNQ+L++P 
Sbjct: 142 LCNNRIETIHATAFHDLRNLLELDFSNNAIISLEHGTL-RHLYSLEWLSFQNNQVLEIPY 200

Query: 189 NVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTL 248
           +   NL H                        L+ L +L LS N+I FI   SFV LR L
Sbjct: 201 D--RNLEH------------------------LSRLQSLDLSVNLIEFIANDSFVNLREL 234

Query: 249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLD 308
             L L  N L+ +       L+AL  LDL+ NNF+ + ++    L +L            
Sbjct: 235 RMLKLGGNVLTELDYGAFHGLNALRALDLADNNFTIVPTLQLSKLCNLTY---------- 284

Query: 309 SIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLV 368
                                              L LSGNNF  + +VAF +LF L+ +
Sbjct: 285 -----------------------------------LSLSGNNFEMLPAVAFLNLFQLRQL 309

Query: 369 KINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL 428
            ++ +  L+ ID RAFVDN  L TV +++N +   LP +L+ GN +L  +S++ N+L  L
Sbjct: 310 HLDRLDRLERIDVRAFVDNTNLHTVTLDDNPSFTSLPLRLWHGNPHLVEISMRRNALVRL 369

Query: 429 EASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGT 488
           +A  FPL+R+  L L+ NPL C+C+LLWLW LV  +     E    +  +TS     P  
Sbjct: 370 DAVQFPLDRLHRLRLAGNPLVCNCSLLWLWRLVA-ESDPDDEFLLTSAALTSAGYAGPSN 428

Query: 489 TTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLE--VKAVPENSVHCESNTMLYVLS- 545
             E         ++H+L I  + L C    D + +   ++ + E+ ++C ++ +  + + 
Sbjct: 429 DEET--------SSHALIIDRDELGCDLYEDGRKIRRTLRTMTESDLNCPTHVLTVISAV 480

Query: 546 FMLLLLSSGVICILMYFIYRKR 567
           F +LL+ +    +L +F   KR
Sbjct: 481 FSILLVLATAASVLYFFRLSKR 502

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134286|ref|XP_001663224.1| tartan [Aedes aegypti] gi|108881389|gb|EAT45614.1| AAEL003115-PA [Aedes aegypti]

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 174/457 (38%), Positives = 256/457 (56%), Gaps = 73/457 (15%)

Query: 6   TCIFLILALTKLNKAICPSRCQC-FDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS 64
           T + L++ + +     CPS C C  D+ L  SC +A LEVVPIQLNP+V+ I L  N I+
Sbjct: 29  TLLVLLICIPRQIIGFCPSLCTCEADRNLRTSCINASLEVVPIQLNPDVRHINLSSNAIT 88

Query: 65  NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKEL 124
           NVH+TL FY +L  LD+S N+++ LGS NFE Q KL  LN+S N +++L KDTFKGLK+L
Sbjct: 89  NVHFTLGFYSQLEMLDISHNRLDSLGSKNFEAQEKLKVLNLSENVLTSLLKDTFKGLKQL 148

Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
           + L L+ N+I  I+ TAF    +L  L L+ N I  FE+ E+F  L +L  L L+NNQIL
Sbjct: 149 EILKLNNNRIEKIHSTAFHGLANLLELDLNNNLIVSFEE-EVFKPLTTLERLSLENNQIL 207

Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244
           +VP +  +NL H                        L +L  L LS+N+I F++  SFV 
Sbjct: 208 EVPYD--TNLEH------------------------LRSLQFLDLSTNLIEFVSNDSFVA 241

Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 304
           LR L +L L  N L+ +     + L+AL  LDL+ NN + + +V    L++L +      
Sbjct: 242 LRELRTLKLDVNVLTELDLGSFNGLNALKYLDLADNNLTVVPTVQLSKLYNLTI------ 295

Query: 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
                                                  L LSGN+FS++ +V+F +LF 
Sbjct: 296 ---------------------------------------LSLSGNSFSHLSAVSFLNLFH 316

Query: 365 LKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS 424
           L+ + +N +  L+ ID RAF+DN  L+ + +++N +  +LP +LF GN NL  +S++ N+
Sbjct: 317 LRELHLNRLDMLERIDARAFIDNTYLQILSLDDNPSFSELPLRLFYGNPNLIDISMRRNA 376

Query: 425 LSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILV 461
           L  L+A  FPL+R+  L L+ NPL C+C++ WLW LV
Sbjct: 377 LVSLDAVQFPLDRLQRLKLAGNPLVCNCSIRWLWRLV 413

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382037|ref|XP_002049739.1| GJ21757 [Drosophila virilis] gi|194144536|gb|EDW60932.1| GJ21757 [Drosophila virilis]

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 179/445 (40%), Positives = 238/445 (53%), Gaps = 77/445 (17%)

Query: 20  AICPSRCQCF--DQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELR 77
           A CPS+CQC   D    A C DA LE VPIQLNPE + I L  NRI N+ +TL FY++L 
Sbjct: 63  AFCPSKCQCLGGDANSRALCVDAALEDVPIQLNPETKYINLTLNRIRNLEFTLPFYMKLE 122

Query: 78  SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVI 137
            LDLS N I  LGS NFEYQ +L  LN+S N +SAL K  FKGL  L  LDLSYN+I  +
Sbjct: 123 VLDLSQNIIETLGSKNFEYQTELRTLNLSRNLVSALHKHAFKGLTNLLLLDLSYNRIETV 182

Query: 138 NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH- 196
           + TA  D   L  L L+ NNI   ED+  F  + SL +L   NN++LDVP    SNL H 
Sbjct: 183 HPTALGDLAALVELDLTNNNIVSLEDN-CFKGMLSLEVLVFRNNRLLDVP---ASNLWHL 238

Query: 197 QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN 256
            +L  L +++NL+E V ++SF   L  L  L++  N++S ++  +F  L +L  LDLS+N
Sbjct: 239 HALKSLDMSDNLVEYVRNDSFE-GLKELLALSVRGNVMSELDVGAFEGLISLKHLDLSDN 297

Query: 257 NLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSL 316
           NL+ +PT+QLSKLS L  L+L GN F+++ +VAF +LF L+                   
Sbjct: 298 NLTMVPTQQLSKLSNLTYLNLGGNRFAHLPAVAFLNLFHLR------------------- 338

Query: 317 SLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 376
                                 L   RLD        IDS AF     L+ + +N  P L
Sbjct: 339 ---------------------ELHLSRLDY----LQRIDSRAFVDNTHLQTLHLNFNPQL 373

Query: 377 DSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLE 436
             I                         P +LFQGN N+  V ++ NSL  L ++ FP++
Sbjct: 374 SDI-------------------------PMRLFQGNPNILEVYMQSNSLQTLYSAQFPVD 408

Query: 437 RISFLDLSDNPLHCDCNLLWLWILV 461
           ++  L L DNPL C+C+LLWLW LV
Sbjct: 409 QLQKLYLGDNPLQCNCSLLWLWRLV 433

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195025204|ref|XP_001986021.1| GH21135 [Drosophila grimshawi] gi|193902021|gb|EDW00888.1| GH21135 [Drosophila grimshawi]

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 177/444 (39%), Positives = 237/444 (53%), Gaps = 75/444 (16%)

Query: 20  AICPSRCQCF--DQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELR 77
           A CPS+CQC   D    A C DA LE VPIQLNPE + I L  NRI N+ +TL FY++L 
Sbjct: 67  AFCPSKCQCLGGDANSRALCIDAALEDVPIQLNPETKYINLTLNRIRNLEFTLPFYMKLE 126

Query: 78  SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVI 137
            LDLS N I  LGS NFEYQ +L  LN+S N +SAL K  FKGL  L  LDLSYN+I  +
Sbjct: 127 VLDLSQNIIETLGSKNFEYQTELRTLNLSRNLVSALHKHAFKGLTNLLLLDLSYNRIETV 186

Query: 138 NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ 197
           + TA  D   L  L L+ NNI   ED+  F  + SL +L   NN++LDVP   L +L   
Sbjct: 187 HPTALGDLAALVELDLTNNNIVSLEDN-CFKGMPSLEVLVFRNNRLLDVPATNLWHL--H 243

Query: 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
           +L  L +++NL+E V ++SF   L  L  L++  N++S ++  +F  L +L  LDLS+NN
Sbjct: 244 ALKSLDMSDNLVEFVRNDSFE-GLKELLALSVRGNVMSELDAGAFEGLISLKHLDLSDNN 302

Query: 258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLS 317
           L+ +PT+QLSKLS L  L+L GN F+++ +VAF +LF L+                    
Sbjct: 303 LTMVPTQQLSKLSNLTYLNLGGNRFAHLPAVAFLNLFHLR-------------------- 342

Query: 318 LPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLD 377
                                L   RLD        IDS AF     L+ + +N  P L 
Sbjct: 343 --------------------ELHLSRLDY----LQRIDSRAFVDNTHLQTLHLNYNPQLS 378

Query: 378 SIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLER 437
            I                         P +LFQGN N+  V ++ NSL  L ++ FP+++
Sbjct: 379 DI-------------------------PMRLFQGNPNILEVYMQSNSLQTLYSAQFPVDQ 413

Query: 438 ISFLDLSDNPLHCDCNLLWLWILV 461
           +  L L DNPL C+C+LLWLW LV
Sbjct: 414 LQKLYLGDNPLQCNCSLLWLWRLV 437

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287359|ref|XP_309414.4| AGAP011229-PA [Anopheles gambiae str. PEST] gi|157019612|gb|EAA05167.4| AGAP011229-PA [Anopheles gambiae str. PEST]

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 170/442 (38%), Positives = 234/442 (52%), Gaps = 76/442 (17%)

Query: 22  CPSRCQC-FDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
           CPS C C  D  +   C  AGL+VVPIQLNP+V+ I L  NRI+NVH+TL+FY +L  LD
Sbjct: 30  CPSICTCEGDPNVRTWCIGAGLDVVPIQLNPDVRYINLTANRITNVHFTLTFYYKLEVLD 89

Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
           L+ N+I  LGS NF+ Q  L  LN+S N I ++ KD F+GL+ L+TL L  N+I  I+  
Sbjct: 90  LAGNRIEALGSRNFDTQQALRTLNLSDNAIVSIPKDAFRGLQRLQTLKLCGNRIDTIHPA 149

Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH--QS 198
           AF D  +L  L L  N +T  E S +   L SL +L   NNQ+L+VP     NL H  Q 
Sbjct: 150 AFHDLRNLIELDLEGNALTSLEPSTL-RHLYSLEVLSFQNNQLLEVPYE--RNLEHLGQR 206

Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258
           L  L L+ NL+E + ++SF   L  L TL L  NI++ ++  +F  L  L +LD+ +NNL
Sbjct: 207 LQLLDLSVNLLEYIANDSF-VALRELRTLRLGGNILTELDYGAFHGLSGLKALDIVDNNL 265

Query: 259 SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
           + +PT QLSKL  L  L LSGN F ++ +VAF +LF L+                     
Sbjct: 266 TVVPTLQLSKLCNLTYLSLSGNYFESLPAVAFLNLFQLQ--------------------- 304

Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
                               L  DRLD        ID+ AF    +L+++ ++  P+  S
Sbjct: 305 -------------------QLHLDRLD----RLQRIDARAFVDNAALRILTLDDNPSFAS 341

Query: 379 IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERI 438
                                    LP +LF  N NL  +S++ N+L  L+A HFPL+R+
Sbjct: 342 -------------------------LPLRLFHSNPNLAEISMRRNALIRLDAVHFPLDRL 376

Query: 439 SFLDLSDNPLHCDCNLLWLWIL 460
             L+L  NPL C+C+LLWLW L
Sbjct: 377 HRLELGGNPLVCNCSLLWLWRL 398

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856948|ref|XP_003703968.1| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Megachile rotundata]

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 177/573 (30%), Positives = 286/573 (49%), Gaps = 111/573 (19%)

Query: 7   CIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV 66
            I + +A++ +   +CP++C+C D+ L ASC  AGLE+VPIQLNPE++ + L  NR+ N+
Sbjct: 14  AIAMAVAMSVVANGLCPTQCRCDDESLRASCAYAGLEIVPIQLNPEIKHLDLSNNRVGNI 73

Query: 67  HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126
           H +  FY  L +LDL+ N I+ LGS NF  Q  L+ LN+S N + AL+K++ +GL  LK 
Sbjct: 74  HLSFVFYGNLETLDLTSNAIHTLGSDNFVLQKSLITLNVSNNAVKALAKNSLQGLDSLKE 133

Query: 127 LDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
           L+L+ N IS +N+ AF+ T  LE+L LS N+IT   +  +  +L  +R L L+ N +L+V
Sbjct: 134 LNLASNNISDMNEEAFKSTSELEILNLSDNSITSLPEG-LLKNLHKIRALILNRNSLLEV 192

Query: 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLR 246
           P   L+  P                           +L  + LS N+I  ++  S  +L 
Sbjct: 193 PTANLALAP---------------------------SLEKVDLSDNLIQELDRDSLPSLP 225

Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
           +L SLDL+NN +  I      +L  L++LDLSGNN +++ + A        L ++N++  
Sbjct: 226 SLVSLDLANNVIRNIADDAFDRLPGLLHLDLSGNNLTSVPTSA--------LARLNVLST 277

Query: 307 LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLK 366
           L                        S  PLG               N+D+V F++LF L+
Sbjct: 278 L----------------------ILSRNPLG---------------NLDAVGFRNLFELR 300

Query: 367 LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLS 426
            +++N    + S+  RAF DN+ LE + ++ N  LK+LP+++      LK VSL+  SLS
Sbjct: 301 SLELNDC-TIVSVHARAFADNVNLERISLDGNRGLKELPARVLYSARYLKWVSLRRCSLS 359

Query: 427 HLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISP 486
            L+ + FP++ +S L    NPL C+C++ WLW L++                        
Sbjct: 360 TLQPTQFPVDALSSLRFGGNPLVCNCSVHWLWTLIR------------------------ 395

Query: 487 GTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSF 546
              TE +R      N   L +  +++ C+   +  G  + A+ E S+ C  + +   LS 
Sbjct: 396 ---TEERR------NESRLELDSHDIVCTD-EEFAGKALIALSEGSLRCRLSPLYLSLSA 445

Query: 547 MLLLLSSGVICILMYFIY---RKRALWKNKINR 576
              L ++  I +L+  +    RK+ L     NR
Sbjct: 446 AGCLAATATILVLIVHVTRTNRKKRLAYTAPNR 478

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161077348|ref|NP_001097402.1| Fish-lips, isoform C [Drosophila melanogaster] gi|442624434|ref|NP_611619.2| Fish-lips, isoform D [Drosophila melanogaster] gi|54650582|gb|AAV36870.1| RE58108p [Drosophila melanogaster] gi|157400437|gb|ABV53873.1| Fish-lips, isoform C [Drosophila melanogaster] gi|440214573|gb|AAF46774.2| Fish-lips, isoform D [Drosophila melanogaster]

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 175/445 (39%), Positives = 237/445 (53%), Gaps = 77/445 (17%)

Query: 20  AICPSRCQCFDQKL--EASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELR 77
           A CPS+CQC   +    A C DA LE VPIQLNPE + I L  NRI  + ++L FY++L 
Sbjct: 40  AFCPSKCQCLGGEANSRALCVDAALEDVPIQLNPETKYINLTVNRIRTLEFSLPFYMKLE 99

Query: 78  SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVI 137
            LDLS N I  LGS NFEYQ++L  LN+S N +S+L K  FKGL  L  LDLS+N+I  +
Sbjct: 100 ILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLTNLLLLDLSFNRIETV 159

Query: 138 NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH- 196
           + TA  D   L  L L+ NNI   ED+  F  + +L +L   NN++LDVP    SNL H 
Sbjct: 160 HPTALSDLASLVELDLTNNNIVSLEDN-CFKGMNTLEVLVFRNNRLLDVP---ASNLWHL 215

Query: 197 QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN 256
            +L  L ++ NL+E V ++SF   L  L  L++  N++S ++ S+F  L +L  LDLS+N
Sbjct: 216 HALKSLDMSLNLVEFVRNDSFE-GLKELLALSVQGNVMSELDLSAFEGLISLKHLDLSDN 274

Query: 257 NLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSL 316
           NL+ +PT+QLSKLS L  L+L GN FS + +VAF +LF L+                   
Sbjct: 275 NLTMVPTQQLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLR------------------- 315

Query: 317 SLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 376
                                 L   RLD        IDS AF     L+ + +N  P L
Sbjct: 316 ---------------------ELHLSRLDF----LQRIDSRAFVDNTHLQTLHLNNNPQL 350

Query: 377 DSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLE 436
             I                         P +LFQGN N+  V ++ NSL  L ++ FP++
Sbjct: 351 SDI-------------------------PMRLFQGNPNILEVYMQSNSLQTLYSAQFPVD 385

Query: 437 RISFLDLSDNPLHCDCNLLWLWILV 461
           ++  L L DNPL C+C+LLWLW LV
Sbjct: 386 QLQKLYLGDNPLQCNCSLLWLWRLV 410

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322783005|gb|EFZ10717.1| hypothetical protein SINV_01095 [Solenopsis invicta]

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 176/574 (30%), Positives = 291/574 (50%), Gaps = 112/574 (19%)

Query: 7   CIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV 66
            I +   +T +   +CP+RC+C D+ L  SC  AGLEVVPIQLNPE++ + L  NR++NV
Sbjct: 1   AIAMAAVMTVVASGLCPARCRCDDESLRVSCAYAGLEVVPIQLNPEIRHLDLSNNRVTNV 60

Query: 67  HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126
           H T  FY  L SLDLS N ++ LG  NF  Q  L+ LN+S N I  L+++   GL  LK 
Sbjct: 61  HLTFGFYGNLESLDLSSNLLHTLGLANFGMQQNLIVLNVSNNMIHTLARNALDGLTSLKE 120

Query: 127 LDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
           L+L+ N IS I++ AF+ T  LE+L LS N+IT   D E+  +L  +R L L+ N +L+V
Sbjct: 121 LNLAGNNISEISEQAFKSTSELEVLDLSDNSITSLSD-ELLKNLHKIRTLILNKNSLLEV 179

Query: 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLR 246
           P + L+  P  SL  + L++NLI  +  +S P +L +L +L LS+N+I ++ + +F    
Sbjct: 180 PMSNLALAP--SLERVDLSDNLILELDQDSLP-SLPSLVSLNLSNNVIRYVADVAF---- 232

Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
                                +L  L+ LDLSGNN +++ + A        L ++N++  
Sbjct: 233 --------------------DRLPDLLYLDLSGNNLTSVPTAA--------LARLNVLTG 264

Query: 307 LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLK 366
           L                        S  PLG+L               ++VAF++LF L+
Sbjct: 265 L----------------------VLSTNPLGSL---------------EAVAFRNLFELR 287

Query: 367 LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLS 426
            +++N    + +++ RAF DN+ LE + ++ N  L++LP+++  G   LK VSL+  SL+
Sbjct: 288 TLELNDC-TIANVNARAFADNVNLERISMDGNRELRELPARVLYGARYLKWVSLRRCSLA 346

Query: 427 HLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISP 486
            L+ + FP++ +S L +  NPL C+C++ WLW +++ + +                    
Sbjct: 347 TLQPTQFPVDGLSHLRVGGNPLVCNCSVHWLWNVIRAEER-------------------- 386

Query: 487 GTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSF 546
                        +N   L +  +++ CS   +  G  + A+ E S+ C  + +   LS 
Sbjct: 387 -------------RNETRLELDSHDIVCSD-EEFAGRALIALSEGSLRCRLSPLYLSLSV 432

Query: 547 MLLLLSSGVICILMYFIYR----KRALWKNKINR 576
           +   L++  +  L+  + R    +R+L     NR
Sbjct: 433 VGCFLAAAAVLTLIARLTRAKRKRRSLAYAAPNR 466

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194209|gb|EFN76626.1| Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 [Harpegnathos saltator]

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 244/460 (53%), Gaps = 74/460 (16%)

Query: 7   CIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV 66
            I +   +T +   +CP RC+C D+ L A+C  AGLEVVPIQLNPE++ + L  NR++NV
Sbjct: 14  AIAMAAVMTVVASGLCPPRCRCDDESLRATCAHAGLEVVPIQLNPEIRHLDLSSNRVANV 73

Query: 67  HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126
           H T SFY  L SLDLS N I+ LG  NF  Q  L+ LN+S N I  L+K+  +GL  LK 
Sbjct: 74  HLTFSFYGYLESLDLSSNLIHTLGLENFSLQQNLVVLNVSDNAIRTLAKNALRGLTSLKE 133

Query: 127 LDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
           L+L+ N IS +++ AF+ T  LELL LS N+IT   D  +  +L  +R L L  N +L++
Sbjct: 134 LNLAGNNISQMDEQAFKYTSELELLNLSDNSITSLPDG-LLRNLHKIRTLILSKNSLLEI 192

Query: 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLR 246
           P   L+  P                           +L  + LS N+I  ++  S  +L 
Sbjct: 193 PTGNLALAP---------------------------SLERIDLSDNLILELDRDSLPSLP 225

Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
           +L SL+LSNN + +I      +L  L+ LDLSGNN +++ + A   L             
Sbjct: 226 SLVSLNLSNNVIRSIADVAFDRLPDLLYLDLSGNNLTSVPTAALARL------------- 272

Query: 307 LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLK 366
                            S+   L  S  PLG+L               ++VAF++LF L+
Sbjct: 273 -----------------SVLTSLVLSTNPLGSL---------------EAVAFRNLFELR 300

Query: 367 LVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLS 426
            +++N    + S++ RAF DN+ LE + ++ N  L++LP+++      L+ VSL+  SL+
Sbjct: 301 SLELNDC-TIASVNARAFADNVNLERISMDGNRELRELPARVLYSARYLRWVSLRRCSLA 359

Query: 427 HLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVK 466
            L+ + FP++ +S L +  NPL C+C++ WLW +++ + +
Sbjct: 360 TLQPTQFPVDGLSHLRVGGNPLVCNCSVHWLWNVIRAEER 399

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024975|gb|EGI65162.1| Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 [Acromyrmex echinatior]

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 162/462 (35%), Positives = 252/462 (54%), Gaps = 78/462 (16%)

Query: 7   CIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV 66
            I +   +T +   +CP+RC+C D+ L  SC  AGLEVVPIQLNPE++ + L  NR++NV
Sbjct: 15  AIAMAAVMTVVASGLCPARCRCDDESLRVSCAYAGLEVVPIQLNPEIRHLDLSNNRVTNV 74

Query: 67  HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126
           H T  FY  L SLDLS N ++ LG  NF  Q  L+ LNIS N I  L+++   GL  LK 
Sbjct: 75  HLTFGFYGNLESLDLSSNLLHTLGLANFGMQQNLITLNISSNMIHTLARNALDGLTSLKE 134

Query: 127 LDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
           L+L+ N IS I++ AF+    LE+L LS N+IT   D E+  +L  ++ L L+ N +L+V
Sbjct: 135 LNLASNNISEISEQAFKSISELEVLDLSDNSITSLSD-ELLKNLHKIQTLILNKNSLLEV 193

Query: 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLR 246
           P N L+  P  SL  + L++NLI  +  +S P +L +L +L LS+N+I +I + +F    
Sbjct: 194 PTNNLALAP--SLERVDLSDNLILELDRDSLP-SLPSLISLNLSNNVIRYIADVAF---- 246

Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
                                +L  L  LDLSGNN +++ + A        L ++N++  
Sbjct: 247 --------------------DRLPDLRYLDLSGNNLTSVPTAA--------LARLNVLTG 278

Query: 307 LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLK 366
           L                        S  PLG L               ++VAF++LF L+
Sbjct: 279 L----------------------VLSTNPLGYL---------------EAVAFRNLFELR 301

Query: 367 LVKIN--LIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS 424
           ++ +N  +I N   ++ RAF DN+ LE + ++ N  LK+LP+++  G   LK VSL+  S
Sbjct: 302 ILDLNDCMIAN---VNARAFADNVNLERISMDGNRELKELPARVLYGARYLKWVSLRRCS 358

Query: 425 LSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVK 466
           L+ L+ + FP++ +S L +  NPL C+C++ WLW +++ + +
Sbjct: 359 LATLQPTQFPVDGLSHLRVGGNPLVCNCSVHWLWNVIRAEER 400

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	608
FB|FBgn0085397	738	Fili "Fish-lips" [Drosophila m	0.491	0.405	0.412	1.6e-48
FB|FBgn0010452	737	trn "tartan" [Drosophila melan	0.458	0.378	0.341	1e-34
FB|FBgn0023095	748	caps "capricious" [Drosophila	0.480	0.390	0.309	2.2e-30
WB|WBGene00004854	1410	slt-1 [Caenorhabditis elegans	0.296	0.127	0.297	2.5e-24
UNIPROTKB|F1NI07	604	IGFALS "Uncharacterized protei	0.600	0.604	0.261	2.6e-24
UNIPROTKB|F1MJZ4	610	IGFALS "Uncharacterized protei	0.595	0.593	0.271	1.1e-23
UNIPROTKB|F1PSS7	1534	SLIT1 "Uncharacterized protein	0.320	0.127	0.291	1.4e-23
UNIPROTKB|O94813	1529	SLIT2 "Slit homolog 2 protein"	0.218	0.086	0.362	1.9e-12
UNIPROTKB|Q5T0V0	1461	SLIT1 "Slit homolog 1 protein"	0.320	0.133	0.281	5.3e-23
UNIPROTKB|F1P8A1	1530	SLIT2 "Uncharacterized protein	0.218	0.086	0.355	1.4e-11

FB|FBgn0085397 Fili "Fish-lips" [Drosophila melanogaster (taxid:7227)]

 Score = 508 (183.9 bits), Expect = 1.6e-48, P = 1.6e-48
 Identities = 128/310 (41%), Positives = 174/310 (56%)

Query:     8 IFLILALTKL---NKAICPSRCQCF--DQKLEASCTDAGLEVVPIQLNPEVQTIILRENR 62
             + L+L L  L     A CPS+CQC   +    A C DA LE VPIQLNPE + I L  NR
Sbjct:    25 LLLLLTLVILPPETTAFCPSKCQCLGGEANSRALCVDAALEDVPIQLNPETKYINLTVNR 84

Query:    63 ISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK 122
             I  + ++L FY++L  LDLS N I  LGS NFEYQ++L  LN+S N +S+L K  FKGL 
Sbjct:    85 IRTLEFSLPFYMKLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLT 144

Query:   123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
              L  LDLS+N+I  ++ TA  D   L  L L+ NNI   ED+  F  + +L +L   NN+
Sbjct:   145 NLLLLDLSFNRIETVHPTALSDLASLVELDLTNNNIVSLEDN-CFKGMNTLEVLVFRNNR 203

Query:   183 ILDVPNNVLSNLPH-QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXX 241
             +LDVP    SNL H  +L  L ++ NL+E V ++SF   L  L  L++            
Sbjct:   204 LLDVP---ASNLWHLHALKSLDMSLNLVEFVRNDSFE-GLKELLALSVQGNVMSELDLSA 259

Query:   242 XVTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
                L +L            +PT+QLSKLS L  L+L GN FS + +VAF +LF L+ + +
Sbjct:   260 FEGLISLKHLDLSDNNLTMVPTQQLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHL 319

Query:   302 NLIPNLDSID 311
             + +  L  ID
Sbjct:   320 SRLDFLQRID 329

GO:0003674 "molecular_function" evidence=ND

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISM

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0010452 trn "tartan" [Drosophila melanogaster (taxid:7227)]

 Score = 393 (143.4 bits), Expect = 1.0e-34, P = 1.0e-34
 Identities = 97/284 (34%), Positives = 145/284 (51%)

Query:    20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
             A CP  CQC D  L   C +  L+V+PI LNP +Q ++++ N+I  +  ++ FY EL  L
Sbjct:    28 ANCPPGCQCDDNTLVVQCGEGQLDVLPIALNPSIQRLVIKSNKIKTIDSSIQFYAELTFL 87

Query:    80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
             DLS N +  +    F YQ KL  +++++N+I  +S  TF GL  +  L+L  N+IS +++
Sbjct:    88 DLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQ 147

Query:   140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSN-LPHQS 198
               F   L +E L L  N I Y  D + F  L  LRIL LD+N +  VP+ V+   +P  S
Sbjct:   148 GTFTPLLKIEELNLGENRIGYL-DPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMP--S 204

Query:   199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXX 258
             L  L+L  N ++++  ++F   L  L  L L             + L+ L          
Sbjct:   205 LAELFLGMNTLQSIQADAFQ-DLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRL 263

Query:   259 XAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
               IP+  LSKL  L  L L  N+F  I   AF  L  LK +++N
Sbjct:   264 DRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVN 307

GO:0005886 "plasma membrane" evidence=NAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IMP

GO:0016477 "cell migration" evidence=TAS

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0023095 caps "capricious" [Drosophila melanogaster (taxid:7227)]

 Score = 360 (131.8 bits), Expect = 2.2e-30, P = 2.2e-30
 Identities = 92/297 (30%), Positives = 142/297 (47%)

Query:     7 CIFLILAL--TKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS 64
             C+ L+LA     L  A CP+ C+C D  L  +C +  L+V+PI LNP +Q ++++ N++ 
Sbjct:    26 CLCLVLATLPVALGLANCPNGCECDDDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLK 85

Query:    65 NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKEL 124
              +  ++ FY +L  LDLS N +  +   +F Y  KL  L++ +N+I  +S  TF GL  +
Sbjct:    86 TIDSSMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTI 145

Query:   125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
               L+L  N I+ +    F   + L  L L  N I++  D      L +LR+L LD+N + 
Sbjct:   146 SVLNLRGNLIAELEYRTFSPMVKLAELNLGQNRISHI-DPHALDGLDNLRVLYLDDNTLT 204

Query:   185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVT 244
              VP  +     H SL  LYL  N   T+   +F   L  L  L L               
Sbjct:   205 TVPGELTFQALH-SLAELYLGTNSFMTIPGGAFQ-DLKGLTRLDLRGAGLHNISGDALKG 262

Query:   245 LRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
             L +L           AIPT    +L  L  L++  N+F  I S AF  L  L+ +++
Sbjct:   263 LVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLEL 319

GO:0007411 "axon guidance" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0016020 "membrane" evidence=NAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0016477 "cell migration" evidence=TAS

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0042995 "cell projection" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

WB|WBGene00004854 slt-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 186 (70.5 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
 Identities = 56/188 (29%), Positives = 94/188 (50%)

Query:     5 LTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS 64
             L C   IL + +   A CP+ C C D+ +  SC    L  VP  +  +   + L++N I+
Sbjct:     2 LICFIFILLIPE--SATCPAECVCVDRTV--SCVGQQLTEVPQNIPNDTIRLDLQDNEIT 57

Query:    65 NVHYT-LSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKE 123
              +     S  + L++L L  N+I  + + +F     L  L +S N I  L  + F+   +
Sbjct:    58 KIGPNDFSSLMNLKALQLMDNQIVTIHNQSFSSLVFLQKLRLSRNRIRHLPDNVFQNNLK 117

Query:   124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
             L  LDLS N I+V++    +    LE+L L  N+I   E++ + SS  SL +L L+ N++
Sbjct:   118 LTHLDLSENDITVVSDAQLQGPEFLEVLNLDKNHIFCLENN-VISSWVSLEVLTLNGNRL 176

Query:   184 --LDVPNN 189
                + P+N
Sbjct:   177 TTFEEPSN 184

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISS

GO:0005102 "receptor binding" evidence=ISS;IPI

GO:0033563 "dorsal/ventral axon guidance" evidence=IGI;IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0048843 "negative regulation of axon extension involved in axon guidance" evidence=IGI

UNIPROTKB|F1NI07 IGFALS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
 Identities = 99/379 (26%), Positives = 161/379 (42%)

Query:    76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
             L  L L  N++  L  H F +   L++L+++ N  S + +  F GL  L  L+L +N + 
Sbjct:   119 LYHLHLERNRLKYLAPHTFLHTQNLVSLSLNNNLFSKVEEGLFAGLSNLWYLNLGWNSLV 178

Query:   136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP 195
             V+    F D  +L  LIL+ N + Y +  ++F SL  L+ L L  N +  +  N+   L 
Sbjct:   179 VLPDKVFHDLPNLRELILAGNKLPYLQH-QLFCSLTELKELDLSGNALKGIKINIFVKL- 236

Query:   196 HQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXX 255
              Q L  LYLN N I  +   +F   + +L  L L             + L +LH      
Sbjct:   237 -QKLQKLYLNNNQINAIAPRAF-MGMKSLRWLDLSHNRLTSLYEDTFLGLLSLHVLRLST 294

Query:   256 XXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQXXX 315
                 ++  +    L  L  L L  N   ++    F  L  L+++ +N    L  I     
Sbjct:   295 NSITSLRPRTFKDLQFLEELQLGHNRIWSLAERTFDGLGQLEVLSLNN-NQLQDIKAGAF 353

Query:   316 XXXXXXXXXXXXXXAFSLTPL----GTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKIN 371
                                P     G  K   L L  +  S I +  F SL SL+  ++ 
Sbjct:   354 LGLYNVAVMHLSANCIKTLPEYVFEGVTKLHSLHLEHSCLSKIRANTFSSLTSLR--RLF 411

Query:   372 LIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA 430
             L  N + +I+ ++F +  +L  + +  N  L  L  +LF G +NL+ + L  N +  +  
Sbjct:   412 LQHNAISTIEDQSFRELHELLELDLKHN-RLSHLSPQLFVGLSNLEYLFLSFNQIMDISQ 470

Query:   431 SHF-PLERISFLDLSDNPL 448
             + F PL R+ +LDLS N L
Sbjct:   471 NTFSPLRRLFWLDLSHNQL 489

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MJZ4 IGFALS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
 Identities = 102/376 (27%), Positives = 155/376 (41%)

Query:    79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
             L L  N+++ L +H F +   L +L +S N +S L +  F+GL  L  L+L +N ++V+ 
Sbjct:   131 LHLEHNRLHALAAHTFLHTPGLASLGLSNNLLSRLDEGLFRGLAHLWDLNLGWNSLTVLP 190

Query:   139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQS 198
              TAF+    L  L+L+ N + Y +   +F  L  LR L L  N +  V  NV   LP   
Sbjct:   191 DTAFQGLAGLRELVLAGNKLAYLQPP-LFCGLGELRELDLSRNTLRSVKANVFVKLP--K 247

Query:   199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXX 258
             L  LYL+ NL+  V   +F   +  L  L L               L  LH         
Sbjct:   248 LQKLYLDHNLVAAVAPGAF-LGMKALRWLDLSHNRVGSLLEDSFPGLLGLHVLRLSHNVL 306

Query:   259 XAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQXXXXXX 318
               +  +    L  L  L L  N    +   AF  L  L+++ +N    L  +        
Sbjct:   307 AGLRPRTFKDLHFLEELQLGHNRLRQLPEEAFAGLGQLEVLALN-DNQLQELRPGGFLGL 365

Query:   319 XXXXXXXXXXXAFSLTP----LGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 374
                             P     G  K   L L G   + +  +AF  L  L+  ++ L  
Sbjct:   366 RNLAVLNLSSNCLRDLPERAFQGLAKLHSLHLEGGCLARLGPLAFAGLSGLR--RLFLKG 423

Query:   375 N-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF 433
             N +  +D+R+     +L  + +  N  L  LP +LFQ    L+ + L  N LS L A   
Sbjct:   424 NSIADVDERSLGGLAELLELDLTANQ-LTHLPGRLFQDLGRLEYLLLARNRLSALPADAL 482

Query:   434 -PLERISFLDLSDNPL 448
              PL+R  +LD+S N L
Sbjct:   483 GPLQRTFWLDVSHNRL 498

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PSS7 SLIT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 1.4e-23, Sum P(4) = 1.4e-23
 Identities = 58/199 (29%), Positives = 97/199 (48%)

Query:     8 IFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH 67
             + L  A  +L    CP+ C C    ++  C  AGL+ +P  +    + + L  N I+ +H
Sbjct:    20 LLLWAAAWRLGATACPALCTCTGATVD--CHGAGLQAIPKNIPRSTERLELNGNNITRIH 77

Query:    68 YTLSFYI-ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126
                   + +LR L L  N+I V+    F+   +L  L ++ N++  L +  F+  + L  
Sbjct:    78 KNDFVGLKQLRVLQLMENQIGVVERGAFDDMKELERLRLNRNQLHTLPELLFQNNQALSR 137

Query:   127 LDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
             LDLS N I  I + AFR    L+ L L  N I+  E+   F +L+ L +L L+NN I  +
Sbjct:   138 LDLSENTIQAIPRKAFRGATDLKNLQLDKNQISCIEEGA-FRALRGLEVLTLNNNNITTI 196

Query:   187 PNNVLSNLPHQSLHYLYLN 205
             P +  +++P      L+ N
Sbjct:   197 PVSSFNHMPKLRTFRLHSN 215

GO:0005576 "extracellular region" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|O94813 SLIT2 "Slit homolog 2 protein" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 49/135 (36%), Positives = 73/135 (54%)

Query:    22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
             CP+ C C D  +   C++ GL+V+P  +  +V  + L  N+ + V   LS Y  L  +DL
Sbjct:   727 CPTECTCLDTVVR--CSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 784

Query:    82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             S N+I+ L + +F    +LL L +SYN +  +   TF GLK L+ L L  N ISV+ + A
Sbjct:   785 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 844

Query:   142 FRDTLHLELLILSFN 156
             F D   L  L +  N
Sbjct:   845 FNDLSALSHLAIGAN 859

GO:0001656 "metanephros development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0033563 "dorsal/ventral axon guidance" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IMP

GO:0050929 "induction of negative chemotaxis" evidence=IDA

GO:0050772 "positive regulation of axonogenesis" evidence=TAS

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0048495 "Roundabout binding" evidence=IPI

GO:0043237 "laminin-1 binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0050919 "negative chemotaxis" evidence=IDA;IMP

GO:0030336 "negative regulation of cell migration" evidence=IMP;IDA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IDA;IMP

GO:0010593 "negative regulation of lamellipodium assembly" evidence=IDA

GO:0005095 "GTPase inhibitor activity" evidence=IDA

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=IDA

GO:0016020 "membrane" evidence=NAS

GO:0010596 "negative regulation of endothelial cell migration" evidence=IDA

GO:0043116 "negative regulation of vascular permeability" evidence=IDA

GO:0005509 "calcium ion binding" evidence=NAS

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=IDA

GO:0030837 "negative regulation of actin filament polymerization" evidence=IDA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IDA

GO:0002689 "negative regulation of leukocyte chemotaxis" evidence=IDA

GO:0043394 "proteoglycan binding" evidence=IPI

GO:0048846 "axon extension involved in axon guidance" evidence=IDA

GO:0071504 "cellular response to heparin" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=IDA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051414 "response to cortisol stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0008045 "motor neuron axon guidance" evidence=IDA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0007411 "axon guidance" evidence=IDA;TAS

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=IDA

GO:0005576 "extracellular region" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0035385 "Roundabout signaling pathway" evidence=IC;IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0090027 "negative regulation of monocyte chemotaxis" evidence=ISS

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IDA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IMP

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=IDA

GO:0071676 "negative regulation of mononuclear cell migration" evidence=IDA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IDA

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=IMP

UNIPROTKB|Q5T0V0 SLIT1 "Slit homolog 1 protein" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 5.3e-23, Sum P(4) = 5.3e-23
 Identities = 56/199 (28%), Positives = 96/199 (48%)

Query:     8 IFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH 67
             + L  A  +L  + CP+ C C    ++  C   GL+ +P  +    + + L  N I+ +H
Sbjct:    20 LLLWAAAWRLGASACPALCTCTGTTVD--CHGTGLQAIPKNIPRNTERLELNGNNITRIH 77

Query:    68 YT-LSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT 126
                 +   +LR L L  N+I  +    F+   +L  L ++ N++  L +  F+  + L  
Sbjct:    78 KNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSR 137

Query:   127 LDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV 186
             LDLS N I  I + AFR    L+ L L  N I+  E+   F +L+ L +L L+NN I  +
Sbjct:   138 LDLSENAIQAIPRKAFRGATDLKNLQLDKNQISCIEEGA-FRALRGLEVLTLNNNNITTI 196

Query:   187 PNNVLSNLPHQSLHYLYLN 205
             P +  +++P      L+ N
Sbjct:   197 PVSSFNHMPKLRTFRLHSN 215

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1P8A1 SLIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 48/135 (35%), Positives = 71/135 (52%)

Query:    22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
             CP+ C C D  +   C++ GL+V+P  +  +V  + L  N  + V   L  Y  L  +DL
Sbjct:   727 CPTECTCLDTVVR--CSNKGLKVLPKGIPRDVTELYLDGNHFTLVPKELYNYKHLTLIDL 784

Query:    82 SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             S N+I+ L + +F    +LL L +SYN +  +   TF GLK L+ L L  N ISV+ + A
Sbjct:   785 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 844

Query:   142 FRDTLHLELLILSFN 156
             F D   L  L +  N
Sbjct:   845 FSDLSALSHLAIGAN 859

GO:0005576 "extracellular region" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	608
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 23/57 (40%), Positives = 33/57 (57%)

Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
           +L++S N ++ +    FKGL  LK LDLS N ++ I+  AF     L  L LS NN+
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 8e-08
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
           NL +L LS+N ++ I + +F  L  L  LDLS NNL++I  +  S L +L +LDLSGNN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
           LK+LDLS N+++VI   AF+   +L++L LS NN+T     E FS L SLR L L  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
           L+SLDLS N++ V+    F+    L  L++S N ++++S + F GL  L++LDLS N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 121/439 (27%), Positives = 177/439 (40%), Gaps = 61/439 (13%)

Query: 51  PEVQTIILRENRIS-----NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
           P +QTI L  N++S     ++  T S    LR L+LS N  N  GS        L  L++
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSS---SLRYLNLSNN--NFTGSIPRGSIPNLETLDL 147

Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
           S N +S    +       LK LDL  N +      +  +   LE L L+ N +      E
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207

Query: 166 IFSSLKSLRILKLD-NNQILDVPNNV--LSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
           +   +KSL+ + L  NN   ++P  +  L++L H  L Y  L    I + L N     L 
Sbjct: 208 L-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGN-----LK 260

Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
           NL  L L  N +S     S  +L+ L SLDLS+N+LS    + + +L  L  L L  NNF
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Query: 283 SNIDSVAFKSLFSLK----------------LVKINLIPNLDSIDQPLSLSLPPLLL--- 323
           +    VA  SL  L+                L K N +  LD     L+  +P  L    
Sbjct: 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380

Query: 324 ----------SLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL---FSLKLVKI 370
                     SL   +  SL    +L+  R+ L  N+FS      F  L   + L +   
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLR--RVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA 430
           NL   ++S       D   L+ + +  N     LP     G+  L+++ L  N  S    
Sbjct: 439 NLQGRINSRKW----DMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVP 492

Query: 431 SHF-PLERISFLDLSDNPL 448
                L  +  L LS+N L
Sbjct: 493 RKLGSLSELMQLKLSENKL 511

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 58/187 (31%), Positives = 76/187 (40%), Gaps = 35/187 (18%)

Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL---KSLRILKLDN 180
           L  LDLS N ++         + +L  LIL  N++    + EI  SL   +SLR ++L +
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL----EGEIPKSLGACRSLRRVRLQD 413

Query: 181 NQI----------------LDVPNNVLS--------NLPHQSLHYLYLNENLIETVLDNS 216
           N                  LD+ NN L         ++P  SL  L L  N     L +S
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP--SLQMLSLARNKFFGGLPDS 471

Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
           F      L  L LS N  S        +L  L  L LS N LS     +LS    LV+LD
Sbjct: 472 F--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 277 LSGNNFS 283
           LS N  S
Sbjct: 530 LSHNQLS 536

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 12/241 (4%)

Query: 68  YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
             L   + L SLDL++N++    S   E  N L +L++  N I+ +          LK L
Sbjct: 87  ENLLNLLPLPSLDLNLNRLRSNISELLELTN-LTSLDLDNNNITDIPPLIGLLKSNLKEL 145

Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP 187
           DLS NKI  +  +  R+  +L+ L LSFN+++        S+L +L  L L  N+I D+P
Sbjct: 146 DLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSDLPKLL--SNLSNLNNLDLSGNKISDLP 202

Query: 188 NNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRT 247
                 L   +L  L L+ N I  +L +     L NL  L LS+N +  + E S   L  
Sbjct: 203 P--EIELL-SALEELDLSNNSIIELLSSL--SNLKNLSGLELSNNKLEDLPE-SIGNLSN 256

Query: 248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 307
           L +LDLSNN +S+I +  L  L+ L  LDLSGN+ SN   +    L  L+L+   L+   
Sbjct: 257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK 314

Query: 308 D 308
            
Sbjct: 315 A 315

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 108/389 (27%), Positives = 174/389 (44%), Gaps = 55/389 (14%)

Query: 98  NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS-VINKTAFRDTLHLELLILSFN 156
           ++++++++S   IS         L  ++T++LS N++S  I    F  +  L  L LS N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQIL-DVPNNVLSNLPHQSLHYLYLNENLIETVLDN 215
           N   F  S    S+ +L  L L NN +  ++PN++ S     SL  L L  N    VL  
Sbjct: 129 N---FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS---FSSLKVLDLGGN----VLVG 178

Query: 216 SFPFTLTNLHTL---ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSAL 272
             P +LTNL +L    L+SN +          +++L  + L  NNLS     ++  L++L
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 273 VNLDLSGNNFS--------NIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLS 324
            +LDL  NN +        N+ ++ +  L+  KL    + P++ S+ + +SL L    LS
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSLS 297

Query: 325 LSIP-LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI------NLIP--- 374
             IP L   L  L     + L L  NNF+    VA  SL  L+++++        IP   
Sbjct: 298 GEIPELVIQLQNL-----EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 375 ----NLDSID----------QRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420
               NL  +D                +  L  +I+  N    ++P  L    + L+ V L
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS-LRRVRL 411

Query: 421 KGNSLSHLEASHF-PLERISFLDLSDNPL 448
           + NS S    S F  L  + FLD+S+N L
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 54/230 (23%), Positives = 87/230 (37%), Gaps = 43/230 (18%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           L+ LDLS N +   G    E               S L   +      L+ L L+ N + 
Sbjct: 83  LQELDLSDNALGPDGCGVLE---------------SLLRSSS------LQELKLNNNGLG 121

Query: 136 V----INKTAFRD-TLHLELLILSFNNITY---FEDSEIFSSLKSLRILKLDNNQILDVP 187
                +     +D    LE L+L  N +        ++   + + L+ L L NN I D  
Sbjct: 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181

Query: 188 NNVLSN-LPHQS-LHYLYLNENLIETVLDNSF---PFTLTNLHTLALSSN-----IISFI 237
              L+  L     L  L LN N +     ++      +L +L  L L  N       + +
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241

Query: 238 NESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA----LVNLDLSGNNFS 283
             +      +L +L LS N+++    K L+++ A    L+ LDL GN F 
Sbjct: 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
           +L  L L+ N +  + D +F   L NL  L LS N ++ I+  +F  L +L SLDLS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAF-KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 258 L 258
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 26/50 (52%), Positives = 30/50 (60%)

Query: 248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
           L SLDLSNN L+ IP      L  L  LDLSGNN ++I   AF  L SL+
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR 51

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 147 HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNE 206
           +L+ L LS N +T   D   F  L +L++L L  N +  +     S LP  SL  L L+ 
Sbjct: 1   NLKSLDLSNNRLTVIPD-GAFKGLPNLKVLDLSGNNLTSISPEAFSGLP--SLRSLDLSG 57

Query: 207 NLI 209
           N +
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 349 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKL 408
           ++ ++I   AF    SLK   I L  +L SI   AF +   L ++ I    +L  +    
Sbjct: 20  SSVTSIGEYAFSGCTSLK--SITLPSSLTSIGSYAFYNCSSLTSITIPS--SLTSIGEYA 75

Query: 409 FQGNTNLKSVSLKGN 423
           F   ++L S+++  N
Sbjct: 76  FSNCSSLTSITIPSN 90

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 90/363 (24%), Positives = 145/363 (39%), Gaps = 40/363 (11%)

Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
           SALS +T + +    T   +   I++    +  +++ +  L L+ ++ T        S L
Sbjct: 10  SALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRL 69

Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
            SL +L       LD   N+L+ LP  SL     + NL     + S    LTNL +L L 
Sbjct: 70  LSLDLLSPSGISSLDGSENLLNLLPLPSL-----DLNLNRLRSNISELLELTNLTSLDLD 124

Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPT----------------------KQLSK 268
           +N I+ I     +    L  LDLS+N + ++P+                      K LS 
Sbjct: 125 NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184

Query: 269 LSALVNLDLSGNNFSNIDSVAFK--SLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLS 326
           LS L NLDLSGN  S++        +L  L L   ++I  L S+    +LS    L   +
Sbjct: 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS---GLELSN 241

Query: 327 IPLAFSLTPLGTLKC-DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFV 385
             L      +G L   + LDLS N  S+I S+   +      +  N + N          
Sbjct: 242 NKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP------- 294

Query: 386 DNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSD 445
               L  ++      L  L +   + N+ L + ++  N  +    +   LE ++ L   D
Sbjct: 295 LIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLD 354

Query: 446 NPL 448
           N L
Sbjct: 355 NAL 357

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 30/109 (27%), Positives = 51/109 (46%)

Query: 51  PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
           P +Q + L  N+             L +LDLS N+ +          ++L+ L +S N++
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
           S    D     K+L +LDLS+N++S     +F +   L  L LS N ++
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	608
KOG4194|consensus	873		100.0
KOG4237|consensus	498		100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194|consensus	873		100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472|consensus	565		99.97
KOG0444|consensus	1255		99.96
KOG0472|consensus	565		99.95
KOG0444|consensus	1255		99.94
KOG4237|consensus	498		99.92
KOG0618|consensus	1081		99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
KOG0618|consensus	1081		99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.62
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.59
KOG0617|consensus	264		99.57
KOG0617|consensus	264		99.55
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
KOG1259|consensus	490		99.21
KOG3207|consensus	505		99.19
PLN03150	623	hypothetical protein; Provisional	99.14
KOG3207|consensus	505		99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1909|consensus	382		99.1
KOG0532|consensus	722		99.09
KOG0532|consensus	722		99.09
KOG0531|consensus	414		99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
KOG1259|consensus	490		99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
KOG1909|consensus	382		98.93
KOG0531|consensus	414		98.9
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.77
KOG4658|consensus	889		98.76
KOG4658|consensus	889		98.74
PLN03150	623	hypothetical protein; Provisional	98.68
KOG1859|consensus	1096		98.44
KOG1644|consensus	233		98.43
KOG1859|consensus	1096		98.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.29
KOG1644|consensus	233		98.24
KOG4579|consensus	177		98.22
KOG2982|consensus	418		98.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.15
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.07
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
KOG2120|consensus	419		97.98
KOG2982|consensus	418		97.97
KOG4579|consensus	177		97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.7
KOG2120|consensus	419		97.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.54
KOG3665|consensus	699		97.39
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	97.38
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	97.3
KOG3665|consensus	699		97.29
KOG2739|consensus	260		97.19
KOG2123|consensus	388		97.19
KOG2123|consensus	388		96.68
KOG4341|consensus	483		96.58
KOG4341|consensus	483		96.13
KOG2739|consensus	260		96.02
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.65
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.37
PF01463	25	LRRCT: Leucine rich repeat C-terminal domain; Inte	94.97
smart00370	26	LRR Leucine-rich repeats, outliers.	94.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.86
KOG1947|consensus	482		94.34
KOG1947|consensus	482		93.85
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.82
smart00370	26	LRR Leucine-rich repeats, outliers.	93.82
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.04
KOG3864|consensus	221		92.5
KOG0473|consensus	326		92.42
KOG0473|consensus	326		90.91
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.13
KOG4308|consensus	478		87.03
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.22
KOG3864|consensus	221		82.47

>KOG4194|consensus

Probab=100.00  E-value=1.9e-55  Score=435.89  Aligned_cols=448  Identities=27%  Similarity=0.391  Sum_probs=399.7

Q ss_pred             CCCCCceecCCceEEEecCCCCccc-----cCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccc
Q psy3330          21 ICPSRCQCFDQKLEASCTDAGLEVV-----PIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNF   94 (608)
Q Consensus        21 ~Cp~~C~c~~~~~~v~C~~~~l~~i-----p~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f   94 (608)
                      .||..|.|.  ....+|++..+..+     +..+|+.++.|++++|++..+.. .|.++++|+.+++..|.++.||. .-
T Consensus        45 ~cpa~c~c~--~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~-f~  121 (873)
T KOG4194|consen   45 ECPATCPCN--TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPR-FG  121 (873)
T ss_pred             cCCCcCCCC--ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccc-cc
Confidence            699999995  46899999999886     77789999999999999999875 67899999999999999999986 23


Q ss_pred             cccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330          95 EYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR  174 (608)
Q Consensus        95 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  174 (608)
                      +...+|+.|+|.+|.|+.+...++..++.|+.||||.|.|+.++...|..-.++++|+|++|.|+.+. .+.|.++.+|.
T Consensus       122 ~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~  200 (873)
T KOG4194|consen  122 HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLL  200 (873)
T ss_pred             ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc-cccccccchhe
Confidence            44556999999999999999999999999999999999999999999999899999999999999998 89999999999


Q ss_pred             EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEecc
Q psy3330         175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS  254 (608)
Q Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  254 (608)
                      +|.|+.|+++.+|...|.++++  |+.|+|..|+|..+....|.+ +++|+.|.+..|.+..+..+.|.++.++++|+|+
T Consensus       201 tlkLsrNrittLp~r~Fk~L~~--L~~LdLnrN~irive~ltFqg-L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  201 TLKLSRNRITTLPQRSFKRLPK--LESLDLNRNRIRIVEGLTFQG-LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE  277 (873)
T ss_pred             eeecccCcccccCHHHhhhcch--hhhhhccccceeeehhhhhcC-chhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence            9999999999999999999954  999999999999888888998 9999999999999999999999999999999999


Q ss_pred             CCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccC
Q psy3330         255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLT  334 (608)
Q Consensus       255 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~  334 (608)
                      .|+++.+..+++.+++.|+.|++|+|.|..+...+|+.+++|+.|+|+.+. +..        +++.-+.          
T Consensus       278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~--------l~~~sf~----------  338 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITR--------LDEGSFR----------  338 (873)
T ss_pred             cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-ccc--------CChhHHH----------
Confidence            999999999999999999999999999999999999999999999996432 211        1111000          


Q ss_pred             CCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcC---ChhhhcCCcccceeecccCccccccCcccCCC
Q psy3330         335 PLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI---DQRAFVDNIQLETVIINENMNLKQLPSKLFQG  411 (608)
Q Consensus       335 ~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~---~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~  411 (608)
                        ....+++|+|++|.+..+...+|..+++|+.|+++. |.+...   ...+|.++++|+.|++.+|+ ++.||..+|.+
T Consensus       339 --~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsg  414 (873)
T KOG4194|consen  339 --VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSG  414 (873)
T ss_pred             --HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCce-eeecchhhhcc
Confidence              011458999999999999999999999999999987 655432   45689999999999999998 99999999999


Q ss_pred             CCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccc
Q psy3330         412 NTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTE  491 (608)
Q Consensus       412 l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (608)
                      +++|+.|||.+|.|.+|.+..|.-..|++|-+..-.|-|||+++|+.+|+..+..                         
T Consensus       415 l~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~l-------------------------  469 (873)
T KOG4194|consen  415 LEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKL-------------------------  469 (873)
T ss_pred             CcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhccc-------------------------
Confidence            9999999999999999999988544999999999999999999999999974311                         


Q ss_pred             hhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330         492 AQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN  538 (608)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~  538 (608)
                                     .......|++|+++.|+.+..++..++.|++.
T Consensus       470 ---------------q~sv~a~CayPe~Lad~~i~svd~~~lvC~Ds  501 (873)
T KOG4194|consen  470 ---------------QSSVIAKCAYPEPLADQSIVSVDTANLVCDDS  501 (873)
T ss_pred             ---------------ccceeeeccCCcccccceeEeechhhceecCC
Confidence                           12235689999999999999999999999864

>KOG4237|consensus

Probab=100.00  E-value=3e-43  Score=334.87  Aligned_cols=366  Identities=31%  Similarity=0.456  Sum_probs=265.4

Q ss_pred             cCCCCCCceecC-CceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccc
Q psy3330          19 KAICPSRCQCFD-QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEY   96 (608)
Q Consensus        19 ~~~Cp~~C~c~~-~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~   96 (608)
                      +.+||.+|.|.+ ....|+|+++++++||.++|++++.++|..|.|+.||+ +|+.+++|+.|||++|+|+.|.+++|.+
T Consensus        34 ~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   34 ASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             cccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence            568999999985 45689999999999999999999999999999999986 8889999999999999999999999999


Q ss_pred             cccccEEEccC-CCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330          97 QNKLLNLNISY-NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI  175 (608)
Q Consensus        97 l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  175 (608)
                      ++.|.+|-+-+ |+|+.++.++|.+|.+|+.|.+.-|++..+..++|..+++|..|.+..|.+..+. ...|..+..++.
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~t  192 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIKT  192 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc-cccccchhccch
Confidence            98888877766 8899999999999999999999999998888889999999999999999888886 667888888888


Q ss_pred             EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCC-CccC-EEec
Q psy3330         176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTL-RTLH-SLDL  253 (608)
Q Consensus       176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~-~L~L  253 (608)
                      +.+..|.+...     .+++.  +... +.-|      +..+++ ..-..-..+.+.++..+.+..|... .++. .+..
T Consensus       193 lhlA~np~icd-----CnL~w--la~~-~a~~------~ietsg-arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~  257 (498)
T KOG4237|consen  193 LHLAQNPFICD-----CNLPW--LADD-LAMN------PIETSG-ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS  257 (498)
T ss_pred             HhhhcCccccc-----cccch--hhhH-Hhhc------hhhccc-ceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence            88877764321     11110  1000 0000      111111 2223333344444444444443221 1111 1111


Q ss_pred             cCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcccccccccc
Q psy3330         254 SNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSL  333 (608)
Q Consensus       254 s~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~  333 (608)
                      ..+....-|...|+.+++|+.|+|++|+++.+.+.+|                                           
T Consensus       258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF-------------------------------------------  294 (498)
T KOG4237|consen  258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF-------------------------------------------  294 (498)
T ss_pred             ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh-------------------------------------------
Confidence            2222333444455555555555555555555544444                                           


Q ss_pred             CCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCC
Q psy3330         334 TPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNT  413 (608)
Q Consensus       334 ~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~  413 (608)
                                                                         .+...+++|.|..|+ +..+...+|.++.
T Consensus       295 ---------------------------------------------------e~~a~l~eL~L~~N~-l~~v~~~~f~~ls  322 (498)
T KOG4237|consen  295 ---------------------------------------------------EGAAELQELYLTRNK-LEFVSSGMFQGLS  322 (498)
T ss_pred             ---------------------------------------------------cchhhhhhhhcCcch-HHHHHHHhhhccc
Confidence                                                               344555566666786 8888888999999


Q ss_pred             CCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccch
Q psy3330         414 NLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEA  492 (608)
Q Consensus       414 ~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (608)
                      .|+.|+|.+|+|+.+.++.| .+.+|.+|+|-.|||.|||.+.|+..|++.+.                           
T Consensus       323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~---------------------------  375 (498)
T KOG4237|consen  323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS---------------------------  375 (498)
T ss_pred             cceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC---------------------------
Confidence            99999999999999988888 58899999999999999999999999998431                           


Q ss_pred             hhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCC
Q psy3330         493 QRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCES  537 (608)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~  537 (608)
                                     ...+..|..|..+++.++.+++..++.|..
T Consensus       376 ---------------~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~  405 (498)
T KOG4237|consen  376 ---------------VVGNPRCQSPGFVRQIPISDVAFGDFRCGG  405 (498)
T ss_pred             ---------------CCCCCCCCCCchhccccchhccccccccCC
Confidence                           123567888888888888888877777653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.1e-40  Score=383.63  Aligned_cols=380  Identities=24%  Similarity=0.222  Sum_probs=173.9

Q ss_pred             cccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCC
Q psy3330          68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLH  147 (608)
Q Consensus        68 ~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  147 (608)
                      ..++++++|++|++++|.+....+..|.++++|++|+|++|.+....+..+.++++|++|+|++|.+.+..+..+.++++
T Consensus       158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  237 (968)
T PLN00113        158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS  237 (968)
T ss_pred             hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence            34444444444444444444333334444444444444444444433344444444444444444444444444444444


Q ss_pred             CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEE
Q psy3330         148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL  227 (608)
Q Consensus       148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  227 (608)
                      |++|++++|.+.+.. |..+.++++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..+..+.. +++|+.|
T Consensus       238 L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L  313 (968)
T PLN00113        238 LNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL--QKLISLDLSDNSLSGEIPELVIQ-LQNLEIL  313 (968)
T ss_pred             CCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeeccCchhHhhc--cCcCEEECcCCeeccCCChhHcC-CCCCcEE
Confidence            555555444444333 3444444444444444444443333333333  23444555444444444444443 4445555


Q ss_pred             EccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCC-
Q psy3330         228 ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-  306 (608)
Q Consensus       228 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~-  306 (608)
                      ++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+++.++. 
T Consensus       314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  393 (968)
T PLN00113        314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE  393 (968)
T ss_pred             ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence            5555544444444444444555555555544433333444444444444444444443333333333333333322110 


Q ss_pred             ------------CCC---CCcccccCCchhhhcccc---------------cccc-cc------------------CCCC
Q psy3330         307 ------------LDS---IDQPLSLSLPPLLLSLSI---------------PLAF-SL------------------TPLG  337 (608)
Q Consensus       307 ------------l~~---~~~~~~~~lp~~~~~~~~---------------~~~~-~~------------------~~~~  337 (608)
                                  +..   ..+.+.+.+|..+..++.               +..+ .+                  ...+
T Consensus       394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~  473 (968)
T PLN00113        394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG  473 (968)
T ss_pred             ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc
Confidence                        000   011122222221111000               0000 00                  0001


Q ss_pred             CceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCE
Q psy3330         338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKS  417 (608)
Q Consensus       338 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~  417 (608)
                      ..+++.|++++|++++..+..|.++++|+.|+++. +.+....+..|.++++|++|+|++|.+.+.+|.. |.++++|+.
T Consensus       474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~  551 (968)
T PLN00113        474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE-NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS-FSEMPVLSQ  551 (968)
T ss_pred             cccceEEECcCCccCCccChhhhhhhccCEEECcC-CcceeeCChHHcCccCCCEEECCCCcccccCChh-HhCcccCCE
Confidence            12345555555555555555555566666666655 4555555555556666666666666533444443 555666666


Q ss_pred             EEcCCCccc-ccCCCCCCCCCCCEEEccCCccccccC
Q psy3330         418 VSLKGNSLS-HLEASHFPLERISFLDLSDNPLHCDCN  453 (608)
Q Consensus       418 L~L~~N~l~-~l~~~~~~l~~L~~L~L~~N~~~CdC~  453 (608)
                      |+|++|+++ .+|..+..+++|+.+++++|++.|.++
T Consensus       552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             EECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            666666665 455555555566666666666665544

>KOG4194|consensus

Probab=100.00  E-value=2.4e-42  Score=342.94  Aligned_cols=399  Identities=25%  Similarity=0.336  Sum_probs=352.0

Q ss_pred             CCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccc-c-CCCccEEEeeCCCCcccCcccccccc
Q psy3330          22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLS-F-YIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        22 Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~-~-~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      |-..|.|..  ..++|........|...+...+.|+.+++.+..+.. .+. . .+.-++||+++|.++.+....|.+++
T Consensus        25 ~~g~~~~~g--~vvd~ga~~~~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~  102 (873)
T KOG4194|consen   25 LIGLCHCVG--NVVDAGAGDLSECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLP  102 (873)
T ss_pred             HHHHHHhcC--cccccCCCccccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCC
Confidence            445677754  468899998999999999999999999999988753 222 2 23456899999999999999999999


Q ss_pred             cccEEEccCCCCCCCChhhhcCC-CcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330          99 KLLNLNISYNEISALSKDTFKGL-KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK  177 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  177 (608)
                      +|+++++..|.++.||.  |++. .+|+.|+|.+|.|+.+....+..++.|+.|||+.|.|++++ ...|..-.++++|+
T Consensus       103 nLq~v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~-~~sfp~~~ni~~L~  179 (873)
T KOG4194|consen  103 NLQEVNLNKNELTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP-KPSFPAKVNIKKLN  179 (873)
T ss_pred             cceeeeeccchhhhccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc-CCCCCCCCCceEEe
Confidence            99999999999999985  5554 55999999999999999999999999999999999999998 67788889999999


Q ss_pred             ccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCc
Q psy3330         178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN  257 (608)
Q Consensus       178 L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  257 (608)
                      |++|+++.+..+.|..+  .+|..|.|++|+++.++...|.. +++|+.|+|..|++..+....|.++++|+.|.|..|.
T Consensus       180 La~N~It~l~~~~F~~l--nsL~tlkLsrNrittLp~r~Fk~-L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~  256 (873)
T KOG4194|consen  180 LASNRITTLETGHFDSL--NSLLTLKLSRNRITTLPQRSFKR-LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND  256 (873)
T ss_pred             ecccccccccccccccc--chheeeecccCcccccCHHHhhh-cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence            99999999999999999  57999999999999999999997 9999999999999998878899999999999999999


Q ss_pred             CCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCC
Q psy3330         258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG  337 (608)
Q Consensus       258 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~  337 (608)
                      +..+..++|.++.++++|+|..|+++.+..+++.++++|+.|+++++. +..+.       +..+             .-
T Consensus       257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih-------~d~W-------------sf  315 (873)
T KOG4194|consen  257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIH-------IDSW-------------SF  315 (873)
T ss_pred             cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheee-------cchh-------------hh
Confidence            999999999999999999999999999999999999999999997532 11110       0000             01


Q ss_pred             CceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCc--ccCCCCCCC
Q psy3330         338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS--KLFQGNTNL  415 (608)
Q Consensus       338 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~--~~f~~l~~L  415 (608)
                      ..++++|+|++|+|+.+++..|..|+.|+.|+++. |.+..+...+|.++++|++|||++|.....|.+  .+|.++++|
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L  394 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL  394 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence            22568999999999999999999999999999999 999999999999999999999999985555543  569999999


Q ss_pred             CEEEcCCCcccccCCCCC-CCCCCCEEEccCCcccc
Q psy3330         416 KSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHC  450 (608)
Q Consensus       416 ~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~C  450 (608)
                      +.|+|.+|+|..||...| .+..|+.|||.+|++.-
T Consensus       395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             hheeecCceeeecchhhhccCcccceecCCCCccee
Confidence            999999999999998887 69999999999999853

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.1e-36  Score=350.25  Aligned_cols=394  Identities=26%  Similarity=0.246  Sum_probs=277.5

Q ss_pred             ccccEEEeccCCCc-cccccc-ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEee
Q psy3330          51 PEVQTIILRENRIS-NVHYTL-SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD  128 (608)
Q Consensus        51 ~~l~~L~L~~n~i~-~l~~~~-~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  128 (608)
                      ++++.|+|++|.+. .+|..+ ..+++|++|+|++|++++..+.  ..+++|++|+|++|.++...+..++++++|++|+
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  170 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD  170 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence            68999999999997 577654 4889999999999988754332  3567888888888888766667788888888888


Q ss_pred             ccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCC
Q psy3330         129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL  208 (608)
Q Consensus       129 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~  208 (608)
                      +++|.+.+..|..+.++++|++|++++|.+.+.. |..++++++|++|++++|++.+..+..+..+  ++|++|++++|.
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~  247 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGL--TSLNHLDLVYNN  247 (968)
T ss_pred             CccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhcC--CCCCEEECcCce
Confidence            8888887777778888888888888888887665 6778888888888888888876666666666  558888888888


Q ss_pred             CccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChh
Q psy3330         209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV  288 (608)
Q Consensus       209 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  288 (608)
                      +.+..+..+.. +++|+.|++++|.+.+..|..+.++++|++|++++|.+++..+..+.++++|+.|++++|.+++..+.
T Consensus       248 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        248 LTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             eccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence            87777777776 77888888888877776677777777788888888777765556777777777777777777777777


Q ss_pred             hhCCCCCCceeeccCCCCCCC----------------CCcccccCCchhhhcccccccc--------ccCC---CCCcee
Q psy3330         289 AFKSLFSLKLVKINLIPNLDS----------------IDQPLSLSLPPLLLSLSIPLAF--------SLTP---LGTLKC  341 (608)
Q Consensus       289 ~f~~l~~L~~L~l~~~~~l~~----------------~~~~~~~~lp~~~~~~~~~~~~--------~~~~---~~~~~l  341 (608)
                      .+..+++|+.|+++.+.....                ..+.+.+.+|..+.........        ...+   ....++
T Consensus       327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L  406 (968)
T PLN00113        327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL  406 (968)
T ss_pred             hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence            777777777777754321110                1122222333322111000000        0000   011245


Q ss_pred             cEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcC
Q psy3330         342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK  421 (608)
Q Consensus       342 ~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~  421 (608)
                      +.|++++|++++..+..|..++.|+.++++. +.+....+..+..+++|+.|++++|++.+.+|.. + +.++|+.|+++
T Consensus       407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~-~~~~L~~L~ls  483 (968)
T PLN00113        407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISN-NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-F-GSKRLENLDLS  483 (968)
T ss_pred             CEEECcCCEeeeECChhHhcCCCCCEEECcC-CcccCccChhhccCCCCcEEECcCceeeeecCcc-c-ccccceEEECc
Confidence            6777777777776666777777777777776 5666666666667777888888877755666653 3 45788888888


Q ss_pred             CCccc-ccCCCCCCCCCCCEEEccCCccccccC
Q psy3330         422 GNSLS-HLEASHFPLERISFLDLSDNPLHCDCN  453 (608)
Q Consensus       422 ~N~l~-~l~~~~~~l~~L~~L~L~~N~~~CdC~  453 (608)
                      +|+++ .+|..+..+++|+.|++++|.+.+..+
T Consensus       484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  516 (968)
T PLN00113        484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP  516 (968)
T ss_pred             CCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence            88887 445555567888889999998887655

>KOG0472|consensus

Probab=99.97  E-value=7.6e-34  Score=271.10  Aligned_cols=380  Identities=24%  Similarity=0.365  Sum_probs=232.3

Q ss_pred             cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330          52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY  131 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  131 (608)
                      .+++|++.+|++.++|++++.+..++.++.++|+++.+|+ .+..+..|..|+.++|.+..+++ .++.+..|..++..+
T Consensus        69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s~n~~~el~~-~i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCSSNELKELPD-SIGRLLDLEDLDATN  146 (565)
T ss_pred             ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhccccceeecCc-hHHHHhhhhhhhccc
Confidence            4566666666666666666666666666666666666665 45556666666666666666664 355566666666666


Q ss_pred             CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330         132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET  211 (608)
Q Consensus       132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~  211 (608)
                      |+++.+++ .+..+.+|..+++.+|++...+ +..+. ++.|++|+...|-+..+|+. ++.+  .+|+.|++..|++..
T Consensus       147 N~i~slp~-~~~~~~~l~~l~~~~n~l~~l~-~~~i~-m~~L~~ld~~~N~L~tlP~~-lg~l--~~L~~LyL~~Nki~~  220 (565)
T KOG0472|consen  147 NQISSLPE-DMVNLSKLSKLDLEGNKLKALP-ENHIA-MKRLKHLDCNSNLLETLPPE-LGGL--ESLELLYLRRNKIRF  220 (565)
T ss_pred             cccccCch-HHHHHHHHHHhhccccchhhCC-HHHHH-HHHHHhcccchhhhhcCChh-hcch--hhhHHHHhhhccccc
Confidence            66666643 3445566666777777766665 44444 67777777777777777665 4445  557777777777777


Q ss_pred             ccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhC
Q psy3330         212 VLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK  291 (608)
Q Consensus       212 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~  291 (608)
                      ++  .|++ ++.|++|+.+.|.++.++.....++.++..|||.+|+++++|. .+.-+++|+.||+|+|.++++++. ++
T Consensus       221 lP--ef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-e~clLrsL~rLDlSNN~is~Lp~s-Lg  295 (565)
T KOG0472|consen  221 LP--EFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-EICLLRSLERLDLSNNDISSLPYS-LG  295 (565)
T ss_pred             CC--CCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-HHHHhhhhhhhcccCCccccCCcc-cc
Confidence            65  6666 7777788888777777666666677888888888888888874 456677888888888888877654 67


Q ss_pred             CCCCCceeeccCCCCC------------------------CCCCcccc-----cCCchhhh------------ccc----
Q psy3330         292 SLFSLKLVKINLIPNL------------------------DSIDQPLS-----LSLPPLLL------------SLS----  326 (608)
Q Consensus       292 ~l~~L~~L~l~~~~~l------------------------~~~~~~~~-----~~lp~~~~------------~~~----  326 (608)
                      ++ +|+.|-+.++|--                        +...+...     +..|+..+            +.+    
T Consensus       296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql  374 (565)
T KOG0472|consen  296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL  374 (565)
T ss_pred             cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence            77 7777777766510                        00111111     11111100            000    


Q ss_pred             --ccc-ccccCCCCCceecEEecCCCCCCCcCh-----------------------hhhcccccccccccccCCCCCcCC
Q psy3330         327 --IPL-AFSLTPLGTLKCDRLDLSGNNFSNIDS-----------------------VAFKSLFSLKLVKINLIPNLDSID  380 (608)
Q Consensus       327 --~~~-~~~~~~~~~~~l~~L~ls~n~l~~~~~-----------------------~~~~~l~~L~~l~l~~~~~l~~~~  380 (608)
                        +|. .|.....  --+...+++.|++..+|.                       ..+..++.|..|+++. |-+..+ 
T Consensus       375 t~VPdEVfea~~~--~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~L-  450 (565)
T KOG0472|consen  375 TLVPDEVFEAAKS--EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDL-  450 (565)
T ss_pred             ccCCHHHHHHhhh--cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhc-
Confidence              000 0000000  001223333333333221                       2233444444444442 222222 


Q ss_pred             hhhhcCCcccceeecccCc----------------------cccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCC
Q psy3330         381 QRAFVDNIQLETVIINENM----------------------NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERI  438 (608)
Q Consensus       381 ~~~f~~l~~L~~L~Ls~N~----------------------~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L  438 (608)
                      +..++++..|++|++|.|+                      .++.++..-+.++.+|..|||.+|.|..||+.+..+.+|
T Consensus       451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL  530 (565)
T KOG0472|consen  451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNL  530 (565)
T ss_pred             chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccce
Confidence            2223333444444444443                      266666665788999999999999999999999999999


Q ss_pred             CEEEccCCccc
Q psy3330         439 SFLDLSDNPLH  449 (608)
Q Consensus       439 ~~L~L~~N~~~  449 (608)
                      ++|+++||||.
T Consensus       531 ~hLeL~gNpfr  541 (565)
T KOG0472|consen  531 RHLELDGNPFR  541 (565)
T ss_pred             eEEEecCCccC
Confidence            99999999998

>KOG0444|consensus

Probab=99.96  E-value=5.2e-32  Score=271.25  Aligned_cols=357  Identities=25%  Similarity=0.323  Sum_probs=276.5

Q ss_pred             eEEEecCCCCc--cccCccC--ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCC
Q psy3330          33 LEASCTDAGLE--VVPIQLN--PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN  108 (608)
Q Consensus        33 ~~v~C~~~~l~--~ip~~~~--~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n  108 (608)
                      +.|+-++.++.  ..|.++-  ..+++|.|...++..+|+.++.+.+|++|.+++|++..+.- .++.++.|+.+++.+|
T Consensus        10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG-ELs~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG-ELSDLPRLRSVIVRDN   88 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh-hhccchhhHHHhhhcc
Confidence            45666666554  4555542  57888999989999999989999999999999999887764 5778889999999998


Q ss_pred             CCC--CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330         109 EIS--ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV  186 (608)
Q Consensus       109 ~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  186 (608)
                      ++.  +||++. -.+..|..||||+|++... |..+...+++-+|+|++|+|..++ ...|.++..|-.|+|++|++..+
T Consensus        89 ~LKnsGiP~di-F~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIP-n~lfinLtDLLfLDLS~NrLe~L  165 (1255)
T KOG0444|consen   89 NLKNSGIPTDI-FRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIP-NSLFINLTDLLFLDLSNNRLEML  165 (1255)
T ss_pred             ccccCCCCchh-cccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCC-chHHHhhHhHhhhccccchhhhc
Confidence            876  677654 4688899999999999887 456667788889999999999987 67788889999999999999988


Q ss_pred             CcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCC-ccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330         187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS-FINESSFVTLRTLHSLDLSNNNLSAIPTKQ  265 (608)
Q Consensus       187 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  265 (608)
                      |+.. ..+  ..|++|.|++|.+....-..++. +++|+.|.+++.+-+ .-.|.++.++.+|..+|+|.|.+..+| ++
T Consensus       166 PPQ~-RRL--~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ec  240 (1255)
T KOG0444|consen  166 PPQI-RRL--SMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-EC  240 (1255)
T ss_pred             CHHH-HHH--hhhhhhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-HH
Confidence            8863 455  44889999998887766666776 888888888877533 223567888889999999999998887 57


Q ss_pred             hhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEe
Q psy3330         266 LSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLD  345 (608)
Q Consensus       266 ~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~  345 (608)
                      +..+++|+.|+||+|+|+.+... .....+|                                             +.|+
T Consensus       241 ly~l~~LrrLNLS~N~iteL~~~-~~~W~~l---------------------------------------------EtLN  274 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITELNMT-EGEWENL---------------------------------------------ETLN  274 (1255)
T ss_pred             HhhhhhhheeccCcCceeeeecc-HHHHhhh---------------------------------------------hhhc
Confidence            88889999999999988876532 1222233                                             5566


Q ss_pred             cCCCCCCCcChhhhcccccccccccccCCCCCcC-ChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCc
Q psy3330         346 LSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI-DQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS  424 (608)
Q Consensus       346 ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~-~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~  424 (608)
                      +|.|+++.+| .++..++.|+.|..+. |++.-- .+..++.+.+|+.+..++|+ +.-+|.+ +..+.+|+.|.|+.|+
T Consensus       275 lSrNQLt~LP-~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEg-lcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  275 LSRNQLTVLP-DAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEG-LCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             cccchhccch-HHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cccCchh-hhhhHHHHHhcccccc
Confidence            6777777765 4566777777777665 444322 24556778888889998886 8888887 7788999999999999


Q ss_pred             ccccCCCCCCCCCCCEEEccCCcc
Q psy3330         425 LSHLEASHFPLERISFLDLSDNPL  448 (608)
Q Consensus       425 l~~l~~~~~~l~~L~~L~L~~N~~  448 (608)
                      +-++|+.+.-++.|+.||+..||=
T Consensus       351 LiTLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  351 LITLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             eeechhhhhhcCCcceeeccCCcC
Confidence            999998888888899999999884

>KOG0472|consensus

Probab=99.95  E-value=3.7e-31  Score=252.81  Aligned_cols=375  Identities=26%  Similarity=0.330  Sum_probs=301.2

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      ..++.+.+++|.+..+.+.+.++..|..|++.+|++...|+ +++.+.+++.|+.++|++..+++ .+..+.+|+.++.+
T Consensus        45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCS  122 (565)
T ss_pred             cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhcc
Confidence            35788999999999999999999999999999999999998 68889999999999999999985 58889999999999


Q ss_pred             CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330         131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~  210 (608)
                      +|.+..++ +.++.+..|+.++..+|+++..  |+.+.++.+|..+++.+|++..+++..+. +  +.|++|+...|.++
T Consensus       123 ~n~~~el~-~~i~~~~~l~dl~~~~N~i~sl--p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m--~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  123 SNELKELP-DSIGRLLDLEDLDATNNQISSL--PEDMVNLSKLSKLDLEGNKLKALPENHIA-M--KRLKHLDCNSNLLE  196 (565)
T ss_pred             ccceeecC-chHHHHhhhhhhhccccccccC--chHHHHHHHHHHhhccccchhhCCHHHHH-H--HHHHhcccchhhhh
Confidence            99999885 4567788999999999999998  57788999999999999999999998776 5  67999999999998


Q ss_pred             cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330         211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF  290 (608)
Q Consensus       211 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f  290 (608)
                      .+++ .+++ +.+|..|++..|++...+  .|.+++.|++++++.|+++.+|.+...+++++..||+.+|+++..+.+ +
T Consensus       197 tlP~-~lg~-l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~  271 (565)
T KOG0472|consen  197 TLPP-ELGG-LESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-I  271 (565)
T ss_pred             cCCh-hhcc-hhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-H
Confidence            8865 4555 899999999999999875  799999999999999999999998899999999999999999998766 5


Q ss_pred             CCCCCCceeeccCCCCCCCCCcccccCCchhhhccc----------------------------------------ccc-
Q psy3330         291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLS----------------------------------------IPL-  329 (608)
Q Consensus       291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~----------------------------------------~~~-  329 (608)
                      .-+++|+.|+++.+. +        ..+|..+.++.                                        .+. 
T Consensus       272 clLrsL~rLDlSNN~-i--------s~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~  342 (565)
T KOG0472|consen  272 CLLRSLERLDLSNND-I--------SSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG  342 (565)
T ss_pred             HHhhhhhhhcccCCc-c--------ccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence            678899999996432 1        11222211110                                        000 


Q ss_pred             ----ccccCC------CCCceecEEecCCCCCCCcChhhhccccc--ccccccccCCCCCcCChhhhcCCcccc-eeecc
Q psy3330         330 ----AFSLTP------LGTLKCDRLDLSGNNFSNIDSVAFKSLFS--LKLVKINLIPNLDSIDQRAFVDNIQLE-TVIIN  396 (608)
Q Consensus       330 ----~~~~~~------~~~~~l~~L~ls~n~l~~~~~~~~~~l~~--L~~l~l~~~~~l~~~~~~~f~~l~~L~-~L~Ls  396 (608)
                          .....+      ....+.+.|++++-+++.+|.+.|..-.+  ....+++. |.+..++.+ +..+..+. .+.++
T Consensus       343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~-L~~lkelvT~l~ls  420 (565)
T KOG0472|consen  343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKR-LVELKELVTDLVLS  420 (565)
T ss_pred             cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc-chHhhhhhh-hHHHHHHHHHHHhh
Confidence                000000      00124478999999999999998876542  44555555 555555433 22233443 45666


Q ss_pred             cCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccc
Q psy3330         397 ENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCD  451 (608)
Q Consensus       397 ~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~Cd  451 (608)
                      +|. ++.+|.. +..+++|..|+|++|-+..+|..++.+..|+.++++.|.|.|-
T Consensus       421 nn~-isfv~~~-l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l  473 (565)
T KOG0472|consen  421 NNK-ISFVPLE-LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML  473 (565)
T ss_pred             cCc-cccchHH-HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccc
Confidence            664 7777765 7889999999999999999999999998999999999999884

>KOG0444|consensus

Probab=99.94  E-value=5.5e-29  Score=249.67  Aligned_cols=334  Identities=25%  Similarity=0.327  Sum_probs=270.5

Q ss_pred             EEecCCCCccccCccC--ccccEEEeccCCCcccccccccCCCccEEEeeCCCCc--ccCcccccccccccEEEccCCCC
Q psy3330          35 ASCTDAGLEVVPIQLN--PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKIN--VLGSHNFEYQNKLLNLNISYNEI  110 (608)
Q Consensus        35 v~C~~~~l~~ip~~~~--~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~i  110 (608)
                      +.-....+..+|..+.  .+++.|.+.+|++..+.-.++.++.|+.+++.+|++.  +||++.| .+..|+.||||+|++
T Consensus        37 LkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL  115 (1255)
T KOG0444|consen   37 LKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQL  115 (1255)
T ss_pred             EEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhh
Confidence            4456677888998875  5899999999999999888999999999999999885  5887655 589999999999999


Q ss_pred             CCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccc
Q psy3330         111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV  190 (608)
Q Consensus       111 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  190 (608)
                      .+.|. .+...+++-.|+||+|+|..|+...|.+++.|-+|||++|++..++  ..+..+..|++|.|++|.+....-.-
T Consensus       116 ~EvP~-~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP--PQ~RRL~~LqtL~Ls~NPL~hfQLrQ  192 (1255)
T KOG0444|consen  116 REVPT-NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP--PQIRRLSMLQTLKLSNNPLNHFQLRQ  192 (1255)
T ss_pred             hhcch-hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC--HHHHHHhhhhhhhcCCChhhHHHHhc
Confidence            99985 4778899999999999999999999999999999999999999985  45888999999999999876544333


Q ss_pred             ccCCCCCCceEEEccCCCCc-cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCC
Q psy3330         191 LSNLPHQSLHYLYLNENLIE-TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL  269 (608)
Q Consensus       191 ~~~l~~~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l  269 (608)
                      +..+  ++|+.|.+++.+-+ ...|..+.. +.+|..++++.|.+..+ |..+..+.+|+.|+||+|+++++.. ..+.-
T Consensus       193 LPsm--tsL~vLhms~TqRTl~N~Ptsld~-l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~-~~~~W  267 (1255)
T KOG0444|consen  193 LPSM--TSLSVLHMSNTQRTLDNIPTSLDD-LHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITELNM-TEGEW  267 (1255)
T ss_pred             Cccc--hhhhhhhcccccchhhcCCCchhh-hhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeeeec-cHHHH
Confidence            3344  66888999886543 234556665 89999999999999866 6788899999999999999999874 45566


Q ss_pred             CCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCC
Q psy3330         270 SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGN  349 (608)
Q Consensus       270 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n  349 (608)
                      .+|++|++|.|+++.++ .++..+++|+.|..+                                             +|
T Consensus       268 ~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n---------------------------------------------~N  301 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLTVLP-DAVCKLTKLTKLYAN---------------------------------------------NN  301 (1255)
T ss_pred             hhhhhhccccchhccch-HHHhhhHHHHHHHhc---------------------------------------------cC
Confidence            78999999999999875 557888888776663                                             34


Q ss_pred             CCC--CcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCC-ccc
Q psy3330         350 NFS--NIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGN-SLS  426 (608)
Q Consensus       350 ~l~--~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N-~l~  426 (608)
                      +++  |+ |..++.+.+|+.+...+ |+++ +-+..+..|..|+.|.|++|+ +-.+|.. +.-++.|+.||+++| ++.
T Consensus       302 kL~FeGi-PSGIGKL~~Levf~aan-N~LE-lVPEglcRC~kL~kL~L~~Nr-LiTLPea-IHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  302 KLTFEGI-PSGIGKLIQLEVFHAAN-NKLE-LVPEGLCRCVKLQKLKLDHNR-LITLPEA-IHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             cccccCC-ccchhhhhhhHHHHhhc-cccc-cCchhhhhhHHHHHhcccccc-eeechhh-hhhcCCcceeeccCCcCcc
Confidence            332  33 34566777777776664 4443 445677889999999999998 7789986 788999999999999 454


Q ss_pred             cc
Q psy3330         427 HL  428 (608)
Q Consensus       427 ~l  428 (608)
                      .-
T Consensus       377 MP  378 (1255)
T KOG0444|consen  377 MP  378 (1255)
T ss_pred             CC
Confidence            33

>KOG4237|consensus

Probab=99.92  E-value=1.4e-27  Score=228.14  Aligned_cols=273  Identities=25%  Similarity=0.257  Sum_probs=218.0

Q ss_pred             CceEEEecCCCCccccCccC---ccccEEEeccCCCcccc-cccccCCCccEEEeeC-CCCcccCcccccccccccEEEc
Q psy3330          31 QKLEASCTDAGLEVVPIQLN---PEVQTIILRENRISNVH-YTLSFYIELRSLDLSV-NKINVLGSHNFEYQNKLLNLNI  105 (608)
Q Consensus        31 ~~~~v~C~~~~l~~ip~~~~---~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~-n~l~~i~~~~f~~l~~L~~L~L  105 (608)
                      +...+.-....++.+|....   +++|+|||++|.|+.|. .+|.++.+|..|-+.+ |+|++++.++|.++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            55677777888999987654   58999999999999986 4899999988877766 8999999999999999999999


Q ss_pred             cCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC-----------chhhhcCCCCcc
Q psy3330         106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE-----------DSEIFSSLKSLR  174 (608)
Q Consensus       106 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~~l~~L~  174 (608)
                      .-|++..+..++|..+++|..|.+..|.+..+...+|.++..++.+.+..|.+...-           .+..++...-.+
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            999999999999999999999999999999998889999999999999998743211           022233333333


Q ss_pred             EEEccCCCCCCCCcccccCCCCCCce-EEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330         175 ILKLDNNQILDVPNNVLSNLPHQSLH-YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL  253 (608)
Q Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  253 (608)
                      -..+.+.++..+++..|.... .++. .+....+-...-+...|.. +++|++|++++|+++++.+.+|.+...+++|.|
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~-esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSL-ESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhH-HhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            334445555555554443221 1111 1111222222233345666 999999999999999999999999999999999


Q ss_pred             cCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCC
Q psy3330         254 SNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP  305 (608)
Q Consensus       254 s~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~  305 (608)
                      ..|++..+....|.++..|+.|+|.+|+|+.+.+.+|..+.+|..|++-.+|
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            9999999999999999999999999999999999999999999999995544

>KOG0618|consensus

Probab=99.92  E-value=3.2e-27  Score=247.69  Aligned_cols=389  Identities=23%  Similarity=0.304  Sum_probs=204.1

Q ss_pred             eEEEecCCCCccccCccC--ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCC
Q psy3330          33 LEASCTDAGLEVVPIQLN--PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI  110 (608)
Q Consensus        33 ~~v~C~~~~l~~ip~~~~--~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i  110 (608)
                      +.++-++..+...|..+.  +.++.|+++.|.|..+|.+..+..+|++|.|..|.+...|. .+..+.+|++|+++.|.+
T Consensus        48 ~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~-~~~~lknl~~LdlS~N~f  126 (1081)
T KOG0618|consen   48 KSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPA-SISELKNLQYLDLSFNHF  126 (1081)
T ss_pred             EEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCch-hHHhhhcccccccchhcc
Confidence            344444444444444432  34555555555555555555555555555555555544443 344455555555555554


Q ss_pred             CCCChhhhcCCCcCcEeeccCC-------------------cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCC
Q psy3330         111 SALSKDTFKGLKELKTLDLSYN-------------------KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLK  171 (608)
Q Consensus       111 ~~~~~~~~~~l~~L~~L~Ls~n-------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  171 (608)
                      ..+|. .+..+..+..+..++|                   .+..-.......+.+  .|+|..|.+....    ..++.
T Consensus       127 ~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d----ls~~~  199 (1081)
T KOG0618|consen  127 GPIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD----LSNLA  199 (1081)
T ss_pred             CCCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhh----hhhcc
Confidence            44442 2222222222233322                   111111111111111  2555555544221    33444


Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEE
Q psy3330         172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL  251 (608)
Q Consensus       172 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  251 (608)
                      +|+.|....|++..+....      .+++.|+...|.++.......   ..+|++++++.|+++.++ .++..+.+|+.+
T Consensus       200 ~l~~l~c~rn~ls~l~~~g------~~l~~L~a~~n~l~~~~~~p~---p~nl~~~dis~n~l~~lp-~wi~~~~nle~l  269 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSELEISG------PSLTALYADHNPLTTLDVHPV---PLNLQYLDISHNNLSNLP-EWIGACANLEAL  269 (1081)
T ss_pred             chhhhhhhhcccceEEecC------cchheeeeccCcceeeccccc---cccceeeecchhhhhcch-HHHHhcccceEe
Confidence            4455544444444332110      345555555555553322221   245666666666666654 556666666666


Q ss_pred             eccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccc----------------
Q psy3330         252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLS----------------  315 (608)
Q Consensus       252 ~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~----------------  315 (608)
                      +..+|+++.+|. .+....+|+.|++.+|.++.+++. ....++|+.|++..+. +..+...+.                
T Consensus       270 ~~n~N~l~~lp~-ri~~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~  346 (1081)
T KOG0618|consen  270 NANHNRLVALPL-RISRITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNK  346 (1081)
T ss_pred             cccchhHHhhHH-HHhhhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcc
Confidence            666666655553 333445555555555555555442 2335555555553211 000000000                


Q ss_pred             -cCCc-------hhh----h-ccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChh
Q psy3330         316 -LSLP-------PLL----L-SLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQR  382 (608)
Q Consensus       316 -~~lp-------~~~----~-~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~  382 (608)
                       ..+|       +.+    . +......+-..-.+..+|+.|+|++|++..++...+.++..|+.|++++ |+++.++ .
T Consensus       347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp-~  424 (1081)
T KOG0618|consen  347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLP-D  424 (1081)
T ss_pred             ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhh-H
Confidence             0000       000    0 0000000000011223678888888888888888888888888888888 8888876 6


Q ss_pred             hhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccc--cCCCCCCCCCCCEEEccCCcc
Q psy3330         383 AFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH--LEASHFPLERISFLDLSDNPL  448 (608)
Q Consensus       383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~L~~N~~  448 (608)
                      ....+..|++|...+|+ +...|+  +..++.|+.+|++.|+|+.  +|+. .+.++|++||++||.+
T Consensus       425 tva~~~~L~tL~ahsN~-l~~fPe--~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  425 TVANLGRLHTLRAHSNQ-LLSFPE--LAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHHhhhhhHHHhhcCCc-eeechh--hhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCcc
Confidence            67778888888888886 888884  7889999999999999994  4433 3448999999999997

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=1e-23  Score=228.53  Aligned_cols=196  Identities=24%  Similarity=0.316  Sum_probs=104.1

Q ss_pred             ceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC
Q psy3330          32 KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS  111 (608)
Q Consensus        32 ~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~  111 (608)
                      ...++|++.+++++|..++++++.|++++|+++.+|..   .++|++|++++|+|+.+|..    .++|+.|++++|.++
T Consensus       203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLT  275 (788)
T ss_pred             CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCchh
Confidence            45677777777777777777777777777777776642   35666666666666665531    245566666666555


Q ss_pred             CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330         112 ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL  191 (608)
Q Consensus       112 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  191 (608)
                      .++. .   ..+|+.|++++|+++.++.    ..++|+.|++++|+                         ++.+|.   
T Consensus       276 ~Lp~-l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~-------------------------L~~Lp~---  319 (788)
T PRK15387        276 HLPA-L---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQ-------------------------LASLPA---  319 (788)
T ss_pred             hhhh-c---hhhcCEEECcCCccccccc----cccccceeECCCCc-------------------------cccCCC---
Confidence            5442 1   1345555555555554422    12344444444444                         444332   


Q ss_pred             cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCC
Q psy3330         192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA  271 (608)
Q Consensus       192 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~  271 (608)
                        ++ .+|+.|++++|.+++++.  +   ..+|+.|++++|+++.+++.    ..+|+.|++++|+++.+|..    ..+
T Consensus       320 --lp-~~L~~L~Ls~N~L~~LP~--l---p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l----~~~  383 (788)
T PRK15387        320 --LP-SELCKLWAYNNQLTSLPT--L---PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL----PSG  383 (788)
T ss_pred             --Cc-ccccccccccCccccccc--c---ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc----ccc
Confidence              11 224444445554444321  1   12455555555555544321    23455566666666665531    235


Q ss_pred             CCEEeccCCCCCccC
Q psy3330         272 LVNLDLSGNNFSNID  286 (608)
Q Consensus       272 L~~L~Ls~N~l~~~~  286 (608)
                      |+.|++++|+++.++
T Consensus       384 L~~LdLs~N~Lt~LP  398 (788)
T PRK15387        384 LKELIVSGNRLTSLP  398 (788)
T ss_pred             cceEEecCCcccCCC
Confidence            666666666665543

>KOG0618|consensus

Probab=99.91  E-value=6.9e-26  Score=237.77  Aligned_cols=388  Identities=23%  Similarity=0.272  Sum_probs=236.6

Q ss_pred             EEecCCCCccccCccC--ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCC----
Q psy3330          35 ASCTDAGLEVVPIQLN--PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN----  108 (608)
Q Consensus        35 v~C~~~~l~~ip~~~~--~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n----  108 (608)
                      ..-+...+..+|....  .+++++.|.+|.+..+|.++..+.+|++||+++|.+..+|.- +..+..++.+..++|    
T Consensus        73 ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~  151 (1081)
T KOG0618|consen   73 LNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNNEKIQ  151 (1081)
T ss_pred             cccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcchhhh
Confidence            3344455667776554  589999999999999999999999999999999999888763 334444444444444    


Q ss_pred             ---------------CCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCc
Q psy3330         109 ---------------EISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL  173 (608)
Q Consensus       109 ---------------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  173 (608)
                                     .+..-....+..+..  .|+|++|.+...   .+..+.+|+.+....|++..+..     .-++|
T Consensus       152 ~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~-----~g~~l  221 (1081)
T KOG0618|consen  152 RLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEI-----SGPSL  221 (1081)
T ss_pred             hhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEe-----cCcch
Confidence                           333222222333333  488999888732   34556777777777777766541     23566


Q ss_pred             cEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330         174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL  253 (608)
Q Consensus       174 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  253 (608)
                      +.|+..+|.++.+...   ..| .++++++++.|+++.++ .+... +.+|+.+....|.+..+ +..+...++|+.|..
T Consensus       222 ~~L~a~~n~l~~~~~~---p~p-~nl~~~dis~n~l~~lp-~wi~~-~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  222 TALYADHNPLTTLDVH---PVP-LNLQYLDISHNNLSNLP-EWIGA-CANLEALNANHNRLVAL-PLRISRITSLVSLSA  294 (1081)
T ss_pred             heeeeccCcceeeccc---ccc-ccceeeecchhhhhcch-HHHHh-cccceEecccchhHHhh-HHHHhhhhhHHHHHh
Confidence            7777777766633322   122 45677777777777666 45544 66777777777766544 334445566666666


Q ss_pred             cCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCC-CceeeccCCCC----------------CCCCCccccc
Q psy3330         254 SNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFS-LKLVKINLIPN----------------LDSIDQPLSL  316 (608)
Q Consensus       254 s~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~-L~~L~l~~~~~----------------l~~~~~~~~~  316 (608)
                      ..|.++.+|+ ...++..|++|+|..|++...++..|..... |+.|+.+.++.                +...+|.+..
T Consensus       295 ~~nel~yip~-~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  295 AYNELEYIPP-FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             hhhhhhhCCC-cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence            6666666664 3445666666666666666655543333221 33333221110                0002333332


Q ss_pred             CCchhhhcccccccc-----ccCC-----CC-CceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhc
Q psy3330         317 SLPPLLLSLSIPLAF-----SLTP-----LG-TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFV  385 (608)
Q Consensus       317 ~lp~~~~~~~~~~~~-----~~~~-----~~-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~  385 (608)
                      ..-+.+.....-.+.     .+..     .. .-.+++|+||+|+++.++ .....+..|++|.... |.+...+  .+.
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahs-N~l~~fP--e~~  449 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHS-NQLLSFP--ELA  449 (1081)
T ss_pred             cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcC-Cceeech--hhh
Confidence            221111111100000     0000     01 114589999999999998 8889999999999887 7777766  788


Q ss_pred             CCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCC
Q psy3330         386 DNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDN  446 (608)
Q Consensus       386 ~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N  446 (608)
                      .+++|+.+|+|.|+ +..+--..-..-++|++|||++|.-..++...+ .++++...++.-|
T Consensus       450 ~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            89999999999998 654332211122899999999997554444444 3566666777666

>PLN03210 Resistant to P

Probab=99.86  E-value=2.7e-20  Score=217.33  Aligned_cols=332  Identities=19%  Similarity=0.234  Sum_probs=165.1

Q ss_pred             ccccCCCccEEEeeCCCCc-------ccCccccccc-ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChh
Q psy3330          69 TLSFYIELRSLDLSVNKIN-------VLGSHNFEYQ-NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT  140 (608)
Q Consensus        69 ~~~~~~~L~~L~Ls~n~l~-------~i~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  140 (608)
                      +|.++++|+.|.+..+...       .++. .|..+ ++|+.|++.++.+..+|.. | ...+|+.|++++|++..+. .
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~-~  628 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLW-D  628 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccc-c
Confidence            4555666666666443211       1222 23332 3466666666666555532 3 3456666666666655542 2


Q ss_pred             hhCCCCCCcEEEccCCC-CCccCchhhhcCCCCccEEEccCCC-CCCCCcccccCCCCCCceEEEccCCC-CccccCCCc
Q psy3330         141 AFRDTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILKLDNNQ-ILDVPNNVLSNLPHQSLHYLYLNENL-IETVLDNSF  217 (608)
Q Consensus       141 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~  217 (608)
                      .+..+++|+.|+|+++. +..+  | .+..+++|+.|++++|. +..+|. .+..+  ++|+.|++++|. ++.++. .+
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~i--p-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L--~~L~~L~L~~c~~L~~Lp~-~i  701 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEI--P-DLSMATNLETLKLSDCSSLVELPS-SIQYL--NKLEDLDMSRCENLEILPT-GI  701 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcC--C-ccccCCcccEEEecCCCCccccch-hhhcc--CCCCEEeCCCCCCcCccCC-cC
Confidence            34555666666665543 3332  2 24555666666666543 233332 34444  346666666542 333322 22


Q ss_pred             cccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCC-------CccChhhh
Q psy3330         218 PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF-------SNIDSVAF  290 (608)
Q Consensus       218 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-------~~~~~~~f  290 (608)
                       . +++|+.|++++|......|.   ..++|+.|++++|.++.+|.. + .+++|+.|++.++..       ..+.+..+
T Consensus       702 -~-l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~  774 (1153)
T PLN03210        702 -N-LKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMT  774 (1153)
T ss_pred             -C-CCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccccc-c-cccccccccccccchhhccccccccchhhh
Confidence             2 55666666666543222121   134556666666666655532 1 345555555554321       11112222


Q ss_pred             CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCC-CCCcChhhhcccccccccc
Q psy3330         291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN-FSNIDSVAFKSLFSLKLVK  369 (608)
Q Consensus       291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~l~  369 (608)
                      ...++|+.|++++++.+        +.+|..+..+             .+|+.|++++|. +..++...  ++++|+.|+
T Consensus       775 ~~~~sL~~L~Ls~n~~l--------~~lP~si~~L-------------~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~  831 (1153)
T PLN03210        775 MLSPSLTRLFLSDIPSL--------VELPSSIQNL-------------HKLEHLEIENCINLETLPTGI--NLESLESLD  831 (1153)
T ss_pred             hccccchheeCCCCCCc--------cccChhhhCC-------------CCCCEEECCCCCCcCeeCCCC--CccccCEEE
Confidence            23345555555433221        1222222111             134555555542 33333222  456666666


Q ss_pred             cccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCC-CcccccCCCCCCCCCCCEEEccCCc
Q psy3330         370 INLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG-NSLSHLEASHFPLERISFLDLSDNP  447 (608)
Q Consensus       370 l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~L~~N~  447 (608)
                      ++.+..+..++.    ...+|+.|+|++|. +..+|.. +..+++|+.|+|++ |+++.+|.....+++|+.+++++++
T Consensus       832 Ls~c~~L~~~p~----~~~nL~~L~Ls~n~-i~~iP~s-i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        832 LSGCSRLRTFPD----ISTNISDLNLSRTG-IEEVPWW-IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCccccccc----cccccCEeECCCCC-CccChHH-HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            666555544322    12567777777775 6677765 56677777777776 3666777666666667666666543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.86  E-value=3.9e-20  Score=216.02  Aligned_cols=310  Identities=20%  Similarity=0.208  Sum_probs=164.3

Q ss_pred             CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCC-CCCCChhhhcCCCcCcEee
Q psy3330          50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE-ISALSKDTFKGLKELKTLD  128 (608)
Q Consensus        50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~  128 (608)
                      |++++.|.+.++.++.+|..+ ...+|+.|++++|++..++. .+..+++|+.|+|+++. +..++  .+..+++|+.|+
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~  663 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD-GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLK  663 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc-ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEE
Confidence            445666666666666666544 34566666666666655544 34556666666666543 34443  255556666666


Q ss_pred             ccCCcCCccChhhhCCCCCCcEEEccCC-CCCccCchhhhcCCCCccEEEccCCCCC-CCCcccccCCCCCCceEEEccC
Q psy3330         129 LSYNKISVINKTAFRDTLHLELLILSFN-NITYFEDSEIFSSLKSLRILKLDNNQIL-DVPNNVLSNLPHQSLHYLYLNE  206 (608)
Q Consensus       129 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~~~L~~L~L~~  206 (608)
                      |++|......|..+.++++|+.|++++| .+..++  ..+ ++++|+.|++++|... .+|.     .+ .+|+.|++++
T Consensus       664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp--~~i-~l~sL~~L~Lsgc~~L~~~p~-----~~-~nL~~L~L~~  734 (1153)
T PLN03210        664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP--TGI-NLKSLYRLNLSGCSRLKSFPD-----IS-TNISWLDLDE  734 (1153)
T ss_pred             ecCCCCccccchhhhccCCCCEEeCCCCCCcCccC--CcC-CCCCCCEEeCCCCCCcccccc-----cc-CCcCeeecCC
Confidence            6665432223445556666666666654 333332  222 4566666666655322 2221     11 3466666666


Q ss_pred             CCCccccCCCccccCCCccEEEccCCCCC-------ccCcccccCCCccCEEeccCCcC-CCCChhhhhCCCCCCEEecc
Q psy3330         207 NLIETVLDNSFPFTLTNLHTLALSSNIIS-------FINESSFVTLRTLHSLDLSNNNL-SAIPTKQLSKLSALVNLDLS  278 (608)
Q Consensus       207 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~~l~~L~~L~Ls  278 (608)
                      |.++.++.. + . +++|+.|.+.++...       .+.+..+..+++|+.|++++|.. ..+| ..++++++|+.|+++
T Consensus       735 n~i~~lP~~-~-~-l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls  810 (1153)
T PLN03210        735 TAIEEFPSN-L-R-LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIE  810 (1153)
T ss_pred             Ccccccccc-c-c-ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEECC
Confidence            665554322 1 1 455555555543211       11111222345666666666643 3344 356666677777776


Q ss_pred             CCC-CCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChh
Q psy3330         279 GNN-FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV  357 (608)
Q Consensus       279 ~N~-l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~  357 (608)
                      +|. ++.++.. . .+++|+.|+++++..+..+..                        ...++++|++++|.++.+|. 
T Consensus       811 ~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~------------------------~~~nL~~L~Ls~n~i~~iP~-  863 (1153)
T PLN03210        811 NCINLETLPTG-I-NLESLESLDLSGCSRLRTFPD------------------------ISTNISDLNLSRTGIEEVPW-  863 (1153)
T ss_pred             CCCCcCeeCCC-C-CccccCEEECCCCCccccccc------------------------cccccCEeECCCCCCccChH-
Confidence            653 4444332 2 466666666665544332211                        01134677777777776653 


Q ss_pred             hhcccccccccccccCCCCCcCChhhhcCCcccceeecccCcccccc
Q psy3330         358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQL  404 (608)
Q Consensus       358 ~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~l  404 (608)
                      .+..+++|+.|+++.|+++..++. ....+++|+.+++++|..+..+
T Consensus       864 si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        864 WIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             HHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCCcccccc
Confidence            466667777777766666666543 3445566666666666544433

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=8.7e-20  Score=199.49  Aligned_cols=245  Identities=23%  Similarity=0.336  Sum_probs=198.0

Q ss_pred             CceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCC
Q psy3330          31 QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI  110 (608)
Q Consensus        31 ~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i  110 (608)
                      ....+++.+.+++.+|..+|++++.|+|++|+++.+|..+.  .+|+.|++++|+++.+|...   .++|+.|+|++|++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L  253 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRI  253 (754)
T ss_pred             CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh---hccccEEECcCCcc
Confidence            34678888899999999999999999999999999997654  58999999999999988643   24799999999999


Q ss_pred             CCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccc
Q psy3330         111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV  190 (608)
Q Consensus       111 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  190 (608)
                      ..++.. +.  .+|+.|++++|+++.++. .+.  ++|+.|++++|+++.++  ..+.  ++|+.|++++|.++.+|...
T Consensus       254 ~~LP~~-l~--s~L~~L~Ls~N~L~~LP~-~l~--~sL~~L~Ls~N~Lt~LP--~~lp--~sL~~L~Ls~N~Lt~LP~~l  323 (754)
T PRK15370        254 TELPER-LP--SALQSLDLFHNKISCLPE-NLP--EELRYLSVYDNSIRTLP--AHLP--SGITHLNVQSNSLTALPETL  323 (754)
T ss_pred             CcCChh-Hh--CCCCEEECcCCccCcccc-ccC--CCCcEEECCCCccccCc--ccch--hhHHHHHhcCCccccCCccc
Confidence            998764 33  579999999999998754 332  58999999999999874  3332  47899999999999887543


Q ss_pred             ccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCC
Q psy3330         191 LSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLS  270 (608)
Q Consensus       191 ~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~  270 (608)
                          + ++|+.|++++|.+++++. .+   .++|+.|++++|.++.++. .+  .++|+.|++++|+++.+|+...   .
T Consensus       324 ----~-~sL~~L~Ls~N~Lt~LP~-~l---~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~~l~---~  388 (754)
T PRK15370        324 ----P-PGLKTLEAGENALTSLPA-SL---PPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPENLP---A  388 (754)
T ss_pred             ----c-ccceeccccCCccccCCh-hh---cCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCHhHH---H
Confidence                2 569999999999998654 33   3689999999999987643 33  3689999999999999987533   3


Q ss_pred             CCCEEeccCCCCCccChh---hhCCCCCCceeeccCCC
Q psy3330         271 ALVNLDLSGNNFSNIDSV---AFKSLFSLKLVKINLIP  305 (608)
Q Consensus       271 ~L~~L~Ls~N~l~~~~~~---~f~~l~~L~~L~l~~~~  305 (608)
                      .|+.|++++|+++.++..   .+..++++..+++.+++
T Consensus       389 sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            699999999999987542   33456788889886544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.3e-19  Score=196.87  Aligned_cols=230  Identities=22%  Similarity=0.268  Sum_probs=185.8

Q ss_pred             ceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC
Q psy3330          32 KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS  111 (608)
Q Consensus        32 ~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~  111 (608)
                      ...+.+.+..++.+|. +++++++|++++|+++.+|..   .++|+.|++++|.++.++..    ..+|+.|++++|+++
T Consensus       224 L~~L~L~~N~Lt~LP~-lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N~Lt  295 (788)
T PRK15387        224 ITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGNQLT  295 (788)
T ss_pred             CCEEEccCCcCCCCCC-CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc----hhhcCEEECcCCccc
Confidence            4678888899999996 678999999999999999853   46899999999999988762    367999999999999


Q ss_pred             CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330         112 ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL  191 (608)
Q Consensus       112 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  191 (608)
                      .++.    ..++|+.|++++|+++.++. .   ..+|+.|++++|.++.++  . +  ..+|+.|++++|+++.+|..  
T Consensus       296 ~LP~----~p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~N~L~~LP--~-l--p~~Lq~LdLS~N~Ls~LP~l--  360 (788)
T PRK15387        296 SLPV----LPPGLQELSVSDNQLASLPA-L---PSELCKLWAYNNQLTSLP--T-L--PSGLQELSVSDNQLASLPTL--  360 (788)
T ss_pred             cccc----cccccceeECCCCccccCCC-C---cccccccccccCcccccc--c-c--ccccceEecCCCccCCCCCC--
Confidence            8874    24789999999999998754 1   246889999999998874  2 1  25899999999999998752  


Q ss_pred             cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCC
Q psy3330         192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA  271 (608)
Q Consensus       192 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~  271 (608)
                         + .+++.|++++|.++.++..     ..+|+.|++++|.++.++..    .++|+.|++++|+++++|. .   ..+
T Consensus       361 ---p-~~L~~L~Ls~N~L~~LP~l-----~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-l---~~~  423 (788)
T PRK15387        361 ---P-SELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-L---PSG  423 (788)
T ss_pred             ---C-cccceehhhccccccCccc-----ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-c---hhh
Confidence               2 5689999999999876531     45799999999999876532    3689999999999999884 2   246


Q ss_pred             CCEEeccCCCCCccChhhhCCCCCCceeecc
Q psy3330         272 LVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN  302 (608)
Q Consensus       272 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~  302 (608)
                      |+.|++++|+++.++. .+..+++|+.|+++
T Consensus       424 L~~L~Ls~NqLt~LP~-sl~~L~~L~~LdLs  453 (788)
T PRK15387        424 LLSLSVYRNQLTRLPE-SLIHLSSETTVNLE  453 (788)
T ss_pred             hhhhhhccCcccccCh-HHhhccCCCeEECC
Confidence            8899999999998754 47777777666663

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1.3e-19  Score=198.08  Aligned_cols=204  Identities=21%  Similarity=0.359  Sum_probs=90.6

Q ss_pred             cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330          52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY  131 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  131 (608)
                      +.+.|+++++.++.+|..+.  ++|+.|+|++|+++.+|...+   .+|++|++++|+++.++.. +.  .+|+.|+|++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPAT-LP--DTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChh-hh--ccccEEECcC
Confidence            34455555555555554332  345555555555555544322   2455555555555554432 21  2455555555


Q ss_pred             CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330         132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET  211 (608)
Q Consensus       132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~  211 (608)
                      |.+..++.. +.  .+|+.|++++|+++.++  ..+.  .+|+.|++++|+++.+|...    + .+|+.|++++|.++.
T Consensus       251 N~L~~LP~~-l~--s~L~~L~Ls~N~L~~LP--~~l~--~sL~~L~Ls~N~Lt~LP~~l----p-~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        251 NRITELPER-LP--SALQSLDLFHNKISCLP--ENLP--EELRYLSVYDNSIRTLPAHL----P-SGITHLNVQSNSLTA  318 (754)
T ss_pred             CccCcCChh-Hh--CCCCEEECcCCccCccc--cccC--CCCcEEECCCCccccCcccc----h-hhHHHHHhcCCcccc
Confidence            555544322 11  24555555555555432  2121  24555555555555444321    1 234445555555444


Q ss_pred             ccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCcc
Q psy3330         212 VLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI  285 (608)
Q Consensus       212 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  285 (608)
                      ++...    .++|+.|++++|.++.++. .+  .++|+.|++++|+++.+|. .+  .++|+.|+|++|+++.+
T Consensus       319 LP~~l----~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        319 LPETL----PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNL  382 (754)
T ss_pred             CCccc----cccceeccccCCccccCCh-hh--cCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCC
Confidence            32211    1244444455544444321 11  1344444555444444442 11  13444444444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.62  E-value=1.1e-16  Score=162.62  Aligned_cols=280  Identities=24%  Similarity=0.255  Sum_probs=146.5

Q ss_pred             EEEeeCCCCcc-cCcccccccccccEEEccCCCCCCC----ChhhhcCCCcCcEeeccCCcCCcc------ChhhhCCCC
Q psy3330          78 SLDLSVNKINV-LGSHNFEYQNKLLNLNISYNEISAL----SKDTFKGLKELKTLDLSYNKISVI------NKTAFRDTL  146 (608)
Q Consensus        78 ~L~Ls~n~l~~-i~~~~f~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~  146 (608)
                      .|+|..+.++. -....|..+.+|++|+++++.++..    .+..+...+++++|+++++.+...      .+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            35666666652 2223455566677777777776432    122344556677777776665521      123444555


Q ss_pred             CCcEEEccCCCCCccCchhhhcCCCC---ccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccC-C
Q psy3330         147 HLELLILSFNNITYFEDSEIFSSLKS---LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL-T  222 (608)
Q Consensus       147 ~L~~L~L~~n~l~~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l-~  222 (608)
                      +|+.|++++|.+.... +..+..+.+   |++|++++|++.......                      ....+.. + +
T Consensus        82 ~L~~L~l~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~----------------------l~~~l~~-~~~  137 (319)
T cd00116          82 GLQELDLSDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRL----------------------LAKGLKD-LPP  137 (319)
T ss_pred             ceeEEEccCCCCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHH----------------------HHHHHHh-CCC
Confidence            6666666666655332 333333333   555555555443211000                      0011122 3 5


Q ss_pred             CccEEEccCCCCCcc----CcccccCCCccCEEeccCCcCCCCC----hhhhhCCCCCCEEeccCCCCCccChhh----h
Q psy3330         223 NLHTLALSSNIISFI----NESSFVTLRTLHSLDLSNNNLSAIP----TKQLSKLSALVNLDLSGNNFSNIDSVA----F  290 (608)
Q Consensus       223 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----f  290 (608)
                      +|+.|++++|.++..    ....+..+++|++|++++|.+++..    ...+..+++|+.|++++|.+++.....    +
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~  217 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL  217 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence            566666666665521    1223455566777777777766311    123445567777777777766443322    2


Q ss_pred             CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccc
Q psy3330         291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI  370 (608)
Q Consensus       291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l  370 (608)
                      ..+++|                                             ++|++++|.+++.....+..         
T Consensus       218 ~~~~~L---------------------------------------------~~L~ls~n~l~~~~~~~l~~---------  243 (319)
T cd00116         218 ASLKSL---------------------------------------------EVLNLGDNNLTDAGAAALAS---------  243 (319)
T ss_pred             cccCCC---------------------------------------------CEEecCCCcCchHHHHHHHH---------
Confidence            233333                                             44555666655422221110         


Q ss_pred             ccCCCCCcCChhhhcCCcccceeecccCcccc-----ccCcccCCCCCCCCEEEcCCCcccccCCC-----CCCC-CCCC
Q psy3330         371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLK-----QLPSKLFQGNTNLKSVSLKGNSLSHLEAS-----HFPL-ERIS  439 (608)
Q Consensus       371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~-----~lp~~~f~~l~~L~~L~L~~N~l~~l~~~-----~~~l-~~L~  439 (608)
                                 ......+.|+.|++++|. ++     .+... +..+++|+.+++++|.++.-+..     .... +.|+
T Consensus       244 -----------~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~  310 (319)
T cd00116         244 -----------ALLSPNISLLTLSLSCND-ITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE  310 (319)
T ss_pred             -----------HHhccCCCceEEEccCCC-CCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence                       001123677778888776 43     22222 44568899999999988844322     2223 6789


Q ss_pred             EEEccCCcc
Q psy3330         440 FLDLSDNPL  448 (608)
Q Consensus       440 ~L~L~~N~~  448 (608)
                      ++++.+|||
T Consensus       311 ~~~~~~~~~  319 (319)
T cd00116         311 SLWVKDDSF  319 (319)
T ss_pred             hcccCCCCC
Confidence            999999987

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.59  E-value=7.5e-16  Score=156.40  Aligned_cols=249  Identities=22%  Similarity=0.235  Sum_probs=172.9

Q ss_pred             ccccEEEeccCCCcc-----cccccccCCCccEEEeeCCCCccc------CcccccccccccEEEccCCCCCCCChhhhc
Q psy3330          51 PEVQTIILRENRISN-----VHYTLSFYIELRSLDLSVNKINVL------GSHNFEYQNKLLNLNISYNEISALSKDTFK  119 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~i------~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~  119 (608)
                      ..+++|+++++.++.     ++..+...+++++|+++++.+...      ....+..+++|+.|++++|.+....+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            348899999998853     455667788899999998877631      123566788999999999988765555565


Q ss_pred             CCCc---CcEeeccCCcCCcc----ChhhhCCC-CCCcEEEccCCCCCccC---chhhhcCCCCccEEEccCCCCCCCCc
Q psy3330         120 GLKE---LKTLDLSYNKISVI----NKTAFRDT-LHLELLILSFNNITYFE---DSEIFSSLKSLRILKLDNNQILDVPN  188 (608)
Q Consensus       120 ~l~~---L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~  188 (608)
                      .+.+   |++|++++|.++..    ....+..+ ++|+.|++++|.++...   ....+..+.+|++|++++|.+.+...
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            5555   99999999988732    22345566 88999999999988422   13456777889999999998874211


Q ss_pred             ----ccccCCCCCCceEEEccCCCCccccC----CCccccCCCccEEEccCCCCCccCccccc-----CCCccCEEeccC
Q psy3330         189 ----NVLSNLPHQSLHYLYLNENLIETVLD----NSFPFTLTNLHTLALSSNIISFINESSFV-----TLRTLHSLDLSN  255 (608)
Q Consensus       189 ----~~~~~l~~~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~  255 (608)
                          ..+...  ++|+.|++++|.+++...    ..+.. +++|+.|++++|.++......+.     ..+.|++|++++
T Consensus       183 ~~l~~~l~~~--~~L~~L~L~~n~i~~~~~~~l~~~~~~-~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~  259 (319)
T cd00116         183 RALAEGLKAN--CNLEVLDLNNNGLTDEGASALAETLAS-LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC  259 (319)
T ss_pred             HHHHHHHHhC--CCCCEEeccCCccChHHHHHHHHHhcc-cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence                122233  469999999998875432    23333 67899999999988753222221     247899999999


Q ss_pred             CcCCCCC----hhhhhCCCCCCEEeccCCCCCccChh----hhCCC-CCCceeecc
Q psy3330         256 NNLSAIP----TKQLSKLSALVNLDLSGNNFSNIDSV----AFKSL-FSLKLVKIN  302 (608)
Q Consensus       256 n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~~~----~f~~l-~~L~~L~l~  302 (608)
                      |.++...    ...+..+++|+.+++++|.++.....    ++... +.|+.+++.
T Consensus       260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            9887321    13456678899999999999865433    23333 567777664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.57  E-value=3.9e-17  Score=139.44  Aligned_cols=160  Identities=26%  Similarity=0.377  Sum_probs=86.0

Q ss_pred             cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330          72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL  151 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  151 (608)
                      ++++++.|.||+|+++.+|+ .++.+.+|+.|++++|+|+.+|+ .+..++.|+.|++.-|++..+ |..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~l-prgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcC-ccccCCCchhhhh
Confidence            34444555555555555554 24455555555555555555543 345555555555555555433 4455555555555


Q ss_pred             EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccC
Q psy3330         152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS  231 (608)
Q Consensus       152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  231 (608)
                      ||..|++.+-..|+.|..+..|+.|.+++|.+.-+|++ ++.+  ++|+.|.+..|.+-..+ ...+. +..|+.|.+++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~l--t~lqil~lrdndll~lp-keig~-lt~lrelhiqg  182 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKL--TNLQILSLRDNDLLSLP-KEIGD-LTRLRELHIQG  182 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhh--cceeEEeeccCchhhCc-HHHHH-HHHHHHHhccc
Confidence            55555555443355555555555555555555555443 3444  34555555555554443 23333 66777777777


Q ss_pred             CCCCccCc
Q psy3330         232 NIISFINE  239 (608)
Q Consensus       232 n~l~~~~~  239 (608)
                      |+++.++|
T Consensus       183 nrl~vlpp  190 (264)
T KOG0617|consen  183 NRLTVLPP  190 (264)
T ss_pred             ceeeecCh
Confidence            77776654

>KOG0617|consensus

Probab=99.55  E-value=9.3e-17  Score=137.17  Aligned_cols=158  Identities=27%  Similarity=0.428  Sum_probs=103.9

Q ss_pred             ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330          96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI  175 (608)
Q Consensus        96 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  175 (608)
                      ++..++.|.||+|+++.++|+ +..+.+|+.|++++|+|+.+ |..++.+++|+.|+++-|++...  |..|+.++.|++
T Consensus        31 ~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~~l--prgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLNIL--PRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhc-ChhhhhchhhhheecchhhhhcC--ccccCCCchhhh
Confidence            345666677777777777664 66677777777777777766 34556677777777777776665  466777777777


Q ss_pred             EEccCCCCCC--CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330         176 LKLDNNQILD--VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL  253 (608)
Q Consensus       176 L~L~~n~l~~--~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  253 (608)
                      ||+.+|++.+  +|.. |..+  +.|+.|+++.|.++-+++ ..+. +++|+.|.+.+|.+-.+ |..++.++.|++|++
T Consensus       107 ldltynnl~e~~lpgn-ff~m--~tlralyl~dndfe~lp~-dvg~-lt~lqil~lrdndll~l-pkeig~lt~lrelhi  180 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGN-FFYM--TTLRALYLGDNDFEILPP-DVGK-LTNLQILSLRDNDLLSL-PKEIGDLTRLRELHI  180 (264)
T ss_pred             hhccccccccccCCcc-hhHH--HHHHHHHhcCCCcccCCh-hhhh-hcceeEEeeccCchhhC-cHHHHHHHHHHHHhc
Confidence            7777776653  3332 3333  446677777777765543 3333 67777777777776655 455666777777777


Q ss_pred             cCCcCCCCCh
Q psy3330         254 SNNNLSAIPT  263 (608)
Q Consensus       254 s~n~l~~l~~  263 (608)
                      .+|+++.+||
T Consensus       181 qgnrl~vlpp  190 (264)
T KOG0617|consen  181 QGNRLTVLPP  190 (264)
T ss_pred             ccceeeecCh
Confidence            7777777775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=2e-12  Score=116.07  Aligned_cols=123  Identities=33%  Similarity=0.378  Sum_probs=35.7

Q ss_pred             cccEEEeccCCCcccccccc-cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          52 EVQTIILRENRISNVHYTLS-FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~~~~-~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      ++++|+|++|.|+.+.. ++ .+.+|+.|++++|.|+.++  .+..++.|++|++++|.|+.+.......+++|++|+++
T Consensus        20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             ----------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence            45666666666665542 22 3555666666666666554  24555666666666666665543222345566666666


Q ss_pred             CCcCCccCh-hhhCCCCCCcEEEccCCCCCccCc--hhhhcCCCCccEEE
Q psy3330         131 YNKISVINK-TAFRDTLHLELLILSFNNITYFED--SEIFSSLKSLRILK  177 (608)
Q Consensus       131 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~  177 (608)
                      +|+|..+.. ..+..+++|+.|++.+|++.....  ...+..+|+|+.||
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            666554433 344455666666666665544321  12344455555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=4.9e-12  Score=113.51  Aligned_cols=122  Identities=35%  Similarity=0.464  Sum_probs=44.4

Q ss_pred             cCCCcccccccccCCCccEEEeeCCCCcccCccccc-ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC
Q psy3330          60 ENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFE-YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN  138 (608)
Q Consensus        60 ~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  138 (608)
                      .+.|..++. +.+..+++.|+|++|.|+.|..  ++ .+.+|+.|+|++|.|+.+.  .+..++.|+.|++++|+|+.+.
T Consensus         6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             -------------------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-C
T ss_pred             ccccccccc-cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccc
Confidence            334444432 3456678999999999998864  33 5788999999999999886  3788899999999999999886


Q ss_pred             hhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330         139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV  186 (608)
Q Consensus       139 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  186 (608)
                      +.....+++|+.|++++|+|..+..-..+..+++|++|++.+|.+...
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            543346788999999999988876556677888888888888877644

>KOG1259|consensus

Probab=99.21  E-value=1.6e-12  Score=121.19  Aligned_cols=135  Identities=30%  Similarity=0.321  Sum_probs=80.7

Q ss_pred             cccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc
Q psy3330          70 LSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE  149 (608)
Q Consensus        70 ~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  149 (608)
                      +..+..|+.+|||+|.|+.++. +..-.|+++.|++|+|.|..+..  +..+++|+.||||+|.++.+..- =..+.+++
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGW-HLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchhhhhh-hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhh-HhhhcCEe
Confidence            4445566666666666666654 34556666666666666666543  55666666666666666655321 12455666


Q ss_pred             EEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCc-ccccCCCCCCceEEEccCCCCcccc
Q psy3330         150 LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN-NVLSNLPHQSLHYLYLNENLIETVL  213 (608)
Q Consensus       150 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L~L~~n~l~~~~  213 (608)
                      .|.|++|.+..+.   .++.+.+|..||+++|++..+.. ..++.+|.  |+.+.|.+|.+.+++
T Consensus       356 tL~La~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC--LE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  356 TLKLAQNKIETLS---GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC--LETLRLTGNPLAGSV  415 (490)
T ss_pred             eeehhhhhHhhhh---hhHhhhhheeccccccchhhHHHhcccccccH--HHHHhhcCCCccccc
Confidence            6666666666543   35566666666666666655432 23455543  666666666666554

>KOG3207|consensus

Probab=99.19  E-value=3.4e-12  Score=125.06  Aligned_cols=210  Identities=25%  Similarity=0.266  Sum_probs=88.2

Q ss_pred             cCCCccEEEeeCCCCcccCc-ccccccccccEEEccCCCCCCCCh--hhhcCCCcCcEeeccCCcCCccChh-hhCCCCC
Q psy3330          72 FYIELRSLDLSVNKINVLGS-HNFEYQNKLLNLNISYNEISALSK--DTFKGLKELKTLDLSYNKISVINKT-AFRDTLH  147 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~  147 (608)
                      ++.+|+.+.|.+..+...+. .....+++++.|||++|-+....+  .....+++|+.|+|+.|++...... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34455555555554443332 233345555555555554443211  1233455555555555554432221 1113445


Q ss_pred             CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEE
Q psy3330         148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL  227 (608)
Q Consensus       148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  227 (608)
                      |+.|.|+.|.++.-.........++|+.|++..|....+......-+  ..|+.|+|++|.+........-..++.|+.|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~--~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL--QTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh--hHHhhccccCCcccccccccccccccchhhh
Confidence            55555555555433222333444555555555553222211111111  3355555555554443322222224445555


Q ss_pred             EccCCCCCccCcccc------cCCCccCEEeccCCcCCCCCh-hhhhCCCCCCEEeccCCCCC
Q psy3330         228 ALSSNIISFINESSF------VTLRTLHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFS  283 (608)
Q Consensus       228 ~L~~n~l~~~~~~~~------~~l~~L~~L~Ls~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~  283 (608)
                      +++.+.+..+....-      ...++|++|++..|++...+. ..+..+++|+.|.+..|.+.
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            555555444322111      233445555555555443321 12333344444444444444

>PLN03150 hypothetical protein; Provisional

Probab=99.14  E-value=3.9e-11  Score=131.39  Aligned_cols=110  Identities=20%  Similarity=0.208  Sum_probs=71.8

Q ss_pred             eecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEE
Q psy3330         340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS  419 (608)
Q Consensus       340 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~  419 (608)
                      .++.|+|++|.+++..+..+..+++|+.|+++. +.+....+..+..+++|+.|+|++|++.+.+|.. ++.+++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence            367889999988887777777777777777666 5565555556666666666666666644556654 56666666666


Q ss_pred             cCCCccc-ccCCCCCC-CCCCCEEEccCCccccc
Q psy3330         420 LKGNSLS-HLEASHFP-LERISFLDLSDNPLHCD  451 (608)
Q Consensus       420 L~~N~l~-~l~~~~~~-l~~L~~L~L~~N~~~Cd  451 (608)
                      |++|+++ .+|..+.. ...+..+++++|+..|.
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCccccC
Confidence            6666666 55554432 23445666666666664

>KOG3207|consensus

Probab=99.14  E-value=8.8e-12  Score=122.23  Aligned_cols=220  Identities=25%  Similarity=0.276  Sum_probs=155.2

Q ss_pred             EEeeCCCCcccCcccc----cccccccEEEccCCCCCCCCh-hhhcCCCcCcEeeccCCcCCccCh--hhhCCCCCCcEE
Q psy3330          79 LDLSVNKINVLGSHNF----EYQNKLLNLNISYNEISALSK-DTFKGLKELKTLDLSYNKISVINK--TAFRDTLHLELL  151 (608)
Q Consensus        79 L~Ls~n~l~~i~~~~f----~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L  151 (608)
                      +.+++-.++.+.-+.+    +++.+|+.+.|.+..+...+. +....+++++.||||+|-+..+.+  .....+++|+.|
T Consensus        98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L  177 (505)
T KOG3207|consen   98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL  177 (505)
T ss_pred             hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhc
Confidence            3444444444433322    357899999999988876553 356789999999999999887644  345689999999


Q ss_pred             EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccc-ccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330         152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV-LSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS  230 (608)
Q Consensus       152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  230 (608)
                      +++.|++........-..+++|+.|.++.|+++.-.-.. ....  ++++.|+|+.|....+....... ++.|+.|+|+
T Consensus       178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f--Psl~~L~L~~N~~~~~~~~~~~i-~~~L~~LdLs  254 (505)
T KOG3207|consen  178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF--PSLEVLYLEANEIILIKATSTKI-LQTLQELDLS  254 (505)
T ss_pred             ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC--CcHHHhhhhcccccceecchhhh-hhHHhhcccc
Confidence            999999876543333446789999999999987322211 2223  67999999999644443334444 7789999999


Q ss_pred             CCCCCccCc-ccccCCCccCEEeccCCcCCCCChhh------hhCCCCCCEEeccCCCCCccCh-hhhCCCCCCceeec
Q psy3330         231 SNIISFINE-SSFVTLRTLHSLDLSNNNLSAIPTKQ------LSKLSALVNLDLSGNNFSNIDS-VAFKSLFSLKLVKI  301 (608)
Q Consensus       231 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~------~~~l~~L~~L~Ls~N~l~~~~~-~~f~~l~~L~~L~l  301 (608)
                      +|.+-..+. ...+.++.|+.|+++.+.++++....      ...+++|++|+++.|++..... ..+..+++|+.|.+
T Consensus       255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            998876542 34567889999999999998754222      3567899999999999976543 22344555665554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.3e-10  Score=121.56  Aligned_cols=200  Identities=37%  Similarity=0.483  Sum_probs=151.0

Q ss_pred             EEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCC-cCcEeeccCCcCCccChhhhCCCCCCcEEEccCC
Q psy3330          78 SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK-ELKTLDLSYNKISVINKTAFRDTLHLELLILSFN  156 (608)
Q Consensus        78 ~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  156 (608)
                      .+++..+.+..-.. ....++.++.|++.+|.++.+++. ...+. +|+.|++++|.+..++ ..+..+++|+.|+++.|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence            57777777632222 234457888999999999988753 34443 8999999999888773 45678889999999999


Q ss_pred             CCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCc
Q psy3330         157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF  236 (608)
Q Consensus       157 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  236 (608)
                      ++..++  ...+.+++|+.|++++|++..++... ...  ..++++.+++|.+...+ ..+.. +.++..+.+.+|++..
T Consensus       174 ~l~~l~--~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~--~~L~~l~~~~N~~~~~~-~~~~~-~~~l~~l~l~~n~~~~  246 (394)
T COG4886         174 DLSDLP--KLLSNLSNLNNLDLSGNKISDLPPEI-ELL--SALEELDLSNNSIIELL-SSLSN-LKNLSGLELSNNKLED  246 (394)
T ss_pred             hhhhhh--hhhhhhhhhhheeccCCccccCchhh-hhh--hhhhhhhhcCCcceecc-hhhhh-cccccccccCCceeee
Confidence            998874  33447788999999999999888742 111  44888999998543332 23333 7778888888888876


Q ss_pred             cCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330         237 INESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF  290 (608)
Q Consensus       237 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f  290 (608)
                      . +..+..+++++.|++++|.++.++.  +..+.+++.|++++|.+..+.+...
T Consensus       247 ~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         247 L-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             c-cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            4 4567788899999999999999985  8889999999999999988877544

>KOG1909|consensus

Probab=99.10  E-value=2.6e-11  Score=115.83  Aligned_cols=229  Identities=19%  Similarity=0.216  Sum_probs=129.6

Q ss_pred             ccccEEEeccCCCcc-----cccccccCCCccEEEeeCCCC----cccCc------ccccccccccEEEccCCCCCCCCh
Q psy3330          51 PEVQTIILRENRISN-----VHYTLSFYIELRSLDLSVNKI----NVLGS------HNFEYQNKLLNLNISYNEISALSK  115 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~-----l~~~~~~~~~L~~L~Ls~n~l----~~i~~------~~f~~l~~L~~L~Ls~n~i~~~~~  115 (608)
                      ..+++++|++|.+..     +.+.+...++|+..++++--.    ..+++      .++..+++|++|+||+|.+..-.+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            578999999999874     445677788899988876421    12332      245567899999999998774333


Q ss_pred             h----hhcCCCcCcEeeccCCcCCccChhhh-------------CCCCCCcEEEccCCCCCccCc---hhhhcCCCCccE
Q psy3330         116 D----TFKGLKELKTLDLSYNKISVINKTAF-------------RDTLHLELLILSFNNITYFED---SEIFSSLKSLRI  175 (608)
Q Consensus       116 ~----~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~  175 (608)
                      .    .+.++..|++|.|.+|.+.......+             +.-++|+++..++|++...+.   ...|...+.|+.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence            2    34567889999999998875544332             234566667766666654431   234555566666


Q ss_pred             EEccCCCCCCCC----cccccCCCCCCceEEEccCCCCccccC----CCccccCCCccEEEccCCCCCccCcccc-----
Q psy3330         176 LKLDNNQILDVP----NNVLSNLPHQSLHYLYLNENLIETVLD----NSFPFTLTNLHTLALSSNIISFINESSF-----  242 (608)
Q Consensus       176 L~L~~n~l~~~~----~~~~~~l~~~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----  242 (608)
                      +.+..|++..-.    ...+..+  +.|+.|||..|.++....    ..++. +++|+.|++++|.++.-...+|     
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~--~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~dcll~~~Ga~a~~~al~  266 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHC--PHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGDCLLENEGAIAFVDALK  266 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhC--CcceeeecccchhhhHHHHHHHHHhcc-cchheeecccccccccccHHHHHHHHh
Confidence            666666554211    1123333  335666666655543221    22333 4455555555555543222111     


Q ss_pred             cCCCccCEEeccCCcCCC----CChhhhhCCCCCCEEeccCCCC
Q psy3330         243 VTLRTLHSLDLSNNNLSA----IPTKQLSKLSALVNLDLSGNNF  282 (608)
Q Consensus       243 ~~l~~L~~L~Ls~n~l~~----l~~~~~~~l~~L~~L~Ls~N~l  282 (608)
                      .+.++|++|.+.+|.++.    ....+....+.|..|+|++|.+
T Consensus       267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            234455555555555543    1112233345555555555555

>KOG0532|consensus

Probab=99.09  E-value=4.6e-12  Score=127.92  Aligned_cols=175  Identities=30%  Similarity=0.366  Sum_probs=86.7

Q ss_pred             ccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccC
Q psy3330          76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF  155 (608)
Q Consensus        76 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  155 (608)
                      -...||+.|++..+|. .+..+..|+.+.|.+|.+..++. ++.++..|.+|+|+.|+++.++. .+..|+ |+.|.+++
T Consensus        77 t~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~lp~-~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPE-EACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSHLPD-GLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccccccCch-HHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhcCCh-hhhcCc-ceeEEEec
Confidence            3445555555555554 23444455555555555555542 45555555555555555555433 222332 55555555


Q ss_pred             CCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCC
Q psy3330         156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS  235 (608)
Q Consensus       156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  235 (608)
                      |+++.++  ..++.+.+|..|+.+.|.+..+++.. ..+  .+++.|.+..|++..++++.. . + .|..|+++.|++.
T Consensus       153 Nkl~~lp--~~ig~~~tl~~ld~s~nei~slpsql-~~l--~slr~l~vrRn~l~~lp~El~-~-L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  153 NKLTSLP--EEIGLLPTLAHLDVSKNEIQSLPSQL-GYL--TSLRDLNVRRNHLEDLPEELC-S-L-PLIRLDFSCNKIS  224 (722)
T ss_pred             CccccCC--cccccchhHHHhhhhhhhhhhchHHh-hhH--HHHHHHHHhhhhhhhCCHHHh-C-C-ceeeeecccCcee
Confidence            5555542  33445555555555555555555432 222  335555555555554443332 1 2 2445555555555


Q ss_pred             ccCcccccCCCccCEEeccCCcCCCCCh
Q psy3330         236 FINESSFVTLRTLHSLDLSNNNLSAIPT  263 (608)
Q Consensus       236 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~  263 (608)
                      .+ |-.|..++.|++|.|.+|.|++-|.
T Consensus       225 ~i-Pv~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  225 YL-PVDFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             ec-chhhhhhhhheeeeeccCCCCCChH
Confidence            44 3445555555555555555555443

>KOG0532|consensus

Probab=99.09  E-value=3.8e-12  Score=128.48  Aligned_cols=189  Identities=26%  Similarity=0.268  Sum_probs=158.3

Q ss_pred             ecCCCCccccCccC----ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCC
Q psy3330          37 CTDAGLEVVPIQLN----PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA  112 (608)
Q Consensus        37 C~~~~l~~ip~~~~----~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~  112 (608)
                      -++..+...|..-.    ......|++.|++..+|..+..+..|+.+.|..|.+..|++ .+.++..|++|+|+.|+++.
T Consensus        57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~  135 (722)
T KOG0532|consen   57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSH  135 (722)
T ss_pred             cccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhc
Confidence            34445555554332    35677899999999999988888899999999999999887 78899999999999999999


Q ss_pred             CChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccccc
Q psy3330         113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS  192 (608)
Q Consensus       113 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  192 (608)
                      ++... ..| -|+.|.+++|+++.++. .++.+.+|..||.+.|.+..+  +..++++.+|+.|.+..|++..+|+... 
T Consensus       136 lp~~l-C~l-pLkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~sl--psql~~l~slr~l~vrRn~l~~lp~El~-  209 (722)
T KOG0532|consen  136 LPDGL-CDL-PLKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSL--PSQLGYLTSLRDLNVRRNHLEDLPEELC-  209 (722)
T ss_pred             CChhh-hcC-cceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhc--hHHhhhHHHHHHHHHhhhhhhhCCHHHh-
Confidence            98754 333 58999999999998854 556889999999999999998  4668899999999999999999998754 


Q ss_pred             CCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCcc
Q psy3330         193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFI  237 (608)
Q Consensus       193 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  237 (608)
                      .++   |..||++.|++..++ ..|.. ++.|++|.|.+|.++.-
T Consensus       210 ~Lp---Li~lDfScNkis~iP-v~fr~-m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  210 SLP---LIRLDFSCNKISYLP-VDFRK-MRHLQVLQLENNPLQSP  249 (722)
T ss_pred             CCc---eeeeecccCceeecc-hhhhh-hhhheeeeeccCCCCCC
Confidence            555   999999999999874 56776 99999999999999864

>KOG0531|consensus

Probab=99.06  E-value=2.1e-11  Score=127.67  Aligned_cols=197  Identities=35%  Similarity=0.412  Sum_probs=90.3

Q ss_pred             CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330          73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI  152 (608)
Q Consensus        73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  152 (608)
                      +..++.+.+..|.+..+.. .+..+.+|+.|++.+|.|..+.. .+..+++|++|++++|.|+.+.+  +..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhhhhc-ccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhhe
Confidence            3444444455555544221 23444555555555555555442 13445555555555555555422  33344455555


Q ss_pred             ccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCC
Q psy3330         153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN  232 (608)
Q Consensus       153 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  232 (608)
                      +.+|.+..+.   .+..+..|+.+++++|++..+.......+  .+++.+++.+|.+..+.....   +..+..+++..|
T Consensus       147 l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~~~~~~--~~l~~l~l~~n~i~~i~~~~~---~~~l~~~~l~~n  218 (414)
T KOG0531|consen  147 LSGNLISDIS---GLESLKSLKLLDLSYNRIVDIENDELSEL--ISLEELDLGGNSIREIEGLDL---LKKLVLLSLLDN  218 (414)
T ss_pred             eccCcchhcc---CCccchhhhcccCCcchhhhhhhhhhhhc--cchHHHhccCCchhcccchHH---HHHHHHhhcccc
Confidence            5555555543   23445555555555555555444101122  335555555555544322111   223333345555


Q ss_pred             CCCccCcccccCCCc--cCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCc
Q psy3330         233 IISFINESSFVTLRT--LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN  284 (608)
Q Consensus       233 ~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  284 (608)
                      .++.+.+  +..+..  |+.+++++|++..++ ..+..+..+..|++.+|++..
T Consensus       219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  219 KISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             cceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccc
Confidence            5444322  111122  455555555555543 234444555555555555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=1.4e-10  Score=85.55  Aligned_cols=60  Identities=37%  Similarity=0.571  Sum_probs=36.7

Q ss_pred             CccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcC
Q psy3330          75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI  134 (608)
Q Consensus        75 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  134 (608)
                      +|++|++++|+++.++++.|.++++|++|++++|.++.+++++|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666666666666666666666666666666666666666666666666543

...

>KOG1259|consensus

Probab=99.03  E-value=4.8e-11  Score=111.45  Aligned_cols=209  Identities=25%  Similarity=0.266  Sum_probs=129.4

Q ss_pred             cccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc-CCccChhhhCC
Q psy3330          66 VHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK-ISVINKTAFRD  144 (608)
Q Consensus        66 l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~  144 (608)
                      +|..+.-+.+|+.+.++.+.-..|-. .-..-|.|+++...+..++..+.  +.....+....-+.-. .++.......-
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~~--l~pe~~~~D~~~~E~~t~~G~~~~~~dT  282 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVPS--LLPETILADPSGSEPSTSNGSALVSADT  282 (490)
T ss_pred             cccchHHhhhhheeeeeccchhheec-eeecCchhheeeeeccccccccc--ccchhhhcCccCCCCCccCCceEEecch
Confidence            34455667788888888875443322 11234678888887766554431  2112222222111111 11111111222


Q ss_pred             CCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCc
Q psy3330         145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNL  224 (608)
Q Consensus       145 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L  224 (608)
                      ...|+++||++|.|+.+.  ....-.++++.|++++|++..+..  +..+  .+|+.|||++|.++.+...-.  .+.++
T Consensus       283 Wq~LtelDLS~N~I~~iD--ESvKL~Pkir~L~lS~N~i~~v~n--La~L--~~L~~LDLS~N~Ls~~~Gwh~--KLGNI  354 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQID--ESVKLAPKLRRLILSQNRIRTVQN--LAEL--PQLQLLDLSGNLLAECVGWHL--KLGNI  354 (490)
T ss_pred             Hhhhhhccccccchhhhh--hhhhhccceeEEeccccceeeehh--hhhc--ccceEeecccchhHhhhhhHh--hhcCE
Confidence            345778888888887774  456667788888888888877655  4455  458888888887776643222  26778


Q ss_pred             cEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCCh-hhhhCCCCCCEEeccCCCCCccCh
Q psy3330         225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDS  287 (608)
Q Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~  287 (608)
                      ++|.+++|.+..+  ..+..+-+|..||+++|++..+.. ..++++|-|+.+.|.+|++.++..
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            8888888887654  335566678888888888876532 357778888888888888887765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.03  E-value=2.3e-10  Score=119.60  Aligned_cols=200  Identities=35%  Similarity=0.406  Sum_probs=153.3

Q ss_pred             EEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccc-cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330          55 TIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQN-KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK  133 (608)
Q Consensus        55 ~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  133 (608)
                      .+++..+.+..-...+...+.++.|++.+|.++.+++. ..... +|+.|++++|.+..++ ..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhh-hhhhccccccccccCCch
Confidence            46666676644444455668899999999999999873 44453 8999999999999885 347889999999999999


Q ss_pred             CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcccc
Q psy3330         134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVL  213 (608)
Q Consensus       134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~  213 (608)
                      +..+++. ...+++|+.|++++|++..++  ........|++|.+++|.+...+.. +..+  ..+..+.+.+|++... 
T Consensus       175 l~~l~~~-~~~~~~L~~L~ls~N~i~~l~--~~~~~~~~L~~l~~~~N~~~~~~~~-~~~~--~~l~~l~l~~n~~~~~-  247 (394)
T COG4886         175 LSDLPKL-LSNLSNLNNLDLSGNKISDLP--PEIELLSALEELDLSNNSIIELLSS-LSNL--KNLSGLELSNNKLEDL-  247 (394)
T ss_pred             hhhhhhh-hhhhhhhhheeccCCccccCc--hhhhhhhhhhhhhhcCCcceecchh-hhhc--ccccccccCCceeeec-
Confidence            9988553 236788999999999999985  3345566799999999964444332 3444  4577778888887764 


Q ss_pred             CCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhh
Q psy3330         214 DNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL  266 (608)
Q Consensus       214 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  266 (608)
                      +..... +++++.|++++|.++.+..  +..+.+++.|++++|.+..+++...
T Consensus       248 ~~~~~~-l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         248 PESIGN-LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cchhcc-ccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            234444 7889999999999998865  8889999999999999998876443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=3.5e-10  Score=83.51  Aligned_cols=61  Identities=38%  Similarity=0.549  Sum_probs=48.3

Q ss_pred             ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCC
Q psy3330          98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI  158 (608)
Q Consensus        98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  158 (608)
                      ++|++|++++|+++.+++++|.++++|++|++++|+++.+++.+|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677888888888888877788888888888888888888777888888888888877764

...

>KOG1909|consensus

Probab=98.93  E-value=3.7e-10  Score=108.12  Aligned_cols=233  Identities=19%  Similarity=0.170  Sum_probs=169.4

Q ss_pred             ccccCCCccEEEeeCCCCccc----CcccccccccccEEEccCCCCC----CCCh------hhhcCCCcCcEeeccCCcC
Q psy3330          69 TLSFYIELRSLDLSVNKINVL----GSHNFEYQNKLLNLNISYNEIS----ALSK------DTFKGLKELKTLDLSYNKI  134 (608)
Q Consensus        69 ~~~~~~~L~~L~Ls~n~l~~i----~~~~f~~l~~L~~L~Ls~n~i~----~~~~------~~~~~l~~L~~L~Ls~n~l  134 (608)
                      .+.....++.++|++|.+..-    ....+.+.++|+..++++--..    .+++      .++.+++.|++|+||.|-+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            345677899999999998742    2235667789999999864222    2221      3556778999999999998


Q ss_pred             CccChh----hhCCCCCCcEEEccCCCCCccCchhh-------------hcCCCCccEEEccCCCCCCCCcc----cccC
Q psy3330         135 SVINKT----AFRDTLHLELLILSFNNITYFEDSEI-------------FSSLKSLRILKLDNNQILDVPNN----VLSN  193 (608)
Q Consensus       135 ~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~----~~~~  193 (608)
                      ..-...    -+..+..|++|+|.+|.+.... ...             .+.-++|+++..++|++..-+..    .|..
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a-g~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEA-GGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhH-HHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            754443    3456889999999999886543 222             34567899999999999876654    3444


Q ss_pred             CCCCCceEEEccCCCCcccc----CCCccccCCCccEEEccCCCCCcc----CcccccCCCccCEEeccCCcCCCCChhh
Q psy3330         194 LPHQSLHYLYLNENLIETVL----DNSFPFTLTNLHTLALSSNIISFI----NESSFVTLRTLHSLDLSNNNLSAIPTKQ  265 (608)
Q Consensus       194 l~~~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  265 (608)
                      .  +.++.+.++.|.|..-.    ...|.. +++|+.|+|.+|.++..    ...++..+++|++|++++|.++.--..+
T Consensus       184 ~--~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  184 H--PTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             c--cccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            4  56999999999886432    234565 89999999999998742    2345677889999999999998633222


Q ss_pred             -----hhCCCCCCEEeccCCCCCccC----hhhhCCCCCCceeeccCCC
Q psy3330         266 -----LSKLSALVNLDLSGNNFSNID----SVAFKSLFSLKLVKINLIP  305 (608)
Q Consensus       266 -----~~~l~~L~~L~Ls~N~l~~~~----~~~f~~l~~L~~L~l~~~~  305 (608)
                           -...|+|+.|.+.+|.++.-.    ..+....+.|+.|+++++.
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence                 234789999999999998432    2334567899999997543

>KOG0531|consensus

Probab=98.90  E-value=2.5e-10  Score=119.64  Aligned_cols=238  Identities=32%  Similarity=0.351  Sum_probs=179.9

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      ..+..+.++.|.+..+...+..+.+|+.|++.+|+|..+... +..+++|++|++++|.|+.+..  +..++.|+.|+++
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLS  148 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhheec
Confidence            457777888999988666788899999999999999988752 6789999999999999999874  6778889999999


Q ss_pred             CCcCCccChhhhCCCCCCcEEEccCCCCCccCch-hhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC
Q psy3330         131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDS-EIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI  209 (608)
Q Consensus       131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l  209 (608)
                      +|.|+.+.  .+..++.|+.+++++|.+..+. + . ...+.+++.+.+.+|.+..+......    ..+..+++..|.+
T Consensus       149 ~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie-~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~----~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  149 GNLISDIS--GLESLKSLKLLDLSYNRIVDIE-NDE-LSELISLEELDLGGNSIREIEGLDLL----KKLVLLSLLDNKI  220 (414)
T ss_pred             cCcchhcc--CCccchhhhcccCCcchhhhhh-hhh-hhhccchHHHhccCCchhcccchHHH----HHHHHhhcccccc
Confidence            99999874  4556899999999999999886 3 2 57788999999999998877653322    3355668888888


Q ss_pred             ccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccCh--
Q psy3330         210 ETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS--  287 (608)
Q Consensus       210 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--  287 (608)
                      +.+.+..... ..+|+.+++++|.+.... ..+..+..+..|++.+|++..+.  .+...+.+..+....|++.....  
T Consensus       221 ~~~~~l~~~~-~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  296 (414)
T KOG0531|consen  221 SKLEGLNELV-MLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAIS  296 (414)
T ss_pred             eeccCcccch-hHHHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhh
Confidence            8765433211 113899999999988653 45667788999999999988875  35666777888888887663321  


Q ss_pred             -hh-hCCCCCCceeeccC
Q psy3330         288 -VA-FKSLFSLKLVKINL  303 (608)
Q Consensus       288 -~~-f~~l~~L~~L~l~~  303 (608)
                       .. -...+.++...+..
T Consensus       297 ~~~~~~~~~~~~~~~~~~  314 (414)
T KOG0531|consen  297 QEYITSAAPTLVTLTLEL  314 (414)
T ss_pred             cccccccccccccccccc
Confidence             11 23445555555543

>TIGR00864 PCC polycystin cation channel protein

Probab=98.77  E-value=4.2e-09  Score=125.06  Aligned_cols=83  Identities=24%  Similarity=0.392  Sum_probs=69.5

Q ss_pred             EcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhh
Q psy3330         419 SLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDR  497 (608)
Q Consensus       419 ~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (608)
                      ||++|+|+.||++.| .+++|+.|+|++|||.|||.+.||..|++.+..                               
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v-------------------------------   49 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGV-------------------------------   49 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCc-------------------------------
Confidence            689999999999888 588999999999999999999999999984310                               


Q ss_pred             hhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCcc
Q psy3330         498 IIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNT  539 (608)
Q Consensus       498 ~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~~  539 (608)
                             .........|.+|+.++|+++.+++..++.|....
T Consensus        50 -------~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C~~~y   84 (2740)
T TIGR00864        50 -------KVRQPEAALCAGPGALAGQPLLGIPLLDSGCDEEY   84 (2740)
T ss_pred             -------cccCCcccCCCCChHHCCCCcccCCcccCCCCCcc
Confidence                   01122467899999999999999999888897654

Note: this model has been restricted to the amino half because for technical reasons.

>KOG4658|consensus

Probab=98.76  E-value=9.4e-09  Score=115.23  Aligned_cols=139  Identities=27%  Similarity=0.280  Sum_probs=106.1

Q ss_pred             CCCccccCcc-CccccEEEeccCCCcccccccccCCCccEEEeeCCC--CcccCcccccccccccEEEccCCC-CCCCCh
Q psy3330          40 AGLEVVPIQL-NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNK--INVLGSHNFEYQNKLLNLNISYNE-ISALSK  115 (608)
Q Consensus        40 ~~l~~ip~~~-~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~--l~~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~  115 (608)
                      .++..+|... +..++.+.+.+|.+..++.+. .+++|++|-+..|.  +..++...|..++.|++|||++|. +..+| 
T Consensus       511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-  588 (889)
T KOG4658|consen  511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-  588 (889)
T ss_pred             cCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-
Confidence            4555566443 357888999988888776543 34478888888886  788888888899999999999775 44554 


Q ss_pred             hhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCC
Q psy3330         116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ  182 (608)
Q Consensus       116 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  182 (608)
                      ..++++-+||+|++++..++.+ |..++++..|.+|++..+...... ++....+.+||+|.+....
T Consensus       589 ~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  589 SSIGELVHLRYLDLSDTGISHL-PSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hHHhhhhhhhcccccCCCcccc-chHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence            5788899999999999988877 567788888999999887655554 6677778888888886544

>KOG4658|consensus

Probab=98.74  E-value=1.3e-08  Score=114.24  Aligned_cols=130  Identities=28%  Similarity=0.318  Sum_probs=98.8

Q ss_pred             cCCCccEEEeeCCCCcccCcccccccccccEEEccCCC--CCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc
Q psy3330          72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE--ISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE  149 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  149 (608)
                      +....+...+-+|.+..++..  ...++|++|-+..|.  +..++.+.|..++.|+.|||++|.=-+-.|..++.+.+|+
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             chhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            346678888888888776653  234579899998886  7778877788899999999998754444477888899999


Q ss_pred             EEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCC
Q psy3330         150 LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN  207 (608)
Q Consensus       150 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n  207 (608)
                      +|+++++.+..+  |..++++.+|.+|++..+.-...++.....+  .+|++|.+...
T Consensus       599 yL~L~~t~I~~L--P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~s  652 (889)
T KOG4658|consen  599 YLDLSDTGISHL--PSGLGNLKKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPRS  652 (889)
T ss_pred             cccccCCCcccc--chHHHHHHhhheeccccccccccccchhhhc--ccccEEEeecc
Confidence            999999998877  5778899999999998876555555555555  55777777654

>PLN03150 hypothetical protein; Provisional

Probab=98.68  E-value=4.7e-08  Score=107.33  Aligned_cols=108  Identities=22%  Similarity=0.254  Sum_probs=80.9

Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL  178 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  178 (608)
                      .++.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++.. |..++++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEEC
Confidence            3677888888887766677888888888888888888777777888888888888888888766 677888888888888


Q ss_pred             cCCCCCCCCcccccCCCCCCceEEEccCCC
Q psy3330         179 DNNQILDVPNNVLSNLPHQSLHYLYLNENL  208 (608)
Q Consensus       179 ~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~  208 (608)
                      ++|++.+..+..+.... ..+..+++.+|.
T Consensus       498 s~N~l~g~iP~~l~~~~-~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRL-LHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhcc-ccCceEEecCCc
Confidence            88888755554444332 335677777764

>KOG1859|consensus

Probab=98.44  E-value=3.4e-09  Score=110.30  Aligned_cols=129  Identities=29%  Similarity=0.352  Sum_probs=90.2

Q ss_pred             cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330          52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY  131 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  131 (608)
                      .+...+++.|.+..+..++.-++.|+.|+|++|+++...  .+..+++|++|||++|.+..++.-...++. |+.|.|++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            456667777777777777777777888888888777765  567777888888888877777654444444 77788888


Q ss_pred             CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC
Q psy3330         132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD  185 (608)
Q Consensus       132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  185 (608)
                      |.++.+  ..+.++.+|+.||++.|-+.+...-..+..+..|+.|.|.+|.+..
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            777765  4456777777788887776665433345556677777777776643

>KOG1644|consensus

Probab=98.43  E-value=3.1e-07  Score=81.70  Aligned_cols=106  Identities=25%  Similarity=0.249  Sum_probs=48.1

Q ss_pred             ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330          53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      =+.++|++.++..+..--.-..+...+||++|.+..++  .|..++.|.+|.|.+|+|+.|.+..-.-+++|+.|.|.+|
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            34455555554443321111223344555555554433  2444555555555555555555443333444555555555


Q ss_pred             cCCccCh-hhhCCCCCCcEEEccCCCCCc
Q psy3330         133 KISVINK-TAFRDTLHLELLILSFNNITY  160 (608)
Q Consensus       133 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  160 (608)
                      .|..+.. ..+..+++|++|.+-+|..+.
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhc
Confidence            5444322 233344455555555544443

>KOG1859|consensus

Probab=98.40  E-value=2.8e-09  Score=110.94  Aligned_cols=102  Identities=29%  Similarity=0.393  Sum_probs=51.0

Q ss_pred             ccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccC
Q psy3330          76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF  155 (608)
Q Consensus        76 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  155 (608)
                      |...+.++|.+..++. ++.-++.|+.|+|++|+++...  .+..++.|++|||++|.+..++.....++. |+.|.+.+
T Consensus       166 L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            3444444444444333 3444555555555555555443  355555555555555555555433333332 55555555


Q ss_pred             CCCCccCchhhhcCCCCccEEEccCCCCC
Q psy3330         156 NNITYFEDSEIFSSLKSLRILKLDNNQIL  184 (608)
Q Consensus       156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  184 (608)
                      |.++.+.   .+.++.+|+.||+++|-+.
T Consensus       242 N~l~tL~---gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  242 NALTTLR---GIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             cHHHhhh---hHHhhhhhhccchhHhhhh
Confidence            5555442   2445555555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.33  E-value=1.3e-06  Score=75.48  Aligned_cols=118  Identities=21%  Similarity=0.382  Sum_probs=55.0

Q ss_pred             ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCC
Q psy3330          69 TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHL  148 (608)
Q Consensus        69 ~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  148 (608)
                      .|.++.+|+.+.+.. .++.|+..+|.++++|+.+++.++ +..+...+|.++++|+.+.+.+ .+..+....|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            455566666666653 566666666666666666666553 6666666666666666666654 5555555666666666


Q ss_pred             cEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccC
Q psy3330         149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSN  193 (608)
Q Consensus       149 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  193 (608)
                      +.+++..+ +..+. ...|.+. +|+.+.+.. .+..++..+|.+
T Consensus        84 ~~i~~~~~-~~~i~-~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~  124 (129)
T PF13306_consen   84 KNIDIPSN-ITEIG-SSSFSNC-NLKEINIPS-NITKIEENAFKN  124 (129)
T ss_dssp             CEEEETTT--BEEH-TTTTTT--T--EEE-TT-B-SS----GGG-
T ss_pred             cccccCcc-ccEEc-hhhhcCC-CceEEEECC-CccEECCccccc
Confidence            66666554 44444 4555555 666665554 344444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.29  E-value=1.6e-06  Score=74.94  Aligned_cols=101  Identities=21%  Similarity=0.406  Sum_probs=54.5

Q ss_pred             ccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhh
Q psy3330          88 VLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF  167 (608)
Q Consensus        88 ~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  167 (608)
                      .|+..+|.++.+|+.+.+.. .+..+...+|.++.+|+.+.+..+ +..+...+|.++++|+.+.+.. .+..+. ...|
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~-~~~F   77 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG-DNAF   77 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTT
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc-cccc
Confidence            45666777777777777764 566777777777777777777664 6777667777776777777754 444444 4556


Q ss_pred             cCCCCccEEEccCCCCCCCCcccccC
Q psy3330         168 SSLKSLRILKLDNNQILDVPNNVLSN  193 (608)
Q Consensus       168 ~~l~~L~~L~L~~n~l~~~~~~~~~~  193 (608)
                      ..+++|+.+.+..+ +..++...|.+
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~  102 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSN  102 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT
T ss_pred             cccccccccccCcc-ccEEchhhhcC
Confidence            66666666666543 44444444433

>KOG1644|consensus

Probab=98.24  E-value=1.9e-06  Score=76.85  Aligned_cols=108  Identities=27%  Similarity=0.271  Sum_probs=85.2

Q ss_pred             ccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccC
Q psy3330          76 LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF  155 (608)
Q Consensus        76 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  155 (608)
                      =+.++|.+.++..+..- =.-..+...+||++|.+..+.  .|..++.|..|.|++|+|+.+.+.--.-+++|+.|.|.+
T Consensus        21 e~e~~LR~lkip~ienl-g~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENL-GATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchhhc-cccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            46778888777666541 112456788999999988775  488899999999999999999887666778899999999


Q ss_pred             CCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330         156 NNITYFEDSEIFSSLKSLRILKLDNNQILDV  186 (608)
Q Consensus       156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  186 (608)
                      |.+..+.+-..+..+++|++|.+-+|.++.-
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k  128 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHK  128 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcc
Confidence            9998876556677888889888888876644

>KOG4579|consensus

Probab=98.22  E-value=1.5e-07  Score=78.29  Aligned_cols=109  Identities=20%  Similarity=0.235  Sum_probs=81.2

Q ss_pred             cccEEEeccCCCccccc---ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEee
Q psy3330          52 EVQTIILRENRISNVHY---TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD  128 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~---~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  128 (608)
                      .+..++|+.+.+-.++.   .+....+|+..+|++|.+...|+..-...+.++.|+|++|.|+.+|.. +..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            45567777777776664   345566777788888888888876666677888888888888888765 88888888888


Q ss_pred             ccCCcCCccChhhhCCCCCCcEEEccCCCCCccC
Q psy3330         129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFE  162 (608)
Q Consensus       129 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  162 (608)
                      ++.|.+... +..+..+.++-.|+..+|.+..++
T Consensus       107 l~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  107 LRFNPLNAE-PRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cccCccccc-hHHHHHHHhHHHhcCCCCccccCc
Confidence            888887765 344445777888888888777765

>KOG2982|consensus

Probab=98.21  E-value=9.9e-07  Score=83.05  Aligned_cols=204  Identities=20%  Similarity=0.252  Sum_probs=105.3

Q ss_pred             cccccEEEccCCCCCCCC--hhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330          97 QNKLLNLNISYNEISALS--KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR  174 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  174 (608)
                      .+.++.|||..|.|+.-.  ...+.+++.|+.|+|+.|.+...+...-..+.+|+.|-|.+..+...........++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            445666666666655321  123455666666666666655432211124456666666666554433234455666666


Q ss_pred             EEEccCCCCCCCC--cccccCCCCCCceEEEccCCCCccccC-CCccccCCCccEEEccCCCCCcc-CcccccCCCccCE
Q psy3330         175 ILKLDNNQILDVP--NNVLSNLPHQSLHYLYLNENLIETVLD-NSFPFTLTNLHTLALSSNIISFI-NESSFVTLRTLHS  250 (608)
Q Consensus       175 ~L~L~~n~l~~~~--~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  250 (608)
                      +|.++.|.+..+-  ........ +.+.++....|....-.. .....-++++..+-+..|.+... ....+..++.+..
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s-~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWS-TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhccchhhhhccccccccccc-hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            6666666443221  11111111 234444444432211000 00011145677777777766543 2344556667777


Q ss_pred             EeccCCcCCCCCh-hhhhCCCCCCEEeccCCCCCccCh----h--hhCCCCCCceeec
Q psy3330         251 LDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDS----V--AFKSLFSLKLVKI  301 (608)
Q Consensus       251 L~Ls~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~----~--~f~~l~~L~~L~l  301 (608)
                      |+|+.|++.+... +.+.+++.|..|.+++|++..--.    .  -++.+++++.|+=
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            8888888876321 457778888888888887653221    1  1355666666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.15  E-value=1.7e-06  Score=80.41  Aligned_cols=220  Identities=19%  Similarity=0.178  Sum_probs=111.8

Q ss_pred             ccccEEEeccCCCcc-----cccccccCCCccEEEeeCCCCcc----cC------cccccccccccEEEccCCCCCCCCh
Q psy3330          51 PEVQTIILRENRISN-----VHYTLSFYIELRSLDLSVNKINV----LG------SHNFEYQNKLLNLNISYNEISALSK  115 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~----i~------~~~f~~l~~L~~L~Ls~n~i~~~~~  115 (608)
                      ..++.++||+|.|.+     +...+.+-.+|+..++++-....    ++      ..++.++|.|+..+||+|.+..-.+
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            567888888888874     33456666777777776542221    11      1245567777778887777663322


Q ss_pred             ----hhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330         116 ----DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL  191 (608)
Q Consensus       116 ----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  191 (608)
                          +.+..-..|.+|.+++|.+..+....++.  .|..  |..|        .-..+-+.|+++....|++...+....
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n--------KKaa~kp~Le~vicgrNRlengs~~~~  177 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN--------KKAADKPKLEVVICGRNRLENGSKELS  177 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH--------hhhccCCCceEEEeccchhccCcHHHH
Confidence                23445566777777777766554433321  0000  0000        011223455555555555544332211


Q ss_pred             cCC--CCCCceEEEccCCCCcccc-----CCCccccCCCccEEEccCCCCCccCc----ccccCCCccCEEeccCCcCCC
Q psy3330         192 SNL--PHQSLHYLYLNENLIETVL-----DNSFPFTLTNLHTLALSSNIISFINE----SSFVTLRTLHSLDLSNNNLSA  260 (608)
Q Consensus       192 ~~l--~~~~L~~L~L~~n~l~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~  260 (608)
                      ...  .+..++.+.+..|.|....     ...... +.+|+.|++++|.++....    .++...+.|+.|.+.+|.++.
T Consensus       178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            100  0023555555555543210     011122 5677777777777653222    233444556777777776654


Q ss_pred             CChhh-h-----hCCCCCCEEeccCCCCC
Q psy3330         261 IPTKQ-L-----SKLSALVNLDLSGNNFS  283 (608)
Q Consensus       261 l~~~~-~-----~~l~~L~~L~Ls~N~l~  283 (608)
                      --..+ +     ...|+|..|...+|.+.
T Consensus       257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         257 EGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             ccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            22211 1     12456677777776654

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=98.10  E-value=1.2e-06  Score=61.81  Aligned_cols=51  Identities=27%  Similarity=0.599  Sum_probs=38.8

Q ss_pred             CccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcc
Q psy3330         446 NPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEV  525 (608)
Q Consensus       446 N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~  525 (608)
                      |||.|||.+.||..|++.+                                       ........+.|.+|++++ .++
T Consensus         1 NP~~CdC~l~~~~~w~~~~---------------------------------------~~~~~~~~~~C~~P~~~~-~~l   40 (51)
T smart00082        1 NPFICDCELRWLLRWLQAN---------------------------------------EHLQDPVSLRCASPSSLR-GPL   40 (51)
T ss_pred             CCccCcCCchHHHHHHHhC---------------------------------------CccCCCCCCEeCCcHHHH-hHH
Confidence            8999999999999999731                                       001122478999999998 568


Q ss_pred             cccCCCccccC
Q psy3330         526 KAVPENSVHCE  536 (608)
Q Consensus       526 ~~~~~~~~~C~  536 (608)
                      .++..+++.|.
T Consensus        41 ~~~~~~~~~C~   51 (51)
T smart00082       41 LELLHSEFKCP   51 (51)
T ss_pred             HcCCHhhCCCc
Confidence            88887777774

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.07  E-value=2.9e-06  Score=57.26  Aligned_cols=41  Identities=24%  Similarity=0.479  Sum_probs=29.3

Q ss_pred             cccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCC
Q psy3330         388 IQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA  430 (608)
Q Consensus       388 ~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~  430 (608)
                      ++|++|++++|+ ++++|+. ++++++|+.|++++|+|+.+++
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPE-LSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCC-CcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence            357778888886 7778775 6778888888888888776653

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=5.8e-06  Score=55.76  Aligned_cols=38  Identities=39%  Similarity=0.466  Sum_probs=18.0

Q ss_pred             CccEEEeeCCCCcccCcccccccccccEEEccCCCCCCC
Q psy3330          75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL  113 (608)
Q Consensus        75 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~  113 (608)
                      +|++|++++|+|+++++ .++++++|++|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            34555555555555443 344555555555555555443

...

>KOG2120|consensus

Probab=97.98  E-value=2.6e-07  Score=86.86  Aligned_cols=175  Identities=22%  Similarity=0.105  Sum_probs=87.2

Q ss_pred             CcEeeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCC-CCCCCCcc-cccCCCCCCce
Q psy3330         124 LKTLDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN-QILDVPNN-VLSNLPHQSLH  200 (608)
Q Consensus       124 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~~~L~  200 (608)
                      |++||||+..|+.-. ...+..+.+|+.|.+.++++..-. ...+++-.+|+.|+++.+ ++++.... .+..+  +.|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc--s~L~  263 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC--SRLD  263 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH-HHHHhccccceeeccccccccchhHHHHHHHhh--hhHh
Confidence            555555555444211 123344555555555555554433 334444455555555543 22221111 12223  3455


Q ss_pred             EEEccCCCCccccCC-CccccCCCccEEEccCCCC--Cc-cCcccccCCCccCEEeccCC-cCCCCChhhhhCCCCCCEE
Q psy3330         201 YLYLNENLIETVLDN-SFPFTLTNLHTLALSSNII--SF-INESSFVTLRTLHSLDLSNN-NLSAIPTKQLSKLSALVNL  275 (608)
Q Consensus       201 ~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l--~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~l~~L~~L  275 (608)
                      .|+++.+.+....-. ....--.+|+.|++++..-  .. -...--..+++|..|||++| .++.-....|.+++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            555555544321111 1111123455666665431  10 00111245778888888876 3444334567778888888


Q ss_pred             eccCCCCCccChhh---hCCCCCCceeeccC
Q psy3330         276 DLSGNNFSNIDSVA---FKSLFSLKLVKINL  303 (608)
Q Consensus       276 ~Ls~N~l~~~~~~~---f~~l~~L~~L~l~~  303 (608)
                      .++.+.  +++|..   +...++|.+|+..+
T Consensus       344 SlsRCY--~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  344 SLSRCY--DIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             ehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence            887765  455544   46677888888754

>KOG2982|consensus

Probab=97.97  E-value=8e-06  Score=77.08  Aligned_cols=210  Identities=21%  Similarity=0.195  Sum_probs=135.2

Q ss_pred             ccccEEEccCCCCCCCChh-hhc-CCCcCcEeeccCCcCCccCh--hhhCCCCCCcEEEccCCCCCccCchhhh-cCCCC
Q psy3330          98 NKLLNLNISYNEISALSKD-TFK-GLKELKTLDLSYNKISVINK--TAFRDTLHLELLILSFNNITYFEDSEIF-SSLKS  172 (608)
Q Consensus        98 ~~L~~L~Ls~n~i~~~~~~-~~~-~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~  172 (608)
                      ..++.|-+.++.|...... .|+ ..+.++.+||.+|.|+....  ..+.++|.|++|+++.|.+....  +.. ..+.+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~n  122 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKN  122 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccc
Confidence            3555666666666654432 233 35779999999999987543  45678999999999999987754  223 46789


Q ss_pred             ccEEEccCCCCCCCCc-ccccCCCCCCceEEEccCCCCccc--cCCCccccCCCccEEEccCCCCCccCc--ccccCCCc
Q psy3330         173 LRILKLDNNQILDVPN-NVLSNLPHQSLHYLYLNENLIETV--LDNSFPFTLTNLHTLALSSNIISFINE--SSFVTLRT  247 (608)
Q Consensus       173 L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~  247 (608)
                      |++|-|.+..+.--.. ..+..+  +.++.|.++.|.+..+  ........-+.++++.+-.|.......  .--.-.++
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~l--P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDL--PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcc--hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            9999998887652221 223345  4478888888854322  122222212355566655554321000  00012467


Q ss_pred             cCEEeccCCcCCCCCh-hhhhCCCCCCEEeccCCCCCccCh-hhhCCCCCCceeeccCCCCCCCCC
Q psy3330         248 LHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDS-VAFKSLFSLKLVKINLIPNLDSID  311 (608)
Q Consensus       248 L~~L~Ls~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~f~~l~~L~~L~l~~~~~l~~~~  311 (608)
                      +..+-+..|.+++... ..+..+|.+..|+|+.|+|..... +++.++++|..|.+..+|-++...
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            7888888888876432 356677888899999999887544 457888999999998777665543

>KOG4579|consensus

Probab=97.97  E-value=8.5e-07  Score=73.93  Aligned_cols=112  Identities=13%  Similarity=0.173  Sum_probs=87.0

Q ss_pred             eecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEE
Q psy3330         340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS  419 (608)
Q Consensus       340 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~  419 (608)
                      .+...++++|.+...++..-...+.++++++.. +.+..++.. |..++.|+.|+++.|. +...|.- +..+.++.+||
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~N~-l~~~p~v-i~~L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRFNP-LNAEPRV-IAPLIKLDMLD  129 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhcccccCc-cccchHH-HHHHHhHHHhc
Confidence            456789999999999887766777888888877 778777766 8888889999998887 6666665 44488888888


Q ss_pred             cCCCcccccCCCCCCCCCCCEEEccCCccccccCCh
Q psy3330         420 LKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLL  455 (608)
Q Consensus       420 L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~  455 (608)
                      ..+|.+..||..++--+..-..+++++||...|+.+
T Consensus       130 s~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  130 SPENARAEIDVDLFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             CCCCccccCcHHHhccccHHHHHhcCCcccccCccc
Confidence            888888888887664334445667889999888753

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=0.00027  Score=71.73  Aligned_cols=32  Identities=19%  Similarity=0.085  Sum_probs=17.4

Q ss_pred             cCCCccEEEeeCCCCcccCcccccccccccEEEccC
Q psy3330          72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY  107 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~  107 (608)
                      .+.+++.|++++|.++.+|.    -..+|++|.+++
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsn   81 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV----LPNELTEITIEN   81 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC----CCCCCcEEEccC
Confidence            35556666666666655541    123466666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00027  Score=71.80  Aligned_cols=137  Identities=20%  Similarity=0.264  Sum_probs=78.1

Q ss_pred             ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC-cCCccChhhhCCCCCCcEEEccCC-CCCccCchhhhcCCCCc
Q psy3330          96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN-KISVINKTAFRDTLHLELLILSFN-NITYFEDSEIFSSLKSL  173 (608)
Q Consensus        96 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L  173 (608)
                      .+.+++.|++++|.++.+|  .+  ..+|++|.++++ .++.+ +..+  ..+|++|++++| .+..++        .+|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~sLP--------~sL  114 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTL-PGSI--PEGLEKLTVCHCPEISGLP--------ESV  114 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccC-Cchh--hhhhhheEccCcccccccc--------ccc
Confidence            4577778888887777775  12  235888888763 34443 2333  246788888777 444432        346


Q ss_pred             cEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc-cc-cCCCccccCCCccEEEccCCCCCccCcccccCCCccCEE
Q psy3330         174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE-TV-LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL  251 (608)
Q Consensus       174 ~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~-~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  251 (608)
                      +.|++..+....+     ..+| .+|+.|.+.++... .. .+..+   .++|+.|.+++|..... |..+  ..+|+.|
T Consensus       115 e~L~L~~n~~~~L-----~~LP-ssLk~L~I~~~n~~~~~~lp~~L---PsSLk~L~Is~c~~i~L-P~~L--P~SLk~L  182 (426)
T PRK15386        115 RSLEIKGSATDSI-----KNVP-NGLTSLSINSYNPENQARIDNLI---SPSLKTLSLTGCSNIIL-PEKL--PESLQSI  182 (426)
T ss_pred             ceEEeCCCCCccc-----ccCc-chHhheecccccccccccccccc---CCcccEEEecCCCcccC-cccc--cccCcEE
Confidence            6677766554332     2344 56777777543211 11 01112   25788888887775533 2223  3578888


Q ss_pred             eccCCcCC
Q psy3330         252 DLSNNNLS  259 (608)
Q Consensus       252 ~Ls~n~l~  259 (608)
                      +++.+...
T Consensus       183 ~ls~n~~~  190 (426)
T PRK15386        183 TLHIEQKT  190 (426)
T ss_pred             Eecccccc
Confidence            88776433

>KOG2120|consensus

Probab=97.66  E-value=1.4e-06  Score=81.99  Aligned_cols=86  Identities=21%  Similarity=0.115  Sum_probs=43.1

Q ss_pred             CceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCC-cCCCCC-hhhhhCCCCCCEE
Q psy3330         198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN-NLSAIP-TKQLSKLSALVNL  275 (608)
Q Consensus       198 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~-~~~~~~l~~L~~L  275 (608)
                      .+++|||++..|+.-.-..+-..+++|+.|.+.++++..-....++.-.+|+.|+|+.+ .+++-. .-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            35666666555543211111112556666666666665544445555556666666653 233211 1134556666666


Q ss_pred             eccCCCCC
Q psy3330         276 DLSGNNFS  283 (608)
Q Consensus       276 ~Ls~N~l~  283 (608)
                      +|+++.+.
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            66665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.54  E-value=7.8e-05  Score=69.66  Aligned_cols=200  Identities=22%  Similarity=0.169  Sum_probs=97.9

Q ss_pred             cccCCCccEEEeeCCCCcccCcc----cccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCC
Q psy3330          70 LSFYIELRSLDLSVNKINVLGSH----NFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDT  145 (608)
Q Consensus        70 ~~~~~~L~~L~Ls~n~l~~i~~~----~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  145 (608)
                      +..+..++.++||+|.|.+-...    .+++-.+|+..++++--....-.....   +|+           ....++-++
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~---~L~-----------~Ll~aLlkc   91 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYS---NLV-----------MLLKALLKC   91 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHH---HHH-----------HHHHHHhcC
Confidence            34466777888888877653322    334455666666664322111100000   000           001233445


Q ss_pred             CCCcEEEccCCCCCccCc---hhhhcCCCCccEEEccCCCCCCCCccccc-------------CCCCCCceEEEccCCCC
Q psy3330         146 LHLELLILSFNNITYFED---SEIFSSLKSLRILKLDNNQILDVPNNVLS-------------NLPHQSLHYLYLNENLI  209 (608)
Q Consensus       146 ~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------------~l~~~~L~~L~L~~n~l  209 (608)
                      ++|+..+|+.|.+..-.+   .+.+++-..|.+|.+++|++..+...-++             .-  +.|+......|++
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k--p~Le~vicgrNRl  169 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK--PKLEVVICGRNRL  169 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC--CCceEEEeccchh
Confidence            555555555555433220   12344455566666666655443322111             11  4477777777777


Q ss_pred             ccccCC----CccccCCCccEEEccCCCCCcc--Ccc---cccCCCccCEEeccCCcCCCCC----hhhhhCCCCCCEEe
Q psy3330         210 ETVLDN----SFPFTLTNLHTLALSSNIISFI--NES---SFVTLRTLHSLDLSNNNLSAIP----TKQLSKLSALVNLD  276 (608)
Q Consensus       210 ~~~~~~----~~~~~l~~L~~L~L~~n~l~~~--~~~---~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~l~~L~~L~  276 (608)
                      ..-...    .+.. -..|+.+.+..|.|..-  ..-   .+..+.+|+.|||.+|-++..-    ..++..-+.|+.|.
T Consensus       170 engs~~~~a~~l~s-h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         170 ENGSKELSAALLES-HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             ccCcHHHHHHHHHh-hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            543321    1222 23577777777766521  111   1123456777777777665422    12334445566777


Q ss_pred             ccCCCCCccC
Q psy3330         277 LSGNNFSNID  286 (608)
Q Consensus       277 Ls~N~l~~~~  286 (608)
                      +.+|-++.-.
T Consensus       249 lnDClls~~G  258 (388)
T COG5238         249 LNDCLLSNEG  258 (388)
T ss_pred             ccchhhcccc
Confidence            7766665443

>KOG3665|consensus

Probab=97.39  E-value=0.00012  Score=80.59  Aligned_cols=108  Identities=20%  Similarity=0.227  Sum_probs=57.5

Q ss_pred             CCccEEEeeCCCCc-c-cCcccccccccccEEEccCCCCCCCC-hhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330          74 IELRSLDLSVNKIN-V-LGSHNFEYQNKLLNLNISYNEISALS-KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL  150 (608)
Q Consensus        74 ~~L~~L~Ls~n~l~-~-i~~~~f~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  150 (608)
                      .+|++||+++...- . -+...-.-+|.|++|.+++-.+..-. ...+.++++|..||+|+.+++.+  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            45666666664321 1 11112233666666666654433211 12345566666777776666655  44566666666


Q ss_pred             EEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330         151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQI  183 (608)
Q Consensus       151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  183 (608)
                      |.+.+=.+....+-..+.+|++|++||+|....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            666665555432233455666666666665543

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=97.38  E-value=0.00019  Score=44.93  Aligned_cols=32  Identities=34%  Similarity=0.904  Sum_probs=28.1

Q ss_pred             CCCCCceecCCceEEEecCCCCccccCccCcccc
Q psy3330          21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQ   54 (608)
Q Consensus        21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~   54 (608)
                      .||..|.|.  ...|+|++.+++++|.++|.+.+
T Consensus         1 ~CP~~C~C~--~~~V~C~~~~L~~vP~~iP~~t~   32 (33)
T smart00013        1 ACPAPCNCS--GTAVDCSGRGLTEVPLDLPPDTT   32 (33)
T ss_pred             CcCCCCEEC--CCEeEeCCCCcCccCCCCCcccc
Confidence            499999997  46899999999999999987654

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.30  E-value=0.00016  Score=43.15  Aligned_cols=28  Identities=39%  Similarity=0.917  Sum_probs=22.3

Q ss_pred             CCCCCceecCCceEEEecCCCCccccCccC
Q psy3330          21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLN   50 (608)
Q Consensus        21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~   50 (608)
                      .||..|.|.  ...|+|++.+++++|.++|
T Consensus         1 ~CP~~C~C~--~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCS--GLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEE--TTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEec--CCEeECCCCCCCccCCCCc
Confidence            599999998  4689999999999998775

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>KOG3665|consensus

Probab=97.29  E-value=0.00023  Score=78.34  Aligned_cols=132  Identities=20%  Similarity=0.159  Sum_probs=93.7

Q ss_pred             ccccEEEeccCCCc--cccccc-ccCCCccEEEeeCCCCcccC-cccccccccccEEEccCCCCCCCChhhhcCCCcCcE
Q psy3330          51 PEVQTIILRENRIS--NVHYTL-SFYIELRSLDLSVNKINVLG-SHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT  126 (608)
Q Consensus        51 ~~l~~L~L~~n~i~--~l~~~~-~~~~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  126 (608)
                      .+++.|++++...-  .-+..+ ..+|.|++|.+++-.+..-. .....++++|..||+|+.+++.+  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            57889999886543  233333 46899999999987664322 23456899999999999999988  45889999999


Q ss_pred             eeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCc-----hhhhcCCCCccEEEccCCCCC
Q psy3330         127 LDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFED-----SEIFSSLKSLRILKLDNNQIL  184 (608)
Q Consensus       127 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~  184 (608)
                      |.+.+=.+..-. -..+-+|++|+.||+|.........     -+.-..+++||.||.+++.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            998886666422 2456689999999999876544320     011234778888888876554

>KOG2739|consensus

Probab=97.19  E-value=0.00015  Score=67.81  Aligned_cols=107  Identities=29%  Similarity=0.326  Sum_probs=62.9

Q ss_pred             cCCCccEEEeeCCCCcccCcccccccccccEEEccCC--CCC-CCChhhhcCCCcCcEeeccCCcCCccCh-hhhCCCCC
Q psy3330          72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN--EIS-ALSKDTFKGLKELKTLDLSYNKISVINK-TAFRDTLH  147 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~  147 (608)
                      .+..|+.|++.+..++++.  .|-.+++|+.|.++.|  ++. +++. ....+++|++|++++|+|..+.. .....+.+
T Consensus        41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceeecc--cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            3445566666666665543  3556778888888887  443 2222 23345778888888887764322 33455666


Q ss_pred             CcEEEccCCCCCccCc--hhhhcCCCCccEEEccCC
Q psy3330         148 LELLILSFNNITYFED--SEIFSSLKSLRILKLDNN  181 (608)
Q Consensus       148 L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n  181 (608)
                      |..|++.+|.......  ...|.-+++|++|+-...
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            7777777776555432  234556666666654443

>KOG2123|consensus

Probab=97.19  E-value=3e-05  Score=72.64  Aligned_cols=101  Identities=22%  Similarity=0.212  Sum_probs=73.6

Q ss_pred             CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccCh-hhhCCCCCCcEE
Q psy3330          73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK-TAFRDTLHLELL  151 (608)
Q Consensus        73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L  151 (608)
                      +.+.+.|+.-++.+.+|..  ...++.|++|.||-|.|+.+.+  |..+++|++|+|..|.|..+.. ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            5566778888888887753  4577888888888888888864  7788888888888888887755 456788888888


Q ss_pred             EccCCCCCccCch----hhhcCCCCccEEE
Q psy3330         152 ILSFNNITYFEDS----EIFSSLKSLRILK  177 (608)
Q Consensus       152 ~L~~n~l~~~~~~----~~~~~l~~L~~L~  177 (608)
                      -|..|.-.+-..+    ..+.-|++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888876554311    2345566776664

>KOG2123|consensus

Probab=96.68  E-value=9.9e-05  Score=69.25  Aligned_cols=84  Identities=30%  Similarity=0.325  Sum_probs=70.8

Q ss_pred             cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330          97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL  176 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  176 (608)
                      +.+.+.|+..++.+..|.  ....++.|+.|.||-|+|+.+.  .|..+++|++|+|..|.|..+..-..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            557788999999999885  4678999999999999999884  477899999999999999988655667889999999


Q ss_pred             EccCCCCC
Q psy3330         177 KLDNNQIL  184 (608)
Q Consensus       177 ~L~~n~l~  184 (608)
                      -|..|.-.
T Consensus        94 WL~ENPCc  101 (388)
T KOG2123|consen   94 WLDENPCC  101 (388)
T ss_pred             hhccCCcc
Confidence            98887644

>KOG4341|consensus

Probab=96.58  E-value=7.9e-05  Score=73.84  Aligned_cols=60  Identities=18%  Similarity=0.180  Sum_probs=28.1

Q ss_pred             CCCccCEEeccCCc-CCCCChhhh-hCCCCCCEEeccCCCCCccCh--hhhCCCCCCceeeccC
Q psy3330         244 TLRTLHSLDLSNNN-LSAIPTKQL-SKLSALVNLDLSGNNFSNIDS--VAFKSLFSLKLVKINL  303 (608)
Q Consensus       244 ~l~~L~~L~Ls~n~-l~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~~--~~f~~l~~L~~L~l~~  303 (608)
                      +..+|+.|-++.++ ++..-...+ .+++.|+.+++.+........  ..-.+++.|+.+.+++
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslsh  381 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSH  381 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhh
Confidence            44566666666554 232221112 345566666666654332110  1113456666666643

>KOG4341|consensus

Probab=96.13  E-value=0.00029  Score=69.95  Aligned_cols=59  Identities=19%  Similarity=0.146  Sum_probs=34.1

Q ss_pred             cCCCccCEEeccCCc-CCCCChh-hhhCCCCCCEEeccCCC-CCccChhhh-CCCCCCceeec
Q psy3330         243 VTLRTLHSLDLSNNN-LSAIPTK-QLSKLSALVNLDLSGNN-FSNIDSVAF-KSLFSLKLVKI  301 (608)
Q Consensus       243 ~~l~~L~~L~Ls~n~-l~~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~f-~~l~~L~~L~l  301 (608)
                      .++..|+.|+.+++. ++..+-. .-.++++|+.|.++.++ ++......+ .+++.|+.+++
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~  353 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL  353 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence            356778888887753 3332222 23457889999998876 333322222 34556666555

>KOG2739|consensus

Probab=96.02  E-value=0.0041  Score=58.43  Aligned_cols=86  Identities=27%  Similarity=0.247  Sum_probs=48.3

Q ss_pred             cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc--CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330          97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK--ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR  174 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  174 (608)
                      +..|+.|.+.+..++.+.  .|..+++|+.|.++.|.  +..--.-....+++|+++++++|++..+..-.....+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            445566666666655553  36667777777777773  32111112233477777777777766543223345555666


Q ss_pred             EEEccCCCCC
Q psy3330         175 ILKLDNNQIL  184 (608)
Q Consensus       175 ~L~L~~n~l~  184 (608)
                      .|++.+|..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            6666665443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.65  E-value=0.007  Score=33.83  Aligned_cols=18  Identities=39%  Similarity=0.661  Sum_probs=11.2

Q ss_pred             CCCEEEcCCCcccccCCC
Q psy3330         414 NLKSVSLKGNSLSHLEAS  431 (608)
Q Consensus       414 ~L~~L~L~~N~l~~l~~~  431 (608)
                      +|++|||++|+|+.||++
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            356666666666666655

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.40  E-value=0.009  Score=30.97  Aligned_cols=17  Identities=35%  Similarity=0.614  Sum_probs=8.6

Q ss_pred             CCCCEEEcCCCcccccC
Q psy3330         413 TNLKSVSLKGNSLSHLE  429 (608)
Q Consensus       413 ~~L~~L~L~~N~l~~l~  429 (608)
                      ++|+.|+|++|+|+++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35677777777766654

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.37  E-value=0.0078  Score=33.65  Aligned_cols=16  Identities=44%  Similarity=0.509  Sum_probs=7.7

Q ss_pred             ccEEEeeCCCCcccCc
Q psy3330          76 LRSLDLSVNKINVLGS   91 (608)
Q Consensus        76 L~~L~Ls~n~l~~i~~   91 (608)
                      |++|||++|+++.+|+
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4445555554444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.97  E-value=0.0072  Score=35.00  Aligned_cols=24  Identities=29%  Similarity=0.942  Sum_probs=18.2

Q ss_pred             cccCCCCcccCCcccccCCCccccC
Q psy3330         512 LKCSSPPDIKGLEVKAVPENSVHCE  536 (608)
Q Consensus       512 ~~C~~p~~~~g~~~~~~~~~~~~C~  536 (608)
                      .+|++|+.++| ++.++..+++.|.
T Consensus         2 ~~Ca~P~~lrg-~l~~~~~~~f~C~   25 (25)
T PF01463_consen    2 ARCASPPELRG-PLLDLPPSDFKCS   25 (25)
T ss_dssp             -BEEESGGGTT-BGGGSSGGG----
T ss_pred             CccCCChHHcC-cHhhCCcccCcCC
Confidence            47999999999 9999999888884

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.86  E-value=0.018  Score=33.73  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=16.7

Q ss_pred             CCCCCEEEcCCCcccccCCCCCC
Q psy3330         412 NTNLKSVSLKGNSLSHLEASHFP  434 (608)
Q Consensus       412 l~~L~~L~L~~N~l~~l~~~~~~  434 (608)
                      +++|+.|+|++|+|+.||++.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677888888888888776653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.86  E-value=0.018  Score=33.73  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=16.7

Q ss_pred             CCCCCEEEcCCCcccccCCCCCC
Q psy3330         412 NTNLKSVSLKGNSLSHLEASHFP  434 (608)
Q Consensus       412 l~~L~~L~L~~N~l~~l~~~~~~  434 (608)
                      +++|+.|+|++|+|+.||++.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677888888888888776653

>KOG1947|consensus

Probab=94.34  E-value=0.012  Score=63.29  Aligned_cols=112  Identities=27%  Similarity=0.096  Sum_probs=60.6

Q ss_pred             cCCCccEEEeeCC-CCcccC-cccccccccccEEEccCC--CCCCCC---hhhhcCCCcCcEeeccCCc-CCccChhhhC
Q psy3330          72 FYIELRSLDLSVN-KINVLG-SHNFEYQNKLLNLNISYN--EISALS---KDTFKGLKELKTLDLSYNK-ISVINKTAFR  143 (608)
Q Consensus        72 ~~~~L~~L~Ls~n-~l~~i~-~~~f~~l~~L~~L~Ls~n--~i~~~~---~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~  143 (608)
                      .++.|+.|.+..+ .+.... ......+++|+.|+++++  .+...+   ......+++|+.|+++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            3567777777665 343311 123445677777777752  111111   1123445677777777766 4444333333


Q ss_pred             -CCCCCcEEEccCCC-CCccCchhhhcCCCCccEEEccCCCC
Q psy3330         144 -DTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILKLDNNQI  183 (608)
Q Consensus       144 -~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l  183 (608)
                       .+++|+.|.+.++. ++..........++.|++|+++.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             26677777766665 44433234445566777777776543

>KOG1947|consensus

Probab=93.85  E-value=0.019  Score=61.65  Aligned_cols=233  Identities=21%  Similarity=0.111  Sum_probs=125.5

Q ss_pred             ccccEEEeccC-CCcc--cccccccCCCccEEEeeCC--CCcccC---cccccccccccEEEccCCC-CCCCChhhhcC-
Q psy3330          51 PEVQTIILREN-RISN--VHYTLSFYIELRSLDLSVN--KINVLG---SHNFEYQNKLLNLNISYNE-ISALSKDTFKG-  120 (608)
Q Consensus        51 ~~l~~L~L~~n-~i~~--l~~~~~~~~~L~~L~Ls~n--~l~~i~---~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~-  120 (608)
                      +.++.|.+... .+..  +......+++|+.|+++++  .+...+   ......+++|+.|+++.+. ++...-.++.. 
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            56777777765 3443  4455678999999999873  222111   1244567899999999887 66655444443 


Q ss_pred             CCcCcEeeccCCc-CCccCh-hhhCCCCCCcEEEccCCCCCcc-CchhhhcCCCCccEEEccCCCCCCCCcccccCCCCC
Q psy3330         121 LKELKTLDLSYNK-ISVINK-TAFRDTLHLELLILSFNNITYF-EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ  197 (608)
Q Consensus       121 l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~  197 (608)
                      +++|++|.+.++. ++...- .....+++|+.|+++++..... .......++++|+.|.+....-          .  .
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c--~  335 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C--P  335 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C--c
Confidence            7899999988776 554322 2335678899999998765321 1123345577777655433221          1  1


Q ss_pred             CceEEEccCCCCc---cccCCCccccCCCccEEEccCCCCCccC-cccccCCCccCEEeccCCcCCCCChhhhhCCCCCC
Q psy3330         198 SLHYLYLNENLIE---TVLDNSFPFTLTNLHTLALSSNIISFIN-ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALV  273 (608)
Q Consensus       198 ~L~~L~L~~n~l~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~  273 (608)
                      .++.+.+.+....   ......... +++++.+.+..+...... ...+.+++.|. ..+..         .......++
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~~~l~  404 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRS-CPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRSDSLR  404 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhc-CCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccCCccc
Confidence            2333333321110   111122222 677777777776643332 23344555442 11111         111122267


Q ss_pred             EEeccCCCCCccChh-hhCC-CCCCceeeccCCCC
Q psy3330         274 NLDLSGNNFSNIDSV-AFKS-LFSLKLVKINLIPN  306 (608)
Q Consensus       274 ~L~Ls~N~l~~~~~~-~f~~-l~~L~~L~l~~~~~  306 (608)
                      .|+++.......... .... +..++.+.+.+++.
T Consensus       405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             eEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            777777664433221 1111 45566666654443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.82  E-value=0.056  Score=31.55  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=11.0

Q ss_pred             ccccEEEccCCCCCCCChhhh
Q psy3330          98 NKLLNLNISYNEISALSKDTF  118 (608)
Q Consensus        98 ~~L~~L~Ls~n~i~~~~~~~~  118 (608)
                      ++|++|+|++|+|+.+++++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.82  E-value=0.056  Score=31.55  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=11.0

Q ss_pred             ccccEEEccCCCCCCCChhhh
Q psy3330          98 NKLLNLNISYNEISALSKDTF  118 (608)
Q Consensus        98 ~~L~~L~Ls~n~i~~~~~~~~  118 (608)
                      ++|++|+|++|+|+.+++++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.04  E-value=0.064  Score=27.77  Aligned_cols=12  Identities=58%  Similarity=0.908  Sum_probs=3.6

Q ss_pred             ccEEEeeCCCCc
Q psy3330          76 LRSLDLSVNKIN   87 (608)
Q Consensus        76 L~~L~Ls~n~l~   87 (608)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            334444444333

...

>KOG3864|consensus

Probab=92.50  E-value=0.023  Score=51.38  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=27.4

Q ss_pred             CceecEEecCCCCCCCcChhhhcccccccccccccCCCC
Q psy3330         338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL  376 (608)
Q Consensus       338 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l  376 (608)
                      ...++.+|-++..|..+.-+-+.++++++.+.+..|..+
T Consensus       100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~  138 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF  138 (221)
T ss_pred             cceEEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence            345688888888888777777777777777766655443

>KOG0473|consensus

Probab=92.42  E-value=0.0042  Score=57.09  Aligned_cols=82  Identities=26%  Similarity=0.267  Sum_probs=34.8

Q ss_pred             CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330          73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI  152 (608)
Q Consensus        73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  152 (608)
                      ..+.+.||++.|++..+.. .|+.+..|..|+++.|.|..++. .++.+..++.+++..|..+.. |.+++..+++++++
T Consensus        41 ~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhC-CccccccCCcchhh
Confidence            3334444444444433332 23334444444444444444432 234444444444444444433 23444444444444


Q ss_pred             ccCCC
Q psy3330         153 LSFNN  157 (608)
Q Consensus       153 L~~n~  157 (608)
                      +-+|.
T Consensus       118 ~k~~~  122 (326)
T KOG0473|consen  118 QKKTE  122 (326)
T ss_pred             hccCc
Confidence            44443

>KOG0473|consensus

Probab=90.91  E-value=0.005  Score=56.58  Aligned_cols=93  Identities=17%  Similarity=0.141  Sum_probs=59.1

Q ss_pred             CcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchh
Q psy3330          86 INVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE  165 (608)
Q Consensus        86 l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  165 (608)
                      ++.||...+......+.||++.|++..+.. -|.-++.|..|+++.|.+..+ |..++....+..+++..|..+..  |.
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~--p~  105 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQ--PK  105 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhC--Cc
Confidence            445555555666677777777777666553 356666777777777776655 34555556666666666666655  45


Q ss_pred             hhcCCCCccEEEccCCC
Q psy3330         166 IFSSLKSLRILKLDNNQ  182 (608)
Q Consensus       166 ~~~~l~~L~~L~L~~n~  182 (608)
                      .++..+.++.+++..|.
T Consensus       106 s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             cccccCCcchhhhccCc
Confidence            66666666666665554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.13  E-value=0.31  Score=28.24  Aligned_cols=18  Identities=28%  Similarity=0.486  Sum_probs=15.0

Q ss_pred             CCCCEEEcCCCcccccCC
Q psy3330         413 TNLKSVSLKGNSLSHLEA  430 (608)
Q Consensus       413 ~~L~~L~L~~N~l~~l~~  430 (608)
                      ++|+.|++++|+|+++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            468888999999988886

>KOG4308|consensus

Probab=87.03  E-value=0.012  Score=62.33  Aligned_cols=39  Identities=33%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             CccCEEeccCCcCCCCC----hhhhhCCCCCCEEeccCCCCCc
Q psy3330         246 RTLHSLDLSNNNLSAIP----TKQLSKLSALVNLDLSGNNFSN  284 (608)
Q Consensus       246 ~~L~~L~Ls~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~  284 (608)
                      ..+++++++.|.++.--    ...+..++.++.+.++.|.+..
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            44556666666655421    1234445566666666665543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.22  E-value=0.72  Score=26.88  Aligned_cols=18  Identities=33%  Similarity=0.518  Sum_probs=13.6

Q ss_pred             CCCCCEEEcCCCcccccC
Q psy3330         412 NTNLKSVSLKGNSLSHLE  429 (608)
Q Consensus       412 l~~L~~L~L~~N~l~~l~  429 (608)
                      +.+|+.|+|++|+|+.|.
T Consensus         1 L~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        1 LTNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CCccCEEECCCCccceec
Confidence            357888888888887664

>KOG3864|consensus

Probab=82.47  E-value=0.27  Score=44.70  Aligned_cols=81  Identities=25%  Similarity=0.143  Sum_probs=39.5

Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCC-ccChhhhC-CCCCCcEEEccCC-CCCccCchhhhcCCCCccE
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS-VINKTAFR-DTLHLELLILSFN-NITYFEDSEIFSSLKSLRI  175 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~  175 (608)
                      .++.+|-++..|....-.-+.+++.++.|.+.+++-- ...-.-++ -.++|+.|++++| +|++.. -..+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHH
Confidence            3455555555555444444555555555555554311 00001111 2356777777765 344443 445556666666


Q ss_pred             EEccC
Q psy3330         176 LKLDN  180 (608)
Q Consensus       176 L~L~~  180 (608)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            65543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	608
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		3e-15
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		5e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		8e-15
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-13
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		4e-13
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		4e-13
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-09
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-09
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-09
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-09
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		3e-09
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-08
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-08
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-08
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		5e-08
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		6e-08
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		8e-08
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		8e-08
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		9e-08
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-07
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-07
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		5e-07
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		6e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		1e-06
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		1e-06
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-06
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		4e-06
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-06
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		1e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-05
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		2e-05
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-05
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		2e-05
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		4e-05
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		8e-05
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		2e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		2e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		2e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		2e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		2e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		2e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		2e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		2e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		2e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		3e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		3e-04
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		5e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		6e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		6e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		7e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		7e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		8e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		8e-04

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CP+ C C D  +   C++ GL+V+P  +  +V  + L  N+ + V   LS Y  L  +DL
Sbjct: 4   CPTECTCLDTVVR--CSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61
Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
           S N+I+ L + +F    +LL L +SYN +  +   TF GLK L+ L L  N ISV+ + A
Sbjct: 62  SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 142 FRDTLHLELLILSFN 156
           F D   L  L +  N
Sbjct: 122 FNDLSALSHLAIGAN 136

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 376 LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-P 434
           + ++  ++F +  QL T+I++ N  L+ +P + F G  +L+ +SL GN +S +    F  
Sbjct: 66  ISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124
Query: 435 LERISFLDLSDNPLHCDCN 453
           L  +S L +  NPL+CDCN
Sbjct: 125 LSALSHLAIGANPLYCDCN 143

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 150/331 (45%), Gaps = 28/331 (8%)
Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           E + LDL  N+I  +N+  F    HLE L L+ N ++  E    F++L +LR L L +N+
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNR 91
Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXX 242
           +  +P  V + L   +L  L ++EN I  +LD  F   L NL +L +             
Sbjct: 92  LKLIPLGVFTGL--SNLTKLDISENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAF 148
Query: 243 VTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
             L +L           +IPT+ LS L  L+ L L   N + I   +FK L+ LK+++I+
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 303 LIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
             P LD++                     +LT L    C        N + +  +A + L
Sbjct: 209 HWPYLDTM-------------TPNCLYGLNLTSLSITHC--------NLTAVPYLAVRHL 247
Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             L+ + ++  P + +I+     + ++L+ + +     L  +    F+G   L+ +++ G
Sbjct: 248 VYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQL-VGGQLAVVEPYAFRGLNYLRVLNVSG 305
Query: 423 NSLSHLEASHF-PLERISFLDLSDNPLHCDC 452
           N L+ LE S F  +  +  L L  NPL CDC
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPLACDC 336

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
Query: 22  CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
           CP  C C+++ K+  SC   GL+ VP  +    Q I L  NRIS        Y+   S  
Sbjct: 1   CPGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRIS--------YVPAASFQ 52
Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN-KISVINK 139
            S   + +L  H+              N ++ +    F GL  L+ LDLS N ++ V++ 
Sbjct: 53  -SCRNLTILWLHS--------------NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
           T FR   HL  L L    +       +F  L +L+ L L +N +  +P+N   +L   +L
Sbjct: 98  TTFRGLGHLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNNLQALPDNTFRDL--GNL 154
Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTL 227
            +L+L+ N I +V +++F      LH+L
Sbjct: 155 THLFLHGNRIPSVPEHAF----RGLHSL 178

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 10/201 (4%)
Query: 22  CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
           CP  C C+++ K+  SC   GL+ VP+ +    Q I L  NRIS  H   + +   R+L 
Sbjct: 1   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRIS--HVPAASFRACRNLT 58
Query: 81  LSVNKINVLG---SHNFEYQNKLLNLNISYN-EISALSKDTFKGLKELKTLDLSYNKISV 136
           +     NVL    +  F     L  L++S N ++ ++   TF GL  L TL L    +  
Sbjct: 59  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 118
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH 196
           +    FR    L+ L L  N +    D + F  L +L  L L  N+I  VP      L  
Sbjct: 119 LGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGL-- 175
Query: 197 QSLHYLYLNENLIETVLDNSF 217
            SL  L L++N +  V  ++F
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAF 196

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 10/201 (4%)
Query: 22  CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
           CP  C C+++ K+  SC   GL+ VP+ +    Q I L  NRIS  H   + +   R+L 
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRIS--HVPAASFRACRNLT 59
Query: 81  LSVNKINVLG---SHNFEYQNKLLNLNISYN-EISALSKDTFKGLKELKTLDLSYNKISV 136
           +     NVL    +  F     L  L++S N ++ ++   TF GL  L TL L    +  
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH 196
           +    FR    L+ L L  N +    D + F  L +L  L L  N+I  VP      L  
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGL-- 176
Query: 197 QSLHYLYLNENLIETVLDNSF 217
            SL  L L++N +  V  ++F
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAF 197

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 27/206 (13%)
Query: 24  SRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSV 83
           + C C + K E  C    L+ VP  +  + +                        LDL  
Sbjct: 8   TGCTCNEGKKEVDCQGKSLDSVPSGIPADTE-----------------------KLDLQS 44
Query: 84  NKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFR 143
             +  L    F    KL  LN+ YN++  LS   F  L EL TL L+ N+++ +    F 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
               L+ L L  N +     S +F  L  L+ L+L+ NQ+  +P      L +  L  L 
Sbjct: 105 HLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN--LQTLS 161
Query: 204 LNENLIETVLDNSFPFTLTNLHTLAL 229
           L+ N +++V   +F   L  L T+ L
Sbjct: 162 LSTNQLQSVPHGAFD-RLGKLQTITL 186

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 27/206 (13%)
Query: 24  SRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSV 83
           + C C + K E  C    L+ VP  +  + +                        LDL  
Sbjct: 8   TGCTCNEGKKEVDCQGKSLDSVPSGIPADTE-----------------------KLDLQS 44
Query: 84  NKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFR 143
             +  L    F    KL  LN+ YN++  LS   F  L EL TL L+ N+++ +    F 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104
Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
               L+ L L  N +     S +F  L  L+ L+L+ NQ+  +P      L +  L  L 
Sbjct: 105 HLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN--LQTLS 161
Query: 204 LNENLIETVLDNSFPFTLTNLHTLAL 229
           L+ N +++V   +F   L  L T+ L
Sbjct: 162 LSTNQLQSVPHGAFD-RLGKLQTITL 186

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 129/330 (39%), Gaps = 101/330 (30%)
Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
           + L+L  N+I +I   +F+   HLE+L LS N+I   E    F+ L +L  L+L +N++ 
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDNRLT 125
Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVT 244
            +PN     L    L  L+L  N IE+                                 
Sbjct: 126 TIPNGAFVYL--SKLKELWLRNNPIES--------------------------------- 150
Query: 245 LRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSG-NNFSNIDSVAFKSLFSLKLVKINL 303
                           IP+   +++ +L  LDL      S I   AF+ L +L+ + + +
Sbjct: 151 ----------------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 304 IPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLF 363
             NL  I                     +LTPL  +K D LDLSGN+ S I   +F+ L 
Sbjct: 195 C-NLREIP--------------------NLTPL--IKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 364 SLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGN 423
            L+  K+ +I +   + +R   DN+Q    I   + NL  LP  LF              
Sbjct: 232 HLQ--KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF-------------T 276
Query: 424 SLSHLEASHFPLERISFLDLSDNPLHCDCN 453
            L HLE  H          L  NP +C+C+
Sbjct: 277 PLHHLERIH----------LHHNPWNCNCD 296

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 28/186 (15%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CPSRC C    +E  C   G   VP  +    QT  L                     DL
Sbjct: 1   CPSRCSCSGTTVE--CYSQGRTSVPTGI--PAQTTYL---------------------DL 35
Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             N +  L +  F+    L  L +  N++ +L    F  L  L  L+LS N++  +    
Sbjct: 36  ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
           F     L+ L L+ N +    D  +F  L  L+ L+L  NQ+  VP+ V   L   SL Y
Sbjct: 96  FDKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQY 152
Query: 202 LYLNEN 207
           ++L++N
Sbjct: 153 IWLHDN 158

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           +++ DLS +KI  L    F +   L  L ++ NEI+ +  + F GL  L  L+LS N + 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP 195
            I+   F +   LE+L LS+N+I    D + F  L +L+ L LD NQ+  VP+ +   L 
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDGIFDRL- 394
Query: 196 HQSLHYLYLNEN 207
             SL  ++L+ N
Sbjct: 395 -TSLQKIWLHTN 405

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 160/406 (39%), Gaps = 61/406 (15%)
Query: 79  LDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS-ALSKDTFKGLKELKTLDLSYNKISVI 137
           +DLS+N I  L   +F     L  L +        +  +TF+GL  L  L L YN+   +
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 138 NKTAFRDTLHLELLILSFNNI-TYFEDSEIFSSLKSLRILKLDNNQILDV-PNNVLSNLP 195
              AF    +LE+L L+  N+         F  L SL +L L +N I  + P +   N+ 
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM- 153
Query: 196 HQSLHYLYLNENLIETVLDNSF------PFTLTNLHTLALXXXXXXXXXXXXXVTLRTLH 249
            +  H L L  N ++++ +          FTL  L +                +TL+ ++
Sbjct: 154 -RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS----------------ITLQDMN 196
Query: 250 XXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 309
                       P K     +++  LDLSGN F   +S+A +   ++   KI  +   +S
Sbjct: 197 -EYWLGWEKCGNPFKN----TSITTLDLSGNGFK--ESMAKRFFDAIAGTKIQSLILSNS 249
Query: 310 IDQXXXXXXXXXXXXXXXXXAFSLTPLGTLKCD---------------------RLDLSG 348
            +                     L   G   CD                     +L L+ 
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFK-GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 349 NNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSK 407
           N  + ID  AF  L    L+K+NL  N L SID R F +  +LE + ++ N +++ L  +
Sbjct: 309 NEINKIDDNAFWGL--THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQ 365
Query: 408 LFQGNTNLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCDC 452
            F G  NLK ++L  N L  +    F  L  +  + L  NP  C C
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 81/269 (30%)
Query: 21  ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPE------------------------VQTI 56
           +CP RCQC  + ++  C+D GLE VP  L P+                        + T+
Sbjct: 24  VCPFRCQCHLRVVQ--CSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 57  ILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK 115
           IL  N+IS +     +  ++L  L LS N++  L     +    L  L +  NEI+ + K
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRVHENEITKVRK 138
Query: 116 DTFKGLKELKTLDLSYN--KISVINKTAFR-----------DT---------------LH 147
             F GL ++  ++L  N  K S I   AF+           DT               LH
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
Query: 148 LE-------------------LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN 188
           L+                    L LSFN+I+  ++  + ++   LR L L+NN+++ VP 
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKVPG 257
Query: 189 NVLSNLPHQSLHYLYLNENLIETVLDNSF 217
            +     H+ +  +YL+ N I  +  N F
Sbjct: 258 GLAD---HKYIQVVYLHNNNISAIGSNDF 283

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 81/269 (30%)
Query: 21  ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPE------------------------VQTI 56
           +CP RCQC  + ++  C+D GLE VP  L P+                        + T+
Sbjct: 24  VCPFRCQCHLRVVQ--CSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 57  ILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK 115
           IL  N+IS +     +  ++L  L LS N++  L     +    L  L +  NEI+ + K
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE---KMPKTLQELRVHENEITKVRK 138
Query: 116 DTFKGLKELKTLDLSYN--KISVINKTAFR-----------DT---------------LH 147
             F GL ++  ++L  N  K S I   AF+           DT               LH
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
Query: 148 LE-------------------LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN 188
           L+                    L LSFN+I+  ++  + ++   LR L L+NN+++ VP 
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKVPG 257
Query: 189 NVLSNLPHQSLHYLYLNENLIETVLDNSF 217
            +     H+ +  +YL+ N I  +  N F
Sbjct: 258 GLAD---HKYIQVVYLHNNNISAIGSNDF 283

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 131/347 (37%), Gaps = 111/347 (31%)
Query: 117 TFKGLKEL--------KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS 168
           T +GL E+        + L+L  N I +I    FR   HLE+L L  N+I   E    F+
Sbjct: 62  TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FN 120
Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
            L SL  L+L +N +  +P+     L    L  L+L  N IE+                 
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYL--SKLRELWLRNNPIES----------------- 161
Query: 229 LXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSG-NNFSNIDS 287
                                           IP+   +++ +L+ LDL        I  
Sbjct: 162 --------------------------------IPSYAFNRVPSLMRLDLGELKKLEYISE 189
Query: 288 VAFKSLFSLKLVKINLIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTPLGTLKCDRLDLS 347
            AF+ LF+LK + + +  N+  +                     +LTPL  L  + L++S
Sbjct: 190 GAFEGLFNLKYLNLGMC-NIKDMP--------------------NLTPLVGL--EELEMS 226
Query: 348 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSK 407
           GN+F  I   +F  L SLK               + +V N Q+  +  N           
Sbjct: 227 GNHFPEIRPGSFHGLSSLK---------------KLWVMNSQVSLIERNA---------- 261
Query: 408 LFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN 453
            F G  +L  ++L  N+LS L    F PL  +  L L  NP +CDC+
Sbjct: 262 -FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 31/218 (14%)
Query: 18  NKAICPSR---CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS---------- 64
           N+A+C      C C + K    C+   L  +P  +  + + + L+ N++S          
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL 60
Query: 65  ----------NVHYTL--SFYIELRSLD---LSVNKINVLGSHNFEYQNKLLNLNISYNE 109
                     N   TL    + EL++L+   ++ NK+  L    F+    L  L +  N+
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 110 ISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSS 169
           + +L    F  L +L  L L YN++  + K  F     L+ L L  N +    +   F  
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG-AFDK 179
Query: 170 LKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
           L  L+ LKLDNNQ+  VP     +L  + L  L L EN
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSL--EKLKMLQLQEN 215

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 112/278 (40%), Gaps = 58/278 (20%)
Query: 20  AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
           A+CP  C C  + ++  C+D GL+ VP +++P+                TL         
Sbjct: 25  AMCPFGCHCHLRVVQ--CSDLGLKAVPKEISPDT---------------TL--------- 58
Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
                                  L++  N+IS L KD FKGL+ L  L L  NKIS I++
Sbjct: 59  -----------------------LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
            AF     L+ L +S N++     + + SSL  LRI    +N+I  VP  V S L  +++
Sbjct: 96  KAFSPLRKLQKLYISKNHLVEIPPN-LPSSLVELRI---HDNRIRKVPKGVFSGL--RNM 149
Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXX 259
           + + +  N +E        F    L+ L +              TL  LH          
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQ 206
Query: 260 AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
           AI  + L + S L  L L  N    I++ +   L +L+
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 27/186 (14%)
Query: 20  AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
           A CPS+C C    ++  C       VP  +    Q + L +N+I+         +E    
Sbjct: 11  AACPSQCSCSGTTVD--CRSKRHASVPAGIPTNAQILYLHDNQITK--------LEPGVF 60
Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           D  +N               L  L +  N++ AL    F  L +L  LDL  N+++V+  
Sbjct: 61  DSLIN---------------LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
             F   +HL+ L +  N +T  E       L  L  L LD NQ+  +P+     L   + 
Sbjct: 106 AVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Query: 200 HYLYLN 205
            YL+ N
Sbjct: 164 AYLFGN 169

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CP+ C C +  ++  C   GL  +P  L PE  T                   E+R   L
Sbjct: 5   CPAACTCSNNIVD--CRGKGLTEIPTNL-PETIT-------------------EIR---L 39
Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             N I V+    F    KL  +++S N+IS L+ D F+GL+ L +L L  NKI+ + K+ 
Sbjct: 40  EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
           F     L+LL+L+ N I      + F  L +L +L L +N++  +     S  P +++  
Sbjct: 100 FEGLFSLQLLLLNANKINXLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFS--PLRAIQT 156
Query: 202 LYLNENLIETVLDNSFPFTLTNLHT 226
           ++L +N    + D    +    LHT
Sbjct: 157 MHLAQNPF--ICDCHLKWLADYLHT 179

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 44  VVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL 103
           V  IQ  P V+ + L  N++ ++   L     L  L L+ N++  L +  F+    L  L
Sbjct: 56  VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFED 163
            +  N++ +L    F  L  L  L+L++N++  + K  F    +L  L LS+N +    +
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 164 SEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
             +F  L  L+ L+L  NQ+  VP+ V   L   SL Y++L++N
Sbjct: 175 G-VFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQYIWLHDN 215

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CP+ C C +  ++  C   GL  +P  L PE  T                   E+R   L
Sbjct: 5   CPAACTCSNNIVD--CRGKGLTEIPTNL-PETIT-------------------EIR---L 39
Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             N I V+    F    KL  +++S N+IS L+ D F+GL+ L +L L  NKI+ + K+ 
Sbjct: 40  EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
           F     L+LL+L+ N I      + F  L +L +L L +N++  +     S  P +++  
Sbjct: 100 FEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFS--PLRAIQT 156
Query: 202 LYLNENLIETVLDNSFPFTLTNLHT 226
           ++L +N    + D    +    LHT
Sbjct: 157 MHLAQNPF--ICDCHLKWLADYLHT 179

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 109/274 (39%), Gaps = 33/274 (12%)
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXX 241
           ++ +VP ++  N       YL L EN I+ +  ++F   L +L  L L            
Sbjct: 25  ELAEVPASIPVNT-----RYLNLQENSIQVIRTDTFKH-LRHLEILQLSKNLVRKIEVGA 78
Query: 242 XVTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
              L +L+           +PT+    LS L  L L  N   +I S AF  + SL+ + +
Sbjct: 79  FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 302 NLIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTP--LGTLKCDRLDLSGNNFSNIDSVAF 359
             +  L+ I +                      P     ++ + L+LSGN    I   +F
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
           + L SL+ + + +   + +I++ AF D   LE + ++ N NL  LP  LF          
Sbjct: 199 QGLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHN-NLMSLPHDLFT--------- 247
Query: 420 LKGNSLSHLEASHFPLERISFLDLSDNPLHCDCN 453
                         PL R+  + L+ NP HC+C+
Sbjct: 248 --------------PLHRLERVHLNHNPWHCNCD 267

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 109/274 (39%), Gaps = 33/274 (12%)
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXX 241
           ++ +VP ++  N       YL L EN I+ +  ++F   L +L  L L            
Sbjct: 25  ELAEVPASIPVNT-----RYLNLQENSIQVIRTDTFKH-LRHLEILQLSKNLVRKIEVGA 78
Query: 242 XVTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
              L +L+           +PT+    LS L  L L  N   +I S AF  + SL+ + +
Sbjct: 79  FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 302 NLIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTP--LGTLKCDRLDLSGNNFSNIDSVAF 359
             +  L+ I +                      P     ++ + L+LSGN    I   +F
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSF 198
Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
           + L SL+ + + +   + +I++ AF D   LE + ++ N NL  LP  LF          
Sbjct: 199 QGLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHN-NLMSLPHDLFT--------- 247
Query: 420 LKGNSLSHLEASHFPLERISFLDLSDNPLHCDCN 453
                         PL R+  + L+ NP HC+C+
Sbjct: 248 --------------PLHRLERVHLNHNPWHCNCD 267

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF--YIELRSL 79
           CP +C+C  +     C++  L  +P  +      + L  N  + +  T  F    +LR +
Sbjct: 5   CPEKCRC--EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKI 62
Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           + S NKI  +    FE  + +  + ++ N +  +    FKGL+ LKTL L  N+I+ +  
Sbjct: 63  NFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122
Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178
            +F     + LL L  N IT       F +L SL  L L
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNL 160

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF--YIELRSL 79
           CP+ C C  +     CT  GL+ +P  +      ++L +N +  +     F     L  L
Sbjct: 2   CPAMCHC--EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKL 59
Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           +L  N++  +  + FE  + +  L +  N+I  +S   F GL +LKTL+L  N+IS +  
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Query: 140 TAFR 143
            +F 
Sbjct: 120 GSFE 123

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 24/172 (13%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV-HYTLSFYIELRSLD 80
           CPSRC C     E  C   GL  VP  +      + L  N++ ++ H       +L  L 
Sbjct: 1   CPSRCSC--SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58
Query: 81  LSVNKINVLG--SHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
           LS N ++  G  S +      L  L++S+N +  +S + F GL++L+ LD  ++ +  ++
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 117
Query: 139 KTAFRDTLHLELLILSFNNITYFEDSE---------IFSSLKSLRILKLDNN 181
           + +         + LS  N+ Y + S          IF+ L SL +LK+  N
Sbjct: 118 EFS---------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 173/425 (40%), Gaps = 91/425 (21%)
Query: 73  YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL--S 130
           +  L  LDLS N ++ +G+ +F Y   L  L++ YN I  LS  +F GL  L+ L L  +
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRA 306
Query: 131 YNKISV-------INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN--N 181
           + K SV       I+  +F+   +LE L +  NNI     S  F+ L SL+ L L     
Sbjct: 307 FTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPS-TKSNTFTGLVSLKYLSLSKTFT 365
Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALXXXXXXXXXXXX 241
            +  + N    +L H  L  L L +N I  + + +F + L  L  L L            
Sbjct: 366 SLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW-LGQLRILDL------------ 412
Query: 242 XVTLRTLHXXXXXXXXXXAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
                              +  ++   L  +  + LS N +  + + +F  + SL+ + +
Sbjct: 413 -----------GLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLML 461
Query: 302 NLIPNLDSIDQXXXXXXXXXXXXXXXXXAFSLTPLGTLK-CDRLDLSGNNFSNIDSVAFK 360
             +  L ++D                    S +P   L+    LDLS NN +NI+    +
Sbjct: 462 RRVA-LKNVD-------------------ISPSPFRPLRNLTILDLSNNNIANINEDLLE 501
Query: 361 SLFSLKLVKINLIPNLDSIDQRA-------FVDNIQLETVIINENMNLKQLPSKLFQG-- 411
            L +L+++      NL  + +RA       F+  +    ++  E+  L ++P  +F+   
Sbjct: 502 GLENLEILDFQ-HNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLF 560
Query: 412 ----------------------NTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNP 447
                                  T+L+S++L+ N ++ +E   F  P + ++ LD+  NP
Sbjct: 561 ELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFNP 620
Query: 448 LHCDC 452
             C C
Sbjct: 621 FDCTC 625

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 59/105 (56%)
Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           ++SLDLS N+I  + + + +    L  L ++ N I+ + +D+F  L  L+ LDLSYN +S
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
            ++ + F+    L  L L  N      ++ +FS L  L+IL++ N
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 59/105 (56%)
Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           ++SLDLS N+I  + + + +    L  L ++ N I+ + +D+F  L  L+ LDLSYN +S
Sbjct: 28  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
            ++ + F+    L  L L  N      ++ +FS L  L+IL++ N
Sbjct: 88  NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 132

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           +R LDLS   +  L S  FE    L  LN++YN+I+ ++ + F GL  L+ L+LSYN + 
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
            +  + F     +  + L  N+I   +D + F  L+ L+ L L +N +
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNAL 374

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 117 TFKGLKE--LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
           TFKGL+   +KT DLS +KI  + K+ F     LE L L+ N I   +D+  F  L  L+
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA-FWGLTHLK 326
Query: 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
            L LD NQ+  VP+ +   L   SL  ++L+ N
Sbjct: 327 ELALDTNQLKSVPDGIFDRL--TSLQKIWLHTN 357

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 89/216 (41%), Gaps = 13/216 (6%)
Query: 99  KLLNLNISYNEISALSKDTFKGLKE--LKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
           K L+L+ S+  +  L+ +TF  L    L  L+L+ NKIS I   AF    HLE+L L  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
            I      + +  L+++  + L  N+ L +  N  + +P  SL  L L    ++ V  + 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSP 473
Query: 217 FPFT-LTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXAI--------PTKQLS 267
            PF  L NL  L L               L  L            +        P   L 
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533
Query: 268 KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303
            LS L  L+L  N F  I    FK LF LK++ + L
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 12  LALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTL 70
           +A  +   + CPS+C C    ++  C+   L  VP  +    Q + L +N+I+ +     
Sbjct: 1   MARIRARGSACPSQCSCSGTTVD--CSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVF 58
Query: 71  SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS 130
               +L  LDL  N++ VL +  F+   +L  L+++ N++ ++ +  F  LK L  + L 
Sbjct: 59  DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 118
Query: 131 YNKISVINKTAFRDTLHLELLI 152
            N        A  D L+L   I
Sbjct: 119 NNPWDC----ACSDILYLSRWI 136

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 89/216 (41%), Gaps = 13/216 (6%)
Query: 99  KLLNLNISYNEISALSKDTFKGLKE--LKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
           K L+L+ S+  +  L+ +TF  L    L  L+L+ NKIS I   AF    HLE+L L  N
Sbjct: 366 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 425
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
            I      + +  L+++  + L  N+ L +  N  + +P  SL  L L    ++ V  + 
Sbjct: 426 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSP 483
Query: 217 FPFT-LTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXAI--------PTKQLS 267
            PF  L NL  L L               L  L            +        P   L 
Sbjct: 484 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 543
Query: 268 KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303
            LS L  L+L  N F  I    FK LF LK++ + L
Sbjct: 544 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 579

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 89/216 (41%), Gaps = 13/216 (6%)
Query: 99  KLLNLNISYNEISALSKDTFKGLKE--LKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
           K L+L+ S+  +  L+ +TF  L    L  L+L+ NKIS I   AF    HLE+L L  N
Sbjct: 361 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 420
Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
            I      + +  L+++  + L  N+ L +  N  + +P  SL  L L    ++ V  + 
Sbjct: 421 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSP 478
Query: 217 FPFT-LTNLHTLALXXXXXXXXXXXXXVTLRTLHXXXXXXXXXXAI--------PTKQLS 267
            PF  L NL  L L               L  L            +        P   L 
Sbjct: 479 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 538
Query: 268 KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303
            LS L  L+L  N F  I    FK LF LK++ + L
Sbjct: 539 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 574

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLD 80
           CPS+C C    ++  C+   L  VP  +    Q + L +NRI+ +         +L  LD
Sbjct: 3   CPSQCSCSGTTVD--CSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLD 60
Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
           L  N++ VL +  F+   +L  L+++ N++ ++ +  F  L+ L  + L  N        
Sbjct: 61  LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDC---- 116
Query: 141 AFRDTLHLELLI 152
           A  D L+L   I
Sbjct: 117 ACSDILYLSRWI 128

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 26/160 (16%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CPSRC C     E  C   GL  VP  + P   T                       L+L
Sbjct: 1   CPSRCSC--SGTEIRCNSKGLTSVPTGI-PSSAT----------------------RLEL 35
Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             NK+  L    F+   +L  L++S N+I +L    F  L +L  L L  NK+  +    
Sbjct: 36  ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV 95
Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
           F     L+ L L  N +    D  IF  L SL+ + L  N
Sbjct: 96  FDKLTQLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTN 134

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLD 80
           CPS+C C    ++  C+   L  VP  +    Q + L +N+I+ +         +L  LD
Sbjct: 3   CPSQCSCSGTTVD--CSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLD 60
Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
           L  N++ VL +  F+   +L  L+++ N++ ++ +  F  LK L  + L  N        
Sbjct: 61  LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC---- 116
Query: 141 AFRDTLHLELLI 152
           A  D L+L   I
Sbjct: 117 ACSDILYLSRWI 128

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 60  ENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQ-NKLLNLN---ISYNEISALSK 115
           + ++ NV  +L  Y  L  LDLS N ++ L +   E+   +L NL+   +S+N ++ +S 
Sbjct: 27  KQQLPNVPQSLPSYTAL--LDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISS 81
Query: 116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
           + F  +  L+ LDLS N +  +++  F D   LE+L+L +NN     D   F  +  L+ 
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQK 140
Query: 176 LKLDNNQILDVP 187
           L L  NQI   P
Sbjct: 141 LYLSQNQISRFP 152

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33  LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
           LE +C    L  +P  L  +   + L EN +      TL  Y  L  L+L    + K+ V
Sbjct: 14  LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 73
Query: 89  LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
            G          SHN      LL         L++S+N +++L     +GL EL+ L L 
Sbjct: 74  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
            N++  +       T  LE L L+ NN+T    + + + L++L  L L  N +  +P   
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 192
Query: 191 LSN--LPHQSLH 200
             +  LP   LH
Sbjct: 193 FGSHLLPFAFLH 204

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 76  LRSLDLSVNKINVLGSHNFEYQN--KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133
           LR LDLS + I      N + +N   L +LN+SYNE  +L  + FK   +L+ LDL++ +
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
           + V +  +    LHL  ++   +++      ++F  L +L+ L L  N  
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33  LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
           LE +C    L  +P  L  +   + L EN +      TL  Y  L  L+L    + K+ V
Sbjct: 13  LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89  LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
            G          SHN      LL         L++S+N +++L     +GL EL+ L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
            N++  +       T  LE L L+ NN+T    + + + L++L  L L  N +  +P   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
             +  LP   LH
Sbjct: 192 FGSHLLPFAFLH 203

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33  LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
           LE +C    L  +P  L  +   + L EN +      TL  Y  L  L+L    + K+ V
Sbjct: 13  LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 89  LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
            G          SHN      LL         L++S+N +++L     +GL EL+ L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
            N++  +       T  LE L L+ NN+T    + + + L++L  L L  N +  +P   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
             +  LP   LH
Sbjct: 192 FGSHLLPFAFLH 203

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33  LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
           LE +C    L  +P  L  +   + L EN +      TL  Y  L  L+L    + K+ V
Sbjct: 13  LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 89  LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
            G          SHN      LL         L++S+N +++L     +GL EL+ L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
            N++  +       T  LE L L+ NN+T    + + + L++L  L L  N +  +P   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
             +  LP   LH
Sbjct: 192 FGSHLLPFAFLH 203

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77  RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
           ++LDLS N +  LGS++F    +L  L++S  EI  +    ++ L  L TL L+ N I  
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
           +   AF     L+ L+    N+   E+  I   LK+L+ L + +N  Q   +P    SNL
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 148
Query: 195 PHQSLHYLYLNENLIETV 212
              +L +L L+ N I+++
Sbjct: 149 --TNLEHLDLSSNKIQSI 164

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77  RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
           ++LDLS N +  LGS++F    +L  L++S  EI  +    ++ L  L TL L+ N I  
Sbjct: 32  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
           +   AF     L+ L+    N+   E+  I   LK+L+ L + +N  Q   +P    SNL
Sbjct: 92  LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 149
Query: 195 PHQSLHYLYLNENLIETV 212
              +L +L L+ N I+++
Sbjct: 150 --TNLEHLDLSSNKIQSI 165

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Query: 20  AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRS 78
           A CPS+C C DQ L  +C +  L  VP  +  + Q + L  N+I+ +        + L+ 
Sbjct: 4   AGCPSQCSC-DQTL-VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQ 61
Query: 79  LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
           L  + NK+  + +  F+   +L  L+++ N + ++ +  F  LK L  + L  N      
Sbjct: 62  LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC-- 119
Query: 139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
               RD ++L   +    +I    D +  +   S +
Sbjct: 120 --ECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAK 153

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77  RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
           ++LDLS N +  LGS++F    +L  L++S  EI  +    ++ L  L TL L+ N I  
Sbjct: 32  KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
           +   AF     L+ L+    N+   E+  I   LK+L+ L + +N  Q   +P    SNL
Sbjct: 92  LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 149
Query: 195 PHQSLHYLYLNENLIETV 212
              +L +L L+ N I+++
Sbjct: 150 --TNLEHLDLSSNKIQSI 165

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77  RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
           ++LDLS N +  LGS++F    +L  L++S  EI  +    ++ L  L TL L+ N I  
Sbjct: 33  KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
           +   AF     L+ L+    N+   E+  I   LK+L+ L + +N  Q   +P    SNL
Sbjct: 93  LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 150
Query: 195 PHQSLHYLYLNENLIETV 212
              +L +L L+ N I+++
Sbjct: 151 --TNLEHLDLSSNKIQSI 166

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33  LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
           LE +C    L  +P  L  +   + L EN +      TL  Y  L  L+L    + K+ V
Sbjct: 13  LEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 89  LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
            G          SHN      LL         L++S+N +++L     +GL EL+ L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
            N++  +       T  LE L L+ NN+T    + + + L++L  L L  N +  +P   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
             +  LP   LH
Sbjct: 192 FGSHLLPFAFLH 203

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77  RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
           ++LDLS N +  LGS++F    +L  L++S  EI  +    ++ L  L TL L+ N I  
Sbjct: 33  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
           +   AF     L+ L+    N+   E+  I   LK+L+ L + +N  Q   +P    SNL
Sbjct: 93  LALGAFSGLSSLQKLVALETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 150
Query: 195 PHQSLHYLYLNENLIETV 212
              +L +L L+ N I+++
Sbjct: 151 --TNLEHLDLSSNKIQSI 166

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 10/188 (5%)
Query: 27  QCFDQKLEASCTDAGLEVVP--IQLNPEVQTIILRENRISNV-HYTLSFYIELRSLDLSV 83
           +CF +  E   T A L  +P  I+    ++ ++L  N    +     + +  LR L +  
Sbjct: 274 RCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKG 333
Query: 84  NKINV-LGSHNFEYQNKLLNLNISYNEISA--LSKDTFKGLKELKTLDLSYNKISVINKT 140
           N   + LG+   E    L  L++S+++I A        K L+ L+ L+LSYN+   +   
Sbjct: 334 NMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQ 393
Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN-NVLSNLPHQSL 199
           AF++   LELL ++F ++        F +L  LR+L L ++ +LD  N ++L+ L  Q L
Sbjct: 394 AFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL-SHCLLDTSNQHLLAGL--QDL 450
Query: 200 HYLYLNEN 207
            +L L  N
Sbjct: 451 RHLNLQGN 458

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 74  IELRSL-DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
           +EL +L DL + +I+   ++ F Y + +  L + +N I  L    F+ +  L  L L  N
Sbjct: 71  VELLNLNDLQIEEID---TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127
Query: 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
            +S + +  F +T  L  L +S NN+   ED + F +  SL+ L+L +N++  V  +++ 
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIP 186
Query: 193 NLPHQSLHY 201
           +L H ++ Y
Sbjct: 187 SLFHANVSY 195

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%)
Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           ++SLDLS NKI  +G  +      L  L +  + I+ +  D F  L  L+ LDLS N +S
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
            ++ + F     L+ L L  N       + +F +L +L+ L++ N
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 33  LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
           LE +C    L  +P  L  +   + L EN +      TL  Y  L  L+L    + K+ V
Sbjct: 13  LEVNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89  LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
            G          SHN      LL         L++S+N +++L     +GL EL+ L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
            N++  +       T  LE L L+ N++T    + + + L++L  L L  N +  +P   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
             +  LP   LH
Sbjct: 192 FGSHLLPFAFLH 203

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 53/105 (50%)
Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           ++SLDLS NKI  +G  +      L  L +  + I+ +  D F  L  L+ LDLS N +S
Sbjct: 54  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
            ++ + F     L+ L L  N       + +F +L +L+ L++ N
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 158

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 33  LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
           LE +C    L  +P  L  +   + L EN +      TL  Y  L  L+L    + K+ V
Sbjct: 13  LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89  LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
            G          SHN      LL         L++S+N +++L     +GL EL+ L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
            N++  +       T  LE L L+ N +T    + + + L++L  L L  N +  +P   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
             +  LP   LH
Sbjct: 192 FGSHLLPFAFLH 203

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 77  RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
           ++LDLS N +  LGS++F    +L  L++S  EI  +    ++ L  L TL L+ N I  
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN--QILDVPNNVLSNL 194
           +   AF     L+ L+    N+   E+  I   LK+L+ L + +N  Q   +P    SNL
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLP-EYFSNL 148
Query: 195 PHQSLHYLYLNENLIETV 212
            +  L +L L+ N I+++
Sbjct: 149 TN--LEHLDLSSNKIQSI 164

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 25/192 (13%)
Query: 33  LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDL---SVNKINV 88
           LE +C    L  +P  L  +   + L EN +      TL  Y  L  L+L    + K+ V
Sbjct: 13  LEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 89  LG----------SHNFEYQNKLLN--------LNISYNEISALSKDTFKGLKELKTLDLS 130
            G          SHN      LL         L++S+N +++L     +GL EL+ L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
            N++  +       T  LE L L+ N +T    + + + L++L  L L  N +  +P   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELP-AGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 191 LSN--LPHQSLH 200
             +  LP   LH
Sbjct: 192 FGSHLLPFAFLH 203

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	608
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-74
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-44
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-54
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-44
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-51
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-50
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-36
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-48
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-35
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-45
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-42
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-35
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-35
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-22
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-20
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-33
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-25
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-31
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-24
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-17
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	3e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	9e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  243 bits (622), Expect = 6e-74
 Identities = 105/516 (20%), Positives = 170/516 (32%), Gaps = 140/516 (27%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CP RC+C  Q     C       VP  +  E                        R LDL
Sbjct: 3   CPPRCECSAQDRAVLCHRKRFVAVPEGIPTE-----------------------TRLLDL 39

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             N+I  L    F     L  L ++ N +SA+    F  L  L+TL L  N++ +I    
Sbjct: 40  GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99

Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
           F    +L  L +S N I    D  +F  L +L+ L++ +N ++ + +   S L   SL  
Sbjct: 100 FTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFSGLN--SLEQ 156

Query: 202 LYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261
           L L +  + ++   +    L  L  L L    I+ I + SF  L  L  L++S+      
Sbjct: 157 LTLEKCNLTSIPTEAL-SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 262 PTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPL 321
            T        L +L ++  N + +  +A + L  L+                        
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR------------------------ 251

Query: 322 LLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQ 381
                                 L+LS N  S I+      L  L+ +++           
Sbjct: 252 ---------------------FLNLSYNPISTIEGSMLHELLRLQEIQLV---------- 280

Query: 382 RAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISF 440
                              L  +    F+G   L+ +++ GN L+ LE S F  +  +  
Sbjct: 281 ----------------GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324

Query: 441 LDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIK 500
           L L  NPL CDC LLW++                                         +
Sbjct: 325 LILDSNPLACDCRLLWVF-----------------------------------------R 343

Query: 501 NNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCE 536
               L        C++P  ++G E K  P+  +   
Sbjct: 344 RRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNY 379

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  195 bits (497), Expect = 4e-56
 Identities = 79/281 (28%), Positives = 123/281 (43%), Gaps = 9/281 (3%)

Query: 4   FLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRI 63
           ++ C  +  A +   +  CPS C C +Q  +  CT  GL  VP  +    + + L EN I
Sbjct: 29  WILCAAIAAAASAGPQN-CPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNI 87

Query: 64  SNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK 122
             +   T      L  L L  N I  +    F     L  L +  N ++ +    F+ L 
Sbjct: 88  QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILS-FNNITYFEDSEIFSSLKSLRILKLDNN 181
           +L+ L L  N I  I   AF     L  L L     + Y  +   F  L +L+ L L   
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC 206

Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
            I D+PN  L+ L    L  L ++ N    +   SF   L++L  L + ++ +S I  ++
Sbjct: 207 NIKDMPN--LTPLV--GLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNA 261

Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
           F  L +L  L+L++NNLS++P    + L  LV L L  N +
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  164 bits (416), Expect = 1e-44
 Identities = 82/417 (19%), Positives = 136/417 (32%), Gaps = 121/417 (29%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           +   +  +   +S + +    +T     L L  NNI   + ++ F  L  L +L+L  N 
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNT---RYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNS 110

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           I  +     + L   SL+ L L +N +  +   +F   L+ L  L L +N I  I   +F
Sbjct: 111 IRQIEVGAFNGLA--SLNTLELFDNWLTVIPSGAF-EYLSKLRELWLRNNPIESIPSYAF 167

Query: 243 VTLRTLHSLDLSNNN-LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
             + +L  LDL     L  I       L  L  L+L   N  ++       L  L+    
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLE---- 221

Query: 302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKS 361
                                                     L++SGN+F  I   +F  
Sbjct: 222 -----------------------------------------ELEMSGNHFPEIRPGSFHG 240

Query: 362 LFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421
           L SLK + +                           N  +  +    F G  +L  ++L 
Sbjct: 241 LSSLKKLWVM--------------------------NSQVSLIERNAFDGLASLVELNLA 274

Query: 422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTS 480
            N+LS L    F PL  +  L L  NP +CDC++LWL   ++                  
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLR------------------ 316

Query: 481 NTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCES 537
                                 +  T      +C +P  ++G  +  V + S  C +
Sbjct: 317 ---------------------EYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSA 352

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 4e-12
 Identities = 43/222 (19%), Positives = 71/222 (31%), Gaps = 56/222 (25%)

Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSA-LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 304
                +  +   LS +P      + +    L+L  NN   I +  F+ L  L+       
Sbjct: 54  NQFSKVVCTRRGLSEVP----QGIPSNTRYLNLMENNIQMIQADTFRHLHHLE------- 102

Query: 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
                                                  L L  N+   I+  AF  L S
Sbjct: 103 --------------------------------------VLQLGRNSIRQIEVGAFNGLAS 124

Query: 365 LKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL-KG 422
           L    + L  N L  I   AF    +L  + +  N  ++ +PS  F    +L  + L + 
Sbjct: 125 LN--TLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGEL 181

Query: 423 NSLSHLEASHFP-LERISFLDLSDNPLHCDCNLLWLWILVQL 463
             L ++    F  L  + +L+L    +    NL  L  L +L
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  190 bits (484), Expect = 3e-54
 Identities = 74/301 (24%), Positives = 121/301 (40%), Gaps = 31/301 (10%)

Query: 4   FLTCIFLILALTKLNKA-ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENR 62
            L  + L+  + +   A  CPS C C +Q  +  C    L  VP  ++            
Sbjct: 16  SLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTN---------- 65

Query: 63  ISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK 122
                         R L+L  N+I ++  ++F++   L  L +S N I  +    F GL 
Sbjct: 66  -------------TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL-DNN 181
            L TL+L  N+++ I   AF     L+ L L  N I        F+ + SLR L L +  
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGELK 171

Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
           ++  +       L   +L YL L    +  +   +    L  L  L LS N +S I   S
Sbjct: 172 RLSYISEGAFEGLS--NLRYLNLAMCNLREI--PNLTP-LIKLDELDLSGNHLSAIRPGS 226

Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
           F  L  L  L +  + +  I       L +LV ++L+ NN + +    F  L  L+ + +
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 302 N 302
           +
Sbjct: 287 H 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  162 bits (413), Expect = 2e-44
 Identities = 80/417 (19%), Positives = 139/417 (33%), Gaps = 121/417 (29%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           +   +      +  +      +T    LL L  N I   + +  F  L+ L IL+L  N 
Sbjct: 44  QFSKVICVRKNLREVPDGISTNT---RLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNH 99

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           I  +     + L   +L+ L L +N + T+ + +F   L+ L  L L +N I  I   +F
Sbjct: 100 IRTIEIGAFNGLA--NLNTLELFDNRLTTIPNGAF-VYLSKLKELWLRNNPIESIPSYAF 156

Query: 243 VTLRTLHSLDLSNNN-LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
             + +L  LDL     LS I       LS L  L+L+  N   I       L  L     
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLD---- 210

Query: 302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKS 361
                                                     LDLSGN+ S I   +F+ 
Sbjct: 211 -----------------------------------------ELDLSGNHLSAIRPGSFQG 229

Query: 362 LFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421
           L  L+ + +                              ++ +    F    +L  ++L 
Sbjct: 230 LMHLQKLWMI--------------------------QSQIQVIERNAFDNLQSLVEINLA 263

Query: 422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTS 480
            N+L+ L    F PL  +  + L  NP +C+C++LWL   ++                  
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIK------------------ 305

Query: 481 NTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCES 537
                                + + +      +C++PP++KG  +  + +N   C +
Sbjct: 306 ---------------------DMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYA 341

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.7 bits (220), Expect = 7e-19
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 59  RENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDT 117
              R+S +          LR L+L++  +  +   N     KL  L++S N +SA+   +
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGS 226

Query: 118 FKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177
           F+GL  L+ L +  ++I VI + AF +   L  + L+ NN+T     ++F+ L  L  + 
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIH 285

Query: 178 LDNN 181
           L +N
Sbjct: 286 LHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 8e-14
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 54  QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
           + + L    +  +   L+  I+L  LDLS N ++ +   +F+    L  L +  ++I  +
Sbjct: 188 RYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 114 SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
            ++ F  L+ L  ++L++N ++++    F    HLE + L  N
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  193 bits (493), Expect = 3e-54
 Identities = 86/435 (19%), Positives = 162/435 (37%), Gaps = 32/435 (7%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLD 80
              +C   +     +C + GL  +P  L    + +    N +  +  T  S  I L  LD
Sbjct: 4   SDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63

Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
           L+  +I  +    F+ Q++L  L ++ N +  +++    G K LK L      IS I+  
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
              +   LE L L  N+I+  +  +     + L++L   NN I  +    +S+L   +  
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
            L LN N I  +   +F   +        + N++         T+++L      + +   
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 261 IPTKQLSKLSA--LVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSL 316
           I       L    + +++L  + F NI S  F     L+ + +    +  L S       
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS------- 295

Query: 317 SLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 376
                           L  L TLK   L LS N F N+  ++  +  SL  + I      
Sbjct: 296 ---------------GLVGLSTLKK--LVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 377 DSIDQRAFVDNIQLETVIINENM-NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-P 434
             +      +   L  + ++ +        +   +  ++L+S++L  N    L+   F  
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 435 LERISFLDLSDNPLH 449
             ++  LDL+   L 
Sbjct: 399 CPQLELLDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  169 bits (430), Expect = 2e-45
 Identities = 86/421 (20%), Positives = 153/421 (36%), Gaps = 77/421 (18%)

Query: 58  LRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDT 117
           + +  IS   +     + + S++L  +    + S+ F   + L  L+++   +S L    
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SG 296

Query: 118 FKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK 177
             GL  LK L LS NK   + + +  +   L  L +  N       +    +L++LR L 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 178 LDNNQI--LDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
           L ++ I   D  N  L NL    L  L L+ N   ++   +F      L  L L+   + 
Sbjct: 357 LSHDDIETSDCCNLQLRNLS--HLQSLNLSYNEPLSLKTEAFKE-CPQLELLDLAFTRLK 413

Query: 236 FIN-ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLF 294
             + +S F  L  L  L+LS++ L     +    L AL +L+L GN+F   +     SL 
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 295 SLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
           +L  ++I                                          L LS  + S+I
Sbjct: 474 TLGRLEI------------------------------------------LVLSFCDLSSI 491

Query: 355 DSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTN 414
           D  AF SL  +  V ++                          +  L     +       
Sbjct: 492 DQHAFTSLKMMNHVDLS--------------------------HNRLTSSSIEALSHLKG 525

Query: 415 LKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTT 473
           +  ++L  N +S +  S  P L +   ++L  NPL C C+ ++     +  ++   +T  
Sbjct: 526 IY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTED 584

Query: 474 V 474
            
Sbjct: 585 T 585

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 36/268 (13%), Positives = 70/268 (26%), Gaps = 74/268 (27%)

Query: 221 LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
             +   L  S N++  I  ++F  L  L  LDL+   +  I          L  L L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 281 NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLK 340
               +   A     +LK                                           
Sbjct: 92  PLIFMAETALSGPKALK------------------------------------------- 108

Query: 341 CDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMN 400
              L       S+ID +   +  +L+   + L  N                        +
Sbjct: 109 --HLFFIQTGISSIDFIPLHNQKTLE--SLYLGSN------------------------H 140

Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF---PLERISFLDLSDNPLHCDCNLLWL 457
           +  +          LK +  + N++ +L               L+L+ N +       + 
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 458 WILVQLQVKSTMETTTVAYEMTSNTSIS 485
             + Q       +   V ++   N++I 
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  187 bits (478), Expect = 4e-52
 Identities = 98/462 (21%), Positives = 167/462 (36%), Gaps = 39/462 (8%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLD 80
             + C      +   C D  L  VP  +    + I L  N +  +  Y+ S + EL+ LD
Sbjct: 3   SLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62

Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
           LS  +I  +    +   + L NL ++ N I + S  +F GL  L+ L     K++ +   
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122

Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH--QS 198
                + L+ L ++ N I   +    FS+L +L  + L  N I  +  N L  L    Q 
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN-IISFINESSFVTLRTLHSLDLS--- 254
              L ++ N I+ + D +  F    LH L L  N   S I ++    L  LH   L    
Sbjct: 183 NLSLDMSLNPIDFIQDQA--FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 255 ---NNNLSAIPTKQLSKLSALV--NLDLSGNNFSNIDSVAFKSLFSLKL-----VKINLI 304
                NL       +  L  +      L+  N  + D V F  L ++       V I  +
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

Query: 305 PNLDSIDQPLSLSLPPLLLSL-----------------SIPLAFSLTPLGTLKCDRLDLS 347
            ++    +  SLS+    L                      ++F    L +L    LDLS
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLS--YLDLS 358

Query: 348 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSK 407
            N  S     ++  L +  L  ++L  N   I    F+   +L+ +    +   +     
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 408 LFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL 448
            F     L  + +   +        F  L  ++ L ++ N  
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  160 bits (406), Expect = 3e-42
 Identities = 82/432 (18%), Positives = 143/432 (33%), Gaps = 51/432 (11%)

Query: 48  QLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINV-------LGSHNFEYQNKL 100
           +      ++ +  N I  +       I+L  L L  N  +                   +
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 101 LNLNISYNEISALSKDTFKGLKEL--KTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
           L        +        +GL ++      L+Y      +   F    ++  + L+  +I
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
            Y ED          + L +   Q+   P   L  L       L L  N           
Sbjct: 298 KYLED---VPKHFKWQSLSIIRCQLKQFPTLDLPFL-----KSLTLTMNKGSISFKKVA- 348

Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRT--LHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
             L +L  L LS N +SF    S+  L T  L  LDLS N    +       L  L +LD
Sbjct: 349 --LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLD 405

Query: 277 LSGNNFSNIDSV-AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTP 335
              +    +    AF SL  L    +++                    +  I        
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLL--YLDISYT-----------------NTKIDFDGIFLG 446

Query: 336 LGTLKCDRLDLSGNNF-SNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETV 393
           L +L    L ++GN+F  N  S  F +  +L    ++L    L+ I    F    +L+ +
Sbjct: 447 LTSLN--TLKMAGNSFKDNTLSNVFANTTNLT--FLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 394 IINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLER-ISFLDLSDNPLHCDC 452
            ++ N NL  L S  +    +L ++    N +   +       + ++F +L++N + C C
Sbjct: 503 NMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561

Query: 453 NLLWLWILVQLQ 464
                   V+ Q
Sbjct: 562 EHQKFLQWVKEQ 573

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  135 bits (343), Expect = 6e-34
 Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 42  LEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFE--YQNK 99
           L+  P    P ++++ L  N+ S           L  LDLS N ++  G  ++     N 
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT-AFRDTLHLELLILSFNNI 158
           L +L++S+N    +S   F GL+EL+ LD  ++ +  + +  AF     L  L +S+ N 
Sbjct: 378 LRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDV-PNNVLSNLPHQSLHYLYLNENLIETVLDNSF 217
               D  IF  L SL  LK+  N   D   +NV +N    +L +L L++  +E +    F
Sbjct: 437 KIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT--NLTFLDLSKCQLEQISWGVF 493

Query: 218 PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL 277
             TL  L  L +S N + F++ S +  L +L +LD S N +            +L   +L
Sbjct: 494 D-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

Query: 278 SGNNFS 283
           + N+ +
Sbjct: 553 TNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.8 bits (205), Expect = 8e-17
 Identities = 52/292 (17%), Positives = 94/292 (32%), Gaps = 72/292 (24%)

Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
            +  + ++  VP+++ S+        + L+ N ++ +   SF    + L  L LS   I 
Sbjct: 16  YQCMDQKLSKVPDDIPSST-----KNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIE 69

Query: 236 FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFS 295
            I + ++  L  L +L L+ N + +      S L++L NL       ++++S     L +
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 296 LKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNID 355
           LK  K+N+  N               + S  +P  FS   L  L    +DLS N    I 
Sbjct: 130 LK--KLNVAHNF--------------IHSCKLPAYFS--NLTNLV--HVDLSYNYIQTIT 169

Query: 356 SVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNL 415
               + L                                                     
Sbjct: 170 VNDLQFLRENPQ----------------------------------------------VN 183

Query: 416 KSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
            S+ +  N +  ++   F   ++  L L  N    +     L  L  L V  
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  181 bits (462), Expect = 4e-51
 Identities = 101/460 (21%), Positives = 179/460 (38%), Gaps = 64/460 (13%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV-HYTLSFYIELRSLD 80
             S C        A C + GL  VP +L   V  + L  N I+ +   + S   +L+ L 
Sbjct: 4   GTSECSVIGY--NAICINRGLHQVP-ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLK 60

Query: 81  LSVNKIN-VLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI--SVI 137
           +       V+ ++ F   + L+ L + YN+   L    F GL  L+ L L+   +  +V+
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 138 NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ 197
           +   F+    LE+L+L  NNI   + +  F +++   +L L  N++  +    L N   +
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180

Query: 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
               L L+                       ++   + +    +     ++ +LDLS N 
Sbjct: 181 HFTLLRLSSI-----------------TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 258 LSAIPTKQLSKLSALVNL-------------DLSGNNFSNIDSVAFKSLFSLKLVKINLI 304
                 K+     A   +                  NF + D+  FK L +  +   +L 
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283

Query: 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
            +         +         ++      +    L+  +L L+ N  + ID  AF  L  
Sbjct: 284 KS--------KIF--------ALL-KSVFSHFTDLE--QLTLAQNEINKIDDNAFWGLTH 324

Query: 365 LKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGN 423
           L   K+NL  N L SID R F +  +LE + ++ N +++ L  + F G  NLK ++L  N
Sbjct: 325 LL--KLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN 381

Query: 424 SLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWL--WI 459
            L  +    F  L  +  + L  NP  C C  + +L  W+
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.1 bits (203), Expect = 9e-17
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 8/178 (4%)

Query: 5   LTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS 64
                 I +L   N     S     + K   + T  GLE         V+T  L +++I 
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE------ASGVKTCDLSKSKIF 288

Query: 65  NV-HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKE 123
            +     S + +L  L L+ N+IN +  + F     LL LN+S N + ++    F+ L +
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
           L+ LDLSYN I  +   +F    +L+ L L  N +    D  IF  L SL+ + L  N
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 53/306 (17%), Positives = 91/306 (29%), Gaps = 65/306 (21%)

Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFS-NIDSVAFKSLFSLKLVKINLIP 305
            ++ +DLS N+++ +     S+L  L  L +        I +  F+ L SL         
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI-------- 82

Query: 306 NLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSL 365
                                                 L L  N F  +++ AF  L +L
Sbjct: 83  -------------------------------------ILKLDYNQFLQLETGAFNGLANL 105

Query: 366 KLVKINLIPNL---DSIDQRAFVDNIQLETVIINENMNLKQL-PSKLFQGNTNLKSVSLK 421
           +   + L         +    F     LE +++ +N N+K++ P+  F        + L 
Sbjct: 106 E--VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLT 162

Query: 422 GNSLSHLEAS---HFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEM 478
            N +  +      +F  +  + L LS   L  D N  WL              TT+    
Sbjct: 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITL-QDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 479 TSNTSISPG------TTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENS 532
                            T+ Q +      N   +    N K       KGLE   V   +
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV--KT 279

Query: 533 VHCESN 538
                +
Sbjct: 280 CDLSKS 285

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  185 bits (473), Expect = 6e-51
 Identities = 111/451 (24%), Positives = 184/451 (40%), Gaps = 34/451 (7%)

Query: 25  RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSV 83
           +C    +  +  C+   L  VP  L   +  + L  N++  +     + Y +L SLD+  
Sbjct: 1   KCTVSHEVAD--CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 84  NKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFR 143
           N I+ L     +    L  LN+ +NE+S LS  TF     L  L L  N I  I    F 
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
              +L  L LS N ++  +       L++L+ L L NN+I  + +  L    + SL  L 
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 204 LNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF---VTLRTLHSLDLSNNNLSA 260
           L+ N I+      F   +  L  L L++  +           +   ++ +L LSN+ LS 
Sbjct: 178 LSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 261 IPTKQLS--KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSID----- 311
                    K + L  LDLS NN + + + +F  L  L+   +  N I +L S       
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 312 --QPLSLS-----LPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
             + L+L          L SL     FS   L  L+   L++  N+   I S  F  L +
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE--HLNMEDNDIPGIKSNMFTGLIN 354

Query: 365 LKLVKI--NLIPNLDSIDQRAFVD--NIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420
           LK + +  +   +L ++    FV   +  L  + + +N  + ++ S  F    +L+ + L
Sbjct: 355 LKYLSLSNSFT-SLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDL 412

Query: 421 KGNSLSH-LEASHF-PLERISFLDLSDNPLH 449
             N +   L    +  LE I  + LS N   
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  180 bits (459), Expect = 4e-49
 Identities = 96/413 (23%), Positives = 178/413 (43%), Gaps = 28/413 (6%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           +  L+L+ N++  L + NF   ++L +L++ +N IS L  +  + L  LK L+L +N++S
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP 195
            ++   F    +L  L L  N+I   +++  F   K+L  L L +N +          L 
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 196 HQSLHYLYLNENLIETVLDNSF-PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
             +L  L L+ N I+ +       F  ++L  L LSSN I   +   F  +  L  L L+
Sbjct: 146 --NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 255 NNNLSAIPTKQLS---KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
           N  L    T++L      +++ NL LS +  S   +  F  L    L  ++L  N  ++ 
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 312 QPLSLSLPPLLLSLSI-------PLAFSLTPLGTLK-------CDRLDLSGNNFSNIDSV 357
              S +  P L    +         + SL  L  ++         +  +S  +   ID  
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 358 AFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINEN-MNLKQLPSKLFQG--NT 413
           +F+ L  L+   +N+  N +  I    F   I L+ + ++ +  +L+ L ++ F    ++
Sbjct: 324 SFQWLKCLE--HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 414 NLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
            L  ++L  N +S +E+  F  L  +  LDL  N +  +        L  +  
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (445), Expect = 4e-47
 Identities = 102/433 (23%), Positives = 166/433 (38%), Gaps = 59/433 (13%)

Query: 50  NPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFE---------YQNK 99
              +  + L  N ++ V   + ++  +L    L  N I  L SH+            +  
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
               +IS   +  +   +F+ LK L+ L++  N I  I    F   ++L+ L LS +  +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 160 YFE-DSEIFSSL--KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
                +E F SL    L IL L  N+I  + ++  S L    L  L L  N I   L   
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG--HLEVLDLGLNEIGQELTGQ 424

Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP--TKQLSKLSALVN 274
               L N+  + LS N    +  +SF  + +L  L L    L  +         L  L  
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 275 LDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLT 334
           LDLS NN +NI+    + L  L+++ +    NL  + +  +   P   L           
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLK---------- 533

Query: 335 PLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVI 394
            L  L    L+L  N F  I    FK LF LK++ +                        
Sbjct: 534 GLSHLH--ILNLESNGFDEIPVEVFKDLFELKIIDLG----------------------- 568

Query: 395 INENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPLHCDC 452
                NL  LP+ +F    +LKS++L+ N ++ +E   F      ++ LD+  NP  C C
Sbjct: 569 ---LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 453 -NLLWLWILVQLQ 464
            ++ W    +   
Sbjct: 626 ESIAWFVNWINET 638

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  161 bits (410), Expect = 2e-42
 Identities = 92/411 (22%), Positives = 144/411 (35%), Gaps = 58/411 (14%)

Query: 54  QTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA 112
             + L  N I  +          L +LDLS N ++            L  L +S N+I A
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 113 LSKDTFK--GLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS-- 168
           L  +         LK L+LS N+I   +   F     L  L L+   +      ++    
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
           +  S+R L L N+Q+    N     L   +L  L L+ N +  V ++SF + L  L    
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFF 278

Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNN---------NLSAIPTKQLSKLSALVNLDLSG 279
           L  N I  +   S   L  +  L+L  +         +L  I       L  L +L++  
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 280 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL 339
           N+   I S  F  L +LK                LSLS     L       F       L
Sbjct: 339 NDIPGIKSNMFTGLINLKY---------------LSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM 399
               L+L+ N  S I+S AF  L            +L+ +D              +  N 
Sbjct: 384 H--ILNLTKNKISKIESDAFSWL-----------GHLEVLD--------------LGLNE 416

Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLH 449
             ++L  + ++G  N+  + L  N    L  + F  +  +  L L    L 
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  177 bits (452), Expect = 3e-50
 Identities = 79/407 (19%), Positives = 149/407 (36%), Gaps = 44/407 (10%)

Query: 59  RENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTF 118
           R+     +   L +      + + +   +V         N    +    + +  L     
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 119 KGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178
              ++++ L+L+  +I  I+  AF     ++ L + FN I Y     +F ++  L +L L
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVL 124

Query: 179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN 238
           + N +  +P  +  N P   L  L ++ N +E + D++F    T+L  L LSSN ++ ++
Sbjct: 125 ERNDLSSLPRGIFHNTP--KLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVD 181

Query: 239 ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKL 298
            S      +L   ++S N LS +         A+  LD S N+ + +       L  LKL
Sbjct: 182 LSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVELTILKL 233

Query: 299 VKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVA 358
              NL                            +   L       +DLS N    I    
Sbjct: 234 QHNNLT---------------------DTAWLLNYPGLVE-----VDLSYNELEKIMYHP 267

Query: 359 FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSV 418
           F  +  L+  ++ +  N              L+ + ++ N +L  +     Q    L+++
Sbjct: 268 FVKMQRLE--RLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ-FDRLENL 323

Query: 419 SLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
            L  NS+  L+ S      +  L LS N   C+        + +  V
Sbjct: 324 YLDHNSIVTLKLSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAV 368

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  171 bits (436), Expect = 4e-49
 Identities = 70/263 (26%), Positives = 122/263 (46%), Gaps = 29/263 (11%)

Query: 22  CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
           CP  C C+++ K+  SC   GL+ VP+ +                           + + 
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAA-----------------------SQRIF 38

Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN-KISVINK 139
           L  N+I+ + + +F     L  L +  N ++ +    F GL  L+ LDLS N ++  ++ 
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
             F     L  L L    +       +F  L +L+ L L +N +  +P++   +L   +L
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLG--NL 155

Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS 259
            +L+L+ N I +V + +F   L +L  L L  N ++ ++  +F  L  L +L L  NNLS
Sbjct: 156 THLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 260 AIPTKQLSKLSALVNLDLSGNNF 282
           A+PT+ L+ L AL  L L+ N +
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  136 bits (344), Expect = 3e-36
 Identities = 68/366 (18%), Positives = 114/366 (31%), Gaps = 117/366 (31%)

Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
           + + + L  N+I  VP        +  L  L+L+ N++  +   +F   L  L  L LS 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRN--LTILWLHSNVLARIDAAAF-TGLALLEQLDLSD 89

Query: 232 N-IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290
           N  +  ++ ++F  L  LH+L L    L  +       L+AL  L L  N    +    F
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN 350
           + L +L                                               L L GN 
Sbjct: 150 RDLGNLT---------------------------------------------HLFLHGNR 164

Query: 351 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ 410
            S++   AF+ L SL   ++ L                            +  +    F+
Sbjct: 165 ISSVPERAFRGLHSLD--RLLL------------------------HQNRVAHVHPHAFR 198

Query: 411 GNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTM 469
               L ++ L  N+LS L      PL  + +L L+DNP  CDC    LW           
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW----------- 247

Query: 470 ETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVP 529
                                        ++     +   + + CS P  + G ++K + 
Sbjct: 248 ---------------------------AWLQKFRGSS---SEVPCSLPQRLAGRDLKRLA 277

Query: 530 ENSVHC 535
            N +  
Sbjct: 278 ANDLQG 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  114 bits (287), Expect = 2e-28
 Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 15/222 (6%)

Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 305
                + L  N +S +P         L  L L  N  + ID+ AF  L  L+ + ++   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 306 NLDSIDQPLSLSLPPL-LLSL------SIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVA 358
            L S+D      L  L  L L       +        L  L+   L L  N    +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQ--YLYLQDNALQALPDDT 148

Query: 359 FKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKS 417
           F+ L +L    + L  N + S+ +RAF     L+ +++++N  +  +    F+    L +
Sbjct: 149 FRDLGNLT--HLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMT 205

Query: 418 VSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLW 458
           + L  N+LS L      PL  + +L L+DNP  CDC    LW
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  168 bits (428), Expect = 8e-48
 Identities = 68/286 (23%), Positives = 114/286 (39%), Gaps = 29/286 (10%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLD 80
           CPSRC C   ++   C   GL  VP  +      + L  N++ ++         +L  L 
Sbjct: 1   CPSRCSCSGTEI--RCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58

Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
           LS N ++  G                          +  G   LK LDLS+N +  ++ +
Sbjct: 59  LSSNGLSFKG----------------------CCSQSDFGTTSLKYLDLSFNGVITMS-S 95

Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
            F     LE L    +N+    +  +F SL++L  L + +       N + + L   SL 
Sbjct: 96  NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLE 153

Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
            L +  N  +          L NL  L LS   +  ++ ++F +L +L  L++S+NN  +
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
           + T     L++L  LD S N+         +   S  L  +NL  N
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  133 bits (336), Expect = 7e-35
 Identities = 67/361 (18%), Positives = 125/361 (34%), Gaps = 91/361 (25%)

Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFT-LTNLHTLALS 230
           S   L+L++N++  +P+ V   L    L  L L+ N +      S      T+L  L LS
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQ--LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL-SKLSALVNLDLSGNNFSNIDSVA 289
            N +  +  S+F+ L  L  LD  ++NL  +    +   L  L+ LD+S  +     +  
Sbjct: 87  FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 290 FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGN 349
           F  L SL++               L ++      +         T L  L    LDLS  
Sbjct: 146 FNGLSSLEV---------------LKMAGNSFQENFL---PDIFTELRNLT--FLDLSQC 185

Query: 350 NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLF 409
               +   AF SL SL+++ ++                          + N   L +  +
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMS--------------------------HNNFFSLDTFPY 219

Query: 410 QGNTNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
           +   +L+ +    N +   +          ++FL+L+ N   C C               
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL--------- 270

Query: 468 TMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKA 527
                                        + IK+   L + +  ++C++P D +G+ V +
Sbjct: 271 -----------------------------QWIKDQRQLLVEVERMECATPSDKQGMPVLS 301

Query: 528 V 528
           +
Sbjct: 302 L 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 2/128 (1%)

Query: 58  LRENRISNV-HYTLSFYIELRSLDLSVNK-INVLGSHNFEYQNKLLNLNISYNEISALSK 115
           +         +   +    L  L ++ N          F     L  L++S  ++  LS 
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192

Query: 116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
             F  L  L+ L++S+N    ++   ++    L++L  S N+I   +  E+     SL  
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

Query: 176 LKLDNNQI 183
           L L  N  
Sbjct: 253 LNLTQNDF 260

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  178 bits (452), Expect = 1e-47
 Identities = 103/470 (21%), Positives = 175/470 (37%), Gaps = 53/470 (11%)

Query: 28  CFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKI 86
           C      A      L  VP  L    + ++L  N I  V   +  F  +L+ L+L     
Sbjct: 2   CSFDGRIAFYRFCNLTQVPQVL-NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 87  NV-LGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS--VINKTAFR 143
            + +    F     L  L++  ++I  L  D F+GL  L  L L +  +S  V+    FR
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
           +   L  L LS N I        F  L SL+ +   +NQI  V  + L  L  ++L +  
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 204 LNENLIETVLDNSF-----PFTLTNLHTLALSSNIISFI------------NESSFVTLR 246
           L  N + + +   +     PF    L  L +S N  +                 S +   
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 247 TLHSLDLSNNNLSAIPTKQLSKL--SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 304
            +       +N+        + L  S++ +LDLS     +++S  F++L  LK++ +   
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 305 PNLDSIDQPLSLSLPPL-LLSLS------IPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV 357
             ++ I       L  L +L+LS      +  + +   L  +    +DL  N+ + I   
Sbjct: 301 -KINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVA--YIDLQKNHIAIIQDQ 356

Query: 358 AFKSLFSLK--------LVKINLIPNLDSIDQRA------FVDNIQLETVIINENMNLKQ 403
            FK L  L+        L  I+ IP++  I             N+    + ++EN  L+ 
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN-RLEN 415

Query: 404 LPSKLFQGN-TNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPLHC 450
           L    F     +L+ + L  N  S       P     +  L L +N L  
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  170 bits (433), Expect = 4e-45
 Identities = 102/549 (18%), Positives = 187/549 (34%), Gaps = 105/549 (19%)

Query: 50  NPEVQTIILRENRISNVHYTLSF-------YIELRSLDLSVNKINVLGSHNF-------- 94
              +    L  N + +               + L  LD+S N   V  + NF        
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 95  ----EYQNKLLNLNISYNEISALSKDTFKGLKE--LKTLDLSYNKISVINKTAFRDTLHL 148
                  + ++     ++ I    ++TF GL    ++ LDLS+  +  +N   F     L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
           ++L L++N I    D   F  L +L++L L  N + ++ ++    LP   + Y+ L +N 
Sbjct: 293 KVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLP--KVAYIDLQKNH 349

Query: 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
           I  + D +F F L  L TL L  N ++ I+      + ++  + LS N L  +P   L+ 
Sbjct: 350 IAIIQDQTFKF-LEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTA 403

Query: 269 LSALVNLDLSGNNFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSI 327
                 + LS N   N+D + F   +  L+++ +N      S     + S  P L  L  
Sbjct: 404 NL----IHLSENRLENLDILYFLLRVPHLQILILN-QNRFSSCSGDQTPSENPSLEQL-- 456

Query: 328 PLAFSLTPLGTLKCDRLDLSGNNF-----SNIDSVAFKSLFSLKLVKINLIPN-LDSIDQ 381
                             L  N       + +    F+ L  L+   + L  N L+S+  
Sbjct: 457 -----------------FLGENMLQLAWETELCWDVFEGLSHLQ--VLYLNHNYLNSLPP 497

Query: 382 RAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFL 441
             F     L  + +N N  L  L       N  L+ + +  N L       F    +S L
Sbjct: 498 GVFSHLTALRGLSLNSN-RLTVLSHNDLPAN--LEILDISRNQLLAPNPDVFV--SLSVL 552

Query: 442 DLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKN 501
           D++ N   C+C L      +                                        
Sbjct: 553 DITHNKFICECELSTFINWLN-------------------------------------HT 575

Query: 502 NHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNTMLYVLSFMLLLLSSGVICILMY 561
           N ++     ++ C  P    G+ + ++       E        S  ++   +  + ++  
Sbjct: 576 NVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTI 635

Query: 562 FIYRKRALW 570
               K   +
Sbjct: 636 LTVTKFRGF 644

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  167 bits (424), Expect = 7e-44
 Identities = 86/386 (22%), Positives = 149/386 (38%), Gaps = 36/386 (9%)

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
               +  ++ +     + L   + L LS+N I  +  ++F     L+LL L         
Sbjct: 9   AFYRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFT-L 221
           D E F +L +LRIL L +++I  +  +    L    L  L L    +   +     F  L
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF--HLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 222 TNLHTLALSSNIISFIN-ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA--LVNLDLS 278
             L  L LS N I  +    SF  L +L S+D S+N +  +   +L  L    L    L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 279 GNNFSNIDSVAFKSLFS----------------LKLVKINLIPNLDSIDQPLSLSLPPLL 322
            N+  +  SV +    +                  +       N  S  Q  SL L   +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 323 LSLSI-------PLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 375
           +           P   +   L       LDLS     +++S  F++L  LK++ +     
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-K 301

Query: 376 LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-P 434
           ++ I   AF     L+ + ++ N  L +L S  F G   +  + L+ N ++ ++   F  
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 435 LERISFLDLSDNPLHCDCNLLWLWIL 460
           LE++  LDL DN L     +  +  +
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDI 386

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  153 bits (389), Expect = 2e-39
 Identities = 90/446 (20%), Positives = 158/446 (35%), Gaps = 63/446 (14%)

Query: 40  AGLEVVPIQLNPEVQTIILRENRISNVHYTL---SFYIELRSLDLSVNKINVLGSHNFEY 96
           +  +   + L   +       + I +             +R LDLS   +  L S  FE 
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 97  QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
              L  LN++YN+I+ ++ + F GL  L+ L+LSYN +  +  + F     +  + L  N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQI-----------LDVPNNVLSNLPHQ--SLHYLY 203
           +I   +D   F  L+ L+ L L +N +           + +  N L  LP    + + ++
Sbjct: 349 HIAIIQDQ-TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 204 LNENLIETVLDNSFPFTLTNLHTLALSSNIISFI-NESSFVTLRTLHSLDLSNNNL---- 258
           L+EN +E +    F   + +L  L L+ N  S    + +     +L  L L  N L    
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467

Query: 259 -SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLS 315
            + +       LS L  L L+ N  +++    F  L +L+ + +  N +  L   D P +
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN 527

Query: 316 LSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 375
           L +                         LD+S N     +   F SL  L +     I  
Sbjct: 528 LEI-------------------------LDISRNQLLAPNPDVFVSLSVLDITHNKFI-- 560

Query: 376 LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPL 435
               +   F++ +    V I                   +   S  G SL  L       
Sbjct: 561 -CECELSTFINWLNHTNVTIAGP----------PADIYCVYPDSFSGVSLFSLSTEGCDE 609

Query: 436 ERISFLDLSDNPLHCDCNLLWLWILV 461
           E +         + C   L    + +
Sbjct: 610 EEVLKSLKFSLFIVCTVTLTLFLMTI 635

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.1 bits (182), Expect = 6e-14
 Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 30/222 (13%)

Query: 251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI 310
                 NL+ +P      L+    L LS N    + + +F  L  L+L        L+  
Sbjct: 9   AFYRFCNLTQVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQL--------LELG 56

Query: 311 DQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370
            Q   L++             +   L  L+   LDL  +    +   AF+ LF L  +++
Sbjct: 57  SQYTPLTIDKE----------AFRNLPNLR--ILDLGSSKIYFLHPDAFQGLFHLFELRL 104

Query: 371 --NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL 428
               + +   +    F +   L  + +++N          F    +LKS+    N +  +
Sbjct: 105 YFCGLSDA-VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 429 EASHF---PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
                     + +SF  L+ N L+   ++ W   +   +   
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  172 bits (436), Expect = 2e-46
 Identities = 79/410 (19%), Positives = 150/410 (36%), Gaps = 44/410 (10%)

Query: 56  IILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK 115
           +  R+     +   L +      + + +   +V         N    +    + +  L  
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 116 DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
                 ++++ L+L+  +I  I+  AF     ++ L + FN I Y     +F ++  L +
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTV 127

Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
           L L+ N +  +P  +  N P   L  L ++ N +E + D++F    T+L  L LSSN ++
Sbjct: 128 LVLERNDLSSLPRGIFHNTPK--LTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLT 184

Query: 236 FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFS 295
            ++ S      +L   ++S N LS +         A+  LD S N+ + +       L  
Sbjct: 185 HVDLSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVELTI 236

Query: 296 LKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNID 355
           LKL   NL                            +   L       +DLS N    I 
Sbjct: 237 LKLQHNNLT---------------------DTAWLLNYPGLVE-----VDLSYNELEKIM 270

Query: 356 SVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNL 415
              F  +  L+  ++ +  N              L+ + ++ N +L  +     Q    L
Sbjct: 271 YHPFVKMQRLE--RLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ-FDRL 326

Query: 416 KSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
           +++ L  NS+  L+ S      +  L LS N   C+        + +  V
Sbjct: 327 ENLYLDHNSIVTLKLSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAV 374

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (335), Expect = 4e-33
 Identities = 70/327 (21%), Positives = 127/327 (38%), Gaps = 23/327 (7%)

Query: 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS----SLKSLRILKLDNNQIL 184
             YN      +    D+      +    +I        F     +L + +I+   N+ + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244
            +P  +L +     +  L LN+  IE +   +F      +  L +  N I ++    F  
Sbjct: 65  KLPAALLDSFR--QVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--N 302
           +  L  L L  N+LS++P         L  L +S NN   I+   F++  SL+ +++  N
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
            + ++D +    SL       ++S  L  +L     ++   LD S N+ + +       L
Sbjct: 182 RLTHVD-LSLIPSLF----HANVSYNLLSTLAIPIAVE--ELDASHNSINVVRGPVNVEL 234

Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             LKL   NL       D    ++   L  V ++ N  L+++    F     L+ + +  
Sbjct: 235 TILKLQHNNL------TDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN 287

Query: 423 NSLSHLEASHFPLERISFLDLSDNPLH 449
           N L  L     P+  +  LDLS N L 
Sbjct: 288 NRLVALNLYGQPIPTLKVLDLSHNHLL 314

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  167 bits (424), Expect = 5e-45
 Identities = 78/402 (19%), Positives = 161/402 (40%), Gaps = 34/402 (8%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           ++SLDLS NKI  +G  +      L  L +  + I+ +  D F  L  L+ LDLS N +S
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL-DNNQILDVPNNVLSNL 194
            ++ + F     L+ L L  N       + +F +L +L+ L++ +     ++     + L
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 195 PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
               L+ L +    +      S   ++ ++H L L  +  +F+ E     L ++  L+L 
Sbjct: 148 TS--LNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKL------------VKIN 302
           + NL+      L        +       S +   +F  L  L                +N
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 303 LIPNLDSIDQPLSLSLPPL----LLSLSIP-------LAFSLTPLGTLKCDRLDLSGNNF 351
            + + +  +  +   L  +    +  L IP       L+   + L  +K  R+ +  +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK--RITVENSKV 322

Query: 352 SNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLP--SK 407
             +     + L SL+ + +  NL+      +         L+T+++++N +L+ +    +
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGE 381

Query: 408 LFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH 449
           +     NL S+ +  N+   +  S    E++ FL+LS   + 
Sbjct: 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  150 bits (380), Expect = 5e-39
 Identities = 70/432 (16%), Positives = 147/432 (34%), Gaps = 44/432 (10%)

Query: 54  QTIILRENRISNVHYTLSFY--IELRSLDLS-VNKINVLGSHNFEYQNKLLNLNISYNEI 110
           + + L  N    +  T  F     L++L +  V   + +   +F     L  L I    +
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
                 + K ++++  L L  ++ + + +        +  L L   N+  F+ S      
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS-PLPVD 219

Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF----------- 219
           +    +K    +   + +   + L     + L L+E   +    N               
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 220 ----TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNL 275
                   +  L +    + +   + +  L  +  + + N+ +  +P      L +L  L
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339

Query: 276 DLSGNNFSNI---DSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLL-LSLS--- 326
           DLS N        +S    +  SL+ + +  N + ++    + L  +L  L  L +S   
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-TLKNLTSLDISRNT 398

Query: 327 -IPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFV 385
             P+  S      ++   L+LS      + +   ++L  L +   N + +          
Sbjct: 399 FHPMPDSCQWPEKMR--FLNLSSTGIRVVKTCIPQTLEVLDVSN-NNLDSFSL------- 448

Query: 386 DNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLS 444
              +L+ + I+ N  LK LP         L  + +  N L  +    F  L  +  + L 
Sbjct: 449 FLPRLQELYISRN-KLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 445 DNPLHCDCNLLW 456
            NP  C C  + 
Sbjct: 506 TNPWDCSCPRID 517

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (299), Expect = 1e-28
 Identities = 50/264 (18%), Positives = 99/264 (37%), Gaps = 30/264 (11%)

Query: 42  LEVVPIQLNPEVQTIILRENRISNVHYTLSF-YIELRSLDLSVNKINVLGSHNFEYQNKL 100
           L  V               +    V        + +R L +    +    S  +    K+
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS---VINKTAFRDTLHLELLILSFNN 157
             + +  +++  +     + LK L+ LDLS N +    + N         L+ L+LS N+
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 158 ITYFE-DSEIFSSLKSLRILKLDNNQI---------------LDVPNNVLSNLPH---QS 198
           +   +   EI  +LK+L  L +  N                 L++ +  +  +     Q+
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT 432

Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258
           L  L ++ N +     +SF   L  L  L +S N +  + ++S      L  + +S N L
Sbjct: 433 LEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQL 485

Query: 259 SAIPTKQLSKLSALVNLDLSGNNF 282
            ++P     +L++L  + L  N +
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 54/292 (18%), Positives = 116/292 (39%), Gaps = 31/292 (10%)

Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
           S  +  +    +     +P+ + +      +  L L+ N I  +          NL  L 
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLTAA-----MKSLDLSFNKITYIGHGDLRA-CANLQVLI 56

Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI-DS 287
           L S+ I+ I   +F +L +L  LDLS+N+LS++ +     LS+L  L+L GN +  +  +
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 288 VAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLS 347
             F +L +L+ ++I  +     I +     L  L                    + L++ 
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL--------------------NELEIK 156

Query: 348 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINEN--MNLKQLP 405
             +  N  S + KS+  +  + ++L      + +        +  + + +      +  P
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 406 SKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWL 457
             + + ++ +K ++ +G+ L+    +         L+LS+     DC L  L
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD-DCTLNGL 266

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  161 bits (409), Expect = 8e-45
 Identities = 78/356 (21%), Positives = 133/356 (37%), Gaps = 65/356 (18%)

Query: 20  AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
            +CP RCQC  + +   C+D GLE VP  L P+                          L
Sbjct: 23  PVCPFRCQCHLRVV--QCSDLGLEKVPKDLPPDTAL-----------------------L 57

Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           DL  NKI  +   +F+    L  L +  N+IS +S   F  L +L+ L LS N++  + +
Sbjct: 58  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117

Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD--VPNNVLSNLPHQ 197
              +    L+ L +  N IT    S +F+ L  + +++L  N +    + N     +   
Sbjct: 118 KMPK---TLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-- 171

Query: 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
            L Y+ + +  I T+     P    +L  L L  N I+ ++ +S   L  L  L LS N+
Sbjct: 172 KLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQ 312
           +SA+    L+    L  L L+ N    +          +++V      I+ I + D    
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 313 PLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN--FSNIDSVAFKSLFSLK 366
             +                            + L  N   +  I    F+ ++   
Sbjct: 287 GYNTKKASY--------------------SGVSLFSNPVQYWEIQPSTFRCVYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  135 bits (342), Expect = 1e-35
 Identities = 68/338 (20%), Positives = 122/338 (36%), Gaps = 91/338 (26%)

Query: 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
            +   LDL  NKI+ I    F++  +L  LIL  N I+       F+ L  L  L L  N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKN 110

Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII--SFINE 239
           Q+ ++P  +   L       L ++EN I  V  + F   L  +  + L +N +  S I  
Sbjct: 111 QLKELPEKMPKTL-----QELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIEN 164

Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
            +F  ++ L  + +++ N++ IP      L+    L L GN  + +D+ + K L +L   
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLA-- 219

Query: 300 KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAF 359
                                                      +L LS N+ S +D+ + 
Sbjct: 220 -------------------------------------------KLGLSFNSISAVDNGSL 236

Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
            +   L+        +L+                    N  L ++P      +  ++ V 
Sbjct: 237 ANTPHLR------ELHLN--------------------NNKLVKVPG-GLADHKYIQVVY 269

Query: 420 LKGNSLSHLEASHFP-------LERISFLDLSDNPLHC 450
           L  N++S + ++ F            S + L  NP+  
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (300), Expect = 8e-30
 Identities = 51/225 (22%), Positives = 105/225 (46%), Gaps = 17/225 (7%)

Query: 42  LEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKIN--VLGSHNFEYQN 98
           L+ +P ++   +Q + + EN I+ V     +   ++  ++L  N +    + +  F+   
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 99  KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
           KL  + I+   I+ + +     L EL    L  NKI+ ++  + +   +L  L LSFN+I
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
           +  ++    ++   LR L L+NN+++ VP   L++  +  +  +YL+ N I  +  N F 
Sbjct: 229 SAVDN-GSLANTPHLRELHLNNNKLVKVPGG-LADHKY--IQVVYLHNNNISAIGSNDFC 284

Query: 219 FT-----LTNLHTLALSSNIISF--INESSFVTLRTLHSLDLSNN 256
                    +   ++L SN + +  I  S+F  +    ++ L N 
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  117 bits (294), Expect = 4e-29
 Identities = 60/277 (21%), Positives = 102/277 (36%), Gaps = 33/277 (11%)

Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
            LR+++  +  +  VP ++  +        L L  N I  + D  F   L NLHTL L +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDT-----ALLDLQNNKITEIKDGDFK-NLKNLHTLILIN 85

Query: 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK 291
           N IS I+  +F  L  L  L LS N L  +P K    L     L +  N  + +    F 
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITKVRKSVFN 142

Query: 292 SLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNF 351
            L  + +               + L   PL  S     AF    +  L    + ++  N 
Sbjct: 143 GLNQMIV---------------VELGTNPLKSSGIENGAFQ--GMKKLS--YIRIADTNI 183

Query: 352 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQG 411
           + I      SL  L L   N    +  +D  +      L  + ++ N ++  + +     
Sbjct: 184 TTIPQGLPPSLTELHL-DGN---KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLAN 238

Query: 412 NTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
             +L+ + L  N L  +       + I  + L +N +
Sbjct: 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 51  PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQN------KLLNLN 104
           P ++ + L  N++  V   L+ +  ++ + L  N I+ +GS++F              ++
Sbjct: 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 105 ISYNEI--SALSKDTFKGLKELKTLDLSYNK 133
           +  N +    +   TF+ +     + L   K
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  164 bits (418), Expect = 4e-44
 Identities = 88/432 (20%), Positives = 162/432 (37%), Gaps = 33/432 (7%)

Query: 26  CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLDLSVN 84
           C      +   C +     +P  L    + + L  N + ++       + EL+ LDLS  
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 85  KINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRD 144
           +I  +    ++  + L  L ++ N I +L+   F GL  L+ L      ++ +       
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH--QSLHYL 202
              L+ L ++ N I  F+  E FS+L +L  L L +N+I  +    L  L         L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 203 YLNENLIETVLDNSFPFTLTNLHTLALSSNIISF-INESSFVTLRTLHSLDLSNN---NL 258
            L+ N +  +   +  F    LH L L +N  S  + ++    L  L    L      N 
Sbjct: 183 DLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 259 SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
             +     S L  L NL +     + +D                 + ++  +   L+   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLD---------------YYLDDIIDLFNCLTNVS 285

Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
              L+S++I      +     +   L+L    F    ++  KSL  L             
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQ--HLELVNCKFGQFPTLKLKSLKRLTFTSNKG------ 337

Query: 379 IDQRAFVDNIQLETVIINEN-MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLER 437
            +  + VD   LE + ++ N ++ K   S+   G T+LK + L  N +  + ++   LE+
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 438 ISFLDLSDNPLH 449
           +  LD   + L 
Sbjct: 398 LEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  139 bits (353), Expect = 2e-35
 Identities = 86/454 (18%), Positives = 156/454 (34%), Gaps = 64/454 (14%)

Query: 54  QTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHN-FEYQNKLLNLNISYNEIS 111
           Q ++  E  ++++  + +     L+ L+++ N I        F     L +L++S N+I 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 112 ALSKDTFKGLKELK----TLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
           ++     + L ++     +LDLS N ++ I   AF++ + L  L L  N  +        
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCI 221

Query: 168 SSLKSLRILKL------DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
             L  L + +L      +   +     + L  L + ++    L                L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
           TN+ + +L S  I  + + S+        L+L N      PT +L  L     L  + N 
Sbjct: 282 TNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLK---RLTFTSNK 336

Query: 282 FSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQPLSLSLPPLLLS----LSIPLAFS 332
             N  S     L SL+ +      ++        D   + SL  L LS    +++   F 
Sbjct: 337 GGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFL 393

Query: 333 LTPLGTLKCDRLDLSGNNFSNIDSV-AFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQL 390
              L  L+   LD   +N   +     F SL +L    +++            F     L
Sbjct: 394 --GLEQLE--HLDFQHSNLKQMSEFSVFLSLRNLI--YLDISHTHTRVAFNGIFNGLSSL 447

Query: 391 ETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF----------------- 433
           E + +  N   +     +F    NL  + L    L  L  + F                 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 434 --------PLERISFLDLSDNPLHCDCN-LLWLW 458
                    L  +  + L  NP  C C  + +L 
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 541

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (270), Expect = 8e-25
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 8/186 (4%)

Query: 51  PEVQTIILRENRISNVH---YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY 107
           P ++ + L  N +S       +      L+ LDLS N +  + S NF    +L +L+  +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQH 405

Query: 108 NEISALSK-DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEI 166
           + +  +S+   F  L+ L  LD+S+    V     F     LE+L ++ N+       +I
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHT 226
           F+ L++L  L L   Q+  +     ++L   SL  L +  N +++V D  F   LT+L  
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMASNQLKSVPDGIFD-RLTSLQK 522

Query: 227 LALSSN 232
           + L +N
Sbjct: 523 IWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 9e-17
 Identities = 57/278 (20%), Positives = 98/278 (35%), Gaps = 68/278 (24%)

Query: 190 VLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLH 249
           +  NLP  S   L L+ N +  +   SF      L  L LS   I  I + ++ +L  L 
Sbjct: 22  IPDNLP-FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 250 SLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 309
           +L L+ N + ++     S LS+L  L     N +++++     L +LK  ++N+  NL  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK--ELNVAHNL-- 135

Query: 310 IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVK 369
                       + S  +P  FS   L  L+   LDLS N   +I     + L  + L+ 
Sbjct: 136 ------------IQSFKLPEYFS--NLTNLE--HLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 370 INLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLE 429
           ++L                                               L  N ++ ++
Sbjct: 180 LSL----------------------------------------------DLSLNPMNFIQ 193

Query: 430 ASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
              F   R+  L L +N    +     +  L  L+V  
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  164 bits (418), Expect = 8e-44
 Identities = 90/432 (20%), Positives = 162/432 (37%), Gaps = 33/432 (7%)

Query: 26  CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVN 84
           C      +   C +     +P  L    + + L  N + ++  Y+   + EL+ LDLS  
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 85  KINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRD 144
           +I  +    ++  + L  L ++ N I +L+   F GL  L+ L      ++ +       
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH--QSLHYL 202
              L+ L ++ N I  F+  E FS+L +L  L L +N+I  +    L  L         L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 203 YLNENLIETVLDNSFPFTLTNLHTLALSSNIISF-INESSFVTLRTLHSLDLSNNNLS-- 259
            L+ N +  +   +  F    LH L L +N  S  + ++    L  L    L        
Sbjct: 183 DLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 260 -AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
             +     S L  L NL +     + +D      +        N + N+ S         
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-----NCLTNVSSFS------- 288

Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
              L+S++I      +     +   L+L    F    ++  KSL  L             
Sbjct: 289 ---LVSVTIERVKDFSYNFGWQ--HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-- 341

Query: 379 IDQRAFVDNIQLETVIINEN-MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLER 437
               + VD   LE + ++ N ++ K   S+   G T+LK + L  N +  + ++   LE+
Sbjct: 342 ----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 438 ISFLDLSDNPLH 449
           +  LD   + L 
Sbjct: 398 LEHLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (334), Expect = 8e-33
 Identities = 80/442 (18%), Positives = 141/442 (31%), Gaps = 81/442 (18%)

Query: 48  QLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINV-------LGSHNFEYQNKL 100
           Q+     ++ L  N ++ +       I L  L L  N  ++        G    E    +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN---KTAFRDTLHLELLILSFNN 157
           L    +   +    K   +GL  L   +     +          F    ++    L    
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 158 ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH-----------------QSLH 200
           I   +D   FS     + L+L N +    P   L +L                    SL 
Sbjct: 294 IERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350

Query: 201 YLYLNENLIETV-LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS 259
           +L L+ N +      +   F  T+L  L LS N +  +  S+F+ L  L  LD  ++NL 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLK 409

Query: 260 -AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
                     L  L+ LD+S  +     +  F  L SL+   + +  N          + 
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE--VLKMAGN------SFQENF 461

Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
            P + +           L  L    LDLS      +   AF SL SL+++ ++       
Sbjct: 462 LPDIFT----------ELRNLT--FLDLSQCQLEQLSPTAFNSLSSLQVLNMS------- 502

Query: 379 IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLE 436
                              + N   L +  ++   +L+ +    N +   +         
Sbjct: 503 -------------------HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 437 RISFLDLSDNPLHCDCNLLWLW 458
            ++FL+L+ N   C C      
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFL 565

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  129 bits (326), Expect = 9e-32
 Identities = 59/261 (22%), Positives = 101/261 (38%), Gaps = 6/261 (2%)

Query: 43  EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
            V     N   Q + L   +             L+ L  + NK     S       + L+
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFP--TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
           L+ +          +  G   LK LDLS+N +  ++   F     LE L    +N+    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412

Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
           +  +F SL++L  L + +       N + + L   SL  L +  N  +          L 
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTELR 470

Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
           NL  L LS   +  ++ ++F +L +L  L++S+NN  ++ T     L++L  LD S N+ 
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 283 SNIDSVAFKSLFSLKLVKINL 303
                   +   S  L  +NL
Sbjct: 531 MTSKKQELQHFPS-SLAFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (258), Expect = 3e-23
 Identities = 67/350 (19%), Positives = 123/350 (35%), Gaps = 57/350 (16%)

Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
            T          I       T +L+L   SFN + +      F S   L++L L   +I 
Sbjct: 10  ITYQCMELNFYKIPDNLPFSTKNLDL---SFNPLRHLGSYS-FFSFPELQVLDLSRCEIQ 65

Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244
            + +    +L H  L  L L  N I+++   +F   L++L  L      ++ +       
Sbjct: 66  TIEDGAYQSLSH--LSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGH 122

Query: 245 LRTLHSLDLSNNNLSAIP-TKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL 303
           L+TL  L++++N + +    +  S L+ L +LDLS N   +I     + L  + L+    
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN--- 179

Query: 304 IPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFS-NIDSVAFKSL 362
                     LSL L    ++   P AF    L  L      L  N  S N+     + L
Sbjct: 180 ----------LSLDLSLNPMNFIQPGAFKEIRLHKL-----TLRNNFDSLNVMKTCIQGL 224

Query: 363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKG 422
             L++ ++ L                        E  N   L          L +++++ 
Sbjct: 225 AGLEVHRLVL-----------------------GEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 423 NSLSHLEASH-------FPLERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
             L++L+            L  +S   L    +    +  + +    L++
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 5e-16
 Identities = 55/288 (19%), Positives = 99/288 (34%), Gaps = 72/288 (25%)

Query: 180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE 239
                 +P+N+  +        L L+ N +  +   SF      L  L LS   I  I +
Sbjct: 16  ELNFYKIPDNLPFST-----KNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIED 69

Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
            ++ +L  L +L L+ N + ++     S LS+L  L     N +++++     L +LK  
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-- 127

Query: 300 KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAF 359
           ++N+  NL              + S  +P  FS   L  L+   LDLS N   +I     
Sbjct: 128 ELNVAHNL--------------IQSFKLPEYFSN--LTNLE--HLDLSSNKIQSIYCTDL 169

Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
           + L  + L+ ++L                                               
Sbjct: 170 RVLHQMPLLNLSL----------------------------------------------D 183

Query: 420 LKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKS 467
           L  N ++ ++   F   R+  L L +N    +     +  L  L+V  
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  155 bits (394), Expect = 1e-42
 Identities = 71/353 (20%), Positives = 127/353 (35%), Gaps = 60/353 (16%)

Query: 20  AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
           A+CP  C C  + +   C+D GL+ VP +++P+                          L
Sbjct: 25  AMCPFGCHCHLRVV--QCSDLGLKAVPKEISPDTTL-----------------------L 59

Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           DL  N I+ L   +F+    L  L +  N+IS + +  F  L++L+ L +S N +  I  
Sbjct: 60  DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119

Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD--VPNNVLSNLPHQ 197
                   L  L +  N I       +FS L+++  +++  N + +          L   
Sbjct: 120 NLPS---SLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--- 172

Query: 198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN 257
            L+YL ++E  +  +  +        L+ L L  N I  I     +    L+ L L +N 
Sbjct: 173 KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLS 315
           +  I    LS L  L  L L  N  S + +     L  L++V +  N I  +   +    
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGV-NDFCP 286

Query: 316 LSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN--FSNIDSVAFKSLFSLK 366
           +         +                 + L  N   +  +    F+ +    
Sbjct: 287 VGFGVKRAYYN----------------GISLFNNPVPYWEVQPATFRCVTDRL 323

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  124 bits (313), Expect = 1e-31
 Identities = 66/338 (19%), Positives = 119/338 (35%), Gaps = 92/338 (27%)

Query: 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
            +   LDL  N IS + K  F+   HL  L+L  N I+   + + FS L+ L+ L +  N
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYISKN 112

Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII--SFINE 239
            ++++P N+ S+L       L +++N I  V    F   L N++ + +  N +  S    
Sbjct: 113 HLVEIPPNLPSSL-----VELRIHDNRIRKVPKGVFS-GLRNMNCIEMGGNPLENSGFEP 166

Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
            +F  L+ L+ L +S   L+ IP      L+    L L  N    I+         L   
Sbjct: 167 GAFDGLK-LNYLRISEAKLTGIPKDLPETLN---ELHLDHNKIQAIELEDLLRYSKLY-- 220

Query: 300 KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAF 359
                                                      RL L  N    I++ + 
Sbjct: 221 -------------------------------------------RLGLGHNQIRMIENGSL 237

Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
             L +L+  +++L                        +N  L ++P+        L+ V 
Sbjct: 238 SFLPTLR--ELHL------------------------DNNKLSRVPAG-LPDLKLLQVVY 270

Query: 420 LKGNSLSHLEASHFP-------LERISFLDLSDNPLHC 450
           L  N+++ +  + F            + + L +NP+  
Sbjct: 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 8e-23
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 28/183 (15%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           L  L +S  K+  +     E    L  L++ +N+I A+  +      +L  L L +N+I 
Sbjct: 174 LNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP 195
           +I   +      L  L L  N ++          LK L+++ L  N I  V  N    + 
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQVVYLHTNNITKVGVNDFCPV- 287

Query: 196 HQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF--INESSFVTLRTLHSLDL 253
                                F       + ++L +N + +  +  ++F  +    ++  
Sbjct: 288 --------------------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 254 SNN 256
            N 
Sbjct: 328 GNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 42  LEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKL 100
           L  +P  L   +  + L  N+I  +    L  Y +L  L L  N+I ++ + +  +   L
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243

Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDT------LHLELLILS 154
             L++  N++S +       LK L+ + L  N I+ +    F          +   + L 
Sbjct: 244 RELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 155 FNNITYFE-DSEIFSSLKSLRILKLDNNQ 182
            N + Y+E     F  +     ++  N +
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  145 bits (368), Expect = 7e-39
 Identities = 68/336 (20%), Positives = 120/336 (35%), Gaps = 69/336 (20%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
            +K+LDLS N+I+ I+ +  +  ++L+ L+L+ N I   E  + FSSL SL  L L  N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNY 111

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI-ISFINESS 241
           + ++ ++    L   SL +L L  N  +T+ + S    LT L  L + +    + I    
Sbjct: 112 LSNLSSSWFKPLS--SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI 301
           F  L  L  L++  ++L +   K L  +  + +L L       +  +      S++ +++
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKS 361
                                                      DL   +FS + +    S
Sbjct: 230 R----------------------------------------DTDLDTFHFSELSTGETNS 249

Query: 362 LFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK 421
           L                              V I +  +L Q+  KL    + L  +   
Sbjct: 250 LIKK----------------------FTFRNVKITDE-SLFQVM-KLLNQISGLLELEFS 285

Query: 422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLW 456
            N L  +    F  L  +  + L  NP  C C  + 
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 321

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  140 bits (354), Expect = 6e-37
 Identities = 57/298 (19%), Positives = 120/298 (40%), Gaps = 37/298 (12%)

Query: 3   YFLTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENR 62
           + +  + +I++L+K  ++   +   C D+      +   L  +P  L             
Sbjct: 6   WMVWVLGVIISLSK-EESSNQASLSC-DRNGICKGSSGSLNSIPSGLTEA---------- 53

Query: 63  ISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLK 122
                        ++SLDLS N+I  + + + +    L  L ++ N I+ + +D+F  L 
Sbjct: 54  -------------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN- 181
            L+ LDLSYN +S ++ + F+    L  L L  N      ++ +FS L  L+IL++ N  
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
               +     + L    L  L ++ + +++    S   ++ N+  L L       + E  
Sbjct: 161 TFTKIQRKDFAGLT--FLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIF 217

Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLS--------KLSALVNLDLSGNNFSNIDSVAFK 291
                ++  L+L + +L      +LS        K     N+ ++  +   +  +  +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 12/116 (10%)

Query: 54  QTIILRENRISNVHYTLSF-------YIELRSLDLSVNKINVLGS---HNFEYQNKLLNL 103
             +IL   +   +   +          +ELR  DL     + L +   ++   +    N+
Sbjct: 201 SHLILHMKQHILLL-EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
            I+   +  + K     +  L  L+ S N++  +    F     L+ + L  N   
Sbjct: 260 KITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  148 bits (375), Expect = 1e-37
 Identities = 70/411 (17%), Positives = 140/411 (34%), Gaps = 56/411 (13%)

Query: 75  ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK---------DTFKGLKELK 125
           +L  ++L                 +L +LNI+ N   + ++         D      +++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 126 TLDLSYNKISVI-NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
              + YN +       + +  + L LL    N + + E    F +   L  LKLD NQI 
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA---FGTNVKLTDLKLDYNQIE 608

Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFV- 243
           ++P +  +      +  L  + N ++ + +     ++  + ++  S N I     +    
Sbjct: 609 EIPEDFCAFTD--QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 244 ----TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
                     ++ LS N +   PT+  +  S +  + LS N  ++I   + K        
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN--- 723

Query: 300 KINLIPNLDSIDQPLS---LSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS 356
                  L +ID  L    L+        S+   F  T L  L    +D+S N FS+  +
Sbjct: 724 -YKNTYLLTTID--LRFNKLT--------SLSDDFRATTLPYLS--NMDVSYNCFSSFPT 770

Query: 357 VAFKSLFSLKLVKINLIPNLDSIDQR-------AFVDNIQLETVIINENMNLKQLPSKLF 409
               S    +L    +    D+   R              L  + I  N +++++  KL 
Sbjct: 771 QPLNSS---QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT 826

Query: 410 QGNTNLKSVSLKGNSLSHLEASHFP---LERISFLDLSDNPLHCDCNLLWL 457
                L  + +  N    ++ +         +  L          C+ L +
Sbjct: 827 ---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  146 bits (370), Expect = 4e-37
 Identities = 70/372 (18%), Positives = 141/372 (37%), Gaps = 45/372 (12%)

Query: 51  PEVQTIILRENRISNVHYTLSFYIE----------LRSLDLSVNKINVLG-SHNFEYQNK 99
           PE+Q++ +  NR  +     + +            ++   +  N +     S + +   K
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
           L  L+  +N++  L    F    +L  L L YN+I  I +     T  +E L  S N + 
Sbjct: 575 LGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ---SLHYLYLNENLIETVLDNS 216
           Y  +     S+  +  +    N+I     N+  ++      +   + L+ N I+      
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 217 FPFTLTNLHTLALSSNIISFINE-------SSFVTLRTLHSLDLSNNNLSAIP-TKQLSK 268
           F  T + + T+ LS+N+++ I E        ++     L ++DL  N L+++    + + 
Sbjct: 693 FA-TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751

Query: 269 LSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIP 328
           L  L N+D+S N FS+  +       S +L    +    D+    +    P  + +    
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLN---SSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-- 806

Query: 329 LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNI 388
              SL         +L +  N+   +D      L+ L +   N      SID  +    I
Sbjct: 807 ---SLI--------QLQIGSNDIRKVDEKLTPQLYILDIAD-N---PNISIDVTSVCPYI 851

Query: 389 QLETVIINENMN 400
           +    ++  +  
Sbjct: 852 EAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  135 bits (342), Expect = 2e-33
 Identities = 65/448 (14%), Positives = 138/448 (30%), Gaps = 42/448 (9%)

Query: 38  TDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQ 97
           T +G      +L P++        R+      L +   L   DL  + IN         +
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 98  NKLLNL-----NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI 152
           +  ++L         N I+ +SK   + L +L+ +  + +  +  N       +  E   
Sbjct: 420 DSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNI-----AVDWEDAN 473

Query: 153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212
             +      E+   +S+LK L  ++L N   +    + L +LP   L  L +  N   + 
Sbjct: 474 SDYAKQYENEELS-WSNLKDLTDVELYNCPNMTQLPDFLYDLP--ELQSLNIACNRGISA 530

Query: 213 LDNSFPFT--------LTNLHTLALSSNIISFI-NESSFVTLRTLHSLDLSNNNLSAIPT 263
                 +T           +    +  N +      +S   +  L  LD  +N +  +  
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590

Query: 264 KQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQPLSLSL 318
                   L +L L  N    I          ++ +     K+  IPN+ +      +  
Sbjct: 591 --FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 319 PPL----LLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKIN--- 371
                  + S    ++ S+     +    + LS N      +  F +   +  + ++   
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 372 ---LIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN-TNLKSVSLKGNSLSH 427
              +  N        + +   L T+ +  N  L  L           L ++ +  N  S 
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 428 LEASHFPLERISFLDLSDNPLHCDCNLL 455
                    ++    +          +L
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  125 bits (315), Expect = 4e-30
 Identities = 76/459 (16%), Positives = 139/459 (30%), Gaps = 65/459 (14%)

Query: 45  VPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL 103
           V +  N  V  + L            +    EL+ L    +   V G    + +      
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 104 NISYNEIS-ALSKDTFKGLKELKTLDLSYNKISVINKTAF-----RDTLHLELLILSFNN 157
               + I     K      + L   DL  + I+   +        R +L    +    N 
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 158 ITYFEDSEIFSSLKSLRILKLDNNQILDVP------------NNVLSNLPH-----QSLH 200
           IT+   +     L  L+I+   N+                       N        + L 
Sbjct: 437 ITFISKA--IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE---------SSFVTLRTLHSL 251
            + L      T L +   + L  L +L ++ N      +             T   +   
Sbjct: 495 DVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 252 DLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDS 309
            +  NNL   P    L K+  L  LD   N   ++++  F +   L    + L  N ++ 
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLT--DLKLDYNQIEE 609

Query: 310 IDQPLSLSLPPL-LLSLS------IPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL 362
           I +        +  L  S      IP  F+   +  +    +D S N   +       S+
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG--SVDFSYNKIGSEGRNISCSM 667

Query: 363 FSLK---LVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKL-------FQG 411
              K      + L  N +       F     + T+I++ N  +  +P          ++ 
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKN 726

Query: 412 NTNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPL 448
              L ++ L+ N L+ L        L  +S +D+S N  
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  117 bits (294), Expect = 2e-27
 Identities = 48/378 (12%), Positives = 118/378 (31%), Gaps = 31/378 (8%)

Query: 78  SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVI 137
           + +  ++        + +   ++  L+++         D    L ELK L    +  +V 
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 138 NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ 197
            +    + L  ++     + I            + L +  L  + I   P   +  +   
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKD 420

Query: 198 SLHYLYLNENLIETVLDNSFP---FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
           S   L   +    T            LT L  +  +++  ++ N +           +  
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSD 475

Query: 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL 314
                       S L  L +++L               L  L+   +N+  N        
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ--SLNIACN-------- 525

Query: 315 SLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI-DSVAFKSLFSLKLVKINLI 373
                  L +    LA        ++     +  NN      S + + +  L    ++ +
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQ--IFYMGYNNLEEFPASASLQKMVKLG--LLDCV 581

Query: 374 PN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL--EA 430
            N +  ++  AF  N++L  + ++ N  ++++P         ++ +    N L ++    
Sbjct: 582 HNKVRHLE--AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638

Query: 431 SHFPLERISFLDLSDNPL 448
           +   +  +  +D S N +
Sbjct: 639 NAKSVYVMGSVDFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (272), Expect = 8e-25
 Identities = 49/263 (18%), Positives = 90/263 (34%), Gaps = 21/263 (7%)

Query: 48  QLNPEVQTIILRENRISNVHYTLSFY--IELRSLDLSVNKINVLGSHNFEYQN-----KL 100
               +V+ +    N++  +    +      + S+D S NKI   G +     +       
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTL-------HLELLIL 153
             + +SYNEI     + F     + T+ LS N ++ I + + +           L  + L
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 154 SFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV--LSNLPHQSL-HYLYLNENLIE 210
            FN +T   D    ++L  L  + +  N     P      S L    + H      N I 
Sbjct: 736 RFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

Query: 211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLS 270
                    T  +L  L + SN I  ++E        L+ LD+++N   +I    +    
Sbjct: 796 RQWPTGI-TTCPSLIQLQIGSNDIRKVDEK---LTPQLYILDIADNPNISIDVTSVCPYI 851

Query: 271 ALVNLDLSGNNFSNIDSVAFKSL 293
                 L  +   +I       +
Sbjct: 852 EAGMYVLLYDKTQDIRGCDALGI 874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (360), Expect = 7e-37
 Identities = 56/381 (14%), Positives = 124/381 (32%), Gaps = 33/381 (8%)

Query: 75  ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
             +   ++ + +    +   +    +  L++S N +S +S        +L+ L+LS N +
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 135 SVINKTAFRDTLHLELLILSFNNITYFED--------------SEI-FSSLKSLRILKLD 179
                        L  L L+ N +                   S +  S  +  + + L 
Sbjct: 71  YET--LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128

Query: 180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE 239
           NN+I  + +          + YL L  N I+TV       +   L  L L  N I  +  
Sbjct: 129 NNKITMLRDLDEGCRS--RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
                   L +LDLS+N L+ +   +    + +  + L  N    I+  A +   +L+  
Sbjct: 187 QVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLE-- 240

Query: 300 KINLIPN-LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDR---LDLSGNNFSNID 355
             +L  N           S    + +++      LT     +C              ++ 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 356 SVAFKSLFSLKLVKINLIP---NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN 412
           +     L +LK  +  L+    +     +    +  +   +   +    + +  ++    
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE-QYRTVIDQVTLRK 359

Query: 413 TNLKSVSLKGNSLSHLEASHF 433
               ++  K  +L    ++  
Sbjct: 360 QAKITLEQKKKALDEQVSNGR 380

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  120 bits (303), Expect = 3e-29
 Identities = 51/408 (12%), Positives = 120/408 (29%), Gaps = 37/408 (9%)

Query: 43  EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
           E + ++    ++T+ L  N +      L     + +L  + N I+ +            N
Sbjct: 72  ETLDLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVSCSRG---QGKKN 124

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLH-LELLILSFNNITYF 161
           + ++ N+I+ L          ++ LDL  N+I  +N      +   LE L L +N I   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
           +          L+ L L +N++  +      +     + ++ L  N +  +++ +     
Sbjct: 185 KGQ---VVFAKLKTLDLSSNKLAFMGPE-FQSAA--GVTWISLRNNKL-VLIEKAL-RFS 236

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
            NL    L  N         F   +      ++   +  +  +   + +           
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
             ++ +     L +LK  +  L            LS              +         
Sbjct: 296 CEDLPAPFADRLIALKRKEHAL------------LSGQGSETERLECERENQARQ----- 338

Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
             +D     +  +         +     +      LD         + +L+  +      
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKI--TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
           ++   +   Q    L    +K     ++E        I   D+  +  
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 2e-28
 Identities = 55/357 (15%), Positives = 112/357 (31%), Gaps = 34/357 (9%)

Query: 115 KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
            +  +     K   ++ + +     +  +   +++ L LS N ++    ++  +    L 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLE 61

Query: 175 ILKLDNNQI--------------LDVPNNVLSNLPH-QSLHYLYLNENLIETVLDNSFPF 219
           +L L +N +              LD+ NN +  L    S+  L+   N I  V  +    
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG-- 119

Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL-SKLSALVNLDLS 278
                  + L++N I+ + +        +  LDL  N +  +   +L +    L +L+L 
Sbjct: 120 --QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 279 GNNFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLS----LSIPLAFSL 333
            N   ++        L +L L   N +  +    Q  +  +  + L     + I  A   
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAA-GVTWISLRNNKLVLIEKALR- 234

Query: 334 TPLGTLKCDRLDLSGNNFS-NIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLET 392
                L+    DL GN F        F     ++ V    +  L   ++           
Sbjct: 235 -FSQNLE--HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 393 VIINENMNLKQLPSKL-FQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
                         +L          +S +G+    LE       R   +D      
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (259), Expect = 1e-23
 Identities = 45/311 (14%), Positives = 90/311 (28%), Gaps = 33/311 (10%)

Query: 42  LEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQ-NK 99
           +  V        + I L  N+I+ +          ++ LDL +N+I+ +         + 
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
           L +LN+ YN I  +         +LKTLDLS NK++ +    F+    +  + L  N + 
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV 227

Query: 160 YFEDSEIFSSLKSLRILKLDNNQI---------------LDVPNNVLSNLPH------QS 198
             E +      ++L    L  N                   V    +  L          
Sbjct: 228 LIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 199 LHYLYLNENLIETV----LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
               +      E +     D            L+   +    +             +D  
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE-NQARQREIDAL 344

Query: 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL 314
                 +  +   +  A + L+          S   ++   L       +  ++      
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

Query: 315 SLSLPPLLLSL 325
             S   LL ++
Sbjct: 405 EQSPLQLLRAI 415

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 13/169 (7%), Positives = 38/169 (22%), Gaps = 1/169 (0%)

Query: 42  LEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLL 101
            + +      E   +  + +    +          R +D    +   +       +   +
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
            L      +     +  +   EL            + + A  +   L+LL          
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRYEEM 422

Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210
              +      ++R   +  ++   +               L L      
Sbjct: 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  133 bits (337), Expect = 3e-35
 Identities = 59/256 (23%), Positives = 103/256 (40%), Gaps = 25/256 (9%)

Query: 26  CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSLDLSVN 84
           C      +   C +     +P  L    + + L  N + ++       + EL+ LDLS  
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 85  KINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRD 144
           +I  +    ++  + L  L ++ N I +L+   F GL  L+ L      ++ +       
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYL 204
              L+ L ++ N I  F+  E FS+L +L  L L +N+I  +    L  L    +  L L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH--QMPLLNL 180

Query: 205 NENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTK 264
                                +L LS N ++FI   +F  +R L  L L  N L ++P  
Sbjct: 181 ---------------------SLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDG 218

Query: 265 QLSKLSALVNLDLSGN 280
              +L++L  + L  N
Sbjct: 219 IFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  111 bits (279), Expect = 2e-27
 Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 53/272 (19%)

Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251
            NLP  S   L L+ N +  +   SF F+   L  L LS   I  I + ++ +L  L +L
Sbjct: 24  DNLPF-STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81

Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
            L+ N + ++     S LS+L  L     N +++++     L +LK  ++N+  N     
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK--ELNVAHN----- 134

Query: 312 QPLSLSLPPLLLSLSIPLAFS-LTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370
                    L+ S  +P  FS LT L     + LDLS N   +I     + L  + L+ +
Sbjct: 135 ---------LIQSFKLPEYFSNLTNL-----EHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 371 NL---IPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH 427
           +L   +  ++ I   AF   I+L+ + ++ N  LK +P  +F   T+L+           
Sbjct: 181 SLDLSLNPMNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIFDRLTSLQ----------- 227

Query: 428 LEASHFPLERISFLDLSDNPLHCDCN-LLWLW 458
                        + L  NP  C C  + +L 
Sbjct: 228 ------------KIWLHTNPWDCSCPRIDYLS 247

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  135 bits (341), Expect = 3e-35
 Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 6/190 (3%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFY--IELRSL 79
           CP+ C C       SC+   L  VP  L      + L  N +S +    +      L SL
Sbjct: 12  CPANCLCASN--ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSL 69

Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
            LS N +N + S  F     L  L++S N +  L +  F  L+ L+ L L  N I V+++
Sbjct: 70  LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129

Query: 140 TAFRDTLHLELLILSFNNITYFEDS--EIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ 197
            AF D   L+ L LS N I+ F     +  + L  L +L L +N++  +P   L  LP  
Sbjct: 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189

Query: 198 SLHYLYLNEN 207
             + LYL+ N
Sbjct: 190 VKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 97.2 bits (242), Expect = 4e-22
 Identities = 61/267 (22%), Positives = 87/267 (32%), Gaps = 90/267 (33%)

Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251
            +LP      L L+ N +  +     P  LTNLH+L LS N ++FI+  +FV +  L  L
Sbjct: 35  QSLPS-YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93

Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
           DLS+N+L  +     S L AL  L L  N+   +D  AF+ +  L+              
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ-------------- 139

Query: 312 QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKIN 371
                                          +L LS N  S       K    L      
Sbjct: 140 -------------------------------KLYLSQNQISRFPVELIKDGNKLP----- 163

Query: 372 LIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS 431
                            +L  + ++ N  LK+LP    Q                     
Sbjct: 164 -----------------KLMLLDLSSN-KLKKLPLTDLQKLPAWVKNG------------ 193

Query: 432 HFPLERISFLDLSDNPLHCDCNLLWLW 458
                    L L +NPL CDC L  L+
Sbjct: 194 ---------LYLHNNPLECDCKLYQLF 211

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  129 bits (326), Expect = 3e-34
 Identities = 48/261 (18%), Positives = 104/261 (39%), Gaps = 33/261 (12%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
               C+C  ++ +   T   ++ +P                        S     ++L L
Sbjct: 4   SSPPCECHQEE-DFRVTCKDIQRIP------------------------SLPPSTQTLKL 38

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYN-EISALSKDTFKGLKELKTLDLSYNK-ISVINK 139
               +  + SH F     +  + +S +  +  L   +F  L ++  +++   + ++ I+ 
Sbjct: 39  IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98

Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL-DNNQILDVPNNVLSNLPHQS 198
            A ++   L+ L +    +  F D     S     IL++ DN  +  +P N    L ++ 
Sbjct: 99  DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE- 157

Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN-IISFINESSFVTLRT-LHSLDLSNN 256
              L L  N   +V   +F    T L  + L+ N  ++ I++ +F  + +    LD+S  
Sbjct: 158 TLTLKLYNNGFTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

Query: 257 NLSAIPTKQLSKLSALVNLDL 277
           +++A+P+K L  L  L+  + 
Sbjct: 216 SVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  113 bits (285), Expect = 1e-28
 Identities = 32/200 (16%), Positives = 73/200 (36%), Gaps = 6/200 (3%)

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYN-KISVINKTAFRDTLHLELLILSFNNITYF 161
           L +    +  +    F  L  +  + +S +  +  +   +F +   +  + +       +
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL-IETVLDNSFPFT 220
            D +    L  L+ L + N  +   P+             L + +N  + ++  N+F   
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST-DIFFILEITDNPYMTSIPVNAFQGL 154

Query: 221 LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN-LSAIPTKQLSKL-SALVNLDLS 278
                TL L +N  + +   +F   + L ++ L+ N  L+ I       + S    LD+S
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 279 GNNFSNIDSVAFKSLFSLKL 298
             + + + S   + L  L  
Sbjct: 214 QTSVTALPSKGLEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 99.3 bits (248), Expect = 1e-23
 Identities = 41/249 (16%), Positives = 88/249 (35%), Gaps = 51/249 (20%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
             +TL L    +  I   AF +  ++  + +S +      +S  F +L  +  +++ N +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 183 IL-DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN-IISFINES 240
            L  +  + L  LP   L +L +    ++   D +  ++      L ++ N  ++ I  +
Sbjct: 92  NLTYIDPDALKELP--LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 241 SFVTLRT-LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF-SNIDSVAFKSLFSLKL 298
           +F  L     +L L NN  +++     +  + L  + L+ N + + ID  AF  ++S   
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGP- 207

Query: 299 VKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVA 358
                                                        LD+S  + + + S  
Sbjct: 208 -------------------------------------------SLLDVSQTSVTALPSKG 224

Query: 359 FKSLFSLKL 367
            + L  L  
Sbjct: 225 LEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 87.8 bits (218), Expect = 9e-20
 Identities = 49/248 (19%), Positives = 88/248 (35%), Gaps = 30/248 (12%)

Query: 180 NNQILDVPNNVLSNLPH--QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI-ISF 236
             +   V    +  +P    S   L L E  + T+  ++F   L N+  + +S ++ +  
Sbjct: 12  QEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQ 70

Query: 237 INESSFVTLRTLHSLDLSNNN-LSAIPTKQLSKLSALVNLDLSGNNFSNI-DSVAFKSLF 294
           +   SF  L  +  +++ N   L+ I    L +L  L  L +         D     S  
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130

Query: 295 SLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
              +++I   P + SI       L    L+L                    L  N F+++
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTL-------------------KLYNNGFTSV 171

Query: 355 DSVAFKSLFSLKLVKINLIPN--LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGN 412
              AF      KL  + L  N  L  ID+ AF       +++     ++  LPSK  +  
Sbjct: 172 QGYAFNGT---KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228

Query: 413 TNLKSVSL 420
             L + + 
Sbjct: 229 KELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 41/200 (20%), Positives = 81/200 (40%), Gaps = 15/200 (7%)

Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN-FSNIDSVAFKSLFSLKLVKINL 303
             +  +L L   +L  IP+   S L  +  + +S +     ++S +F +L  +  ++I  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 304 IPNLDSIDQPLSLSLPPL-LLSLS------IPLAFSLTPLGTLKCDRLDLSGNNF-SNID 355
             NL  ID      LP L  L +        P    +          L+++ N + ++I 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF--ILEITDNPYMTSIP 147

Query: 356 SVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQG-NT 413
             AF+ L +   + + L  N   S+   AF +  +L+ V +N+N  L  +    F G  +
Sbjct: 148 VNAFQGLCNE-TLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 414 NLKSVSLKGNSLSHLEASHF 433
               + +   S++ L +   
Sbjct: 206 GPSLLDVSQTSVTALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK 402
            L L   +   I S AF +L ++  + +++   L  ++  +F +  ++  + I    NL 
Sbjct: 35  TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 403 QLPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNPL 448
            +     +    LK + +    L            +    L+++DNP 
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  130 bits (328), Expect = 9e-34
 Identities = 51/298 (17%), Positives = 99/298 (33%), Gaps = 26/298 (8%)

Query: 75  ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
             +   ++ + +    +   +    +  L++S N +S +S        +L+ L+LS N +
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 135 SVINKTAFRDTLHLELLILSFNNITYFED--------------SEI-FSSLKSLRILKLD 179
                        L  L L+ N +                   S +  S  +  + + L 
Sbjct: 71  YET--LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128

Query: 180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE 239
           NN+I  + +          + YL L  N I+TV       +   L  L L  N I  +  
Sbjct: 129 NNKITMLRDLDEGCRS--RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV 299
                   L +LDLS+N L+ +   +    + +  + L  N    I+  A +   +L+  
Sbjct: 187 QVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLE-- 240

Query: 300 KINLIPN-LDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS 356
             +L  N           S    + +++      LT     +C    L        + 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (296), Expect = 2e-29
 Identities = 51/350 (14%), Positives = 115/350 (32%), Gaps = 87/350 (24%)

Query: 115 KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
            +  +     K   ++ + +     +  +   +++ L LS N ++    ++  +    L 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLE 61

Query: 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII 234
           +L L +N + +  +  L +L   +L  L LN N ++ +          ++ TL  ++N I
Sbjct: 62  LLNLSSNVLYETLD--LESLS--TLRTLDLNNNYVQEL------LVGPSIETLHAANNNI 111

Query: 235 SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLF 294
           S ++ S     +   ++ L+NN ++ +        S +  LDL  N    ++        
Sbjct: 112 SRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---- 164

Query: 295 SLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
                       L+                                   L+L  N   ++
Sbjct: 165 ------AASSDTLEH----------------------------------LNLQYNFIYDV 184

Query: 355 DSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTN 414
                 +                           +L+T+ ++ N  L  +  + FQ    
Sbjct: 185 KGQVVFA---------------------------KLKTLDLSSN-KLAFMGPE-FQSAAG 215

Query: 415 LKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQ 464
           +  +SL+ N L  +E +    + +   DL  N  HC     +     ++Q
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  128 bits (323), Expect = 8e-33
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 6/212 (2%)

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKI-SVINKTAFRDTLHL-ELLILSFNNITY 160
           L     ++  + K  F G  +L+ +++S N +  VI    F +   L E+ I   NN+ Y
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 161 FEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL-IETVLDNSFPF 219
               E F +L +L+ L + N  I  +P+    +        L + +N+ I T+  NSF  
Sbjct: 95  IN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--QKVLLDIQDNINIHTIERNSFVG 151

Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
                  L L+ N I  I+ S+F   +        NNNL  +P       S  V LD+S 
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 280 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
               ++ S   ++L  L+      +  L +++
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 243

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  106 bits (266), Expect = 3e-25
 Identities = 43/265 (16%), Positives = 84/265 (31%), Gaps = 40/265 (15%)

Query: 22  CPSR-CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSL 79
           C  R C C ++     C ++ +  +P  L      +     ++  +     S + +L  +
Sbjct: 2   CHHRICHCSNRVF--LCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKI 59

Query: 80  DLS--------------------------VNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
           ++S                           N +  +    F+    L  L IS   I  L
Sbjct: 60  EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119

Query: 114 SKDTFKGLKELKTLDLSYN-KISVINKTAFRD-TLHLELLILSFNNITYFEDSEIFSSLK 171
                    +   LD+  N  I  I + +F   +    +L L+ N I    +S  F+  +
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQ 178

Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
              +   DNN + ++PN+V           L ++   I ++        L  L   +  +
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASG--PVILDISRTRIHSLPSYGLE-NLKKLRARSTYN 235

Query: 232 NIISFINESSFVTLRTLHSLDLSNN 256
                    +   L  L    L+  
Sbjct: 236 L----KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 99.1 bits (247), Expect = 9e-23
 Identities = 51/315 (16%), Positives = 101/315 (32%), Gaps = 75/315 (23%)

Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
           S R+     +++ ++P+++  N        L      +  +   +F     +L  + +S 
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRNA-----IELRFVLTKLRVIQKGAFS-GFGDLEKIEISQ 63

Query: 232 N-IISFINESSFVTLRTLHSLDLSN-NNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA 289
           N ++  I    F  L  LH + +   NNL  I  +    L  L  L +S     ++  V 
Sbjct: 64  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 290 FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGN 349
                   L+ I    N+ +I++   + L    + L                    L+ N
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL-------------------WLNKN 164

Query: 350 NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLF 409
               I + AF                             QL+ + +++N NL++LP+ +F
Sbjct: 165 GIQEIHNSAFNGT--------------------------QLDELNLSDNNNLEELPNDVF 198

Query: 410 QGNTNLKSVSLKGNSLSHLEASHF---------------------PLERISFLDLSDNPL 448
            G +    + +    +  L +                         L  +    L+  P 
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT-YPS 257

Query: 449 HCDCNLLWLWILVQL 463
           HC     W   + +L
Sbjct: 258 HCCAFANWRRQISEL 272

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  122 bits (309), Expect = 1e-31
 Identities = 69/244 (28%), Positives = 101/244 (41%), Gaps = 31/244 (12%)

Query: 13  ALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF 72
           AL K         C C + K    C+   L  +P                 SN+      
Sbjct: 3   ALCKK----DGGVCSCNNNKNSVDCSSKKLTAIP-----------------SNIPAD--- 38

Query: 73  YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
               + LDL  NK++ L S  F    KL  L ++ N++  L    FK LK L+TL ++ N
Sbjct: 39  ---TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
           K+  +    F   ++L  L L  N +       +F SL  L  L L  N++  +P  V  
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLD 252
            L   SL  L L  N ++ V + +F   LT L TL L +N +  + E +F +L  L  L 
Sbjct: 155 KLT--SLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 253 LSNN 256
           L  N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  109 bits (274), Expect = 6e-27
 Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 4/179 (2%)

Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
            K LDL  NK+S +   AF     L LL L+ N +     + IF  LK+L  L + +N++
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKL 97

Query: 184 LDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFV 243
             +P  V   L   +L  L L+ N ++++    F  +LT L  L+L  N +  + +  F 
Sbjct: 98  QALPIGVFDQLV--NLAELRLDRNQLKSLPPRVFD-SLTKLTYLSLGYNELQSLPKGVFD 154

Query: 244 TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
            L +L  L L NN L  +P     KL+ L  L L  N    +   AF SL  LK++++ 
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 54/240 (22%), Positives = 87/240 (36%), Gaps = 51/240 (21%)

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
            +   L L SN +S +   +F  L  L  L L++N L  +P     +L  L  L ++ N 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
              +    F  L +L                                             
Sbjct: 97  LQALPIGVFDQLVNLA-------------------------------------------- 112

Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
             L L  N   ++    F SL  L    ++L  N L S+ +  F     L+ + +  N  
Sbjct: 113 -ELRLDRNQLKSLPPRVFDSLTKLT--YLSLGYNELQSLPKGVFDKLTSLKELRLYNN-Q 168

Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLW 458
           LK++P   F   T LK++ L  N L  +    F  LE++  L L +NP  C CN ++++ 
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMA 228

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (316), Expect = 2e-30
 Identities = 58/313 (18%), Positives = 114/313 (36%), Gaps = 34/313 (10%)

Query: 70  LSFYIELRSLDLSVNKINVLG-SHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD 128
                +++ + +  N +       + +   KL  L   YN++       F    +L +L+
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLN 359

Query: 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN 188
           L+YN+I+ I       T  +E L  + N + Y  +     S+  +  +    N+I  V  
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 189 NVLSNLPH-----QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE---- 239
                L        ++  + L+ N I       F  T + L ++ L  N+++ I +    
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELF-STGSPLSSINLMGNMLTEIPKNSLK 478

Query: 240 ---SSFVTLRTLHSLDLSNNNLSAIPTK-QLSKLSALVNLDLSGNNFSNIDSVAFKSLFS 295
               +F     L S+DL  N L+ +    + + L  LV +DLS N+FS   +       +
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT----QPLN 534

Query: 296 L-KLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
              L    +    D+         P  +         SLT        +L +  N+   +
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCP-----SLT--------QLQIGSNDIRKV 581

Query: 355 DSVAFKSLFSLKL 367
           +     ++  L +
Sbjct: 582 NEKITPNISVLDI 594

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (253), Expect = 1e-22
 Identities = 72/429 (16%), Positives = 131/429 (30%), Gaps = 64/429 (14%)

Query: 75  ELRSLDLSVNKINVLGSHNF------EYQNKLLNLNISYNEISALSKDTFKGLKELKTLD 128
           EL  L L  +   V               ++       + + + +  D  +   +L    
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP- 187
           ++ +      K + R TL    +    NNIT+   +     L  LR   + N+  +    
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNSPFVAENI 223

Query: 188 -----------NNVLSNLPH-----QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
                                    + L  + +      T L       L  +  + ++ 
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVAC 282

Query: 232 N--------IISFINESSFVTLRTLHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNF 282
           N           +   +       +  + +  NNL   P    L K+  L  L+   N  
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 283 SNIDSVAFKSLFSL-KLVKINLIPN-LDSIDQPLSLSLPPLL-LSLS------IPLAFSL 333
                    +  S  KL  +NL  N +  I          +  LS +      IP  F  
Sbjct: 343 EGK----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 334 TPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS-----LKLVKINLIPN-LDSIDQRAFVDN 387
             +  +    +D S N   ++D   F  L       + +  INL  N +    +  F   
Sbjct: 399 KSVSVMS--AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 388 IQLETVIINENM------NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP--LERIS 439
             L ++ +  NM      N  +  ++ F+    L S+ L+ N L+ L        L  + 
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 440 FLDLSDNPL 448
            +DLS N  
Sbjct: 517 GIDLSYNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.8 bits (218), Expect = 3e-18
 Identities = 48/346 (13%), Positives = 105/346 (30%), Gaps = 33/346 (9%)

Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI 183
           +  L L     S     A      LE+L L  +     E       + +    +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 184 LDVPNNVLSNLPHQ---SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINES 240
           +      +   P +    L    +N +  +  +  S          +   SN I+F+   
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNITFV-SK 200

Query: 241 SFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVK 300
           + + L  L    + N+   A    +  +                 D+   K L  +++  
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN--LKDLTDVEVYN 258

Query: 301 INLI----------PNLDSIDQPLS----LSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346
              +          P +  I+  ++    +S   L                 ++   + +
Sbjct: 259 CPNLTKLPTFLKALPEMQLIN--VACNRGISGEQLKDDWQALA--DAPVGEKIQ--IIYI 312

Query: 347 SGNNFSNIDSVAFKSLFSL-KLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLP 405
             NN          SL  + KL  +  + N       AF   I+L ++ +  N  + ++P
Sbjct: 313 GYNNLKTFP--VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIP 369

Query: 406 SKLFQGNTNLKSVSLKGNSLSHLEASHFP--LERISFLDLSDNPLH 449
           +        ++++S   N L ++        +  +S +D S N + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 36/296 (12%), Positives = 82/296 (27%), Gaps = 19/296 (6%)

Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHT 226
            +S   +  L L+         + +  L    L  L L  +  +       P  ++   +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQL--TELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 227 LALSSNII-----SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
                 +      +F++         L    ++++       K          +    NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
            + +   A   L  L+   +   P +         +                  L  L  
Sbjct: 195 ITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT- 252

Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLV-----KINLIPNLDSIDQR--AFVDNIQLETVI 394
             +++             K+L  ++L+     +      L    Q         +++ + 
Sbjct: 253 -DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 395 INENMNLKQLPSKLFQGN-TNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH 449
           I  N NLK  P +        L  +    N L     +     +++ L+L+ N + 
Sbjct: 312 IGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 11/149 (7%)

Query: 54  QTIILRENRISNVHYTLSFY--IELRSLDLSVNKI-----NVLGSHNFEYQNKLLNLNIS 106
            +I LR N+++ +           L  +DLS N         L S   +        +  
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEI 166
            N       +       L  L +  N I  +N+       ++ +L +  N     + S +
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDIKDNPNISIDLSYV 607

Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLP 195
              ++   +  L  ++  D+      ++ 
Sbjct: 608 CPYIE-AGMYMLFYDKTQDIRGCDALDIK 635

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (298), Expect = 2e-29
 Identities = 76/398 (19%), Positives = 156/398 (39%), Gaps = 58/398 (14%)

Query: 54  QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
            T+      I+ +    +   E     L    +  +     E    +  L ++  +++++
Sbjct: 3   ATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASI 59

Query: 114 SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL 173
                + L  L+ L+L+ N+I+ I  +   + + L  L +  N IT         +L +L
Sbjct: 60  QG--IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISA---LQNLTNL 112

Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
           R L L+ + I D+    L+NL    ++ L L  N   + L       +T L+ L ++ + 
Sbjct: 113 RELYLNEDNISDISP--LANLT--KMYSLNLGANHNLSDLSPLS--NMTGLNYLTVTESK 166

Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL 293
           +  +  +    L  L+SL L+ N +  I    L+ L++L       N  ++I      ++
Sbjct: 167 VKDV--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM 220

Query: 294 FSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNF 351
             L  +KI  N I +L  +     L+                          L++  N  
Sbjct: 221 TRLNSLKIGNNKITDLSPLANLSQLT-------------------------WLEIGTNQI 255

Query: 352 SNIDSVA-FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ 410
           S+I++V     L  L +   N I ++  ++        QL ++ +N N  L     ++  
Sbjct: 256 SDINAVKDLTKLKMLNVGS-NQISDISVLNN-----LSQLNSLFLNNN-QLGNEDMEVIG 308

Query: 411 GNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
           G TNL ++ L  N ++ +      L ++   D ++  +
Sbjct: 309 GLTNLTTLFLSQNHITDIRPLA-SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (290), Expect = 2e-28
 Identities = 78/387 (20%), Positives = 159/387 (41%), Gaps = 57/387 (14%)

Query: 43  EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
           ++ P     E    +L++  +++V  T      +  L ++  K+  +     EY   L  
Sbjct: 14  QIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASI--QGIEYLTNLEY 70

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
           LN++ N+I+ +S      L +L  L +  NKI+ I  +A ++  +L  L L+ +NI+   
Sbjct: 71  LNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDIS 126

Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
                ++L  +  L L  N  L   +  LSN+    L+YL + E+ ++ V   +    LT
Sbjct: 127 P---LANLTKMYSLNLGANHNLSDLSP-LSNMT--GLNYLTVTESKVKDVTPIA---NLT 177

Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
           +L++L+L+ N I  I  S   +L +LH      N ++ I    ++ ++ L +L +  N  
Sbjct: 178 DLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233

Query: 283 SNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLK 340
           +++      +L  L  ++I  N I +++++     L                        
Sbjct: 234 TDLS--PLANLSQLTWLEIGTNQISDINAVKDLTKLK----------------------- 268

Query: 341 CDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENM 399
              L++  N  S+I      +L  L    + L  N L + D         L T+ +++N 
Sbjct: 269 --MLNVGSNQISDIS--VLNNLSQLN--SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN- 321

Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLS 426
           ++  +        + + S       + 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (274), Expect = 3e-26
 Identities = 74/354 (20%), Positives = 141/354 (39%), Gaps = 37/354 (10%)

Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
              L      I+ +  D    L E     L    ++ +      +   +  L+++   + 
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVA 57

Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
             +       L +L  L L+ NQI D+    LSNL    L  LY+  N I  +   S   
Sbjct: 58  SIQG---IEYLTNLEYLNLNGNQITDISP--LSNLV--KLTNLYIGTNKITDI---SALQ 107

Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
            LTNL  L L+ + IS I  S    L  ++SL+L  N+  +     LS ++ L  L ++ 
Sbjct: 108 NLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTE 164

Query: 280 NNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGT 338
           +   ++  +A    L+SL L   N I ++  +    SL       +  +     +TP+  
Sbjct: 165 SKVKDVTPIANLTDLYSLSLNY-NQIEDISPLASLTSLH----YFTAYVNQITDITPVAN 219

Query: 339 LKC-DRLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQRAFVDNIQLETVII 395
           +   + L +  N  +++      +L  L  ++I  N I +++++         +L+ + +
Sbjct: 220 MTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDINAVKD-----LTKLKMLNV 272

Query: 396 NENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL 448
             N  +  +        + L S+ L  N L + +      L  ++ L LS N +
Sbjct: 273 GSN-QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  119 bits (301), Expect = 7e-29
 Identities = 70/394 (17%), Positives = 134/394 (34%), Gaps = 15/394 (3%)

Query: 75  ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
           +   L++S N I+ L + +    +KL  L IS+N I  L    FK  +EL+ LDLS+NK+
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 135 SVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL 194
             I+      T++L+ L LSFN        + F ++  L+ L L    +       +++L
Sbjct: 82  VKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 195 PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS 254
               +  +       +   +    F   +LH +  ++    FI + S  T+  L   ++ 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL 314
                   +  LS L+ L       N   N     + S   + L  +            +
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI-LQLVWHTTVWYFSISNV 257

Query: 315 SLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 374
            L              F  +           +  + F    S  ++   ++ +    +  
Sbjct: 258 KLQGQLDFRD------FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS- 310

Query: 375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF- 433
               +             +  + N  L     +     T L+++ L+ N L  L      
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 434 --PLERISFLDLSDNPLHCDCNLLWLWILVQLQV 465
              ++ +  LD+S N +  D           L  
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (253), Expect = 7e-23
 Identities = 57/350 (16%), Positives = 115/350 (32%), Gaps = 33/350 (9%)

Query: 122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
           ++   L++S N IS +  +       L +LI+S N I Y +   +F   + L  L L +N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHN 79

Query: 182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
           +++ +  +   N     L +L L+ N  + +        ++ L  L LS+  +   +   
Sbjct: 80  KLVKISCHPTVN-----LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 242 FVTLRTLH-SLDLSNNNLSAIPTKQLSKLSALVN--LDLSGNNFSNIDSVAFKSLFSLKL 298
              L      L L          + L   +      +  +   F  I  V+ K++ +L+L
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 299 VKINLIPNLDSIDQPLSLSLPPLLLS-----------------LSIPLAFSLTPLGTLKC 341
             I  +   +     LS+                         + I      T +     
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKL--VKINLIPNLDSIDQRAFVDNIQLETVIINENM 399
             + L G         +  SL +L +  V  ++     S     F  N+ ++   ++   
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVS--- 310

Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL 448
             + +        +    +    N L+     +   L  +  L L  N L
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =   99 bits (249), Expect = 2e-22
 Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 4/225 (1%)

Query: 73  YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
           Y  + ++ L          ++      L    +  +         ++    +   + + +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
              +++            L  S N +T     E    L  L  L L  NQ+ ++      
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTV-FENCGHLTELETLILQMNQLKELSKIAEM 369

Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLD 252
               +SL  L +++N +             +L +L +SSNI++            +  LD
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427

Query: 253 LSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
           L +N + +IP KQ+ KL AL  L+++ N   ++    F  L SL+
Sbjct: 428 LHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.9 bits (241), Expect = 2e-21
 Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 8/186 (4%)

Query: 75  ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
            +   + +V+   ++        +  L+L+ S N ++    +    L EL+TL L  N++
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 135 SVINKTA--FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
             ++K A        L+ L +S N+++Y E     S  KSL  L + +N + D     L 
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLD 252
                 +  L L+ N I+++        L  L  L ++SN +  + +  F  L +L  + 
Sbjct: 421 ----PRIKVLDLHSNKIKSIPKQVVK--LEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474

Query: 253 LSNNNL 258
           L  N  
Sbjct: 475 LHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.7 bits (238), Expect = 5e-21
 Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 6/209 (2%)

Query: 75  ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
            L    +  +      S+ +E  + +   N + +    +       +     LD S N +
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 135 SVINKTAFRDTLHLELLILSFNNITYFED-SEIFSSLKSLRILKLDNNQILDVPNNVLSN 193
           +            LE LIL  N +      +E+ + +KSL+ L +  N +         +
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 194 LPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL 253
              +SL  L ++ N++   +    P  +  L    L SN I  I +     L  L  L++
Sbjct: 397 WT-KSLLSLNMSSNILTDTIFRCLPPRIKVLD---LHSNKIKSIPKQVV-KLEALQELNV 451

Query: 254 SNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
           ++N L ++P     +L++L  + L  N +
Sbjct: 452 ASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.2 bits (216), Expect = 3e-18
 Identities = 66/409 (16%), Positives = 144/409 (35%), Gaps = 44/409 (10%)

Query: 76  LRSLDLSVNKI------NVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL 129
           L+ L LS   +       +   +  +    L        +   L     + L  +   + 
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN- 188
            ++ I  ++     +     +  +  +N   +  S +     + ++  L  N I    N 
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 189 --NVLSNLPHQSLHYLYLNEN-LIETVLDNSFPFTLTNLHTLA---LSSNIISFINESSF 242
              +L  + H ++ Y  ++   L   +    F ++ T+L  L+   + S++  F     +
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
                ++  + + +    +     SK+S  ++LD S N  ++        L  L+     
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE----- 351

Query: 303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNID-SVAFKS 361
                       +L L    L     +A   T + +L+  +LD+S N+ S  +       
Sbjct: 352 ------------TLILQMNQLKELSKIAEMTTQMKSLQ--QLDISQNSVSYDEKKGDCSW 397

Query: 362 LFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420
             SL    +N+  N L     R       ++ + ++ N  +K +P ++ +    L+ +++
Sbjct: 398 TKSLL--SLNMSSNILTDTIFRCLPPR--IKVLDLHSN-KIKSIPKQVVKL-EALQELNV 451

Query: 421 KGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNL---LWLWILVQLQV 465
             N L  +    F  L  +  + L  NP  C C     L  W+    Q 
Sbjct: 452 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK 500

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 47/327 (14%), Positives = 92/327 (28%), Gaps = 29/327 (8%)

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
                L +S N IS +  S  ++L  L  L +S+N +  +          L  LDLS N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
              I      +L  L L          S +   +L +     ++S      L        
Sbjct: 81  LVKISCHPTVNLKHLDL----------SFNAFDALPICKEFGNMS-----QLK------- 118

Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVII-NENMN 400
             L LS  +      +    L   K++ +      +  D     D       I+   N  
Sbjct: 119 -FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWI 459
              +     +   NL+  ++K     +  +     L ++       N    +    W   
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 460 LVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPD 519
           +  LQ+            +++          +       +K      +V +      P  
Sbjct: 238 IRILQLVWHTTVWYF--SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS 293

Query: 520 IKGLEVKAVPENSVHCESNTMLYVLSF 546
                   +   +       M+++L  
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCP 320

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  119 bits (299), Expect = 2e-28
 Identities = 70/382 (18%), Positives = 134/382 (35%), Gaps = 28/382 (7%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
            ++L LS N I+ L   +  + ++L  L +S+N I +L    F   ++L+ LD+S+N++ 
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLP 195
            I+         L  L LSFN+       + F +L  L  L L   +   +    +++L 
Sbjct: 114 NISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL- 169

Query: 196 HQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN 255
           H S   L L    I+     S     T +  L    N  S  +    +++  L  L LSN
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN--SLFSVQVNMSVNALGHLQLSN 227

Query: 256 NNLSAIPTKQLS-------KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLD 308
             L+    ++L        +   L+N+ L     +   SV     F  + V+   I NL 
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 309 SIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLV 368
                        +        F+ +           +    F       +     + + 
Sbjct: 288 -------------ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 369 KINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL 428
            +++  +   I             +   +N        +       L+++ L+ N L + 
Sbjct: 335 MLSIS-DTPFIHMVCPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 429 EASHFPLERISFLDLSDNPLHC 450
                  + +S L+  D  L+ 
Sbjct: 393 FKVALMTKNMSSLETLDVSLNS 414

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.6 bits (230), Expect = 5e-20
 Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 6/226 (2%)

Query: 73  YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
           Y+ + +L ++        +++      L+  ++         +  +    E+    LS +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
               I+            L  + N  T     +  S+LK L+ L L  N + +     L 
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398

Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTL-RTLHSL 251
                SL  L ++ N + +   +       ++  L LSSN+++    S F  L   +  L
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVL 455

Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
           DL NN + +IP K ++ L AL  L+++ N   ++    F  L SL+
Sbjct: 456 DLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 8/185 (4%)

Query: 75  ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
           E+    LS++    +        +    LN + N  +         LK L+TL L  N +
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 135 SVINKTAFRDT--LHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
               K A        LE L +S N++         +  +S+ +L L +N +     +V  
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML---TGSVFR 446

Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLD 252
            LP + +  L L+ N I + +       L  L  L ++SN +  + +  F  L +L  + 
Sbjct: 447 CLPPK-VKVLDLHNNRIMS-IPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

Query: 253 LSNNN 257
           L +N 
Sbjct: 504 LHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.1 bits (213), Expect = 9e-18
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 6/220 (2%)

Query: 64  SNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKE 123
               Y+ +    L    +            +    ++    +S ++   +          
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 124 LKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFED-SEIFSSLKSLRILKLDNNQ 182
              L+ + N  +            L+ LIL  N +  F   + +  ++ SL  L +  N 
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF 242
           +     +       +S+  L L+ N++   +    P  +  L    L +N I  I +   
Sbjct: 415 LNSHAYDRTCAWA-ESILVLNLSSNMLTGSVFRCLPPKVKVLD---LHNNRIMSIPKD-V 469

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
             L+ L  L++++N L ++P     +L++L  + L  N +
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.8 bits (207), Expect = 4e-17
 Identities = 61/418 (14%), Positives = 132/418 (31%), Gaps = 64/418 (15%)

Query: 54  QTIILRENRISNV-------HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS 106
             + L   +   +        +     ++L S  +   +   L   N    + + + N  
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNN--ITYFEDS 164
           ++    +S +    L +L  + L+      +       T    LL ++  +   T+    
Sbjct: 209 FSVQVNMSVNALGHL-QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267

Query: 165 EIFSSLKSLRI--LKLDNNQILDVPNN---VLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
           ++F       +  L + N  I +  +      S    +SL   ++   +     +  +  
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327

Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
               ++   LS +   FI+     +  +   L+ + N  +    +  S L  L  L L  
Sbjct: 328 -FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 280 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL 339
           N   N   VA  +     L  +++  N          SL       +   A S+      
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLN----------SLNSHAYDRTCAWAESIL----- 431

Query: 340 KCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM 399
               L+LS N    +    F+ L                          +++ + ++ N 
Sbjct: 432 ---VLNLSSNM---LTGSVFRCL------------------------PPKVKVLDLHNN- 460

Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLW 456
            +  +P         L+ +++  N L  +    F  L  + ++ L DNP  C C  + 
Sbjct: 461 RIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  108 bits (271), Expect = 5e-27
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 28/186 (15%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CP+ C C +      C   GL  +P  L   +                         + L
Sbjct: 5   CPAACTCSNNI--VDCRGKGLTEIPTNLPETITE-----------------------IRL 39

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             N I V+    F    KL  +++S N+IS L+ D F+GL+ L +L L  NKI+ + K+ 
Sbjct: 40  EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99

Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
           F     L+LL+L+ N I      + F  L +L +L L +N++  +     S L   ++  
Sbjct: 100 FEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR--AIQT 156

Query: 202 LYLNEN 207
           ++L +N
Sbjct: 157 MHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210
           + L  N I        FS  K LR + L NNQI ++  +    L    L+ L L  N I 
Sbjct: 37  IRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRS--LNSLVLYGNKIT 93

Query: 211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLS 270
            +  + F   L +L  L L++N I+ +   +F  L  L+ L L +N L  I     S L 
Sbjct: 94  ELPKSLFE-GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 271 ALVNLDLSGNNF 282
           A+  + L+ N F
Sbjct: 153 AIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
           ++  ++L+ N I  +P    S      L  + L+ N I  +  ++F   L +L++L L  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYG 89

Query: 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK 291
           N I+ + +S F  L +L  L L+ N ++ +       L  L  L L  N    I    F 
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 292 SLFSLK 297
            L +++
Sbjct: 150 PLRAIQ 155

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 57/290 (19%), Positives = 82/290 (28%), Gaps = 113/290 (38%)

Query: 251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI 310
           + L  N +  IP    S    L  +DLS N  S +   AF+ L SL              
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN------------- 83

Query: 311 DQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI 370
                                            L L GN  + +    F+ LFSL+L+ +
Sbjct: 84  --------------------------------SLVLYGNKITELPKSLFEGLFSLQLLLL 111

Query: 371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA 430
           N               N             +  L    FQ   NL  +SL  N L  +  
Sbjct: 112 N--------------AN------------KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 431 SHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTT 489
             F PL  I  + L+ NP  CDC+L WL                                
Sbjct: 146 GTFSPLRAIQTMHLAQNPFICDCHLKWLA------------------------------- 174

Query: 490 TEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNT 539
                 D +  N     I  +  +C+SP  +    +  +      C +  
Sbjct: 175 ------DYLHTN----PIETSGARCTSPRRLANKRIGQIKSKKFRCSAAA 214

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.0 bits (164), Expect = 8e-13
 Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 2/111 (1%)

Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251
           +NLP +++  + L +N I+ +   +F      L  + LS+N IS +   +F  LR+L+SL
Sbjct: 28  TNLP-ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85

Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
            L  N ++ +P      L +L  L L+ N  + +   AF+ L +L L+ + 
Sbjct: 86  VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  113 bits (284), Expect = 1e-26
 Identities = 63/275 (22%), Positives = 100/275 (36%), Gaps = 23/275 (8%)

Query: 54  QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
              I     I  +      + E    +L    +           N +  +  + ++I ++
Sbjct: 2   GETITVSTPIKQIF-PDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV 58

Query: 114 SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL 173
                + L  +  L L+ NK++ I      +  +L  L L  N I           LK L
Sbjct: 59  QG--IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSS---LKDLKKL 111

Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
           + L L++N I D+    L +LP   L  LYL  N I  +   +    LT L TL+L  N 
Sbjct: 112 KSLSLEHNGISDING--LVHLP--QLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ 164

Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL 293
           IS I       L  L +L LS N++S +  + L+ L  L  L+L      N       +L
Sbjct: 165 ISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 294 FSLKLVK--INLIPNLDSIDQPLSLSLPPLLLSLS 326
                VK     +   + I        P +   L 
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLP 255

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (277), Expect = 1e-25
 Identities = 59/284 (20%), Positives = 105/284 (36%), Gaps = 23/284 (8%)

Query: 51  PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
            E     L++  +++   T +    +  +  + + I  +     +Y   +  L ++ N++
Sbjct: 21  AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKL 77

Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
           + +       LK L  L L  NKI  +  ++ +D   L+ L L  N I+   D      L
Sbjct: 78  TDIK--PLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGIS---DINGLVHL 130

Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
             L  L L NN+I D+    LS L    L  L L +N I  ++  +    LT L  L LS
Sbjct: 131 PQLESLYLGNNKITDITV--LSRLT--KLDTLSLEDNQISDIVPLA---GLTKLQNLYLS 183

Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290
            N IS +   +   L+ L  L+L +      P    S L     +  +  +    + ++ 
Sbjct: 184 KNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLT 334
                    K N+  +L      +S      +        F   
Sbjct: 242 DG----DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGR 281

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 96.3 bits (239), Expect = 4e-21
 Identities = 65/328 (19%), Positives = 115/328 (35%), Gaps = 47/328 (14%)

Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
           +         I  +  D      E    +L    ++        +   ++ +I + ++I 
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK 56

Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
             +       L ++  L L+ N++ D+    L+NL +  L +L+L+EN I+ +   S   
Sbjct: 57  SVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKN--LGWLFLDENKIKDL---SSLK 106

Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
            L  L +L+L  N IS I  +  V L  L SL L NN ++ I    LS+L+ L  L L  
Sbjct: 107 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLED 162

Query: 280 NNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGT 338
           N  S+I  +A    L +L L K N I +L                        +L  L  
Sbjct: 163 NQISDIVPLAGLTKLQNLYLSK-NHISDLR-----------------------ALAGLKN 198

Query: 339 LKCDRLDLSGNNFSNIDSVAFKSLFSLKLVK--INLIPNLDSIDQRAFVDNIQLETVIIN 396
           L    L+L      N       +L     VK     +   + I      +   ++  +  
Sbjct: 199 LD--VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256

Query: 397 ENMNLKQLPSKLFQGNTNLKSVSLKGNS 424
               +  +  +             +   
Sbjct: 257 FTNEVSFIFYQPVTIGKAKARFHGRVTQ 284

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 5/141 (3%)

Query: 46  PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
            +   P+++++ L  N+I+++   LS   +L +L L  N+I+ +         KL NL +
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYL 182

Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
           S N IS L      GLK L  L+L   +          + +    +  +  ++   E   
Sbjct: 183 SKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 166 IFSSLKSLRILKLDNNQILDV 186
                +   +         +V
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEV 261

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (279), Expect = 3e-26
 Identities = 88/407 (21%), Positives = 165/407 (40%), Gaps = 40/407 (9%)

Query: 46  PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
            ++    +  I    N+++++   L    +L  + ++ N+I  +          L  L +
Sbjct: 63  GVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTL 119

Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
             N+I+ +     K L  L  L+LS N IS I  +A      L+ L    N +T   D +
Sbjct: 120 FNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVT---DLK 171

Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
             ++L +L  L + +N++ D+    L+ L   +L  L    N I  +   +    LTNL 
Sbjct: 172 PLANLTTLERLDISSNKVSDISV--LAKLT--NLESLIATNNQISDI---TPLGILTNLD 224

Query: 226 TLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285
            L+L+ N +  I   +  +L  L  LDL+NN +S +    LS L+ L  L L  N  SNI
Sbjct: 225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 286 DSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC-D 342
                  L +L  +++  N + ++  I    +L+     L+L       ++P+ +L    
Sbjct: 281 S--PLAGLTALTNLELNENQLEDISPISNLKNLT----YLTLYFNNISDISPVSSLTKLQ 334

Query: 343 RLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
           RL    N  S++ S+A   ++  L     N I +L  +         ++  + +N+    
Sbjct: 335 RLFFYNNKVSDVSSLANLTNINWLSAGH-NQISDLTPLAN-----LTRITQLGLNDQ-AW 387

Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
              P      N ++ +            A+       +  D++ N  
Sbjct: 388 TNAPVNYKA-NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (271), Expect = 3e-25
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 42/398 (10%)

Query: 55  TIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALS 114
             I ++  I+ + +T +   E     L    +    + +    +++  L      I ++ 
Sbjct: 6   ATITQDTPINQI-FTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSID 62

Query: 115 KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR 174
               + L  L  ++ S N+++ I  T  ++   L  ++++ N I    D    ++L +L 
Sbjct: 63  --GVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIA---DITPLANLTNLT 115

Query: 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII 234
            L L NNQI D+    L NL   +L+ L L+ N I  +   S    LT+L  L+  + + 
Sbjct: 116 GLTLFNNQITDIDP--LKNLT--NLNRLELSSNTISDI---SALSGLTSLQQLSFGNQVT 168

Query: 235 SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA-FKSL 293
                     L TL  LD+S+N +S I    L+KL+ L +L  + N  S+I  +    +L
Sbjct: 169 DLKP---LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNL 223

Query: 294 FSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL-KCDRLDLSGNNFS 352
             L L   N + ++ ++    +L+     L L+     +L PL  L K   L L  N  S
Sbjct: 224 DELSLNG-NQLKDIGTLASLTNLT----DLDLANNQISNLAPLSGLTKLTELKLGANQIS 278

Query: 353 NIDSVAFKSLFSLKLVKI--NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ 410
           NI       L +L  +++  N + ++  I          L  + +  N N+  +      
Sbjct: 279 NIS--PLAGLTALTNLELNENQLEDISPISN-----LKNLTYLTLYFN-NISDISP--VS 328

Query: 411 GNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
             T L+ +    N +S + +    L  I++L    N +
Sbjct: 329 SLTKLQRLFFYNNKVSDVSSLAN-LTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.3 bits (243), Expect = 1e-21
 Identities = 63/287 (21%), Positives = 116/287 (40%), Gaps = 23/287 (8%)

Query: 46  PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
            +     ++++I   N+IS++   L     L  L L+ N++  +G+        L +L++
Sbjct: 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDL 250

Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
           + N+IS L+     GL +L  L L  N+IS I  +       L  L L+ N +    D  
Sbjct: 251 ANNQISNLA--PLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLE---DIS 303

Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
             S+LK+L  L L  N I D+    +S+L    L  L+   N +  V   +    LTN++
Sbjct: 304 PISNLKNLTYLTLYFNNISDISP--VSSLT--KLQRLFFYNNKVSDVSSLAN---LTNIN 356

Query: 226 TLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285
            L+   N IS +  +    L  +  L L++   +  P    + +S    +          
Sbjct: 357 WLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

Query: 286 DSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFS 332
            +++          + ++  NL S    +S +    +        FS
Sbjct: 415 ATISDGG----SYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFS 457

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.0 bits (229), Expect = 7e-20
 Identities = 83/354 (23%), Positives = 141/354 (39%), Gaps = 38/354 (10%)

Query: 100 LLNLNISY-NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
           L +  I+    I+ +  D    L E     L    ++     +  D   +  L      I
Sbjct: 3   LGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGI 58

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
              +       L +L  +   NNQ+ D+    L NL    L  + +N N I  +   +  
Sbjct: 59  KSIDG---VEYLNNLTQINFSNNQLTDITP--LKNLT--KLVDILMNNNQIADITPLA-- 109

Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
             LTNL  L L +N I+ I       L  L+ L+LS+N +S I    LS L++L  L   
Sbjct: 110 -NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG 164

Query: 279 GNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG 337
            N  +++  +A   +L  L +   N + ++  + +  +L      L  +      +TPLG
Sbjct: 165 -NQVTDLKPLANLTTLERLDISS-NKVSDISVLAKLTNLE----SLIATNNQISDITPLG 218

Query: 338 TLKC-DRLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVII 395
            L   D L L+GN   +I ++A   +L  L L   N I NL  +         +L  + +
Sbjct: 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN-NQISNLAPLSG-----LTKLTELKL 272

Query: 396 NENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH 449
             N  +  +      G T L ++ L  N L  +      L+ +++L L  N + 
Sbjct: 273 GAN-QISNISP--LAGLTALTNLELNENQLEDISPISN-LKNLTYLTLYFNNIS 322

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  105 bits (265), Expect = 2e-25
 Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 11/213 (5%)

Query: 21  ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-LSFYIELRSL 79
           IC          LE +C    L  +P  L  +   + L EN +       L  Y  L  L
Sbjct: 3   ICEVSKVA--SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           +L   ++  L          L  L++S+N++ +L     + L  L  LD+S+N+++ +  
Sbjct: 61  NLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPL 117

Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
            A R    L+ L L  N +       + +    L  L L NN + ++P  +L+ L +  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPG-LLTPTPKLEKLSLANNNLTELPAGLLNGLEN--L 174

Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
             L L EN + T+      F    L    L  N
Sbjct: 175 DTLLLQENSLYTIPKGF--FGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  102 bits (255), Expect = 3e-24
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 8/179 (4%)

Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
            L++S N +   S  T      L  L+L   +++ +          L  L LS N +   
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL 92

Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
               +  +L +L +L +  N++  +P   L  L    L  LYL  N ++T+         
Sbjct: 93  --PLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--ELQELYLKGNELKTLPPGLLT-PT 147

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
             L  L+L++N ++ +       L  L +L L  N+L  IP K       L    L GN
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 92.1 bits (229), Expect = 9e-21
 Identities = 65/295 (22%), Positives = 102/295 (34%), Gaps = 82/295 (27%)

Query: 167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHT 226
            S + S   +  D   +  +P     +LP      L+L+ENL+ T    +     T L  
Sbjct: 6   VSKVASHLEVNCDKRNLTALP----PDLPK-DTTILHLSENLLYTFSLATLM-PYTRLTQ 59

Query: 227 LALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID 286
           L L    ++ +      TL  L +LDLS+N L ++P      L AL  LD+S N  +++ 
Sbjct: 60  LNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLP 116

Query: 287 SVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346
             A + L  L+                                              L L
Sbjct: 117 LGALRGLGELQ---------------------------------------------ELYL 131

Query: 347 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS 406
            GN    +          L+  K++L  N                        NL +LP+
Sbjct: 132 KGNELKTLPPGLLTPTPKLE--KLSLANN------------------------NLTELPA 165

Query: 407 KLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWL--WI 459
            L  G  NL ++ L+ NSL  +    F    + F  L  NP  C+C +L+   W+
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 91.3 bits (227), Expect = 1e-20
 Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 10/181 (5%)

Query: 117 TFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL 176
               +     ++     ++ +     +DT    +L LS N +  F  +        L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLA-TLMPYTRLTQL 60

Query: 177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF 236
            LD  ++  +   V   LP   L  L L+ N +   L      TL  L  L +S N ++ 
Sbjct: 61  NLDRAELTKLQ--VDGTLP--VLGTLDLSHNQL-QSLPLLGQ-TLPALTVLDVSFNRLTS 114

Query: 237 INESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSL 296
           +   +   L  L  L L  N L  +P   L+    L  L L+ NN + + +     L +L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 297 K 297
            
Sbjct: 175 D 175

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  103 bits (260), Expect = 9e-25
 Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 21/254 (8%)

Query: 51  PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
                I   ++ +++   T +    + +L      +  +     +Y N L+ L +  N+I
Sbjct: 19  ANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75

Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
           + L+    K L ++  L+LS N +  +  +A      ++ L L+   IT   D    + L
Sbjct: 76  TDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT---DVTPLAGL 128

Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
            +L++L LD NQI ++    L+ L   +L YL +    +  +   +    L+ L TL   
Sbjct: 129 SNLQVLYLDLNQITNISP--LAGLT--NLQYLSIGNAQVSDLTPLA---NLSKLTTLKAD 181

Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290
            N IS I  S   +L  L  + L NN +S +    L+  S L  + L+    +N      
Sbjct: 182 DNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYN 237

Query: 291 KSLFSLKLVKINLI 304
            +L    +VK    
Sbjct: 238 NNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.5 bits (238), Expect = 9e-22
 Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 19/269 (7%)

Query: 43  EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
           + V       + T+      ++ +   + +   L  L+L  N+I  L     +   K+  
Sbjct: 33  DTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITE 89

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
           L +S N +  +S     GL+ +KTLDL+  +I+ +         +L++L L  N IT   
Sbjct: 90  LELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS 145

Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
                + L +L+ L + N Q+ D+    L+NL    L  L  ++N I  +   S   +L 
Sbjct: 146 P---LAGLTNLQYLSIGNAQVSDLTP--LANLS--KLTTLKADDNKISDI---SPLASLP 195

Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
           NL  + L +N IS +  S       L  + L+N  ++  P    + L     +       
Sbjct: 196 NLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

Query: 283 SNIDSVAFKSLFSLKLVKINLIPNLDSID 311
               +++    ++   +  NL   ++++ 
Sbjct: 254 IAPATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 56/276 (20%), Positives = 94/276 (34%), Gaps = 45/276 (16%)

Query: 99  KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
             + +    + ++     T   L  + TL      ++ I     +   +L  L L  N I
Sbjct: 20  NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
           T   D     +L  +  L+L  N + +V    ++ L   S+  L L    I  V   +  
Sbjct: 76  T---DLAPLKNLTKITELELSGNPLKNVSA--IAGLQ--SIKTLDLTSTQITDVTPLA-- 126

Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
             L+NL  L L  N I+ I  S    L  L  L + N  +S +    L+ LS L  L   
Sbjct: 127 -GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181

Query: 279 GNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG 337
            N  S+I  +A   +L  + L   N I ++  +    +L                     
Sbjct: 182 DNKISDISPLASLPNLIEVHLKN-NQISDVSPLANTSNLF-------------------- 220

Query: 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLI 373
                 + L+    +N       +L    +VK    
Sbjct: 221 -----IVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 15/197 (7%)

Query: 46  PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
            I     ++T+ L   +I++V   L+    L+ L L +N+I  +          L  L+I
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSI 158

Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
              ++S L+      L +L TL    NKIS I  +      +L  + L  N I+   D  
Sbjct: 159 GNAQVSDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS---DVS 211

Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
             ++  +L I+ L N  I + P    +NL     + +             S   T  + +
Sbjct: 212 PLANTSNLFIVTLTNQTITNQPVFYNNNLV--VPNVVKGPSGAPIAPATISDNGTYASPN 269

Query: 226 TLALSSNIISFINESSF 242
              L+ N+ SFIN  S+
Sbjct: 270 ---LTWNLTSFINNVSY 283

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 36/209 (17%), Positives = 76/209 (36%), Gaps = 24/209 (11%)

Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA-FKSLFSLKLV--KI 301
           L     +    +N++   T   + L  +  L   G   + I+ V    +L  L+L   +I
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC-DRLDLSGNNFSNIDSVA-F 359
             +  L ++ +   L L    L        +++ +  L+    LDL+    +++  +A  
Sbjct: 76  TDLAPLKNLTKITELELSGNPLK-------NVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 360 KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVS 419
            +L  L L   N I N+  +          L+ + I     +  L        + L ++ 
Sbjct: 129 SNLQVLYLDL-NQITNISPLAG-----LTNLQYLSIGNA-QVSDLTP--LANLSKLTTLK 179

Query: 420 LKGNSLSHLEASHFPLERISFLDLSDNPL 448
              N +S +      L  +  + L +N +
Sbjct: 180 ADDNKISDISPLA-SLPNLIEVHLKNNQI 207

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  100 bits (252), Expect = 2e-24
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 5/162 (3%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF--YIELRSL 79
           CP +C+C        C++  L  +P  +      + L  N  + +  T  F    +LR +
Sbjct: 5   CPEKCRCEGT--TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKI 62

Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           + S NKI  +    FE  + +  + ++ N +  +    FKGL+ LKTL L  N+I+ +  
Sbjct: 63  NFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122

Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
            +F     + LL L  N IT       F +L SL  L L  N
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
             L L+ N  T  E + IF  L  LR +   NN+I D+            ++ + L  N 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG--VNEILLTSNR 92

Query: 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
           +E V    F   L +L TL L SN I+ +   SF+ L ++  L L +N ++ +       
Sbjct: 93  LENVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 269 LSALVNLDLSGNNF 282
           L +L  L+L  N F
Sbjct: 152 LHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 39/199 (19%), Positives = 79/199 (39%), Gaps = 46/199 (23%)

Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNL 401
           +++ S N  ++I+  AF+    +   +I L  N L+++  + F     L+T+++  N  +
Sbjct: 61  KINFSNNKITDIEEGAFEGASGVN--EILLTSNRLENVQHKMFKGLESLKTLMLRSN-RI 117

Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWIL 460
             + +  F G ++++ +SL  N ++ +    F  L  +S L+L  NP +C+C L WL   
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL--- 174

Query: 461 VQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDI 520
                                              + + K      IV  N +C  P  +
Sbjct: 175 ----------------------------------GEWLRKK----RIVTGNPRCQKPYFL 196

Query: 521 KGLEVKAVPENSVHCESNT 539
           K + ++ V      C+   
Sbjct: 197 KEIPIQDVAIQDFTCDDAH 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 25/101 (24%), Positives = 45/101 (44%)

Query: 202 LYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261
           L LN N    +        L  L  +  S+N I+ I E +F     ++ + L++N L  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 262 PTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN 302
             K    L +L  L L  N  + + + +F  L S++L+ + 
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (256), Expect = 5e-23
 Identities = 59/314 (18%), Positives = 111/314 (35%), Gaps = 46/314 (14%)

Query: 51  PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
           PE++T+ +  N+++++       +EL      +  +  L        + L  L I  N++
Sbjct: 81  PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQL 133

Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
           ++L          L+ L +S N+++ +          L  L    N +T      +    
Sbjct: 134 TSLPVL----PPGLQELSVSDNQLASLPALPS----ELCKLWAYNNQLT-----SLPMLP 180

Query: 171 KSLRILKLDNNQI------------LDVPNNVLSNLPHQ--SLHYLYLNENLIETVLDNS 216
             L+ L + +NQ+            L   NN L++LP     L  L ++ N +      S
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-----S 235

Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
            P   + L  L +S N ++ +          L SL +  N L+ +P + L  LS+   ++
Sbjct: 236 LPVLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLP-ESLIHLSSETTVN 290

Query: 277 LSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPL 336
           L GN  S     A + + S       +I    +            L   +          
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA--PRETRALHLAAADWLVPAREG 348

Query: 337 GTLKCDRLDLSGNN 350
                DR  + G  
Sbjct: 349 EPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.0 bits (231), Expect = 6e-20
 Identities = 64/351 (18%), Positives = 107/351 (30%), Gaps = 94/351 (26%)

Query: 98  NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNN 157
           N    LN+  + ++ L       +  L    +  N ++ +          L  L +S N 
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAHITTL---VIPDNNLTSLPALPP----ELRTLEVSGNQ 92

Query: 158 ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSF 217
           +T          L  L I       +  +P+          L  L++  N +      S 
Sbjct: 93  LTSLPVL--PPGLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQLT-----SL 136

Query: 218 PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL 277
           P     L  L++S N ++ +          L  L   NN L+++P       S L  L +
Sbjct: 137 PVLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLP----MLPSGLQELSV 188

Query: 278 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG 337
           S N  +++ +     L+ L      L             SLP L   L            
Sbjct: 189 SDNQLASLPT-LPSELYKLWAYNNRLT------------SLPALPSGLK----------- 224

Query: 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINE 397
                 L +SGN  +++                 L   L  +                  
Sbjct: 225 -----ELIVSGNRLTSLP---------------VLPSELKELMVS--------------- 249

Query: 398 NMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
              L  LP       + L S+S+  N L+ L  S   L   + ++L  NPL
Sbjct: 250 GNRLTSLPMLP----SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.3 bits (229), Expect = 9e-20
 Identities = 75/383 (19%), Positives = 131/383 (34%), Gaps = 74/383 (19%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
              L++  + +  L          +  L I  N +++L         EL+TL++S N+++
Sbjct: 42  NAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLT 94

Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI------------ 183
            +        L L +      ++         +    L  L +  NQ+            
Sbjct: 95  SLPVL-PPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLTSLPVLPPGLQE 145

Query: 184 LDVPNNVLSNLPHQ--SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESS 241
           L V +N L++LP     L  L+   N +      S P   + L  L++S N ++ +    
Sbjct: 146 LSVSDNQLASLPALPSELCKLWAYNNQLT-----SLPMLPSGLQELSVSDNQLASLPTL- 199

Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV-- 299
                 L+ L   NN L+++P    +  S L  L +SGN  +++       L  L +   
Sbjct: 200 ---PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPV-LPSELKELMVSGN 251

Query: 300 KINLIPNLDSIDQPLSLS------LPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSN 353
           ++  +P L S    LS+       LP  L+ LS     S T         ++L GN  S 
Sbjct: 252 RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLS-----SET--------TVNLEGNPLSE 298

Query: 354 IDSVAFKSLFSLKLVKINLIPNLDSIDQR-------AFVDNIQLETVIINENMNLKQLPS 406
               A + + S       +I    +                  L      E     +   
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

Query: 407 KLFQGNTNLKSVSLKGNSLSHLE 429
             F    N  + SL  + LS  E
Sbjct: 359 --FGQEDNADAFSLFLDRLSETE 379

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 98.6 bits (246), Expect = 5e-23
 Identities = 55/268 (20%), Positives = 102/268 (38%), Gaps = 19/268 (7%)

Query: 43  EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
           ++       E     L++  +++   T +    +  +  + + I  +     +Y   +  
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTK 72

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
           L ++ N+++ +       LK L  L L  NK+  +  ++ +D   L+ L L  N I+   
Sbjct: 73  LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN 128

Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
                  L  L  L L NN+I D+    LS L    L  L L +N I  +        LT
Sbjct: 129 G---LVHLPQLESLYLGNNKITDITV--LSRLT--KLDTLSLEDNQISDI---VPLAGLT 178

Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
            L  L LS N IS +   +   L+ L  L+L +      P    S L     +  +  + 
Sbjct: 179 KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 283 SNIDSVAFKSLFSLKLVKINLIPNLDSI 310
              + ++    +    VK +L    + +
Sbjct: 237 VTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 91.7 bits (228), Expect = 1e-20
 Identities = 64/260 (24%), Positives = 101/260 (38%), Gaps = 17/260 (6%)

Query: 43  EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
           + V       +  II   + I +V   + +   +  L L+ NK+  +          L  
Sbjct: 38  DAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGW 94

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
           L +  N++  LS  + K LK+LK+L L +N IS I          LE L L  N IT   
Sbjct: 95  LFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--- 147

Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
           D  + S L  L  L L++NQI D+    L+ L    L  LYL++N I  +   +    L 
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIVP--LAGLT--KLQNLYLSKNHISDLRALA---GLK 200

Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
           NL  L L S        +    L   +++  ++ +L               N+      F
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 260

Query: 283 SNIDSVAFKSLFSLKLVKIN 302
           +N  S  F    ++   K  
Sbjct: 261 TNEVSFIFYQPVTIGKAKAR 280

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.5 bits (199), Expect = 6e-17
 Identities = 68/313 (21%), Positives = 117/313 (37%), Gaps = 47/313 (15%)

Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
             I  +  D      E    +L    ++        +   ++ +I + ++I   +     
Sbjct: 12  TPIKQIFSD--DAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG---I 64

Query: 168 SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL 227
             L ++  L L+ N++ D+    L+NL +  L +L+L+EN ++ +   S    L  L +L
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKP--LANLKN--LGWLFLDENKVKDL---SSLKDLKKLKSL 117

Query: 228 ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS 287
           +L  N IS I  +  V L  L SL L NN ++ I    LS+L+ L  L L  N  S+I  
Sbjct: 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 173

Query: 288 VA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346
           +A    L +L L K N I +L +                       L  L  L    L+L
Sbjct: 174 LAGLTKLQNLYLSK-NHISDLRA-----------------------LAGLKNLD--VLEL 207

Query: 347 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS 406
                 N       +L     VK N   +L + +  +   + +   V  +         S
Sbjct: 208 FSQECLNKPINHQSNLVVPNTVK-NTDGSLVTPEIISDDGDYEKPNVKWH-LPEFTNEVS 265

Query: 407 KLFQGNTNLKSVS 419
            +F     +    
Sbjct: 266 FIFYQPVTIGKAK 278

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (250), Expect = 1e-22
 Identities = 75/395 (18%), Positives = 119/395 (30%), Gaps = 65/395 (16%)

Query: 54  QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL 113
             +       +    +      L SLD   + I  +     E    L  L  + N I+ L
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL 79

Query: 114 SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL 173
                     L  L    NK++ ++ T       L  L    N +T  +     S    L
Sbjct: 80  D---LSQNTNLTYLACDSNKLTNLDVTPLT---KLTYLNCDTNKLTKLD----VSQNPLL 129

Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
             L    N + ++  +  + L       L  + N   T LD +     T L TL  S N 
Sbjct: 130 TYLNCARNTLTEIDVSHNTQL-----TELDCHLNKKITKLDVT---PQTQLTTLDCSFNK 181

Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL 293
           I+ ++ S     + L+ L+   NN++ +    L++   L  LD S N  + ID      L
Sbjct: 182 ITELDVSQ---NKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEIDVTPLTQL 235

Query: 294 FSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSN 353
                    L              L    LS               K   L     +   
Sbjct: 236 TYFDCSVNPLT------------ELDVSTLS---------------KLTTLHCIQTDLLE 268

Query: 354 IDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNT 413
           ID      L   +      I  LD         N QL  +       + +L       N 
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELD------VTHNTQLYLLDCQAA-GITELD---LSQNP 318

Query: 414 NLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
            L  + L    L+ L+ SH    ++  L   +  +
Sbjct: 319 KLVYLYLNNTELTELDVSHNT--KLKSLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 1e-21
 Identities = 67/420 (15%), Positives = 136/420 (32%), Gaps = 66/420 (15%)

Query: 29  FDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINV 88
           F  ++ A+      + +  +    + ++    + I+++   +     L  L  + N I  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT 78

Query: 89  LGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHL 148
           L   +      L  L    N+++ L       L +L  L+   NK++ ++ +       L
Sbjct: 79  L---DLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPL---L 129

Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
             L  + N +T  +     S    L  L    N+ +   +  ++      L  L  + N 
Sbjct: 130 TYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD--VTPQT--QLTTLDCSFNK 181

Query: 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
           I   LD S       L+ L   +N I+ ++ +  + L  L   D S+N L+ I    ++ 
Sbjct: 182 ITE-LDVS---QNKLLNRLNCDTNNITKLDLNQNIQLTFL---DCSSNKLTEID---VTP 231

Query: 269 LSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIP 328
           L+ L   D S N  + +D      L +L       +  +D       +            
Sbjct: 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHC-IQTDLLEIDLTHNTQLIYFQAEGCRKIKE 290

Query: 329 LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNI 388
           L  +       +   LD      + +D                               N 
Sbjct: 291 LDVTHNT----QLYLLDCQAAGITELD----------------------------LSQNP 318

Query: 389 QLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
           +L  + +N    L +L       NT LKS+S     +    +    +  ++    ++   
Sbjct: 319 KLVYLYLNNT-ELTELD---VSHNTKLKSLSCVNAHIQDFSSVGK-IPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 62/324 (19%), Positives = 111/324 (34%), Gaps = 31/324 (9%)

Query: 36  SCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFE 95
           +C    L  + +  NP +  +    N ++ +   +S   +L  LD  +NK   +   +  
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKK--ITKLDVT 167

Query: 96  YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF 155
            Q +L  L+ S+N+I+ L        K L  L+   N I+ ++       + L  L  S 
Sbjct: 168 PQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSS 221

Query: 156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDN 215
           N +T  +     + L  L       N + ++  + LS L       L+  +  +   +D 
Sbjct: 222 NKLTEID----VTPLTQLTYFDCSVNPLTELDVSTLSKLT-----TLHCIQTDLLE-IDL 271

Query: 216 SFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNL 275
           +     T L            I E        L+ LD     ++ +    LS+   LV L
Sbjct: 272 TH---NTQLIYFQAEGC--RKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYL 323

Query: 276 DLSGNNFSNIDSVAFKSLFSLKLV--KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSL 333
            L+    + +D      L SL  V   I    ++  I    +                + 
Sbjct: 324 YLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTN 383

Query: 334 TPL-GTLKCDRLDLSGNNFSNIDS 356
             L   +  D LD  GN  +    
Sbjct: 384 NSLTIAVSPDLLDQFGNPMNIEPG 407

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.9 bits (213), Expect = 5e-18
 Identities = 70/351 (19%), Positives = 110/351 (31%), Gaps = 49/351 (13%)

Query: 46  PIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNI 105
            I+    +  +I   N I+ +   LS    L  L    NK+  L   +     KL  LN 
Sbjct: 59  GIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNC 113

Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
             N+++ L          L  L+ + N ++ I+         L  L    N         
Sbjct: 114 DTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKI---TKL 164

Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
             +    L  L    N+I ++    +S      L+ L  + N I T LD +       L 
Sbjct: 165 DVTPQTQLTTLDCSFNKITELD---VSQNK--LLNRLNCDTNNI-TKLDLN---QNIQLT 215

Query: 226 TLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285
            L  SSN ++ I+ +    L  L   D S N L+ +    +S LS L  L     +   I
Sbjct: 216 FLDCSSNKLTEIDVTP---LTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEI 269

Query: 286 DSVAFKSLFSLKLVKINLIPNLDSIDQP--------------LSLSLPPLLLSLSIP--- 328
           D      L   +      I  LD                   L LS  P L+ L +    
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329

Query: 329 -LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
                ++    LK   L     +  +  SV      +           +  
Sbjct: 330 LTELDVSHNTKLK--SLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPK 378

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 44/325 (13%), Positives = 106/325 (32%), Gaps = 28/325 (8%)

Query: 42  LEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLL 101
           +  + +    ++ T+    N+I+ +   +S    L  L+   N I  L   +     +L 
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKL---DLNQNIQLT 215

Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
            L+ S N+++ +       L +L   D S N ++ ++ +       L  L     ++   
Sbjct: 216 FLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLS---KLTTLHCIQTDLLEI 269

Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
           +     +    L   + +  + +   +  +++     L+ L      I   LD S     
Sbjct: 270 D----LTHNTQLIYFQAEGCRKIKELD--VTHNT--QLYLLDCQAAGITE-LDLSQ---N 317

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
             L  L L++  ++ ++ S       L SL   N ++    +  + K+ AL N   +   
Sbjct: 318 PKLVYLYLNNTELTELDVSH---NTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQ 372

Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
              +      +      V  +L+    +              + +     +L+       
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLK 366
                         +  F++   +K
Sbjct: 433 YTFTSENGAIVGTVTTPFEAPQPIK 457

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 20/230 (8%)

Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
           F   N  +   ++  +   +  S   L TL SLD  N++++ +    + KL+ L  L  +
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICT 72

Query: 279 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGT 338
            NN + +D     +L  L     N + NLD +     L+     L+        L     
Sbjct: 73  SNNITTLDLSQNTNLTYLACDS-NKLTNLD-VTPLTKLT----YLNCDTNKLTKLDVSQN 126

Query: 339 LKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINEN 398
                L+ + N  + ID      L  L       I  LD           QL T+  + N
Sbjct: 127 PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFN 180

Query: 399 MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
             + +L       N  L  ++   N+++ L+ +     +++FLD S N L
Sbjct: 181 -KITELD---VSQNKLLNRLNCDTNNITKLDLNQNI--QLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 27/207 (13%), Positives = 65/207 (31%), Gaps = 18/207 (8%)

Query: 36  SCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFE 95
            C+   L  + +    ++ T+   +  +      +      + +         +   +  
Sbjct: 239 DCSVNPLTELDVSTLSKLTTLHCIQTDLL----EIDLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 96  YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF 155
           +  +L  L+     I+ L         +L  L L+  +++ ++         L+ L    
Sbjct: 295 HNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVN 348

Query: 156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDN 215
            +I  F        + +L        Q + +P   L+N    SL      + L      N
Sbjct: 349 AHIQDFSS---VGKIPALNNNFEAEGQTITMPKETLTNN---SLTIAVSPDLL--DQFGN 400

Query: 216 SFPFTLTNLHTLALSSNIISFINESSF 242
                  +      ++N I++ N S+ 
Sbjct: 401 PMNIEPGDGGVYDQATNTITWENLSTD 427

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 5e-21
 Identities = 94/396 (23%), Positives = 145/396 (36%), Gaps = 62/396 (15%)

Query: 76  LRSLDLSVNKINVLG---SHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN 132
           + S+DLS   +NV     S +      L +L +S + I+  S   FK    L +LDLS N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRN 110

Query: 133 KIS--VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI---LDVP 187
            +S  V   T+      L+ L +S N + +         L SL +L L  N I     V 
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 188 NNVLSNLPHQSLHYLYLNENLIETVLDNSFPFT-LTNLHTLALSSNIIS-FINESSFVTL 245
             +        L +L ++ N     +      +   NL  L +SSN  S  I        
Sbjct: 171 WVLSDGCG--ELKHLAISGNK----ISGDVDVSRCVNLEFLDVSSNNFSTGI--PFLGDC 222

Query: 246 RTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDLSGNNFS-NIDSVAFKSLFSLKLVKINL 303
             L  LD+S N LS     + +S  + L  L++S N F   I  +  KSL  L L +   
Sbjct: 223 SALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281

Query: 304 ---IPNLDSIDQPLSLSLPPLLLS---LSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV 357
              IP  D +      +L  L LS       +         L+   L LS NNFS    +
Sbjct: 282 TGEIP--DFLSGACD-TLTGLDLSGNHFYGAVPPFFGSCSLLE--SLALSSNNFS--GEL 334

Query: 358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK-QLPSKLFQGNTNLK 416
              +L  ++                       L+ + ++ N     +LP  L   + +L 
Sbjct: 335 PMDTLLKMR----------------------GLKVLDLSFN-EFSGELPESLTNLSASLL 371

Query: 417 SVSLKGNSLS---HLEASHFPLERISFLDLSDNPLH 449
           ++ L  N+ S          P   +  L L +N   
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.0 bits (219), Expect = 3e-18
 Identities = 77/330 (23%), Positives = 124/330 (37%), Gaps = 43/330 (13%)

Query: 76  LRSLDLSVNKIN-VLGSHNFEYQNKLLNLNISYNEIS-ALSKDTFKGLKELKTLDLSYNK 133
           L SL LS N  +  L          L  L++S+NE S  L +        L TLDLS N 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 134 IS-VINKTAFRDTL-HLELLILSFNNITYFEDSEI---FSSLKSLRILKLDNN------- 181
            S  I     ++    L+ L L  N  T     +I    S+   L  L L  N       
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFT----GKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 182 ---------QILDVPNNVLS-NLPH-----QSLHYLYLNENLIETVLDNSFPFTLTNLHT 226
                    + L +  N+L   +P      ++L  L L+ N +   + +      TNL+ 
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNW 494

Query: 227 LALSSNIISFINESSFVTLRTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDLSGNNFS-N 284
           ++LS+N ++         L  L  L LSNN+ S  IP  +L    +L+ LDL+ N F+  
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGT 553

Query: 285 IDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCD 342
           I +  FK    +    I       + +            LL      +  L  L T    
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN-- 611

Query: 343 RLDLSGNNFSNIDSVAFKSLFSLKLVKINL 372
             +++   +    S  F +  S  ++ +++
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGS--MMFLDM 639

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 2e-13
 Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 37/261 (14%)

Query: 51  PEVQTIILRENRIS-NVHYTLSFYIELRSLDLSVNKINVLGS--HNFEYQNKLLNLNISY 107
             +Q + L+ N  +  +  TLS   EL SL LS N ++  G+   +    +KL +L +  
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWL 451

Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEI- 166
           N +          +K L+TL L +N ++    +   +  +L  + LS N +T     EI 
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT----GEIP 507

Query: 167 --FSSLKSLRILKLDNN----------------QILDVPNNVLS-NLPHQSLHYLYLNEN 207
                L++L ILKL NN                  LD+  N+ +  +P         +  
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA---MFKQSGK 564

Query: 208 LIETVLDNSFPFTLTN---LHTLALSSNIISFINE--SSFVTLRTLHSLDLSNNNLSAIP 262
           +    +       + N         + N++ F          L T +  ++++       
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 263 TKQLSKLSALVNLDLSGNNFS 283
           +       +++ LD+S N  S
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 9e-06
 Identities = 44/228 (19%), Positives = 84/228 (36%), Gaps = 43/228 (18%)

Query: 246 RTLHSLDLSNNNLSAIP---TKQLSKLSALVNLDLSGNNFS-NIDSVA-FKSLFSLKLVK 300
             + S+DLS+  L+      +  L  L+ L +L LS ++ + ++       SL SL L +
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 301 INL---IPNLDSID-----QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFS 352
            +L   +  L S+      + L++S   L     +     L  L       LDLS N+ S
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV-----LDLSANSIS 164

Query: 353 NIDSVAFKSLFSL-KLVKINL--------IP--NLDSIDQRAFVDNIQLETVIINENMNL 401
             + V +       +L  + +        +      +           LE + ++ N   
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN-----------LEFLDVSSNNFS 213

Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLS-HLEASHFPLERISFLDLSDNPL 448
             +P       + L+ + + GN LS     +      +  L++S N  
Sbjct: 214 TGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 91.6 bits (228), Expect = 8e-21
 Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 19/204 (9%)

Query: 99  KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
             +  N+    ++ L   + K L  ++  +   + I  +     +   +L+ L LS N I
Sbjct: 20  NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQI 75

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
           +   D      L  L  L ++ N++ +     L+ +P   L  L+L+ N +         
Sbjct: 76  S---DLSPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELRDTDSLI-- 125

Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
             L NL  L++ +N +  I       L  L  LDL  N ++      L++L  +  +DL+
Sbjct: 126 -HLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180

Query: 279 GNNFSNIDSVAFKSLFSLKLVKIN 302
           G    N        L+    VK  
Sbjct: 181 GQKCVNEPVKYQPELYITNTVKDP 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 47/249 (18%), Positives = 96/249 (38%), Gaps = 20/249 (8%)

Query: 43  EVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLN 102
           +V P           L +  ++++  +      +++ +   + I  L     ++   L  
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKE 67

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE 162
           L++S+N+IS LS    K L +L+ L ++ N++  +N         L  L L  N +    
Sbjct: 68  LHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNNELR--- 119

Query: 163 DSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT 222
           D++    LK+L IL + NN++  +    L  L    L  L L+ N I    +      L 
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVM--LGFLS--KLEVLDLHGNEIT---NTGGLTRLK 172

Query: 223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
            ++ + L+              L   +++   +     I    +S   + V+  +     
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELP 230

Query: 283 SNIDSVAFK 291
              D V++K
Sbjct: 231 VYTDEVSYK 239

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 18/192 (9%)

Query: 178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFI 237
                I  V       L +       L +  +  ++       L+ +      ++ I  +
Sbjct: 4   QRPTPINQVFP--DPGLAN--AVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQSL 56

Query: 238 NESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
             +       L  L LS+N +S +    L  L+ L  L ++ N   N++ +    L  L 
Sbjct: 57  --AGMQFFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF 112

Query: 298 LVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC-DRLDLSGNNFSNIDS 356
           L   N + + DS+    +L     +LS+      S+  LG L   + LDL GN  +N   
Sbjct: 113 LDN-NELRDTDSLIHLKNLE----ILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG 167

Query: 357 VA-FKSLFSLKL 367
           +   K +  + L
Sbjct: 168 LTRLKKVNWIDL 179

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.9 bits (221), Expect = 6e-19
 Identities = 68/414 (16%), Positives = 153/414 (36%), Gaps = 66/414 (15%)

Query: 51  PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
           P +++++   N ++ +         L   + ++  ++ L          L  L +S N++
Sbjct: 91  PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQL 143

Query: 111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL 170
             L     +    LK +D+  N +  +          LE +    N +    +     +L
Sbjct: 144 EKL--PELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE---LQNL 194

Query: 171 KSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
             L  +  DNN +  +P+         SL  +    N++E + +      L  L T+   
Sbjct: 195 PFLTAIYADNNSLKKLPDLP------LSLESIVAGNNILEELPELQ---NLPFLTTIYAD 245

Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF 290
           +N++  + +       +L +L++ +N L+ +P        +L  LD+S N FS +  +  
Sbjct: 246 NNLLKTLPDL----PPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLSEL-P 296

Query: 291 KSLFSLKL--VKINLIPNLDSIDQPLSLS------LPPLLLSLSIPLAFSLTPLGTL--- 339
            +L+ L     +I  + +L    + L++S      LP L   L   L  S   L  +   
Sbjct: 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER-LIASFNHLAEVPEL 355

Query: 340 --KCDRLDLSGNNFSNIDSVAFKSLFSLKL-VKINLIPNLDSIDQRAFVDNIQLETVIIN 396
                +L +  N       +  +S+  L++   +  +P L             L+ + + 
Sbjct: 356 PQNLKQLHVEYNPLREFPDI-PESVEDLRMNSHLAEVPELPQ----------NLKQLHVE 404

Query: 397 ENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL-EASHFPLERISFLDLSDNPLH 449
            N  L++ P        +++ + +    +    E +H   +++       +  H
Sbjct: 405 TN-PLREFPDIP----ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 65/396 (16%), Positives = 132/396 (33%), Gaps = 85/396 (21%)

Query: 48  QLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY 107
            L P ++ + +  N++  +   L     L+ +D+  N +  L     +    L  +    
Sbjct: 128 DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGN 182

Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF 167
           N++  L     + L  L  +    N +  +        L LE ++   N +    +    
Sbjct: 183 NQLEEL--PELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE---L 233

Query: 168 SSLKSLRILKLDNNQI------------LDVPNNVLSNLPH--QSLHYLYLNENLIETVL 213
            +L  L  +  DNN +            L+V +N L++LP   QSL +L ++EN+     
Sbjct: 234 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF---- 289

Query: 214 DNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALV 273
            +       NL+ L  SSN I  + +       +L  L++SNN L  +P    +    L 
Sbjct: 290 -SGLSELPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELP----ALPPRLE 340

Query: 274 NLDLSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPLLLSLSIPLAF 331
            L  S N+ + +         +LK + +  N +             +P  +  L +    
Sbjct: 341 RLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPD--------IPESVEDLRMNSHL 388

Query: 332 SLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLE 391
           +  P       +L +  N              S++ +++N                    
Sbjct: 389 AEVPELPQNLKQLHVETNPLREFP----DIPESVEDLRMN-------------------- 424

Query: 392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH 427
                 +  +        +    L+    + +   H
Sbjct: 425 ------SERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 75/417 (17%), Positives = 147/417 (35%), Gaps = 75/417 (17%)

Query: 50  NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE 109
           N  +Q  +   + ++ +               + ++           Q ++    +    
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 110 ISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSS 169
                       ++   L+L+   +S + +       HLE L+ S N++T   +     S
Sbjct: 70  -----------DRQAHELELNNLGLSSLPELPP----HLESLVASCNSLTELPEL--PQS 112

Query: 170 LKSLRILKLDNNQI---------LDVPNNVLSNLPH----QSLHYLYLNENLIETVLDNS 216
           LKSL +   +   +         L V NN L  LP       L  + ++ N ++      
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-----K 167

Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
            P    +L  +A  +N +  + E     L  L ++   NN+L  +P        +L ++ 
Sbjct: 168 LPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLP----DLPLSLESIV 221

Query: 277 LSGNNFSNIDSVAFKSLFSLKLVKI--NLIPNL-DSIDQPLSLSLPPLLLSLSIPLAFSL 333
              N    +     ++L  L  +    NL+  L D      +L++    L+    L  SL
Sbjct: 222 AGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSL 279

Query: 334 TPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKL--VKINLIPNLDSIDQRAFVDNIQLE 391
           T         LD+S N FS +  +   +L+ L     +I  + +L             LE
Sbjct: 280 T--------FLDVSENIFSGLSEL-PPNLYYLNASSNEIRSLCDLPP----------SLE 320

Query: 392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPL 448
            + ++ N  L +LP+        L+ +    N L+ +       + +  L +  NPL
Sbjct: 321 ELNVSNN-KLIELPALP----PRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 52/285 (18%), Positives = 101/285 (35%), Gaps = 47/285 (16%)

Query: 169 SLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA 228
           S   L+     ++ + ++P     N+  +S    Y   +  E             +    
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVE-AENV--KSKTEYYNAWSEWERNAPPGN-GEQREMAVSR 64

Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
           L   +            R  H L+L+N  LS++P         L +L  S N+ + +   
Sbjct: 65  LRDCL-----------DRQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELPE- 108

Query: 289 AFKSLFSLKL--VKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL 346
             +SL SL +    +  + +L  + + L +S   L     +P    L     LK   +D+
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL---EKLP---ELQNSSFLK--IIDV 160

Query: 347 SGNNFSNIDSVAFKSLFSLKLV--KINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQL 404
             N+   +      SL  +     ++  +P L ++          L  +  + N +LK+L
Sbjct: 161 DNNSLKKLPD-LPPSLEFIAAGNNQLEELPELQNL--------PFLTAIYADNN-SLKKL 210

Query: 405 PSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH 449
           P        +L+S+    N L  L      L  ++ +   +N L 
Sbjct: 211 PDLP----LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK 250

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 85.5 bits (212), Expect = 7e-19
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 29/213 (13%)

Query: 22  CPSR--CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSL 79
           C +   C C + K E  C    L+ VP  +  + +                        L
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTE-----------------------KL 40

Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           DL    +  L    F    KL  LN+ YN++  LS   F  L EL TL L+ N+++ +  
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
             F     L+ L L  N +       +F  L  L+ L+L+ NQ+  +P      L   +L
Sbjct: 101 GVFDHLTQLDKLYLGGNQLKSLPSG-VFDRLTKLKELRLNTNQLQSIPAGAFDKL--TNL 157

Query: 200 HYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
             L L+ N +++V   +F   L  L T+ L  N
Sbjct: 158 QTLSLSTNQLQSVPHGAFD-RLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 4/158 (2%)

Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
           + LDL    ++ ++   FR    L  L L +N +     + +F  L  L  L L NNQ+ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLA 96

Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244
            +P  V  +L    L  LYL  N ++++    F   LT L  L L++N +  I   +F  
Sbjct: 97  SLPLGVFDHL--TQLDKLYLGGNQLKSLPSGVFD-RLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
           L  L +L LS N L ++P     +L  L  + L GN F
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 79.7 bits (197), Expect = 6e-17
 Identities = 45/149 (30%), Positives = 61/149 (40%), Gaps = 4/149 (2%)

Query: 149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENL 208
           E L L    +    D+  F  L  L  L LD NQ+  +   V  +L    L  L L  N 
Sbjct: 38  EKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLT--ELGTLGLANNQ 94

Query: 209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
           + ++    F   LT L  L L  N +  +    F  L  L  L L+ N L +IP     K
Sbjct: 95  LASLPLGVFD-HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 269 LSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
           L+ L  L LS N   ++   AF  L  L+
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
           ++LDL     + +    F+ L  L  +  NL  N L ++    F D  +L T+ +  N  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWL--NLDYNQLQTLSAGVFDDLTELGTLGLANN-Q 94

Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHC 450
           L  LP  +F   T L  + L GN L  L +  F  L ++  L L+ N L  
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 51/242 (21%), Positives = 84/242 (34%), Gaps = 75/242 (30%)

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
            +   L L S  ++ +++++F  L  L  L+L  N L  +       L+ L  L L+ N 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC 341
            +                                 SLP  +          LT L     
Sbjct: 95  LA---------------------------------SLPLGVFD-------HLTQL----- 109

Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL 401
           D+L L GN   ++ S  F  L                          +L+ + +N N  L
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRL-------------------------TKLKELRLNTN-QL 143

Query: 402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWL-- 457
           + +P+  F   TNL+++SL  N L  +    F  L ++  + L  N   C    +L+L  
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ 203

Query: 458 WI 459
           WI
Sbjct: 204 WI 205

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.2 bits (201), Expect = 7e-18
 Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 99  KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
             LN  +  +  + +   T   +  L  + L+   ++ +  T      +++ L ++  + 
Sbjct: 24  AYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHA 78

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
           T   +    S L +L  L++    +       LS L   SL  L ++ +  +  +     
Sbjct: 79  T---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT--SLTLLDISHSAHDDSILTKIN 133

Query: 219 FTLTNLHTLALSSN-IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL 277
            TL  ++++ LS N  I+ I      TL  L SL++  + +     + +     L  L  
Sbjct: 134 -TLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYA 188

Query: 278 SGNNFSNI 285
                   
Sbjct: 189 FSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 5e-15
 Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 98  NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNN 157
           N L  + ++   ++ L+    +    +K L ++    +           +LE L +   +
Sbjct: 44  NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99

Query: 158 ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSF 217
           +T  +   + S L SL +L + ++   D     ++ LP   ++ + L+ N   T +    
Sbjct: 100 VTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLP--KVNSIDLSYNGAITDIMPL- 155

Query: 218 PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261
             TL  L +L +  + +             L+ L   +  +   
Sbjct: 156 -KTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 13/181 (7%)

Query: 119 KGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178
              K      L  +  + I +        L  + L+  N+T   D        +++ L +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMN---SLTYITLANINVT---DLTGIEYAHNIKDLTI 73

Query: 179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN 238
           +N    +     +S L   +L  L +    + +    +    LT+L  L +S +      
Sbjct: 74  NNIHATNYNP--ISGLS--NLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSI 128

Query: 239 ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA-FKSLFSLK 297
            +   TL  ++S+DLS N         L  L  L +L++  +   +   +  F  L  L 
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLY 187

Query: 298 L 298
            
Sbjct: 188 A 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 9/157 (5%)

Query: 53  VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA 112
           +  I L    ++++   + +   ++ L ++               + L  L I   ++++
Sbjct: 46  LTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTS 102

Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKS 172
                  GL  L  LD+S++       T       +  + LS+N      D     +L  
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI--TDIMPLKTLPE 160

Query: 173 LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI 209
           L+ L +  + + D     + + P   L+ LY     I
Sbjct: 161 LKSLNIQFDGVHDYRG--IEDFP--KLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 14/150 (9%)

Query: 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191
                I  + F+  L+  L   S  NIT        + + SL  + L N  + D+    +
Sbjct: 12  QDNVNIPDSTFKAYLNGLLGQSSTANIT-------EAQMNSLTYITLANINVTDLTG--I 62

Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL 251
                 ++  L +N          +    L+NL  L +    ++     +   L +L  L
Sbjct: 63  EYAH--NIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
           D+S++        +++ L  + ++DLS N 
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG 147

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.6 bits (209), Expect = 2e-17
 Identities = 44/262 (16%), Positives = 85/262 (32%), Gaps = 46/262 (17%)

Query: 78  SLDLSVNKINVLGSHNFEYQNKLLNLNISY---NEISALSKDTFKGLKELKTLDLSYNKI 134
           S +   N I+   +  F   +K     +     NE  +L K+    + +   L L+   +
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71

Query: 135 SVINKTAFRDTLHLELLILSFNNITYFEDS---------------EIFSSLKSLRILKLD 179
           S +          + +L ++ N +    +                 +     SL+ L +D
Sbjct: 72  SSLPDNLPP---QITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVD 128

Query: 180 NNQI------------LDVPNNVLSNLPH--QSLHYLYLNENLIETVLDNSFPFTLTNLH 225
           NNQ+            ++  NN L+ LP    SL  L +  N +        P    +L 
Sbjct: 129 NNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQL-----TFLPELPESLE 183

Query: 226 TLALSSNIISFINESSFVTLR---TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
            L +S+N++  +            T        N ++ IP + +  L     + L  N  
Sbjct: 184 ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPL 242

Query: 283 SNIDSVAFKSLFSLKLVKINLI 304
           S+    +     +        I
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRI 264

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.9 bits (207), Expect = 4e-17
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 39/228 (17%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
              L L+   ++ L  +      ++  L I+ N + +L +        L+ LD   N++ 
Sbjct: 61  FSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLPEL----PASLEYLDACDNRL- 112

Query: 136 VINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI----------- 183
               +   +    L+ L +  N +T   +         L  +  DNNQ+           
Sbjct: 113 ----STLPELPASLKHLDVDNNQLTMLPEL-----PALLEYINADNNQLTMLPELPTSLE 163

Query: 184 -LDVPNNVLSNLPHQ--SLHYLYLNENLIETVLDNSFPFTLTNLHT----LALSSNIISF 236
            L V NN L+ LP    SL  L ++ NL+E++   + P    +            N I+ 
Sbjct: 164 VLSVRNNQLTFLPELPESLEALDVSTNLLESL--PAVPVRNHHSEETEIFFRCRENRITH 221

Query: 237 INESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN 284
           I E+  ++L    ++ L +N LS+   + LS+ +A  +       FS 
Sbjct: 222 IPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.4 bits (172), Expect = 7e-13
 Identities = 53/375 (14%), Positives = 100/375 (26%), Gaps = 104/375 (27%)

Query: 97  QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY----NKISVINKTAFRDTLHLELLI 152
            N  L+ N  YN IS    D F    + +   L        +S++ +           L 
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQ 65

Query: 153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV 212
           L+  N++   D  +   +  L    +  N ++ +P          SL YL   +N +   
Sbjct: 66  LNRLNLSSLPD-NLPPQITVLE---ITQNALISLPELP------ASLEYLDACDNRLS-- 113

Query: 213 LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSAL 272
              + P    +L  L + +N ++ + E        L  ++  NN L+ +P       ++L
Sbjct: 114 ---TLPELPASLKHLDVDNNQLTMLPEL----PALLEYINADNNQLTMLP----ELPTSL 162

Query: 273 VNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFS 332
             L +  N  +                                  LP L  SL       
Sbjct: 163 EVLSVRNNQLT---------------------------------FLPELPESLE------ 183

Query: 333 LTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLET 392
                      LD+S N   ++ +V  +     +  +I               +N     
Sbjct: 184 ----------ALDVSTNLLESLPAVPVR-NHHSEETEIFF--RCR--------EN----- 217

Query: 393 VIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP-LERISFLDLSDNPLHCD 451
                   +  +P  +        ++ L+ N LS                          
Sbjct: 218 -------RITHIPENILS-LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 452 CNLLWLWILVQLQVK 466
                          
Sbjct: 270 DGQQNTLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 13/160 (8%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           L  ++   N++ +L     E    L  L++  N+++ L +      + L+ LD+S N + 
Sbjct: 142 LEYINADNNQLTML----PELPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLLE 193

Query: 136 VINKTAFRDTLHLELLI---LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLS 192
            +     R+    E  I      N IT+  ++    SL     + L++N +       LS
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPEN--ILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
               Q  ++       +     N+    L +  T     N
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 1e-16
 Identities = 47/240 (19%), Positives = 74/240 (30%), Gaps = 39/240 (16%)

Query: 58  LRENRISNVHYTLSFYIE--------LRSLDLSVNKINVLGSHNFEYQNKLL----NLNI 105
           L+E  + N+  T +            L  L+L         +   E Q  L      L+I
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 106 SYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSE 165
           +       S +  +    L TLDLS N                               + 
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPEL---------------------GERGLISAL 195

Query: 166 IFSSLKSLRILKLDNNQILDVPNNVLSNLPH-QSLHYLYLNENLIETVLDNSFPFTLTNL 224
                 +L++L L N  +        +       L  L L+ N +            + L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN 284
           ++L LS   +  + +     L     LDLS N L   P     +L  + NL L GN F +
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLSV---LDLSYNRLDRNP--SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 4e-15
 Identities = 42/242 (17%), Positives = 76/242 (31%), Gaps = 14/242 (5%)

Query: 69  TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD 128
             S    L+ +D   +              +L                   G+  L+ L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSL-----KSLRILKLDNNQI 183
           L   +++        +    +L IL+  N+++       + L       L++L +     
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 184 LDVPNNVLSNLPHQSLHYLYLNENLI---ETVLDNSFPFTLTNLHTLALSSN---IISFI 237
           L+     +   P  +L  L L++N       ++    P     L  LAL +      S +
Sbjct: 162 LNFSCEQVRVFP--ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 238 NESSFVTLRTLHSLDLSNNNLSAIPTKQL-SKLSALVNLDLSGNNFSNIDSVAFKSLFSL 296
             +       L  LDLS+N+L            S L +L+LS      +       L  L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL 279

Query: 297 KL 298
            L
Sbjct: 280 DL 281

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 56/310 (18%), Positives = 92/310 (29%), Gaps = 49/310 (15%)

Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD-VPNNVLSNLPHQSLHYLY 203
              LE L+   +               SL+ L +   +I   +    L  L    L  L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 204 LNEN-LIETVLDNSFPFTLTNLHTLALSSNII----SFINESSFVTLRTLHSLDLSNNNL 258
           L    +  T        T  +L+ L L +       +++ E        L  L ++  + 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 259 SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSL 318
                +Q+    AL  LDLS N       +              L P      Q L+L  
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLIS-----------ALCPLKFPTLQVLALRN 210

Query: 319 PPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS 378
              + + S   +        L+   LDLS N+  +                         
Sbjct: 211 A-GMETPSGVCSALAAARVQLQ--GLDLSHNSLRDA------------------------ 243

Query: 379 IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERI 438
               +     QL ++ ++    LKQ+P  L      L  + L  N L    +    L ++
Sbjct: 244 AGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDE-LPQV 298

Query: 439 SFLDLSDNPL 448
             L L  NP 
Sbjct: 299 GNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 47/272 (17%), Positives = 78/272 (28%), Gaps = 31/272 (11%)

Query: 108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTA-FRDTLHLELLILSFNNIT--YFEDS 164
           N + A   + + G + L+ L    +  + + +      +L L+ L +    I       +
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 165 EIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV---LDNSFPFTL 221
                +  L+ L L+N ++       L       L+ L L      T    L     +  
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA----IPTKQLSKLSALVNLDL 277
             L  L+++       +         L +LDLS+N        I      K   L  L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 278 SGNNFSNIDSVAFKSLFSLK-LVKINLIPN-LDSIDQPLSLSLPPLLLSLSIPLAFSLTP 335
                     V      +   L  ++L  N L       S   P  L S           
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS----------- 257

Query: 336 LGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKL 367
                   L+LS      +       L  L L
Sbjct: 258 --------LNLSFTGLKQVPKGLPAKLSVLDL 281

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 74  IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133
           +  R LDL   KI V+  +     ++   ++ S NEI  L  D F  L+ LKTL ++ N+
Sbjct: 19  VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR 75

Query: 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NV 190
           I  I +   +    L  LIL+ N++    D +  +SLKSL  L +  N + +  +    V
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 135

Query: 191 LSNLPHQSLHYL 202
           +  +P   +  L
Sbjct: 136 IYKVP--QVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVI-NKTAFRDTLHLELLILSFNNITYF 161
           + ++   I   ++  +      + LDL   KI VI N  A  D    + +  S N I   
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLD--QFDAIDFSDNEIRKL 57

Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
           +    F  L+ L+ L ++NN+I  +   +   LP   L  L L  N +  + D     +L
Sbjct: 58  DG---FPLLRRLKTLLVNNNRICRIGEGLDQALP--DLTELILTNNSLVELGDLDPLASL 112

Query: 222 TNLHTLALSSNIIS 235
            +L  L +  N ++
Sbjct: 113 KSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 25/154 (16%)

Query: 175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII 234
           ++KL    I        +N        L L    I  +   +   TL     +  S N I
Sbjct: 1   MVKLTAELIEQAAQ--YTNAV--RDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEI 54

Query: 235 SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV----AF 290
             +    F  LR L +L ++NN +  I       L  L  L L+ N+   +  +    + 
Sbjct: 55  RKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112

Query: 291 KSLFSLKLVK-------------INLIPNLDSID 311
           KSL  L +++             I  +P +  +D
Sbjct: 113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 51  PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
            +   I   +N I  +         L++L ++ N+I  +G    +    L  L ++ N +
Sbjct: 42  DQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 111 SALSK-DTFKGLKELKTLDLSYNKIS 135
             L   D    LK L  L +  N ++
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVT 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 5/140 (3%)

Query: 49  LNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN 108
              E   +      I  +  TLS     + L LS N I  +   +      L  L++  N
Sbjct: 23  TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRN 80

Query: 109 EISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS 168
            I  +  +       L+ L +SYN+I+ ++       ++L +L +S N IT + + +  +
Sbjct: 81  LIKKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 169 SLKSLRILKLDNNQILDVPN 188
           +L  L  L L  N + +   
Sbjct: 138 ALDKLEDLLLAGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 156 NNITYFEDSEIFSSLKSLRI-LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV-- 212
           + I  FE+ +   + ++ ++ L      I  +    LS L      +L L+ N IE +  
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKA--CKHLALSTNNIEKISS 65

Query: 213 LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSAL 272
           L       + NL  L+L  N+I  I     V   TL  L +S N ++++    + KL  L
Sbjct: 66  LSG-----MENLRILSLGRNLIKKIENLDAVA-DTLEELWISYNQIASL--SGIEKLVNL 117

Query: 273 VNLDLSGNNFSNIDSV 288
             L +S N  +N   +
Sbjct: 118 RVLYMSNNKITNWGEI 133

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 58  LRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK-D 116
           L  N I  +    +    L  L +S N+I  L     E    L  L +S N+I+   + D
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEID 134

Query: 117 TFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSS 169
               L +L+ L L+ N +    K     + +   ++    N+   +   +   
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVD 187

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 37  CTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEY 96
            +    ++ P     E     L++  +++          +  +  + + I  +     +Y
Sbjct: 5   VSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQG--IQY 61

Query: 97  QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFN 156
              +  L +  N++  +S    K L  L  L L+ N++  +    F    +L+ L+L  N
Sbjct: 62  LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119

Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS 216
            +       +F  L +L  L L +NQ+  +P  V   L                      
Sbjct: 120 QLQSLP-DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL---------------------- 156

Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
                TNL  L LS N +  + E  F  L  L  L L  N L ++P     +L++L  + 
Sbjct: 157 -----TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211

Query: 277 LSGN 280
           L  N
Sbjct: 212 LHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 10/173 (5%)

Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
              +L    ++        +   ++ +I + ++I   +       L ++R L L  N++ 
Sbjct: 22  IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLH 76

Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT 244
           D+    L  L   +L YL L  N ++++ +  F   LTNL  L L  N +  + +  F  
Sbjct: 77  DIS--ALKELT--NLTYLILTGNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDK 131

Query: 245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
           L  L  L+L++N L ++P     KL+ L  LDLS N   ++    F  L  LK
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 75  ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI 134
            L+ L L  N++  L    F+    L  LN+++N++ +L K  F  L  L  LDLSYN++
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169

Query: 135 SVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
             + +  F D L  L+ L L  N +    D  +F  L SL+ + L +N 
Sbjct: 170 QSLPEGVF-DKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNP 216

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 52/287 (18%), Positives = 97/287 (33%), Gaps = 40/287 (13%)

Query: 36  SCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT-----LSFYIELRSLDLSVNKIN--- 87
             +DA    + + L  + Q + L +  ++          L     L  L+L  N++    
Sbjct: 14  ELSDARWAEL-LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG 72

Query: 88  --VLGSHNFEYQNKLLNLNISYNEIS-----ALSKDTFKGLKELKTLDLSYNKISVINKT 140
              +         K+  L++    ++      LS  T + L  L+ L LS N +      
Sbjct: 73  VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQ 131

Query: 141 AFRDTL-----HLELLILSFNNITYFEDSEIFSSLK---SLRILKLDNNQILDVPNNVLS 192
              + L      LE L L + +++      + S L+     + L + NN I +    VL 
Sbjct: 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191

Query: 193 NL---PHQSLHYLYLNENLIETVLDNSFPFTL---TNLHTLALSSNIIS-----FINESS 241
                    L  L L    + +         +    +L  LAL SN +       +    
Sbjct: 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL 251

Query: 242 FVTLRTLHSLDLSNNNLSAIPTKQLSKL----SALVNLDLSGNNFSN 284
                 L +L +    ++A     L ++     +L  L L+GN   +
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 6e-14
 Identities = 59/278 (21%), Positives = 100/278 (35%), Gaps = 49/278 (17%)

Query: 50  NPEVQTIILRENRISNVHY-----TLSFYIELRSLDLSVNKIN-----VLGSHNFEYQNK 99
           + ++Q + L+   ++         TL     L+ L LS N +      +L     + Q +
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 100 LLNLNISYNEIS-----ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTL-----HLE 149
           L  L + Y  +S      L+    +   + K L +S N I+          L      LE
Sbjct: 144 LEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 150 LLILSFNNIT---YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL---PHQSLHYLY 203
            L L    +T     +   I +S  SLR L L +N++ DV    L      P   L  L+
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 204 LNENLIE--------TVLDNSFPFTLTNLHTLALSSNIIS-----FINESSFVTLRTLHS 250
           + E  I          VL         +L  L+L+ N +       + E+       L S
Sbjct: 263 IWECGITAKGCGDLCRVLRAK-----ESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 251 LDLSNNNLSAIPTKQLSKL----SALVNLDLSGNNFSN 284
           L + + + +A      S +      L+ L +S N   +
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 70/420 (16%), Positives = 138/420 (32%), Gaps = 59/420 (14%)

Query: 75  ELRSLDLSVNKINVLGSHNFEYQNKLLN-LNISYNEIS-----ALSKDTFKGLKELKTLD 128
           +++SLD+   +++           +    + +    ++      +S    +    L  L+
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELN 62

Query: 129 LSYNKIS-----VINKTAFRDTLHLELLILSFNNIT---YFEDSEIFSSLKSLRILKLDN 180
           L  N++       + +     +  ++ L L    +T       S    +L +L+ L L +
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 181 NQILDVPNNVLSNL---PHQSLHYLYLNENLIETVLDNSFPFTL---TNLHTLALSSNII 234
           N + D    +L      P   L  L L    +           L    +   L +S+N I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 235 S-----FINESSFVTLRTLHSLDLSNNNLSAIPTKQLS----KLSALVNLDLSGNNFSNI 285
           +      + +    +   L +L L +  +++   + L       ++L  L L  N   ++
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 286 DSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLD 345
                       L    L P+  S  + L +    +       L   L    +LK   L 
Sbjct: 243 GMAE--------LCPGLLHPS--SRLRTLWIWECGITAKGCGDLCRVLRAKESLK--ELS 290

Query: 346 LSGNNFSNIDSVAF--------KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINE 397
           L+GN   +  +             L SL +   +      S        N  L  + I+ 
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 398 N----MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-----PLERISFLDLSDNPL 448
           N      +++L   L Q  + L+ + L    +S    S           +  LDLS+N L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 67/387 (17%), Positives = 125/387 (32%), Gaps = 61/387 (15%)

Query: 122 KELKTLDLSYNKISVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLK---SLRILK 177
            ++++LD+   ++S          L   +++ L    +T     +I S+L+   +L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 178 LDNNQILDVPNNVLSNL---PHQSLHYLYLNENLIETVLDNSFPFTL---TNLHTLALSS 231
           L +N++ DV  + +      P   +  L L    +          TL     L  L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 232 NIIS-----FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL----SALVNLDLSGNNF 282
           N++       + E        L  L L   +LSA   + L+ +         L +S N+ 
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 283 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCD 342
           +  ++        LK     L        + L L    +       L   +    +L+  
Sbjct: 183 N--EAGVRVLCQGLKDSPCQL--------EALKLESCGVTSDNCRDLCGIVASKASLRE- 231

Query: 343 RLDLSGNNFSNIDSVAFKSLF---SLKLVKINLIPNLDSIDQ-----RAFVDNIQLETVI 394
            L L  N   ++            S +L  + +     +        R       L+ + 
Sbjct: 232 -LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 395 INENM----NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-----PLERISFLDLSD 445
           +  N       + L   L +    L+S+ +K  S +    SHF         +  L +S+
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 446 NPL-------------HCDCNLLWLWI 459
           N L                  L  LW+
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWL 377

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.7 bits (148), Expect = 6e-10
 Identities = 44/252 (17%), Positives = 80/252 (31%), Gaps = 36/252 (14%)

Query: 76  LRSLDLSVNKINVLG----SHNFEYQNKLLNLNISYNEIS-----ALSKDTFKGLKELKT 126
           L +L L    +              +  L  L +  N++       L          L+T
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 127 LDLSYNKISVINKTAFRDTL----HLELLILSFNNITYFEDSEIFSSLK----SLRILKL 178
           L +    I+          L     L+ L L+ N +       +  +L      L  L +
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 179 DNNQILDVPNNVLSNL--PHQSLHYLYLNENLIE----TVLDNSFPFTLTNLHTLALSSN 232
            +        +  S++   ++ L  L ++ N +E      L        + L  L L+  
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 233 IISFINE------SSFVTLRTLHSLDLSNNNLSAIPTKQLSKL-----SALVNLDLSGNN 281
            +S  +       ++ +   +L  LDLSNN L      QL +        L  L L    
Sbjct: 381 DVS--DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438

Query: 282 FSNIDSVAFKSL 293
           +S       ++L
Sbjct: 439 WSEEMEDRLQAL 450

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.5 bits (177), Expect = 6e-14
 Identities = 30/160 (18%), Positives = 42/160 (26%), Gaps = 47/160 (29%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CP  C          CT  G                          + L     L  L +
Sbjct: 1   CPDACCPH-GSSGLRCTRDGALDSL---------------------HHLPGAENLTELYI 38

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
                                       +  L     +GL EL+ L +  + +  +   A
Sbjct: 39  ENQ-----------------------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN 181
           F  T  L  L LSFN +      +    L SL+ L L  N
Sbjct: 76  FHFTPRLSRLNLSFNALESLSW-KTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 71.7 bits (175), Expect = 1e-13
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKS 417
                 +L  + I    +L  ++ R      +L  + I ++  L+ +    F     L  
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSR 84

Query: 418 VSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQ 462
           ++L  N+L  L         +  L LS NPLHC C L WL    +
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.0 bits (155), Expect = 4e-11
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 221 LTNLHTLALSSN-IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
             NL  L + +   +  +       L  L +L +  + L  +          L  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 280 NNFSNIDSVAFKSLFSLKLVKIN 302
           N   ++     + L SL+ + ++
Sbjct: 90  NALESLSWKTVQGL-SLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.2 bits (153), Expect = 7e-11
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 167 FSSLKSLRILKLDNNQIL-DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH 225
               ++L  L ++N Q L  +    L  L    L  L + ++ +  V  ++F F    L 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGE--LRNLTIVKSGLRFVAPDAFHF-TPRLS 83

Query: 226 TLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258
            L LS N +  ++  +   L +L  L LS N L
Sbjct: 84  RLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 7e-11
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 140 TAFRDTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQS 198
                  +L  L +     + + E       L  LR L +  + +  V  +     P   
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTP--R 81

Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
           L  L L+ N +E++          +L  L LS N
Sbjct: 82  LSRLNLSFNALESLSWK--TVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 240 SSFVTLRTLHSLDLSNNN-LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKL 298
                   L  L + N   L  +  + L  L  L NL +  +    +   AF     L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 299 VKINLIPN-LDSIDQPL--SLSLPPLLLS 324
             +NL  N L+S+       LSL  L+LS
Sbjct: 85  --LNLSFNALESLSWKTVQGLSLQELVLS 111

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 23/249 (9%)

Query: 51  PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI 110
           P    + LR   +            L+ + +    +  L     +    L  L ++ N +
Sbjct: 81  PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPL 139

Query: 111 SALSKDTFKGLKELKTLDLSYNK--------ISVINKTAFRDTL-HLELLILSFNNITYF 161
            AL   +   L  L+ L +            ++  + +     L +L+ L L +  I   
Sbjct: 140 RALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL 221
             S   ++L++L+ LK+ N+ +  +    + +L    L  L L            F    
Sbjct: 199 PAS--IANLQNLKSLKIRNSPLSALGPA-IHHL--PKLEELDLRGCTALRNYPPIF-GGR 252

Query: 222 TNLHTLALSSNIISFINE--SSFVTLRTLHSLDLSNN-NLSAIPTKQLSKLSALVNLDLS 278
             L  L L     S +         L  L  LDL    NLS +P   +++L A   + + 
Sbjct: 253 APLKRLILKDC--SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVP 309

Query: 279 GNNFSNIDS 287
            +  + +D 
Sbjct: 310 PHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 36/223 (16%)

Query: 92  HNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151
           H+  + +   NL    +       D     +     D +    +        ++ + ++ 
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA----WRQANSNNPQIE 61

Query: 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQI---------------LDVPNNVLSNLPH 196
             +   +    D    ++      L+L +  +               + +    L  LP 
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD 121

Query: 197 -----QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN---------IISFINESSF 242
                  L  L L  N +   L  S   +L  L  L++ +          + S       
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI 285
             L  L SL L    + ++P   ++ L  L +L +  +  S +
Sbjct: 180 QGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSAL 221

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 3/136 (2%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CP+ C C D      C++ GL+V+P  +  +V  + L  N+ + V   LS Y  L  +DL
Sbjct: 4   CPTECTCLDT--VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
           S N+I+ L + +F    +LL L +SYN +  +   TF GLK L+ L L  N ISV+ + A
Sbjct: 62  SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121

Query: 142 FRDTLHLELLILSFNN 157
           F D   L  L +   N
Sbjct: 122 FNDLSALSHLAI-GAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 8/122 (6%)

Query: 342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMN 400
             L L GN F+ +      +     L  I+L  N + ++  ++F +  QL T+I++ N  
Sbjct: 34  TELYLDGNQFTLVPKE-LSNY--KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-R 89

Query: 401 LKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWL-- 457
           L+ +P + F G  +L+ +SL GN +S +    F  L  +S L +  NPL+CDCN+ WL  
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSD 149

Query: 458 WI 459
           W+
Sbjct: 150 WV 151

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 202 LYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI 261
           LYL+ N   T++         +L  + LS+N IS ++  SF  +  L +L LS N L  I
Sbjct: 36  LYLDGNQF-TLVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 262 PTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLK 297
           P +    L +L  L L GN+ S +   AF  L +L 
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
             L LD NQ   VP   LSN  H  L  + L+ N I T+ + SF   +T L TL LS N 
Sbjct: 34  TELYLDGNQFTLVPK-ELSNYKH--LTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNR 89

Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN 280
           +  I   +F  L++L  L L  N++S +P    + LSAL +L +  N
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
            ++  L L  N  + +        + L  +DLSNN +S +  +  S ++ L+ L LS N 
Sbjct: 31  RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 282 FSNIDSVAFKSLFSLKL 298
              I    F  L SL+L
Sbjct: 90  LRCIPPRTFDGLKSLRL 106

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 7/186 (3%)

Query: 99  KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
           +L  L I++  +S    D    +K L TLD SYN +S     +     +L  +    N I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
           +        S  K    + +  N++        +NL   +L ++ L+ N++E      F 
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---NLAFVDLSRNMLEGDASVLF- 217

Query: 219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDL 277
            +  N   + L+ N ++F +       + L+ LDL NN +   +P + L++L  L +L++
Sbjct: 218 GSDKNTQKIHLAKNSLAF-DLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNV 275

Query: 278 SGNNFS 283
           S NN  
Sbjct: 276 SFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 50/219 (22%), Positives = 80/219 (36%), Gaps = 25/219 (11%)

Query: 147 HLELLILSFNNIT-YFEDSEIFSSLKSLRILKLDNNQIL--DVPNNVLSNLPHQSLHYLY 203
            +  L LS  N+   +      ++L  L  L +     L   +P   ++ L    LHYLY
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQ--LHYLY 107

Query: 204 LNENLIETVLDNSFPFT---LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS- 259
           +        +  + P     +  L TL  S N +S     S  +L  L  +    N +S 
Sbjct: 108 ITHTN----VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 260 AIPTKQLSKLSALVN-LDLSGNNFS-NIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLS 317
           AIP       S L   + +S N  +  I      +  +L L  ++L  N+   D  +   
Sbjct: 164 AIP-DSYGSFSKLFTSMTISRNRLTGKIPP----TFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 318 LPPLLLSLSI---PLAFSLTPLGTLKC-DRLDLSGNNFS 352
                  + +    LAF L  +G  K  + LDL  N   
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 64/237 (27%)

Query: 221 LTNLHTLALSS-NIISFINESSFVTLRTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDLS 278
           L  L+ L +   N +      +   L  LH L +++ N+S AIP   LS++  LV LD S
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFS 133

Query: 279 GNNFS-NIDSVAFKSLFSL-KLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPL 336
            N  S  +      S+ SL  LV I    N       +S ++P            S + L
Sbjct: 134 YNALSGTLPP----SISSLPNLVGITFDGNR------ISGAIPDSY--------GSFSKL 175

Query: 337 GTLKCDRLDLSGNNFS-NIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVII 395
            T     + +S N  +  I      +  +L L  ++L  N              LE    
Sbjct: 176 FTS----MTISRNRLTGKIPP----TFANLNLAFVDLSRN-------------MLEGDA- 213

Query: 396 NENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFP----LERISFLDLSDNPL 448
                           + N + + L  NSL+             + ++ LDL +N +
Sbjct: 214 ---------SVLFGS-DKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNRI 256

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 30/187 (16%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CPSRC C        C   G   VP  +  +                          LDL
Sbjct: 1   CPSRCSCSGT--TVECYSQGRTSVPTGIPAQTT-----------------------YLDL 35

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             N +  L +  F+    L  L +  N++ +L    F  L  L  L+LS N++  +    
Sbjct: 36  ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95

Query: 142 FRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
           F D L  L+ L L+ N +    D  +F  L  L+ L+L  NQ+  VP+ V   L   SL 
Sbjct: 96  F-DKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQ 151

Query: 201 YLYLNEN 207
           Y++L++N
Sbjct: 152 YIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
             L L+ N +  +PN V   L   SL  LYL  N ++++ +  F   LT+L  L LS+N 
Sbjct: 31  TYLDLETNSLKSLPNGVFDEL--TSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLSTNQ 87

Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL 293
           +  +    F  L  L  L L+ N L ++P     KL+ L +L L  N   ++    F  L
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147

Query: 294 FSLKLVKINLIPN 306
            SL+   I L  N
Sbjct: 148 TSLQ--YIWLHDN 158

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.7 bits (175), Expect = 3e-13
 Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 10/195 (5%)

Query: 5   LTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRIS 64
           L  +        L   +          + E     + L+ V       +  +  R   + 
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL--RSKFLL 431

Query: 65  NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKEL 124
                   Y ++R L L+   + VL   + E    + +L++S+N + AL       L+ L
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP-PALAALRCL 488

Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
           + L  S N +  ++     +   L+ L+L  N +      +   S   L +L L  N + 
Sbjct: 489 EVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

Query: 185 DVPN---NVLSNLPH 196
                   +   LP 
Sbjct: 547 QEEGIQERLAEMLPS 561

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 2e-12
 Identities = 47/274 (17%), Positives = 97/274 (35%), Gaps = 27/274 (9%)

Query: 68  YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTL 127
            +  +  +L +  L+           +   +      +  +      +D     ++L   
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRC 354

Query: 128 DLSYNKISVIN----------KTAFRDTLHLELLILSFNNITYF----EDSEIFSSLKSL 173
           +LS  K +V+           +    +   L  +IL    +       E  + FS+LK++
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 174 ---RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS 230
              R   LD+ +   +  N +  + +  +  L+L    +  +        L  +  L LS
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQLLLVTHLDLS 471

Query: 231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA- 289
            N +  +   +   LR L  L  S+N L  +    ++ L  L  L L  N      ++  
Sbjct: 472 HNRLRAL-PPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQP 528

Query: 290 FKSLFSLKLVKI--NLIPNLDSIDQPLSLSLPPL 321
             S   L L+ +  N +   + I + L+  LP +
Sbjct: 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 6e-11
 Identities = 36/201 (17%), Positives = 75/201 (37%), Gaps = 15/201 (7%)

Query: 58  LRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY-----NEISA 112
           L+E    N    L+  + +R+LD  + +   L    F     +  +  +Y     ++   
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQ--YFSTLKAVDPMRAAYLDDLRSKFLL 431

Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKS 172
            +        +++ L L++  ++V+        L +  L LS N +     +   ++L+ 
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA--LAALRC 487

Query: 173 LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN 232
           L +L+  +N + +V    ++NLP   L  L L  N ++         +   L  L L  N
Sbjct: 488 LEVLQASDNALENVDG--VANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

Query: 233 IISFINESSFVTLRTLHSLDL 253
            +             L S+  
Sbjct: 544 SLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 7e-11
 Identities = 48/252 (19%), Positives = 89/252 (35%), Gaps = 30/252 (11%)

Query: 47  IQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINV----------LGSHNFEY 96
              +   +  +L ++R        +   +L   +LSV K  V          L     E 
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPEN 381

Query: 97  QNKLLNLNISYNEISALS--KDTFKGLKELKTLD--------LSYNKISVINKTAFRDTL 146
           +  LL + +    +  L   K+T +    LK +D           +K  + N     +  
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 147 HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNE 206
            + +L L+  ++T          L  +  L L +N++  +P   L+ L  + L  L  ++
Sbjct: 442 DVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPA-LAAL--RCLEVLQASD 495

Query: 207 NLIETVLDNSFPFTLTNLHTLALSSNIISFINE-SSFVTLRTLHSLDLSNNNLSAIPTKQ 265
           N +E V   +    L  L  L L +N +         V+   L  L+L  N+L      Q
Sbjct: 496 NALENVDGVAN---LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

Query: 266 LSKLSALVNLDL 277
                 L ++  
Sbjct: 553 ERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 44/324 (13%), Positives = 98/324 (30%), Gaps = 17/324 (5%)

Query: 113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKS 172
           L +     +     +      +SV           +  L+L  +      +         
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 173 LRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF----TLTNLHTLA 228
              + L +     + + +  +            +  +              T   L    
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355

Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
           LS    + +      + + L  L+  N          +  L  L+    +   FS + +V
Sbjct: 356 LSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 289 AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSG 348
                  L  ++   +     +    +      L    + +   L  L  +    LDLS 
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTH--LDLSH 472

Query: 349 NNFSNIDSVAFKSLFSLKLVKI--NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS 406
           N    +   A  +L  L++++   N + N+D +         +L+ +++  N  L+Q  +
Sbjct: 473 NRLRALPP-ALAALRCLEVLQASDNALENVDGVAN-----LPRLQELLLCNN-RLQQSAA 525

Query: 407 -KLFQGNTNLKSVSLKGNSLSHLE 429
            +       L  ++L+GNSL   E
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 16/269 (5%)

Query: 187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLR 246
             N  S++    L    LN+ L +      +  + +    + L      +  +S+  T  
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA--TDE 349

Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVK--INLI 304
            L   +LS    + +   +L     L  L+           +  ++L  L   K  +   
Sbjct: 350 QLFRCELSVEKSTVLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS 364
             L ++D P+  +    L S  +     L          L L+  + + +     + L  
Sbjct: 409 STLKAVD-PMRAAYLDDLRSKFLLENSVLKMEYADV-RVLHLAHKDLTVLCH--LEQLLL 464

Query: 365 LKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS 424
           +    ++L  N       A      LE +  ++N  L+ +          L+ + L  N 
Sbjct: 465 VT--HLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG--VANLPRLQELLLCNNR 519

Query: 425 LSHLEASH--FPLERISFLDLSDNPLHCD 451
           L    A        R+  L+L  N L  +
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 75  ELRSLDLSVNKINVL-GSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK 133
           +++ L L  ++ N        +   +L  L+     +++++      L +LK L+LS N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNR 75

Query: 134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NV 190
           +S   +       +L  L LS N I      E    L++L+ L L N ++ ++ +   NV
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135

Query: 191 LSNLPHQSLHYL 202
              LP   L YL
Sbjct: 136 FKLLP--QLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.6 bits (137), Expect = 8e-10
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 9/138 (6%)

Query: 119 KGLKELKTLDLSYNKISVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILK 177
           +   ++K L L  ++ +        D    LE L      +T          L  L+ L+
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLE 70

Query: 178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFI 237
           L +N++      +    P  +L +L L+ N I+ +        L NL +L L +  ++ +
Sbjct: 71  LSDNRVSGGLEVLAEKCP--NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 238 N---ESSFVTLRTLHSLD 252
           N   E+ F  L  L  LD
Sbjct: 129 NDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 19/141 (13%)

Query: 188 NNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRT 247
           +  L N     +  L L+ +                L  L+  +  ++ I  ++   L  
Sbjct: 8   HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK 65

Query: 248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV----AFKSLFSLKLVK--- 300
           L  L+LS+N +S        K   L +L+LSGN   ++ ++      ++L SL L     
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

Query: 301 ----------INLIPNLDSID 311
                       L+P L  +D
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 66.7 bits (163), Expect = 4e-13
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 60  ENRISNVHYTLSFYIELRSLDLSVNKINVL-GSHNFEYQNKLLNLNISYNEISALSKDTF 118
           + RI       +    +R L L   K N             L  L++    + ++     
Sbjct: 11  KRRIHLELRNRTPA-AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL 67

Query: 119 KGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL 178
             L +LK L+LS N+I            +L  L LS N +      E    L+ L+ L L
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

Query: 179 DNNQILDVPN---NVLSNLPHQSLHYL 202
            N ++ ++ +   +V   LP   L YL
Sbjct: 128 FNCEVTNLNDYRESVFKLLP--QLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 121 LKELKTLDLSYNKISVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLD 179
              ++ L L   K +            +LE L L    +    +      L  L+ L+L 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELS 79

Query: 180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN- 238
            N+I    + +   LP  +L +L L+ N ++ +        L  L +L L +  ++ +N 
Sbjct: 80  ENRIFGGLDMLAEKLP--NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 239 --ESSFVTLRTLHSLDLSNN 256
             ES F  L  L  LD  + 
Sbjct: 138 YRESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 24/153 (15%)

Query: 176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS 235
           + +     L++ N   + +    L     N+  IE +          NL  L+L +  + 
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTA-----EFVNLEFLSLINVGLI 62

Query: 236 FINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA----FK 291
            +  S+   L  L  L+LS N +         KL  L +L+LSGN   +I ++      +
Sbjct: 63  SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120

Query: 292 SLFSLKLVK-------------INLIPNLDSID 311
            L SL L                 L+P L  +D
Sbjct: 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSF--YIELRSL 79
           CP+ C C        CT  GL+ +P  +      ++L +N +  +     F     L  L
Sbjct: 2   CPAMCHCEGT--TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKL 59

Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           +L  N++  +  + FE  + +  L +  N+I  +S   F GL +LKTL+L  N+IS +  
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

Query: 140 TAFRDTLH-LELLILSFNN 157
            +F + L+ L  L L  +N
Sbjct: 120 GSF-EHLNSLTSLNL-ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 2/106 (1%)

Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
            L LN+N +  +  +     L +L  L L  N ++ I  ++F     +  L L  N +  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
           I  K    L  L  L+L  N  S +   +F+ L SL    +NL  N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT--SLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 342 DRLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENM 399
             L L+ N    I S   F  L  L   K+ L  N L  I+  AF     ++ + + EN 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLV--KLELKRNQLTGIEPNAFEGASHIQELQLGEN- 88

Query: 400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWL- 457
            +K++ +K+F G   LK+++L  N +S +    F  L  ++ L+L+ NP +C+C+L W  
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 458 -WI 459
            W+
Sbjct: 149 EWL 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 50/187 (26%), Positives = 69/187 (36%), Gaps = 31/187 (16%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CPS+C C        C       VP  +    Q                        L L
Sbjct: 13  CPSQCSCSGT--TVDCRSKRHASVPAGIPTNAQ-----------------------ILYL 47

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             N+I  L    F+    L  L +  N++ AL    F  L +L  LDL  N+++V+    
Sbjct: 48  HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107

Query: 142 FRDTL-HLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
           F D L HL+ L +  N +T          L  L  L LD NQ+  +P+     L   SL 
Sbjct: 108 F-DRLVHLKELFMCCNKLTELPRG--IERLTHLTHLALDQNQLKSIPHGAFDRL--SSLT 162

Query: 201 YLYLNEN 207
           + YL  N
Sbjct: 163 HAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 125 KTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL 184
           + L L  N+I+ +    F   ++L+ L L  N +       +F SL  L +L L  NQ+ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLT 101

Query: 185 DVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP---FTLTNLHTLALSSNIISFINESS 241
            +P+ V   L H  L  L++  N +        P     LT+L  LAL  N +  I   +
Sbjct: 102 VLPSAVFDRLVH--LKELFMCCNKLT-----ELPRGIERLTHLTHLALDQNQLKSIPHGA 154

Query: 242 FVTLRTLHSLDLSNN 256
           F  L +L    L  N
Sbjct: 155 FDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
            LYL++N I  +    F  +L NL  L L SN +  +    F +L  L  LDL  N L+ 
Sbjct: 44  ILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 261 IPTKQLSKLSALVNLDLSGN 280
           +P+    +L  L  L +  N
Sbjct: 103 LPSAVFDRLVHLKELFMCCN 122

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 58/340 (17%), Positives = 105/340 (30%), Gaps = 74/340 (21%)

Query: 36  SCTDAGLEVV--PIQLNPEVQTIILRENRISNVH-----YTLSFYIELRSLDLSVNKINV 88
           + T    + V   +  +  V+ I+L  N I           ++   +L   + S      
Sbjct: 15  AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR 74

Query: 89  LGSHNFE----------YQNKLLNLNISYNEI-----SALSKDTFKGLKELKTLDLSYNK 133
           +     E             KL  + +S N         L          L+ L L  N 
Sbjct: 75  VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNG 133

Query: 134 IS-------------VINKTAFRDTLHLELLILSFNNITYFED------SEIFSSLKSLR 174
           +              +      ++   L  +I   N +   E+      ++ F S + L 
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL---ENGSMKEWAKTFQSHRLLH 190

Query: 175 ILKLDNNQILDV-PNNVLSNL--PHQSLHYLYLNENLI---------ETVLDNSFPFTLT 222
            +K+  N I      ++L       Q L  L L +N             +          
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW------P 244

Query: 223 NLHTLALSSNIIS------FINESSFVTLRTLHSLDLSNNNLS-----AIPTKQLSKLSA 271
           NL  L L+  ++S       ++  S +    L +L L  N +       + T    K+  
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304

Query: 272 LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
           L+ L+L+GN FS  D V  +            +  LD ++
Sbjct: 305 LLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 63/343 (18%), Positives = 113/343 (32%), Gaps = 66/343 (19%)

Query: 100 LLNLNISYNEISALS-KDTFKGLKE---LKTLDLSYNKISVINKTAFRDTL----HLELL 151
           +   ++  + I+    K  F  L E   +K + LS N I         + +     LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 152 ILSFNNITYFED---------SEIFSSLKSLRILKLDNNQILDVPNNVLSNL--PHQSLH 200
             S       +D          +       L  ++L +N         L +    H  L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 201 YLYLNENLI------------ETVLDNSFPFTLTNLHTLALSSNIISFINES------SF 242
           +LYL+ N +            + +  N        L ++    N +   N S      +F
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--NGSMKEWAKTF 183

Query: 243 VTLRTLHSLDLSNNNLSAIPTKQ-----LSKLSALVNLDLSGNNFSNIDSVAF-KSLFSL 296
            + R LH++ +  N +     +      L+    L  LDL  N F+++ S A   +L S 
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 297 K-LVKINLIPNL------DSIDQPLSLSLPPLLLSLSI-----------PLAFSL-TPLG 337
             L ++ L   L       ++    S      L +L +            L   +   + 
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303

Query: 338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 380
            L    L+L+GN FS  D V  +            +  LD ++
Sbjct: 304 DLL--FLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 62/342 (18%), Positives = 114/342 (33%), Gaps = 70/342 (20%)

Query: 124 LKTLDLSYNKISVINKTAFRDTL----HLELLILSFNNITYFEDSEIFSSLK---SLRIL 176
           ++   L  + I+  ++ +    L     ++ ++LS N I       +  ++     L I 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF 236
           +  +     V + +   L             L++ +L          LHT+ LS N    
Sbjct: 66  EFSDIFTGRVKDEIPEALRL-----------LLQALLKC------PKLHTVRLSDNAFGP 108

Query: 237 INESSFVTL----RTLHSLDLSNNNLSAIPTKQLSKL-------------SALVNLDLSG 279
             +   +        L  L L NN L      ++++                L ++    
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 280 NNFSNIDSVAFKSLFSL--KLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLG 337
           N   N     +   F     L  + ++ N   I              +   L   L    
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQN--GIRPE----------GIEHLLLEGLAYCQ 216

Query: 338 TLKCDRLDLSGNNFSNIDSVAF-KSLFSLK-LVKINLIPN-LDSIDQRAFVD------NI 388
            LK   LDL  N F+++ S A   +L S   L ++ L    L +    A VD      NI
Sbjct: 217 ELK--VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 389 QLETVIINEN----MNLKQLPSKLFQGNTNLKSVSLKGNSLS 426
            L+T+ +  N      ++ L + + +   +L  + L GN  S
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 41/244 (16%), Positives = 71/244 (29%), Gaps = 52/244 (21%)

Query: 246 RTLHSLDLSNNNLSAIPTKQ----LSKLSALVNLDLSGNNFSNIDSVAF-------KSLF 294
            ++    L  + ++    K     L +  ++  + LSGN      +          K L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 295 SLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNI 354
             +   I      D I + L L            L  +L     L    + LS N F   
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRL------------LLQALLKCPKLH--TVRLSDNAFGPT 109

Query: 355 DSVAFKSLFSL--KLVKINLIPN--------------LDSIDQRAFVDNIQLETVIINEN 398
                    S    L  + L  N               +    +   +   L ++I   N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 399 M----NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF------PLERISFLDLSDNPL 448
                ++K+  +K FQ +  L +V +  N +      H         + +  LDL DN  
Sbjct: 170 RLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 449 HCDC 452
               
Sbjct: 229 THLG 232

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 48/255 (18%), Positives = 94/255 (36%), Gaps = 35/255 (13%)

Query: 76  LRSLDLSVNKINVLGSHNF-----EYQNKLLNLNISYNEIS-----ALSKDTFKGLKELK 125
           + SLDLS+N +  + +             + +LN+S N +       L +        + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 126 TLDLSYNKISVINKTAFRDTL-----HLELLILSFNNITYFEDSEIFSSLK----SLRIL 176
           +L+LS N +S  +      TL      + +L L +N+ +    SE   +      S+  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 177 KLDNNQILDVPNNVLSNL---PHQSLHYLYLNENLIE----TVLDNSFPFTLTNLHTLAL 229
            L  N +    ++ L  +      +++ L L  N +       L         ++ +L L
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203

Query: 230 SSNII-----SFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL----SALVNLDLSGN 280
           S+N++     + +          + SL+L  N L     + L  L      L  + L  +
Sbjct: 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263

Query: 281 NFSNIDSVAFKSLFS 295
              N+     K+L +
Sbjct: 264 IVKNMSKEQCKALGA 278

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 59/384 (15%), Positives = 125/384 (32%), Gaps = 66/384 (17%)

Query: 101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTL-----HLELLILSF 155
           +N  ++ +  S   ++       + +LDLS N +  I+              +  L LS 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 156 NNITYFEDSEIFSSLKS----LRILKLDNNQILDVPNNVLSNL---PHQSLHYLYLNENL 208
           N++ +    E+   L +    +  L L  N +    ++ L         ++  L L  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 209 IE----TVLDNSFPFTLTNLHTLALSSNIIS-----FINESSFVTLRTLHSLDLSNNNLS 259
                 +    +F     ++ +L L  N +       + +        ++SL+L  NNL+
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 260 AIPTKQLSKL-----SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL 314
           +    +L+K      +++ +LDLS N            +     +  ++          L
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI--FSSIPNHV--------VSL 230

Query: 315 SLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 374
           +L L  L       L      L  L+   + L  +   N+     K+L +          
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQ--TVYLDYDIVKNMSKEQCKALGA---------- 278

Query: 375 NLDSIDQRAFVDNIQLETVIINEN----MNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA 430
                   AF +  ++  V  N       +   + + + + +      SL    L   + 
Sbjct: 279 --------AFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQK 330

Query: 431 SHFPLERISF------LDLSDNPL 448
               +E ++          +  PL
Sbjct: 331 HQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 37/242 (15%), Positives = 85/242 (35%), Gaps = 34/242 (14%)

Query: 76  LRSLDLSVNKINVLG----SHNFEYQN-KLLNLNISYNEIS-----ALSKDTFKGLKELK 125
           + SL+LS N ++                 +  L++ +N+ S        +        + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 126 TLDLSYNKISVINKTAFRDTL-----HLELLILSFNNITYFEDSEIFSSLK----SLRIL 176
           +L+L  N + + +       L     ++  L L  NN+     +E+   L     S+  L
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201

Query: 177 KLDNNQILDVPNNVLSNL---PHQSLHYLYLNENLIETV----LDNSFPFTLTNLHTLAL 229
            L  N +       L+ +       +  L L  N +       L      +L +L T+ L
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD-SLKHLQTVYL 260

Query: 230 SSNIISFINE-------SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF 282
             +I+  +++       ++F  ++ +  +D +   +    +  +S L   ++      + 
Sbjct: 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSL 320

Query: 283 SN 284
            N
Sbjct: 321 LN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 20/130 (15%)

Query: 76  LRSLDLSVNKINVLG----SHNFEYQNKLLNLNISYNEISALSKDTFKGLKE-------L 124
           + SL+L +N ++           +    L  + + Y+ +  +SK+  K L         +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 125 KTLDLSYNKISVINKTAFRDTL-----HLELLILSFNNITY----FEDSEIFSSLKSLRI 175
             +D +  +I   +     + +       ++  L    + +      + E  +    LR 
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346

Query: 176 LKLDNNQILD 185
                  +L+
Sbjct: 347 SIQTCKPLLE 356

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 44/126 (34%)

Query: 413 TNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWL--WILVQLQVKSTM 469
            +   + L GN+L+ L       L  +    L  NP  CDC L+ L  W+          
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWL---------- 80

Query: 470 ETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVP 529
                                                    +L+C +PP ++G  +  + 
Sbjct: 81  -------------------------------AGRPERAPYRDLRCVAPPALRGRLLPYLA 109

Query: 530 ENSVHC 535
           E+ +  
Sbjct: 110 EDELRA 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 85/530 (16%), Positives = 161/530 (30%), Gaps = 159/530 (30%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDS--EIFSSLKSLRILKLDN 180
           E       Y  I  + + AF D            +    +D    I S        K + 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNF----------DCKDVQDMPKSILS--------KEEI 51

Query: 181 NQILDVPNNVLSNLPHQSLHYLYL-----NENL----IETVLDNSFPFTLTNLHTLALSS 231
           + I+   + V           L+       E +    +E VL  ++ F ++ + T     
Sbjct: 52  DHIIMSKDAV------SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT----E 101

Query: 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIP-----TKQLSKL-SALVNLDLSGNNF--- 282
                +    ++  R      L N+N           +   KL  AL+ L  + N     
Sbjct: 102 QRQPSMMTRMYIEQRD----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 283 -----------SNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAF 331
                          S   +     K+  +NL  N +S +     ++  +L  L   +  
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPE-----TVLEMLQKLLYQIDP 211

Query: 332 SLTPLGTLKCDRLDLSGNNFSNIDSV--AFKSLFSLKLVKINLIPNLDSI-DQR---AFV 385
           +          R D S N    I S+    + L   K  +  L+  L ++ + +   AF 
Sbjct: 212 NW-------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAF- 262

Query: 386 DNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSD 445
            N+  + ++                  T  K V+   + LS    +H  L+  S     D
Sbjct: 263 -NLSCKILLT-----------------TRFKQVT---DFLSAATTTHISLDHHSMTLTPD 301

Query: 446 NPLHCDCNLL--WLWILVQ---LQVKST--METTTVAYEMTSNTSISPGTTTEAQRVDRI 498
                  +LL  +L    Q    +V +T     + +A E   +      T    + V+  
Sbjct: 302 EVK----SLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIRD---GLATWDNWKHVN-C 352

Query: 499 IKNNHSLTIVLNNLKCSSPPDIKGL-EVKAV-PENSVHCESNTMLYVLSFMLLLLSSGVI 556
            K    +   LN L+   P + + + +  +V P +  H                + + ++
Sbjct: 353 DKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPS-AH----------------IPTILL 392

Query: 557 CILMYFIYRKRALWKNKINR------NLKHQSSYVDNCMNSHPTPILMLY 600
            +          +W + I        N  H+ S V+         I  +Y
Sbjct: 393 SL----------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 42/245 (17%), Positives = 96/245 (39%), Gaps = 60/245 (24%)

Query: 2   NYF-LTCIFLILALTKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRE 60
           N F L+C   IL  T+  K +        D    A+ T   L+   + L P+ +   L  
Sbjct: 260 NAFNLSC--KILLTTR-FKQV-------TDFLSAATTTHISLDHHSMTLTPD-EVKSL-- 306

Query: 61  NRISNVHYTLSFYIELRSLDL-----SVN--KINVLGSHNFEYQNKLLN-LNISYNEISA 112
                    L  Y++ R  DL     + N  +++++     +      N  +++ ++++ 
Sbjct: 307 ---------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 113 LSKDTFKGLK--ELKTLDLSYNKISVINKTAFRDTLHLELLILSF--NNITYFEDSEIFS 168
           + + +   L+  E + +   ++++SV     F  + H+  ++LS    ++   +   + +
Sbjct: 358 IIESSLNVLEPAEYRKM---FDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 169 SLKSLRILKLDNNQ----ILDV------PNNVLSNLPHQSL--HYL----YLNENLIETV 212
            L    +++    +    I  +             L H+S+  HY     + +++LI   
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPY 468

Query: 213 LDNSF 217
           LD  F
Sbjct: 469 LDQYF 473

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 45/186 (24%), Positives = 67/186 (36%), Gaps = 52/186 (27%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CPSRC C   ++   C   GL  VP  +                             L+L
Sbjct: 1   CPSRCSCSGTEIR--CNSKGLTSVPTGIPSSAT-----------------------RLEL 35

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             NK+  L    F+   +L  L++S N+I +L    F  L +L  L L  NK+  +    
Sbjct: 36  ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN-- 93

Query: 142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHY 201
                                   +F  L  L+ L LD NQ+  VP+ +   L   SL  
Sbjct: 94  -----------------------GVFDKLTQLKELALDTNQLKSVPDGIFDRL--TSLQK 128

Query: 202 LYLNEN 207
           ++L+ N
Sbjct: 129 IWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 3/106 (2%)

Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
            L L  N ++++    F   LT L  L+LS N I  + +  F  L  L  L L  N L +
Sbjct: 32  RLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 261 IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPN 306
           +P     KL+ L  L L  N   ++    F  L SL+  KI L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ--KIWLHTN 134

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 39/237 (16%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           L +      K+  LG       ++LL+    + E       + + L  L+ L+L+  +++
Sbjct: 28  LENAQAIKKKLGKLGRQVLP-PSELLDHLFFHYEFQNQRF-SAEVLSSLRQLNLAGVRMT 85

Query: 136 VINKTAFRDTLH-----LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV 190
            +  T     L      L+ + L+   +       +       R L L  N +       
Sbjct: 86  PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145

Query: 191 LSNL---PHQSLHYLYLNENLI---------ETVLDNSFPFTLTNLHTLALSSNIISFIN 238
           L +L       +  L L+ N +         E +  N      T++  L+L    +    
Sbjct: 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN------TSVTHLSLLHTGLG--- 196

Query: 239 ESSFVTL-------RTLHSLDLSNNNLSAIPTKQLSKL----SALVNLDLSGNNFSN 284
           +     L       R L  L+++ N         L++      +L  L L  N  S+
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 44/304 (14%), Positives = 90/304 (29%), Gaps = 52/304 (17%)

Query: 76  LRSLDLSVNKINVLG--------SHNFEYQNKLLNLNISYNEISALS-KDTFKGLKELKT 126
           LR L+L+  ++  +               ++ L  +N++  ++     +         + 
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSG---RHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 127 LDLSYNKISVINKTAFRDTL-----HLELLILSFNNITYFEDSEIFSSLK---SLRILKL 178
           L L  N +        RD L      +  L LS N +T    + +   L    S+  L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 179 DNNQILDVPNNVLSNL--PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF 236
            +  + D    +L+     ++ L  L +  N               +   LAL+      
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA------------GDTAALALARAARE- 237

Query: 237 INESSFVTLRTLHSLDLSNNNLSAIPTKQLSK----LSALVNLDLSGNNFSNIDSVAFKS 292
                     +L  L L  N LS+   + L            + +S    + +       
Sbjct: 238 --------HPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVI 289

Query: 293 LFS-LKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFS--LTPLGTLKCDRLDLSGN 349
           L    + +       +    + L   L     +   P   +  L   G ++   L     
Sbjct: 290 LSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVR--ALLEQLG 347

Query: 350 NFSN 353
           +  +
Sbjct: 348 SSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 31/232 (13%), Positives = 62/232 (26%), Gaps = 39/232 (16%)

Query: 76  LRSLDLSVNKI-----NVLGSHNFEYQNKLLNLNISYNEISALS-KDTFKGLKE---LKT 126
            R L L +N +       L       Q ++  L +S N ++A       +GL     +  
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 127 LDLSYNKISVINKTAFRDTL----HLELLILSFNNITYFEDSEIFSSLK---SLRILKLD 179
           L L +  +           L     L+ L +++N         +  + +   SL +L L 
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 180 NNQILDVPNNVLS-----NLPHQSLHYLYLNENLIE--------------TVLDNSFPFT 220
            N++      VL            +         +                  D +    
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQR 307

Query: 221 LTNLHTLALSSNIISFINESSFVTL----RTLHSLDLSNNNLSAIPTKQLSK 268
              L    L  +  + +N      L      + +L     +  +        
Sbjct: 308 HLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHP 359

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 49/293 (16%), Positives = 99/293 (33%), Gaps = 26/293 (8%)

Query: 157 NITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE---TVL 213
            +   +   +     SL++L + N +I        +        Y+Y+   +     + +
Sbjct: 35  KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP--NGKFYIYMANFVPAYAFSNV 92

Query: 214 DNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALV 273
            N        L  + LS  I + I +++F     L    +       +  + L+     +
Sbjct: 93  VNGVTKGKQTLEKVILSEKIKN-IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAI 151

Query: 274 NLDLS----GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID--------QPLSLSLPPL 321
            + L         +  +  AF     L+      +  +  ++        QP  ++   +
Sbjct: 152 FIPLGSSDAYRFKNRWEHFAFIEGEPLE--TTIQVGAMGKLEDEIMKAGLQPRDINFLTI 209

Query: 322 LLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQ 381
              L     F L          LD+S  N + I    F     L  +K+    NL +I Q
Sbjct: 210 EGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP--HNLKTIGQ 266

Query: 382 RAFVDNIQLE-TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF 433
           R F +  +L  T+ +    ++  +    F G  NL+ V   G+ ++ L    F
Sbjct: 267 RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 51/330 (15%), Positives = 102/330 (30%), Gaps = 64/330 (19%)

Query: 76  LRSLDLSVNKI----NVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY 131
           L+ LD+S  +I       G++        +   +     S +     KG + L+ + LS 
Sbjct: 51  LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS- 109

Query: 132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL 191
            KI  I   AF+   +L++  +            +  S+ ++ I           P    
Sbjct: 110 EKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI-----------PLGSS 158

Query: 192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF---VTLRTL 248
                                   +F      L T      +   + +      +  R +
Sbjct: 159 DAY------------RFKNRWEHFAF-IEGEPLETTIQVGAMGK-LEDEIMKAGLQPRDI 204

Query: 249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLD 308
           + L +     +A        +  LV+LD+S  N + I    F     L  +K+    NL 
Sbjct: 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP--HNLK 262

Query: 309 SIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLS---GNNFSNIDSVAFKSLFSL 365
           +I Q                  FS        C RL  +     + + I+  AF    +L
Sbjct: 263 TIGQ----------------RVFS-------NCGRLAGTLELPASVTAIEFGAFMGCDNL 299

Query: 366 KLVKINLIPN-LDSIDQRAFVDNIQLETVI 394
           +   +    + + ++    F + +  + + 
Sbjct: 300 R--YVLATGDKITTLGDELFGNGVPSKLIY 327

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 27/106 (25%)

Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
            L ++ N+I+ L    F  L  L+ L  + NK++ I                        
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI------------------------ 72

Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
             + +F  L  L  L L++N +  +P     NL  +SL ++YL  N
Sbjct: 73  -PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL--KSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 25/121 (20%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CPS+C C   +   +C +  L  VP                 + +          + L L
Sbjct: 6   CPSQCSC--DQTLVNCQNIRLASVP-----------------AGIPTD------KQRLWL 40

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
           + N+I  L    F++   L  L  + N+++A+    F  L +L  LDL+ N +  I + A
Sbjct: 41  NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100

Query: 142 F 142
           F
Sbjct: 101 F 101

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 28/76 (36%), Positives = 41/76 (53%)

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
           T+   L L++N I+ +    F  L  L  L  ++N L+AIPT    KL+ L  LDL+ N+
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 282 FSNIDSVAFKSLFSLK 297
             +I   AF +L SL 
Sbjct: 93  LKSIPRGAFDNLKSLT 108

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 27/106 (25%)

Query: 102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF 161
            L +  N+I+ L    F  L +L  LDL  N+++V+                        
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL------------------------ 69

Query: 162 EDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
             + +F  L  L  L L++NQ+  +P     NL  +SL +++L  N
Sbjct: 70  -PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL--KSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 25/121 (20%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDL 81
           CPS+C C        C+   L  VP                 + +  T       + L L
Sbjct: 3   CPSQCSCSGT--TVDCSGKSLASVP-----------------TGIPTT------TQVLYL 37

Query: 82  SVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA 141
             N+I  L    F+   +L  L++  N+++ L    F  L +L  L L+ N++  I + A
Sbjct: 38  YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97

Query: 142 F 142
           F
Sbjct: 98  F 98

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 27/76 (35%), Positives = 35/76 (46%)

Query: 222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNN 281
           T    L L  N I+ +    F  L  L  LDL NN L+ +P     KL+ L  L L+ N 
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 282 FSNIDSVAFKSLFSLK 297
             +I   AF +L SL 
Sbjct: 90  LKSIPRGAFDNLKSLT 105

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN 207
             L+  ++        +EI ++L+ L+ +      + D+  + L+      L  L L+  
Sbjct: 89  FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD-- 146

Query: 208 LIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLS 267
                      FT   L ++                  R + +L +  ++ S    K L 
Sbjct: 147 -------KCSGFTTDGLLSIVTH--------------CRKIKTLLMEESSFSEKDGKWLH 185

Query: 268 KLSA----LVNLDLSGNNFSNIDSVAFKSLF----SLKLVKINLIPNLDSIDQPLSLSLP 319
           +L+     L  L+     F+ I     +++     SL  VK+     L+ +    + +  
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245

Query: 320 PLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSL--KLVKINL 372
                 S+     +            L     S +       LF    ++ K++L
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 14/142 (9%)

Query: 50  NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE 109
           +   Q + L+  R        +  + L         + ++     E   +LL+LN+S N 
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE----ENIPELLSLNLSNNR 181

Query: 110 ISALS--KDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFED---- 163
           +  L       +    LK L+LS N++    +      L LE L L  N++         
Sbjct: 182 LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQST 241

Query: 164 --SEIFSSLKSLRILKLDNNQI 183
             S I      L   +LD +++
Sbjct: 242 YISAIRERFPKLL--RLDGHEL 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	608
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.96
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.92
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.91
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.88
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.85
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.81
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.76
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.71
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.7
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.6
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.51
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.08
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.58
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	93.17
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	89.16

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-53  Score=487.76  Aligned_cols=522  Identities=23%  Similarity=0.293  Sum_probs=343.8

Q ss_pred             CceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCC-CCcccCcccccccccccE
Q psy3330          25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVN-KINVLGSHNFEYQNKLLN  102 (608)
Q Consensus        25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n-~l~~i~~~~f~~l~~L~~  102 (608)
                      .|.|.  ...++|++.+++.||. +|+++++|+|++|.++.++ .+|.++++|++|+|++| .+..+++.+|+++++|++
T Consensus         1 ~C~~~--~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~   77 (844)
T 3j0a_A            1 SCSFD--GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI   77 (844)
T ss_dssp             CCBTT--TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred             CceEe--ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence            36664  4789999999999999 9999999999999999875 58999999999999999 566788889999999999


Q ss_pred             EEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChh--hhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC
Q psy3330         103 LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT--AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN  180 (608)
Q Consensus       103 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  180 (608)
                      |+|++|.++.+.+++|.++++|++|+|++|.+++..+.  .|.++++|++|++++|.+.+...+..|+++++|++|++++
T Consensus        78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~  157 (844)
T 3j0a_A           78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS  157 (844)
T ss_dssp             EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred             EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence            99999999999889999999999999999999874333  4889999999999999998876446789999999999999


Q ss_pred             CCCCCCCcccccCC------------------------------------------------------------------
Q psy3330         181 NQILDVPNNVLSNL------------------------------------------------------------------  194 (608)
Q Consensus       181 n~l~~~~~~~~~~l------------------------------------------------------------------  194 (608)
                      |.+..+.+..+..+                                                                  
T Consensus       158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~  237 (844)
T 3j0a_A          158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI  237 (844)
T ss_dssp             SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred             CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence            88765433222110                                                                  


Q ss_pred             --------------------------CCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCcc
Q psy3330         195 --------------------------PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTL  248 (608)
Q Consensus       195 --------------------------~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  248 (608)
                                                ...+++.|++++|.+.+..+..|.. +++|+.|++++|.++++.+..|.++++|
T Consensus       238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L  316 (844)
T 3j0a_A          238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYNKINKIADEAFYGLDNL  316 (844)
T ss_dssp             CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred             cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence                                      0023555555555555555555665 7777777777777777777777777888


Q ss_pred             CEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCC------------Cccccc
Q psy3330         249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI------------DQPLSL  316 (608)
Q Consensus       249 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~------------~~~~~~  316 (608)
                      ++|++++|+++++++..|.++++|+.|++++|.++.+++.+|..+++|+.|+++++.- ..+            .+.+. 
T Consensus       317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~L~~L~l~~N~l~-  394 (844)
T 3j0a_A          317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIHFIPSIPDIFLSGNKLV-  394 (844)
T ss_dssp             CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS-CCCSSCCSCSEEEEESCCCC-
T ss_pred             CEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC-CcccCCCCcchhccCCCCcc-
Confidence            8888888888777767777888888888888888777777777788888888765431 110            01100 


Q ss_pred             CCchhhhcc-----c---------------ccc-------------c-cccCCCCCceecEEecCCCCCCC-----cChh
Q psy3330         317 SLPPLLLSL-----S---------------IPL-------------A-FSLTPLGTLKCDRLDLSGNNFSN-----IDSV  357 (608)
Q Consensus       317 ~lp~~~~~~-----~---------------~~~-------------~-~~~~~~~~~~l~~L~ls~n~l~~-----~~~~  357 (608)
                      .+|......     +               ++.             . .........+++.|++++|.+++     ..+.
T Consensus       395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~  474 (844)
T 3j0a_A          395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD  474 (844)
T ss_dssp             CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred             cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence            111110000     0               000             0 00000111233444444444432     2223


Q ss_pred             hhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCC
Q psy3330         358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLER  437 (608)
Q Consensus       358 ~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~  437 (608)
                      .|.++++|+.|+++. +.++.+++..|.++++|++|+|++|+ ++.+|...|.  ++|+.|+|++|+|+.+++..+  .+
T Consensus       475 ~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~  548 (844)
T 3j0a_A          475 VFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VS  548 (844)
T ss_dssp             CSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEESCC-CSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SS
T ss_pred             hhcCcccccEEECCC-CcccccChhHccchhhhheeECCCCC-CCccChhhhh--ccccEEECCCCcCCCCChhHh--CC
Confidence            455566666666665 55666666666666666666666665 5556655444  566666666666666555443  47


Q ss_pred             CCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCC
Q psy3330         438 ISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSP  517 (608)
Q Consensus       438 L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p  517 (608)
                      |+.+++++|||.|+|++.||..|.+...                                     ..+.+.+....|.+|
T Consensus       549 L~~l~l~~Np~~C~c~~~~f~~~~~~~~-------------------------------------~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          549 LSVLDITHNKFICECELSTFINWLNHTN-------------------------------------VTIAGPPADIYCVYP  591 (844)
T ss_dssp             CCEEEEEEECCCCSSSCCSHHHHHHHTT-------------------------------------TTTCCCGGGCCCSSC
T ss_pred             cCEEEecCCCcccccccHHHHHHHHhcC-------------------------------------cccccccccCccCCc
Confidence            8999999999999999999999987321                                     112234567899999


Q ss_pred             CcccCCcccccCCCccccCCcch-----hHHHHHHHHHHHHHHhhee---------eEeehhHHHHhHHHhhc-Cccccc
Q psy3330         518 PDIKGLEVKAVPENSVHCESNTM-----LYVLSFMLLLLSSGVICIL---------MYFIYRKRALWKNKINR-NLKHQS  582 (608)
Q Consensus       518 ~~~~g~~~~~~~~~~~~C~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~  582 (608)
                      +.++|.++.+++..  .|.....     +.++++.++++++++++++         .+|++++.+.|...+.+ ..+.+.
T Consensus       592 ~~~~g~~l~~~~~~--~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~  669 (844)
T 3j0a_A          592 DSFSGVSLFSLSTE--GCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMY  669 (844)
T ss_dssp             SSSCSCCTTTCCCC--CC----------CHHHHHHHHHHHHHHHTTTSHHHHC----------------CCCGGGSSSCC
T ss_pred             hhhCCCccccCccc--cCCchhhccccceehhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhccccccccccce
Confidence            99999999888765  4865321     1111111111111111111         11222223333322222 223456


Q ss_pred             ccccc--cccCCCcceEE
Q psy3330         583 SYVDN--CMNSHPTPILM  598 (608)
Q Consensus       583 ~~~~~--~~~~~~~~~~~  598 (608)
                      .| ||  ||+++|++||+
T Consensus       670 ~y-d~fisy~~~d~~~v~  686 (844)
T 3j0a_A          670 KY-DAYLCFSSKDFTWVQ  686 (844)
T ss_dssp             CC-SEEEECCSTTHHHHH
T ss_pred             ec-cEEEEeeCCcHHHHH
Confidence            78 99  99999999983

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.3e-51  Score=453.44  Aligned_cols=472  Identities=22%  Similarity=0.285  Sum_probs=337.6

Q ss_pred             CCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330          21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNK   99 (608)
Q Consensus        21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~   99 (608)
                      .|+.+|.|......|+|++.++++||.++|+++++|+|++|+|+.+++ +|.++++|++|+|++|+|+.+++++|+++++
T Consensus        22 ~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~  101 (635)
T 4g8a_A           22 ESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH  101 (635)
T ss_dssp             ---CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCC
Confidence            355678887777899999999999999999999999999999999985 7999999999999999999999999999999


Q ss_pred             ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEcc
Q psy3330         100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLD  179 (608)
Q Consensus       100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  179 (608)
                      |++|+|++|+|+.+++++|.++++|++|+|++|+++++++..|+++++|++|++++|.++.+..+..+..+++|++|+++
T Consensus       102 L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             CCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999887657889999999999999


Q ss_pred             CCCCCCCCcccccCCCC--CCceEEEccCCCCccccCCCccc--------------------------------------
Q psy3330         180 NNQILDVPNNVLSNLPH--QSLHYLYLNENLIETVLDNSFPF--------------------------------------  219 (608)
Q Consensus       180 ~n~l~~~~~~~~~~l~~--~~L~~L~L~~n~l~~~~~~~~~~--------------------------------------  219 (608)
                      +|+++++++..+..+..  .....++++.|.++.+.+..+..                                      
T Consensus       182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  261 (635)
T 4g8a_A          182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  261 (635)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             CccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence            99998887665432210  11234444444443332222110                                      


Q ss_pred             ------------------------------------------cCCCccEEEccCCCCCccCcccccCCCccCEEeccCCc
Q psy3330         220 ------------------------------------------TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN  257 (608)
Q Consensus       220 ------------------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  257 (608)
                                                                ...+++.+.+.++.+..+.  .+....+++.|++.+|.
T Consensus       262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~  339 (635)
T 4g8a_A          262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCK  339 (635)
T ss_dssp             TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCE
T ss_pred             ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhccccc
Confidence                                                      0111222222222221111  12222344444444444


Q ss_pred             CCCCChh-------------------hhhCCCCCCEEeccCCCCCcc--ChhhhCCCCCCceeeccCCCC----------
Q psy3330         258 LSAIPTK-------------------QLSKLSALVNLDLSGNNFSNI--DSVAFKSLFSLKLVKINLIPN----------  306 (608)
Q Consensus       258 l~~l~~~-------------------~~~~l~~L~~L~Ls~N~l~~~--~~~~f~~l~~L~~L~l~~~~~----------  306 (608)
                      +..++..                   ....+++|+.|++++|.+...  .+..+..+.+|+.+++..+..          
T Consensus       340 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l  419 (635)
T 4g8a_A          340 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL  419 (635)
T ss_dssp             ESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTC
T ss_pred             ccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccc
Confidence            3332211                   123456677777777766532  233344455555555533210          


Q ss_pred             --CCC---CCcccccCCchh-hh--------cc---ccccccccCCCCCceecEEecCCCCC-CCcChhhhccccccccc
Q psy3330         307 --LDS---IDQPLSLSLPPL-LL--------SL---SIPLAFSLTPLGTLKCDRLDLSGNNF-SNIDSVAFKSLFSLKLV  368 (608)
Q Consensus       307 --l~~---~~~~~~~~lp~~-~~--------~~---~~~~~~~~~~~~~~~l~~L~ls~n~l-~~~~~~~~~~l~~L~~l  368 (608)
                        +..   ..+......+.. +.        ..   .+.............++.|++++|.+ .++.+..|..+++|+.|
T Consensus       420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L  499 (635)
T 4g8a_A          420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  499 (635)
T ss_dssp             TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence              000   000000000000 00        00   00001111112233568999999975 45778889999999999


Q ss_pred             ccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CC-CCCCEEEccCC
Q psy3330         369 KINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PL-ERISFLDLSDN  446 (608)
Q Consensus       369 ~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l-~~L~~L~L~~N  446 (608)
                      +++. ++++.+.+.+|.++++|++|+|++|+ +..++...|.++++|++|||++|+|+++++..+ .+ ++|+.|+|++|
T Consensus       500 ~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          500 DLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             ECTT-SCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred             ECCC-CccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence            9998 79999999999999999999999997 899998889999999999999999999887765 55 68999999999


Q ss_pred             ccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCccc
Q psy3330         447 PLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVK  526 (608)
Q Consensus       447 ~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~  526 (608)
                      ||.|||++.||..|++...                                      ....+...++|++|++++|+++.
T Consensus       578 p~~C~C~~~~~~~wl~~~~--------------------------------------~~~~~~~~~~C~~P~~~~g~~l~  619 (635)
T 4g8a_A          578 DFACTCEHQSFLQWIKDQR--------------------------------------QLLVEVERMECATPSDKQGMPVL  619 (635)
T ss_dssp             CBCCSGGGHHHHHHHHHTT--------------------------------------TTBSCGGGCBBCSSTTTTTCBGG
T ss_pred             CCcccCCcHHHHHHHHhCC--------------------------------------CccCCCCCceeCCchHHCCCEee
Confidence            9999999999999998431                                      11223457899999999999999


Q ss_pred             ccCCCccccCC
Q psy3330         527 AVPENSVHCES  537 (608)
Q Consensus       527 ~~~~~~~~C~~  537 (608)
                      +++   ++|+.
T Consensus       620 ~~~---~~C~~  627 (635)
T 4g8a_A          620 SLN---ITCQM  627 (635)
T ss_dssp             GCC---CCC--
T ss_pred             eec---cCCCC
Confidence            884   56865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.1e-52  Score=460.13  Aligned_cols=463  Identities=23%  Similarity=0.266  Sum_probs=339.5

Q ss_pred             CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEE
Q psy3330          25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL  103 (608)
Q Consensus        25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L  103 (608)
                      +|.|......++|++.+++.+|..+|+++++|++++|.++.+++ .|.++++|++|++++|.++.+++.+|.++++|++|
T Consensus         6 ~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A            6 PCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence            47776566789999999999999999999999999999999876 89999999999999999999999999999999999


Q ss_pred             EccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330         104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI  183 (608)
Q Consensus       104 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  183 (608)
                      +|++|.++.+++.+|.++++|++|++++|.++.+++..|+++++|++|++++|.+.+...|..|+++++|++|++++|++
T Consensus        86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            99999999998899999999999999999999998888999999999999999998754478899999999999999998


Q ss_pred             CCCCcccccCCCC-------------------------CCceEEEccCCCCc----------------------------
Q psy3330         184 LDVPNNVLSNLPH-------------------------QSLHYLYLNENLIE----------------------------  210 (608)
Q Consensus       184 ~~~~~~~~~~l~~-------------------------~~L~~L~L~~n~l~----------------------------  210 (608)
                      +++++..+..+..                         .+|+.|++++|.+.                            
T Consensus       166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             eecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            8776543322210                         12334444443321                            


Q ss_pred             -----------------------------------------------------cccCCCccccCCCccEEEccCCCCCcc
Q psy3330         211 -----------------------------------------------------TVLDNSFPFTLTNLHTLALSSNIISFI  237 (608)
Q Consensus       211 -----------------------------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~  237 (608)
                                                                           .++  .+.. +++|+.|++++|.+..+
T Consensus       246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~-~~~L~~L~l~~n~l~~l  322 (606)
T 3vq2_A          246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPK-HFKWQSLSIIRCQLKQF  322 (606)
T ss_dssp             CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCT-TCCCSEEEEESCCCSSC
T ss_pred             cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccc-cccCCEEEcccccCccc
Confidence                                                                 100  1121 23444444444443322


Q ss_pred             C-------------------cccccCCCccCEEeccCCcCCCCC--hhhhhCCCCCCEEeccCCCCCccChhhhCCCCCC
Q psy3330         238 N-------------------ESSFVTLRTLHSLDLSNNNLSAIP--TKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSL  296 (608)
Q Consensus       238 ~-------------------~~~~~~l~~L~~L~Ls~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L  296 (608)
                      +                   +..+..+++|++|++++|++++++  +..+..+++|+.|++++|.+++++ ..|..+++|
T Consensus       323 p~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L  401 (606)
T 3vq2_A          323 PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEEL  401 (606)
T ss_dssp             CCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTC
T ss_pred             ccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCC
Confidence            1                   123456678888888888887763  467888888999999988888876 567888888


Q ss_pred             ceeeccCCCCCCCCCcccccCCchhhhcc-----ccccccccCCCCCceecEEecCCCCCCC-cChhhhccccccccccc
Q psy3330         297 KLVKINLIPNLDSIDQPLSLSLPPLLLSL-----SIPLAFSLTPLGTLKCDRLDLSGNNFSN-IDSVAFKSLFSLKLVKI  370 (608)
Q Consensus       297 ~~L~l~~~~~l~~~~~~~~~~lp~~~~~~-----~~~~~~~~~~~~~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~l~l  370 (608)
                      +.|+++++...........+.++. +..+     .+............++++|++++|++++ +.+..|..+++|+.|++
T Consensus       402 ~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  480 (606)
T 3vq2_A          402 QHLDFQHSTLKRVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL  480 (606)
T ss_dssp             CEEECTTSEEESTTTTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CeeECCCCccCCccChhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence            888886543111110000011111 1000     0000000001122367999999999998 57888999999999999


Q ss_pred             ccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCC-CCCEEEccCCccc
Q psy3330         371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLE-RISFLDLSDNPLH  449 (608)
Q Consensus       371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~-~L~~L~L~~N~~~  449 (608)
                      +. +.++.+.+..|.++++|++|++++|+ +..+++..|.++++|+.|+|++|+|+.+|..+..++ +|++|++++|||.
T Consensus       481 s~-n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          481 SK-CQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             TT-SCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             CC-CcCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence            98 78999999999999999999999998 766755669999999999999999999999977776 6999999999999


Q ss_pred             cccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccC
Q psy3330         450 CDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVP  529 (608)
Q Consensus       450 CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~  529 (608)
                      |+|++.||..|++...                                      ....+..+..|.+|+.++|+++.+++
T Consensus       559 c~c~~~~~~~~l~~~~--------------------------------------~~~~~~~~~~C~~p~~~~~~~l~~~~  600 (606)
T 3vq2_A          559 CICEHQKFLQWVKEQK--------------------------------------QFLVNVEQMTCATPVEMNTSLVLDFN  600 (606)
T ss_dssp             CSSTTHHHHTTTTTSS--------------------------------------SSBSSGGGCCCC--------------
T ss_pred             cCCccHHHHHHHHcCc--------------------------------------ccccCCccceeCCChHhCCCEeeecc
Confidence            9999999999986321                                      11223467899999999999999887


Q ss_pred             CCc
Q psy3330         530 ENS  532 (608)
Q Consensus       530 ~~~  532 (608)
                      .+.
T Consensus       601 ~~~  603 (606)
T 3vq2_A          601 NST  603 (606)
T ss_dssp             ---
T ss_pred             ccc
Confidence            664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-50  Score=447.45  Aligned_cols=466  Identities=22%  Similarity=0.274  Sum_probs=311.4

Q ss_pred             CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330          20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      ..||..|.|......++|++.+++++|..+|+.+++|++++|.++.++ .+|.++++|++|++++|.++.+.+.+|++++
T Consensus         2 ~~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   81 (606)
T 3t6q_A            2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH   81 (606)
T ss_dssp             ----CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred             ccccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcc
Confidence            468999999877789999999999999999999999999999999985 5899999999999999999999999999999


Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL  178 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  178 (608)
                      +|++|+|++|+++.+.+.+|.++++|++|++++|.++.+.+..|.++++|++|++++|.+.++. ...+..+++|++|++
T Consensus        82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  160 (606)
T 3t6q_A           82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK-LPKGFPTEKLKVLDF  160 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC-CCTTCCCTTCCEEEC
T ss_pred             ccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC-cccccCCcccCEEEc
Confidence            9999999999999998889999999999999999999988888999999999999999998875 334555888888888


Q ss_pred             cCCCCCCCCcccccCCCCCCce--EEEccCCCCccccC------------------------------------------
Q psy3330         179 DNNQILDVPNNVLSNLPHQSLH--YLYLNENLIETVLD------------------------------------------  214 (608)
Q Consensus       179 ~~n~l~~~~~~~~~~l~~~~L~--~L~L~~n~l~~~~~------------------------------------------  214 (608)
                      ++|.++.+++..+..+  ++++  .|++++|.++++.+                                          
T Consensus       161 ~~n~l~~~~~~~~~~l--~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~  238 (606)
T 3t6q_A          161 QNNAIHYLSKEDMSSL--QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM  238 (606)
T ss_dssp             CSSCCCEECHHHHHTT--TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred             ccCcccccChhhhhhh--cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence            8888887766655555  3355  55555555555444                                          


Q ss_pred             ---------------------------------CCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCC
Q psy3330         215 ---------------------------------NSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI  261 (608)
Q Consensus       215 ---------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  261 (608)
                                                       ..|.. +++|+.|++++|.++.+ |..+.++++|++|++++|+++++
T Consensus       239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~  316 (606)
T 3t6q_A          239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENL  316 (606)
T ss_dssp             CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT-CTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBG
T ss_pred             cccccChhHhchhhcCceeEEEeecCccCccCHHHhcc-ccCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCcC
Confidence                                             33443 45555555555555543 23345555555555555555555


Q ss_pred             ChhhhhCCCCCCEEeccCCCCC-ccChhhhCCCCCCceeeccCCCCCC---------------CC---CcccccCCchhh
Q psy3330         262 PTKQLSKLSALVNLDLSGNNFS-NIDSVAFKSLFSLKLVKINLIPNLD---------------SI---DQPLSLSLPPLL  322 (608)
Q Consensus       262 ~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~f~~l~~L~~L~l~~~~~l~---------------~~---~~~~~~~lp~~~  322 (608)
                      ++..+..+++|+.|++++|.+. .+++..|..+++|+.|+++++....               .+   .+...+..|..+
T Consensus       317 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  396 (606)
T 3t6q_A          317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF  396 (606)
T ss_dssp             GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred             chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence            4445555555555555555554 2333345555555555554332100               00   011111111111


Q ss_pred             hccc------cc--cccccCC---C-CCceecEEecCCCCCCCcChhhhcccccccccccccC-----------------
Q psy3330         323 LSLS------IP--LAFSLTP---L-GTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLI-----------------  373 (608)
Q Consensus       323 ~~~~------~~--~~~~~~~---~-~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~-----------------  373 (608)
                      ..++      +.  ......+   + ...++++|++++|.+++.++..+..+++|+.|+++.+                 
T Consensus       397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~  476 (606)
T 3t6q_A          397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG  476 (606)
T ss_dssp             TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred             cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence            1000      00  0000000   0 1123455666666555555555555555555555431                 


Q ss_pred             ---------CCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEc
Q psy3330         374 ---------PNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDL  443 (608)
Q Consensus       374 ---------~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L  443 (608)
                               +.++.+.+..|.++++|++|++++|+ +..++...|.++++| .|+|++|+++.+++..+ .+++|+.+++
T Consensus       477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l  554 (606)
T 3t6q_A          477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL  554 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred             CccEEECCCCccCccChhhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence                     34455555556666666666666665 444444446666666 66666666666555443 4678999999


Q ss_pred             cCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCC
Q psy3330         444 SDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGL  523 (608)
Q Consensus       444 ~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~  523 (608)
                      ++|||.|||+..||..|++.+..                                      ........+|++|+.++|+
T Consensus       555 ~~N~~~c~c~~~~~~~w~~~~~~--------------------------------------~~~~~~~~~C~~p~~~~g~  596 (606)
T 3t6q_A          555 RQNPLDCTCSNIYFLEWYKENMQ--------------------------------------KLEDTEDTLCENPPLLRGV  596 (606)
T ss_dssp             TTCCEECSGGGHHHHHHHHHCGG--------------------------------------GEECGGGCBEEESGGGTTC
T ss_pred             CCCCccccCCcHHHHHHHHhCcc--------------------------------------cccCCCCCeeCCchHhCCC
Confidence            99999999999999999984311                                      1123457899999999999


Q ss_pred             cccccCC
Q psy3330         524 EVKAVPE  530 (608)
Q Consensus       524 ~~~~~~~  530 (608)
                      ++.+++.
T Consensus       597 ~l~~~~~  603 (606)
T 3t6q_A          597 RLSDVTL  603 (606)
T ss_dssp             BGGGCCC
T ss_pred             eeeeeec
Confidence            9998864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.8e-50  Score=448.59  Aligned_cols=470  Identities=27%  Similarity=0.378  Sum_probs=279.1

Q ss_pred             CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEE
Q psy3330          25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL  103 (608)
Q Consensus        25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L  103 (608)
                      +|.|..  ..++|++.+++++|..+|+++++|+|++|.++.+++ .+.++++|++|++++|.++.+++.+|+++++|++|
T Consensus         1 ~C~~~~--~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   78 (680)
T 1ziw_A            1 KCTVSH--EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL   78 (680)
T ss_dssp             ---CBS--SEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred             CceeEC--CeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence            367753  579999999999999999999999999999999876 68999999999999999999999999999999999


Q ss_pred             EccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330         104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI  183 (608)
Q Consensus       104 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  183 (608)
                      +|++|.++.+++.+|.++++|++|++++|+++++++..|.++++|++|++++|.+.+.. +..+.++++|++|++++|.+
T Consensus        79 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A           79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCC
T ss_pred             ECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcc
Confidence            99999999999888999999999999999999998888999999999999999988876 67778888888888888877


Q ss_pred             CCCCcccccCCCCCCceEEEccCCCCccccCC------------------------------------------------
Q psy3330         184 LDVPNNVLSNLPHQSLHYLYLNENLIETVLDN------------------------------------------------  215 (608)
Q Consensus       184 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~------------------------------------------------  215 (608)
                      +++++..+.....++|+.|++++|.++++.+.                                                
T Consensus       158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~  237 (680)
T 1ziw_A          158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT  237 (680)
T ss_dssp             CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred             cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence            76655433211112344444444444433322                                                


Q ss_pred             ---CccccCC--CccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChh--------------------------
Q psy3330         216 ---SFPFTLT--NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTK--------------------------  264 (608)
Q Consensus       216 ---~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--------------------------  264 (608)
                         .|.. ++  +|+.|++++|.++++.+..|..+++|++|++++|+++++++.                          
T Consensus       238 ~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~  316 (680)
T 1ziw_A          238 SNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS  316 (680)
T ss_dssp             CTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred             ChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence               2222 21  255555555555555555555555555555555554443322                          


Q ss_pred             -------hhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCC-----------------CCCC---CCcccc--
Q psy3330         265 -------QLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP-----------------NLDS---IDQPLS--  315 (608)
Q Consensus       265 -------~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~-----------------~l~~---~~~~~~--  315 (608)
                             .|..+++|+.|++++|.++++.+..|..+++|+.|+++++.                 .+..   ..+.+.  
T Consensus       317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~  396 (680)
T 1ziw_A          317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI  396 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred             ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence                   33445555566666666666666666666666666665431                 0000   001111  


Q ss_pred             ----------------------cCCchh-hhccc------c---------cccc-------------------ccCC---
Q psy3330         316 ----------------------LSLPPL-LLSLS------I---------PLAF-------------------SLTP---  335 (608)
Q Consensus       316 ----------------------~~lp~~-~~~~~------~---------~~~~-------------------~~~~---  335 (608)
                                            +.+|.. +..+.      +         +..+                   ...+   
T Consensus       397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~  476 (680)
T 1ziw_A          397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF  476 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred             ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence                                  111100 00000      0         0000                   0000   


Q ss_pred             CCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCc--------------------------------CChhh
Q psy3330         336 LGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS--------------------------------IDQRA  383 (608)
Q Consensus       336 ~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~--------------------------------~~~~~  383 (608)
                      ....++++|++++|+++++++..|.++++|+.|+++. +.++.                                ++...
T Consensus       477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~  555 (680)
T 1ziw_A          477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV  555 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence            0112467778888888777777777777777766665 44433                                33344


Q ss_pred             hcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC--CCCCCCEEEccCCccccccCC-hHHHHH
Q psy3330         384 FVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF--PLERISFLDLSDNPLHCDCNL-LWLWIL  460 (608)
Q Consensus       384 f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~--~l~~L~~L~L~~N~~~CdC~~-~~~~~~  460 (608)
                      |.++++|++|++++|+ ++.+|..+|.++++|+.|+|++|+|+.+++..+  .+++|+.+++++|||.|||++ .||..|
T Consensus       556 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          556 FKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW  634 (680)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred             cccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence            4444455555554444 444444444555555555555555554444333  357888999999999999996 898888


Q ss_pred             HHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCC
Q psy3330         461 VQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCES  537 (608)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~  537 (608)
                      ++...                                     .........++|++|+.++|+++.+++.....|..
T Consensus       635 ~~~~~-------------------------------------~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~  674 (680)
T 1ziw_A          635 INETH-------------------------------------TNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA  674 (680)
T ss_dssp             SSCC-------------------------------------------------------------------------
T ss_pred             HHhcC-------------------------------------cccccccCCcEECCchHHCCCcccccChhhcCCCc
Confidence            65210                                     00111124679999999999999999988865544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.7e-48  Score=413.28  Aligned_cols=379  Identities=28%  Similarity=0.445  Sum_probs=309.2

Q ss_pred             CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330          20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      ..||..|.|......|+|++.+++.+|..+|++++.|+|++|+++.++ ..|.++++|++|+|++|.++.+.+..|.+++
T Consensus         1 ~~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~   80 (477)
T 2id5_A            1 TGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF   80 (477)
T ss_dssp             CCCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CcccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence            369999999987789999999999999999999999999999999986 5899999999999999999999999999999


Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL  178 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  178 (608)
                      +|++|+|++|.++.+++..|.++++|++|+|++|++..+.+..|.++++|++|++++|.+..+. +..|.++++|++|++
T Consensus        81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTL  159 (477)
T ss_dssp             TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEE
T ss_pred             cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEEC
Confidence            9999999999999999888999999999999999999999999999999999999999999887 788999999999999


Q ss_pred             cCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcC
Q psy3330         179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL  258 (608)
Q Consensus       179 ~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  258 (608)
                      ++|+++.+++..+..+  ++|+.|++++|.+.++.+..|.. +++|+.|++++|...+..+.......+|++|++++|++
T Consensus       160 ~~n~l~~~~~~~l~~l--~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  236 (477)
T 2id5_A          160 EKCNLTSIPTEALSHL--HGLIVLRLRHLNINAIRDYSFKR-LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL  236 (477)
T ss_dssp             ESCCCSSCCHHHHTTC--TTCCEEEEESCCCCEECTTCSCS-CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred             CCCcCcccChhHhccc--CCCcEEeCCCCcCcEeChhhccc-CcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence            9999999888878777  55888888888888887777776 78888888887765433333333344777777777777


Q ss_pred             CCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCC
Q psy3330         259 SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGT  338 (608)
Q Consensus       259 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~  338 (608)
                      +++++..+..+++|+.|+|++|+++++.+..|..+                                             
T Consensus       237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---------------------------------------------  271 (477)
T 2id5_A          237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL---------------------------------------------  271 (477)
T ss_dssp             CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC---------------------------------------------
T ss_pred             cccCHHHhcCccccCeeECCCCcCCccChhhcccc---------------------------------------------
Confidence            77776667777777777777777666655444443                                             


Q ss_pred             ceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEE
Q psy3330         339 LKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSV  418 (608)
Q Consensus       339 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L  418 (608)
                                                                       ++|++|+|++|+ +..++...|.++++|+.|
T Consensus       272 -------------------------------------------------~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          272 -------------------------------------------------LRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             -------------------------------------------------TTCCEEECCSSC-CSEECTTTBTTCTTCCEE
T ss_pred             -------------------------------------------------ccCCEEECCCCc-cceECHHHhcCcccCCEE
Confidence                                                             445555555665 666655668888899999


Q ss_pred             EcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhh
Q psy3330         419 SLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDR  497 (608)
Q Consensus       419 ~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (608)
                      +|++|+|+.+++..+ .+++|+.|++++|||.|||++.|+..|...                                  
T Consensus       302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~----------------------------------  347 (477)
T 2id5_A          302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWR----------------------------------  347 (477)
T ss_dssp             ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTS----------------------------------
T ss_pred             ECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhc----------------------------------
Confidence            999999998887765 588999999999999999999988655320                                  


Q ss_pred             hhhcCCcceeeccccccCCCCcccCCcccccCCC----ccccCCc
Q psy3330         498 IIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPEN----SVHCESN  538 (608)
Q Consensus       498 ~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~----~~~C~~~  538 (608)
                             .........|.+|..++|+.+.+++..    .+.|..+
T Consensus       348 -------~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P  385 (477)
T 2id5_A          348 -------LNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRA  385 (477)
T ss_dssp             -------SCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEE
T ss_pred             -------cccCccCceeCCchHHcCCchhhCccccccceeEeccc
Confidence                   112234678999999999998877643    4667543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.9e-47  Score=405.48  Aligned_cols=394  Identities=25%  Similarity=0.333  Sum_probs=333.4

Q ss_pred             cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccc-ccccccCCCccEEEeeCCCCc-ccCcccccc
Q psy3330          19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV-HYTLSFYIELRSLDLSVNKIN-VLGSHNFEY   96 (608)
Q Consensus        19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l-~~~~~~~~~L~~L~Ls~n~l~-~i~~~~f~~   96 (608)
                      +.+||..|.|..  ..|+|++.+++.+|. +|+++++|+|++|.++.+ +..+.++++|++|++++|.+. .+++..|.+
T Consensus         1 a~p~~~~c~~~~--~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~   77 (455)
T 3v47_A            1 ADPGTSECSVIG--YNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG   77 (455)
T ss_dssp             ------CCEEET--TEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT
T ss_pred             CCCccceeEEEc--cccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccc
Confidence            367999999964  479999999999999 999999999999999987 568999999999999999987 788889999


Q ss_pred             cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChh--hhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330          97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT--AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR  174 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  174 (608)
                      +++|++|+|++|.++.+.+..|.++++|++|++++|++++..+.  .|.++++|++|++++|.+.+..+...|.++++|+
T Consensus        78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            99999999999999999888999999999999999999874443  4899999999999999999986234489999999


Q ss_pred             EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCcc--------ccCCCccEEEccCCCCCccCcccccC--
Q psy3330         175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP--------FTLTNLHTLALSSNIISFINESSFVT--  244 (608)
Q Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~--  244 (608)
                      +|++++|++.++.+..+..+....++.|++++|.+.+..+..+.        . +++|+.|++++|.+.+..+..+..  
T Consensus       158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK-NTSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT-TCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc-cceeeeEecCCCcccccchhhhhccc
Confidence            99999999999988877766446799999999999987765432        3 578999999999998766665543  


Q ss_pred             -CCccCEEeccCCcCCC----------CChhhhhC--CCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCC
Q psy3330         245 -LRTLHSLDLSNNNLSA----------IPTKQLSK--LSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID  311 (608)
Q Consensus       245 -l~~L~~L~Ls~n~l~~----------l~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~  311 (608)
                       .++|+.|++++|.+..          .....+.+  .++|+.|++++|.++++.+..|..+++|+.             
T Consensus       237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-------------  303 (455)
T 3v47_A          237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ-------------  303 (455)
T ss_dssp             TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCE-------------
T ss_pred             cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCE-------------
Confidence             3789999999885543          22222333  358999999999999888888877777654             


Q ss_pred             cccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccc
Q psy3330         312 QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLE  391 (608)
Q Consensus       312 ~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~  391 (608)
                                                      |++++|+++++++..|.++++|+.|+++. +.++.+.+..|.++++|+
T Consensus       304 --------------------------------L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          304 --------------------------------LTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             --------------------------------EECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGGTTCTTCC
T ss_pred             --------------------------------EECCCCcccccChhHhcCcccCCEEECCC-CccCCcChhHhcCcccCC
Confidence                                            55578888888888888999999999988 788888888999999999


Q ss_pred             eeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHh
Q psy3330         392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQL  463 (608)
Q Consensus       392 ~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~  463 (608)
                      +|++++|+ ++.+++..|.++++|++|+|++|+|+.+|+..+ .+++|++|++++|||.|+|+ ..|+..|++.
T Consensus       351 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~  423 (455)
T 3v47_A          351 VLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  423 (455)
T ss_dssp             EEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             EEECCCCc-ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHh
Confidence            99999998 777766679999999999999999999998775 68999999999999999998 7899999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.8e-46  Score=408.23  Aligned_cols=406  Identities=19%  Similarity=0.219  Sum_probs=305.6

Q ss_pred             CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330          20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      ..|+..|.|... ..++|++.+++.+|..+++++++|++++|.++.++ .++.++++|++|++++|+++++++.+|.+++
T Consensus        22 ~~~~~~~~~~~~-~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  100 (562)
T 3a79_B           22 VGSMTPFSNELE-SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ  100 (562)
T ss_dssp             -----------C-CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             hccccccccCCC-cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence            445555677654 79999999999999999999999999999999987 4899999999999999999999999999999


Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCc--cE
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL--RI  175 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~  175 (608)
                      +|++|+|++|+++.++..   .+++|++|++++|+++.++ +..|+++++|++|++++|.+....    +..+++|  ++
T Consensus       101 ~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~  173 (562)
T 3a79_B          101 DLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSC  173 (562)
T ss_dssp             TCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEE
T ss_pred             CCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeE
Confidence            999999999999999865   7999999999999999876 478999999999999999998743    4455555  99


Q ss_pred             EEccCCCC--CCCCcccccCCC------------------------CCCceEEEccCCCC--------------------
Q psy3330         176 LKLDNNQI--LDVPNNVLSNLP------------------------HQSLHYLYLNENLI--------------------  209 (608)
Q Consensus       176 L~L~~n~l--~~~~~~~~~~l~------------------------~~~L~~L~L~~n~l--------------------  209 (608)
                      |++++|.+  ....+..+..+.                        .++|+.+++++|..                    
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~  253 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN  253 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred             EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence            99999988  655555444432                        02244444444320                    


Q ss_pred             --------c-----cccCCCccccCCCccEEEccCCCCCccCcccc-----cCC--------------------------
Q psy3330         210 --------E-----TVLDNSFPFTLTNLHTLALSSNIISFINESSF-----VTL--------------------------  245 (608)
Q Consensus       210 --------~-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l--------------------------  245 (608)
                              .     +..+ .+ . .++|++|++++|.+++..|..+     ..+                          
T Consensus       254 L~L~~~~l~~~~~~~~~~-~~-~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~  330 (562)
T 3a79_B          254 VTLQHIETTWKCSVKLFQ-FF-W-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE  330 (562)
T ss_dssp             EEEEEEEECHHHHHHHHH-HH-T-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred             EEecCCcCcHHHHHHHHH-hh-h-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence                    0     0000 00 0 1256666666666553333322     222                          


Q ss_pred             CccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcc
Q psy3330         246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSL  325 (608)
Q Consensus       246 ~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~  325 (608)
                      .+|++|++++|.+..++  ....+++|+.|++++|.+++..+..|..+++|+.|+++++. +....     .+|..+.  
T Consensus       331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~~--  400 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFF-----KVALMTK--  400 (562)
T ss_dssp             CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTT-----HHHHTTT--
T ss_pred             CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcc-----cchhhhc--
Confidence            34677777777766554  12678899999999999999888889999999999996432 11110     1111111  


Q ss_pred             ccccccccCCCCCceecEEecCCCCCCC-cChhhhcccccccccccccCCCCCcCChhhhcCC-cccceeecccCccccc
Q psy3330         326 SIPLAFSLTPLGTLKCDRLDLSGNNFSN-IDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN-IQLETVIINENMNLKQ  403 (608)
Q Consensus       326 ~~~~~~~~~~~~~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l-~~L~~L~Ls~N~~l~~  403 (608)
                                 ...++++|++++|++++ ++...+..+++|+.|+++. +.++...   +..+ ++|++|++++|+ ++.
T Consensus       401 -----------~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~~L~~L~L~~N~-l~~  464 (562)
T 3a79_B          401 -----------NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS-NMLTGSV---FRCLPPKVKVLDLHNNR-IMS  464 (562)
T ss_dssp             -----------TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS-SCCCGGG---GSSCCTTCSEEECCSSC-CCC
T ss_pred             -----------CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC-CCCCcch---hhhhcCcCCEEECCCCc-Ccc
Confidence                       12256899999999999 8888899999999999998 6665433   3334 699999999997 889


Q ss_pred             cCcccCCCCCCCCEEEcCCCcccccCCC-CCCCCCCCEEEccCCccccccCChHHHH-HHHh
Q psy3330         404 LPSKLFQGNTNLKSVSLKGNSLSHLEAS-HFPLERISFLDLSDNPLHCDCNLLWLWI-LVQL  463 (608)
Q Consensus       404 lp~~~f~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~L~~N~~~CdC~~~~~~~-~~~~  463 (608)
                      +|..++ ++++|+.|+|++|+|+++|+. +..+++|+.|++++|||.|||++.|+.. |.+.
T Consensus       465 ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~  525 (562)
T 3a79_B          465 IPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK  525 (562)
T ss_dssp             CCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHH
T ss_pred             cChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHh
Confidence            999866 899999999999999999998 5579999999999999999999999965 8763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-46  Score=411.27  Aligned_cols=429  Identities=22%  Similarity=0.266  Sum_probs=335.5

Q ss_pred             CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEE
Q psy3330          25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL  103 (608)
Q Consensus        25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L  103 (608)
                      .|.|......++|++.+++++|..+|+++++|++++|.++.++. +|.++++|++|++++|+++.+++.+|+++++|++|
T Consensus         2 ~c~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L   81 (570)
T 2z63_A            2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (570)
T ss_dssp             CSEEEETTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CccccCCCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence            58888777899999999999999999999999999999999875 89999999999999999999999999999999999


Q ss_pred             EccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330         104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI  183 (608)
Q Consensus       104 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  183 (608)
                      +|++|.++.+++.+|.++++|++|++++|+++.+++..|+++++|++|++++|.+..+..|..|+++++|++|++++|++
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             eCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence            99999999999999999999999999999999998878999999999999999999854478899999999999999999


Q ss_pred             CCCCcccccCCCCCCc----eEEEccCCCCccccCCCc------------------------------------------
Q psy3330         184 LDVPNNVLSNLPHQSL----HYLYLNENLIETVLDNSF------------------------------------------  217 (608)
Q Consensus       184 ~~~~~~~~~~l~~~~L----~~L~L~~n~l~~~~~~~~------------------------------------------  217 (608)
                      +.+++..+..+  .++    +.+++++|.++++.+..|                                          
T Consensus       162 ~~~~~~~~~~l--~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          162 QSIYCTDLRVL--HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             CEECGGGGHHH--HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             ceecHHHccch--hccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence            98877666554  234    567777766655544333                                          


Q ss_pred             ---------------------------------------cccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcC
Q psy3330         218 ---------------------------------------PFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL  258 (608)
Q Consensus       218 ---------------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  258 (608)
                                                             .. +++|+.|++++|.+.++ +..+..+ +|++|++++|.+
T Consensus       240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~l-~~~~~~~-~L~~L~l~~n~~  316 (570)
T 2z63_A          240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIERV-KDFSYNF-GWQHLELVNCKF  316 (570)
T ss_dssp             CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEECSC-CBCCSCC-CCSEEEEESCBC
T ss_pred             chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccchhh-hhhhccC-CccEEeeccCcc
Confidence                                                   32 56677777777766654 3344444 666666666666


Q ss_pred             CCCChhhh-------------------hCCCCCCEEeccCCCCCccC--hhhhCCCCCCceeeccCCCCCCCCCcccccC
Q psy3330         259 SAIPTKQL-------------------SKLSALVNLDLSGNNFSNID--SVAFKSLFSLKLVKINLIPNLDSIDQPLSLS  317 (608)
Q Consensus       259 ~~l~~~~~-------------------~~l~~L~~L~Ls~N~l~~~~--~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~  317 (608)
                      +.+|...+                   ..+++|+.|++++|.+++..  +..+..+++|+.|+++++.... .... .+.
T Consensus       317 ~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~  394 (570)
T 2z63_A          317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN-FLG  394 (570)
T ss_dssp             SSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE-EET
T ss_pred             cccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc-ccc
Confidence            65553222                   45677888888888887765  5567788888888886543110 0000 001


Q ss_pred             Cchhhhccccc-----cccc-cCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCC-cCChhhhcCCccc
Q psy3330         318 LPPLLLSLSIP-----LAFS-LTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLD-SIDQRAFVDNIQL  390 (608)
Q Consensus       318 lp~~~~~~~~~-----~~~~-~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~-~~~~~~f~~l~~L  390 (608)
                      ++. +..+.+.     .... .......++++|++++|.+.+..+..|.++++|+.|+++. +.+. ...+..|.++++|
T Consensus       395 l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          395 LEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELRNL  472 (570)
T ss_dssp             CTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTC
T ss_pred             cCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcC-CcCccccchhhhhcccCC
Confidence            110 0000000     0000 0011223679999999999999999999999999999998 5554 3455788999999


Q ss_pred             ceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHH-HHHHh
Q psy3330         391 ETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLW-ILVQL  463 (608)
Q Consensus       391 ~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~-~~~~~  463 (608)
                      ++|++++|+ +..+++..|..+++|+.|+|++|+++.+++..+ .+++|+.|++++|||.|+|+..|+. .|++.
T Consensus       473 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~  546 (570)
T 2z63_A          473 TFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  546 (570)
T ss_dssp             CEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             CEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHh
Confidence            999999998 777766669999999999999999999987755 7899999999999999999998887 99884

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-45  Score=402.50  Aligned_cols=422  Identities=21%  Similarity=0.261  Sum_probs=296.0

Q ss_pred             CCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330          21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNK   99 (608)
Q Consensus        21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~   99 (608)
                      .||+.|.|       +|++.+++++|..+++++++|++++|.++.++ ..+.++++|++|++++|+++.+++.+|.++++
T Consensus         3 ~C~~~~~c-------~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   75 (549)
T 2z81_A            3 SCDASGVC-------DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS   75 (549)
T ss_dssp             EECTTSEE-------ECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCceE-------ECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence            58888876       67889999999999999999999999999875 58999999999999999999999999999999


Q ss_pred             ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC-hhhhCCCCCCcEEEccCCC-CCccCchhhhcCCCCccEEE
Q psy3330         100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN-KTAFRDTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILK  177 (608)
Q Consensus       100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~  177 (608)
                      |++|++++|.++++++..|.++++|++|++++|.++.+. +..|.++++|++|++++|. +..++ +..|.++++|++|+
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~  154 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELE  154 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEE
T ss_pred             CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeee
Confidence            999999999999999999999999999999999998753 4678999999999999998 55554 67899999999999


Q ss_pred             ccCCCCCCCCcccccCCCC----------------------CCceEEEccCCCCcccc--CCCccccCCCccEEEccCCC
Q psy3330         178 LDNNQILDVPNNVLSNLPH----------------------QSLHYLYLNENLIETVL--DNSFPFTLTNLHTLALSSNI  233 (608)
Q Consensus       178 L~~n~l~~~~~~~~~~l~~----------------------~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~  233 (608)
                      +++|++.+..+..+..++.                      ++|+.|++++|.+++..  +..+...+++|+.|++++|.
T Consensus       155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             ccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence            9999998766665555421                      34555555555555431  00110012222222222221


Q ss_pred             C----------------------------CccCc---------c--------------------------cccCCCccCE
Q psy3330         234 I----------------------------SFINE---------S--------------------------SFVTLRTLHS  250 (608)
Q Consensus       234 l----------------------------~~~~~---------~--------------------------~~~~l~~L~~  250 (608)
                      +                            .++..         .                          .+....+|+.
T Consensus       235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~  314 (549)
T 2z81_A          235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR  314 (549)
T ss_dssp             EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred             cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence            1                            11000         0                          0011235667


Q ss_pred             EeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccCh---hhhCCCCCCceeeccCCCCCCCCCc--ccccCCchh----
Q psy3330         251 LDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS---VAFKSLFSLKLVKINLIPNLDSIDQ--PLSLSLPPL----  321 (608)
Q Consensus       251 L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~f~~l~~L~~L~l~~~~~l~~~~~--~~~~~lp~~----  321 (608)
                      |++++|+++.+|...+..+++|+.|++++|++++..+   ..+..+++|+.|+++++.- .....  ...+.++..    
T Consensus       315 L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~  393 (549)
T 2z81_A          315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLD  393 (549)
T ss_dssp             EEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEE
T ss_pred             EEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCCCCEEE
Confidence            7777777777776555677788888888887776543   2356677777777764321 11000  000001000    


Q ss_pred             hhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccc
Q psy3330         322 LLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL  401 (608)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l  401 (608)
                      +....+..... ......++++|++++|++++++....   ++|+.|+++. ++++.+.    .++++|++|++++|+ +
T Consensus       394 Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~~---~~L~~L~Ls~-N~l~~~~----~~l~~L~~L~Ls~N~-l  463 (549)
T 2z81_A          394 ISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSN-NNLDSFS----LFLPRLQELYISRNK-L  463 (549)
T ss_dssp             CTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTSC---TTCSEEECCS-SCCSCCC----CCCTTCCEEECCSSC-C
T ss_pred             CCCCCCccCCh-hhcccccccEEECCCCCcccccchhc---CCceEEECCC-CChhhhc----ccCChhcEEECCCCc-c
Confidence            00000000000 00011245677777777766554332   4667777766 5565542    478999999999997 8


Q ss_pred             cccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHh
Q psy3330         402 KQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQL  463 (608)
Q Consensus       402 ~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~  463 (608)
                      +.+|..  ..+++|+.|+|++|+++.+++..+ .+++|+.|++++|||.|+|+ ..|+..|++.
T Consensus       464 ~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~  525 (549)
T 2z81_A          464 KTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  525 (549)
T ss_dssp             SSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             CcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHh
Confidence            899974  568999999999999999888754 78999999999999999998 5788889874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.6e-45  Score=393.05  Aligned_cols=396  Identities=19%  Similarity=0.215  Sum_probs=300.9

Q ss_pred             ceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCC
Q psy3330          32 KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI  110 (608)
Q Consensus        32 ~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i  110 (608)
                      .+.++|++.+++.+|..+++++++|++++|.++.++ ..+.++++|++|++++|+++++++..|+++++|++|+|++|++
T Consensus         2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred             cceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence            367999999999999999999999999999999987 4899999999999999999999999999999999999999999


Q ss_pred             CCCChhhhcCCCcCcEeeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCc--cEEEccCCCC--CC
Q psy3330         111 SALSKDTFKGLKELKTLDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL--RILKLDNNQI--LD  185 (608)
Q Consensus       111 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~  185 (608)
                      +.++..   .+++|++|++++|.++++. |..|+++++|++|++++|.+...    .+..+++|  ++|++++|.+  ..
T Consensus        82 ~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           82 VKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             CEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred             eecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccccccc
Confidence            988764   8999999999999999863 68899999999999999998763    36777777  9999999988  44


Q ss_pred             CCcccccCCC------------------------CCCceEEEccCCC-------CccccCCCccc---------------
Q psy3330         186 VPNNVLSNLP------------------------HQSLHYLYLNENL-------IETVLDNSFPF---------------  219 (608)
Q Consensus       186 ~~~~~~~~l~------------------------~~~L~~L~L~~n~-------l~~~~~~~~~~---------------  219 (608)
                      ..+..+..+.                        .++|+.+++++|.       +.+..+ .+..               
T Consensus       155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~  233 (520)
T 2z7x_B          155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT  233 (520)
T ss_dssp             CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred             cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence            4443333321                        0223333333332       110000 0000               


Q ss_pred             -----------cCCCccEEEccCCCCCccCcccc-----cCCCc--------------------------cCEEeccCCc
Q psy3330         220 -----------TLTNLHTLALSSNIISFINESSF-----VTLRT--------------------------LHSLDLSNNN  257 (608)
Q Consensus       220 -----------~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~--------------------------L~~L~Ls~n~  257 (608)
                                 ..++|+.|++++|.+++..|..+     ..+++                          |+.|++++|.
T Consensus       234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~  313 (520)
T 2z7x_B          234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR  313 (520)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence                       01244444444444443333333     34444                          5555555555


Q ss_pred             CCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCccccc--CCchhhhccccccccccCC
Q psy3330         258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSL--SLPPLLLSLSIPLAFSLTP  335 (608)
Q Consensus       258 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~--~lp~~~~~~~~~~~~~~~~  335 (608)
                      +..++  .+..+++|++|++++|++++..+..+..+++|+.|+++++.        +.+  .+|..+..           
T Consensus       314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--------l~~l~~~~~~~~~-----------  372 (520)
T 2z7x_B          314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ--------LKELSKIAEMTTQ-----------  372 (520)
T ss_dssp             CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC--------CCBHHHHHHHHTT-----------
T ss_pred             ccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc--------cCccccchHHHhh-----------
Confidence            54443  12678899999999999998777888899999999996432        221  22222211           


Q ss_pred             CCCceecEEecCCCCCCC-cChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCC
Q psy3330         336 LGTLKCDRLDLSGNNFSN-IDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTN  414 (608)
Q Consensus       336 ~~~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~  414 (608)
                        ..++++|++++|++++ ++...+..+++|+.|+++. +.++...+..+.  ++|++|++++|+ ++.+|...+ .+++
T Consensus       373 --l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~-~l~~  445 (520)
T 2z7x_B          373 --MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS-NILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVV-KLEA  445 (520)
T ss_dssp             --CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS-SCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGG-GCTT
T ss_pred             --CCCCCEEECCCCcCCcccccchhccCccCCEEECcC-CCCCcchhhhhc--ccCCEEECCCCc-ccccchhhh-cCCC
Confidence              1256899999999999 7777799999999999998 666654444443  799999999997 889999855 8999


Q ss_pred             CCEEEcCCCcccccCCC-CCCCCCCCEEEccCCccccccCChHH-HHHHHh
Q psy3330         415 LKSVSLKGNSLSHLEAS-HFPLERISFLDLSDNPLHCDCNLLWL-WILVQL  463 (608)
Q Consensus       415 L~~L~L~~N~l~~l~~~-~~~l~~L~~L~L~~N~~~CdC~~~~~-~~~~~~  463 (608)
                      |+.|+|++|+|+.+|.. +..+++|++|++++|||.|+|++.|+ ..|.+.
T Consensus       446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~  496 (520)
T 2z7x_B          446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  496 (520)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHh
Confidence            99999999999999998 44789999999999999999999999 899874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4e-42  Score=388.31  Aligned_cols=292  Identities=21%  Similarity=0.205  Sum_probs=143.2

Q ss_pred             CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEE
Q psy3330         148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL  227 (608)
Q Consensus       148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  227 (608)
                      |++|++++|.+.+.. +..+.++++|++|++++|.+++..+..+..+  ++|+.|++++|.+++..+..+.. +++|+.|
T Consensus       396 L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L  471 (768)
T 3rgz_A          396 LQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMY-VKTLETL  471 (768)
T ss_dssp             CCEEECCSSEEEEEC-CGGGGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGG-CTTCCEE
T ss_pred             ccEEECCCCcccccc-CHHHhcCCCCCEEECcCCcccCcccHHHhcC--CCCCEEECCCCcccCcCCHHHcC-CCCceEE
Confidence            333333333333332 3344444444444444444444433344444  23444444444444444444443 4444444


Q ss_pred             EccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCC
Q psy3330         228 ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL  307 (608)
Q Consensus       228 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l  307 (608)
                      ++++|.+++..|..+.++++|++|++++|++++..|.++..+++|+.|++++|++++..|..+..+++|+.|+++     
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls-----  546 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN-----  546 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC-----
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC-----
Confidence            444444444444444444444445554444443333444444445555555554444444444444444444442     


Q ss_pred             CCCCcccccCCchhhhcccccccccc---------------------------CCC------CCceecEEecCCCCCCCc
Q psy3330         308 DSIDQPLSLSLPPLLLSLSIPLAFSL---------------------------TPL------GTLKCDRLDLSGNNFSNI  354 (608)
Q Consensus       308 ~~~~~~~~~~lp~~~~~~~~~~~~~~---------------------------~~~------~~~~l~~L~ls~n~l~~~  354 (608)
                         .+.+.|.+|..+...........                           ...      .......++++.|.++|.
T Consensus       547 ---~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~  623 (768)
T 3rgz_A          547 ---TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH  623 (768)
T ss_dssp             ---SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred             ---CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence               33444455544332110000000                           000      000112234444555555


Q ss_pred             ChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCccc-ccCCCCC
Q psy3330         355 DSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLS-HLEASHF  433 (608)
Q Consensus       355 ~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~-~l~~~~~  433 (608)
                      .+..+..+++|+.++++. +++++..+..|+++++|+.|+|++|++.+.+|.. |+++++|+.|||++|+++ .+|..+.
T Consensus       624 ~~~~~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          624 TSPTFDNNGSMMFLDMSY-NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             CCCSCSSSBCCCEEECCS-SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             CchhhhccccccEEECcC-CcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcCChHHh
Confidence            555556666666666666 5666666666666666666666666644566655 666666666666666666 5555555


Q ss_pred             CCCCCCEEEccCCccccccC
Q psy3330         434 PLERISFLDLSDNPLHCDCN  453 (608)
Q Consensus       434 ~l~~L~~L~L~~N~~~CdC~  453 (608)
                      .+++|++|++++|++.+..|
T Consensus       702 ~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             GCCCCSEEECCSSEEEEECC
T ss_pred             CCCCCCEEECcCCcccccCC
Confidence            66666666666666666443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.3e-41  Score=382.13  Aligned_cols=415  Identities=22%  Similarity=0.139  Sum_probs=315.6

Q ss_pred             eEEEecCCCCc-cccCccC---ccccEEEeccCCCcc-cccccccCCCccEEEeeCCCCc-ccCcccccccccccEEEcc
Q psy3330          33 LEASCTDAGLE-VVPIQLN---PEVQTIILRENRISN-VHYTLSFYIELRSLDLSVNKIN-VLGSHNFEYQNKLLNLNIS  106 (608)
Q Consensus        33 ~~v~C~~~~l~-~ip~~~~---~~l~~L~L~~n~i~~-l~~~~~~~~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls  106 (608)
                      ..++.++..++ .+|..+.   +++++|++++|.+++ +|..++++++|++|++++|.++ .++...|.++++|++|+++
T Consensus       272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence            34555555554 5555442   677888888887773 5567777788888888888776 5665557777777777777


Q ss_pred             CCCCCCCChhhhcC---------------------------CCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCC
Q psy3330         107 YNEISALSKDTFKG---------------------------LKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT  159 (608)
Q Consensus       107 ~n~i~~~~~~~~~~---------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  159 (608)
                      +|.+++..+..+.+                           +++|++|++++|++++..+..|.++++|++|++++|.++
T Consensus       352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  431 (768)
T 3rgz_A          352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS  431 (768)
T ss_dssp             SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence            77665332233322                           456777777777777677888999999999999999999


Q ss_pred             ccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCc
Q psy3330         160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE  239 (608)
Q Consensus       160 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  239 (608)
                      +.. |..|..+++|+.|++++|.+.+..+..+..+  ++|+.|++++|.+++..+..+.. +++|+.|++++|++++..|
T Consensus       432 ~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p  507 (768)
T 3rgz_A          432 GTI-PSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIP  507 (768)
T ss_dssp             SCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCC
T ss_pred             Ccc-cHHHhcCCCCCEEECCCCcccCcCCHHHcCC--CCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCC
Confidence            877 7889999999999999999998777778888  66999999999999998888987 9999999999999998889


Q ss_pred             ccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCc-------
Q psy3330         240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQ-------  312 (608)
Q Consensus       240 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~-------  312 (608)
                      ..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.....+..+.+.....+....+       
T Consensus       508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (768)
T 3rgz_A          508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC  587 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred             hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence            9999999999999999999976667899999999999999999987777776665555444322110000000       


Q ss_pred             -------ccccCCchhhhcccccccc-----------ccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCC
Q psy3330         313 -------PLSLSLPPLLLSLSIPLAF-----------SLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP  374 (608)
Q Consensus       313 -------~~~~~lp~~~~~~~~~~~~-----------~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~  374 (608)
                             .+.+..+..+.........           ........++++||+++|+++|..|..++++++|+.|+++. |
T Consensus       588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~-N  666 (768)
T 3rgz_A          588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH-N  666 (768)
T ss_dssp             CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS-S
T ss_pred             cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC-C
Confidence                   0111112111111100000           00001123578999999999999999999999999999999 8


Q ss_pred             CCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccC
Q psy3330         375 NLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCN  453 (608)
Q Consensus       375 ~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~  453 (608)
                      .+++..+..|+++++|++|+|++|++.+.+|.. |+.+++|++|||++|+++...+....+.++....+.+||.-|.-+
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~  744 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP  744 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence            999999999999999999999999977788886 899999999999999999443344455667777889999988643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=3.5e-40  Score=348.76  Aligned_cols=310  Identities=28%  Similarity=0.471  Sum_probs=194.7

Q ss_pred             ccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccc
Q psy3330          18 NKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEY   96 (608)
Q Consensus        18 ~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~   96 (608)
                      .+..||..|.|......|+|++.+++.+|..++++++.|+|++|.++.++ ..|.++++|++|+|++|.++.+++..|.+
T Consensus        31 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~  110 (440)
T 3zyj_A           31 SAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG  110 (440)
T ss_dssp             --CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred             ccccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence            45789999999877789999999999999998888877777777776655 35555555555555555555555555555


Q ss_pred             cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330          97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL  176 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  176 (608)
                      +++|++|+|++|+++.+++..|.+                        +++|++|++++|.+..++ +..|.++++|++|
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~------------------------l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L  165 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVY------------------------LSKLKELWLRNNPIESIP-SYAFNRIPSLRRL  165 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCS------------------------CSSCCEEECCSCCCCEEC-TTTTTTCTTCCEE
T ss_pred             CccCCEEECCCCcCCeeCHhHhhc------------------------cccCceeeCCCCcccccC-HHHhhhCcccCEe
Confidence            555555555555555554444444                        444445555444444443 3344444444444


Q ss_pred             EccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCC
Q psy3330         177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN  256 (608)
Q Consensus       177 ~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  256 (608)
                      ++++|+.                                                  +..+.+..|.++++|++|++++|
T Consensus       166 ~l~~~~~--------------------------------------------------l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          166 DLGELKR--------------------------------------------------LSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             ECCCCTT--------------------------------------------------CCEECTTTTTTCSSCCEEECTTS
T ss_pred             CCCCCCC--------------------------------------------------cceeCcchhhcccccCeecCCCC
Confidence            4443210                                                  01111122333444444555555


Q ss_pred             cCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCC
Q psy3330         257 NLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPL  336 (608)
Q Consensus       257 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~  336 (608)
                      +++.+|  .+..+++|+.|+|++|+++++.+..|..+++|                                        
T Consensus       196 ~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------------------------  233 (440)
T 3zyj_A          196 NLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL----------------------------------------  233 (440)
T ss_dssp             CCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------
T ss_pred             cCcccc--ccCCCcccCEEECCCCccCccChhhhccCccC----------------------------------------
Confidence            554444  24555666666666666666555544444333                                        


Q ss_pred             CCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCC
Q psy3330         337 GTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLK  416 (608)
Q Consensus       337 ~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~  416 (608)
                                                                            ++|++++|+ +..++..+|.++++|+
T Consensus       234 ------------------------------------------------------~~L~L~~n~-l~~~~~~~~~~l~~L~  258 (440)
T 3zyj_A          234 ------------------------------------------------------QKLWMIQSQ-IQVIERNAFDNLQSLV  258 (440)
T ss_dssp             ------------------------------------------------------CEEECTTCC-CCEECTTSSTTCTTCC
T ss_pred             ------------------------------------------------------CEEECCCCc-eeEEChhhhcCCCCCC
Confidence                                                                  334444454 5555556677788888


Q ss_pred             EEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhh
Q psy3330         417 SVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRV  495 (608)
Q Consensus       417 ~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (608)
                      .|+|++|+|+.++...+ .+++|+.|+|++|||.|||.+.||..|++.....                            
T Consensus       259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~----------------------------  310 (440)
T 3zyj_A          259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPS----------------------------  310 (440)
T ss_dssp             EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCS----------------------------
T ss_pred             EEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhcccc----------------------------
Confidence            88888888888887766 5889999999999999999999999999832100                            


Q ss_pred             hhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330         496 DRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN  538 (608)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~  538 (608)
                                 .......|.+|+.++|+.+.+++...+.|..+
T Consensus       311 -----------~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P  342 (440)
T 3zyj_A          311 -----------NTACCARCNTPPNLKGRYIGELDQNYFTCYAP  342 (440)
T ss_dssp             -----------SCSCCCBEEESTTTTTCBCC----CCSCCCCC
T ss_pred             -----------CCccccCCCChhHhcCccHhHhhhhhccCCCC
Confidence                       01135689999999999999999988899754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=2.7e-39  Score=343.22  Aligned_cols=309  Identities=28%  Similarity=0.448  Sum_probs=196.2

Q ss_pred             ccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccc
Q psy3330          18 NKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEY   96 (608)
Q Consensus        18 ~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~   96 (608)
                      ....||..|.|......|+|++.+++.+|..+|+++++|+|++|.++.++ ..|.++++|++|+|++|.++.+++..|.+
T Consensus        42 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  121 (452)
T 3zyi_A           42 GPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG  121 (452)
T ss_dssp             --CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CcCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence            35689999999877789999999999999999888888887777777664 35666666666666666666666556666


Q ss_pred             cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330          97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL  176 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  176 (608)
                      +++|++|+|++|+++.+++..|.++++|++|+|++|+++.+++.                         .|.++++|+.|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------~~~~l~~L~~L  176 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY-------------------------AFNRVPSLMRL  176 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT-------------------------TTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHh-------------------------HHhcCCcccEE
Confidence            66666666666666555555555555555555555555544444                         44555555555


Q ss_pred             EccCC-CCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccC
Q psy3330         177 KLDNN-QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN  255 (608)
Q Consensus       177 ~L~~n-~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  255 (608)
                      ++++| .+..++.                                                   ..|.++++|++|++++
T Consensus       177 ~l~~~~~l~~i~~---------------------------------------------------~~~~~l~~L~~L~L~~  205 (452)
T 3zyi_A          177 DLGELKKLEYISE---------------------------------------------------GAFEGLFNLKYLNLGM  205 (452)
T ss_dssp             ECCCCTTCCEECT---------------------------------------------------TTTTTCTTCCEEECTT
T ss_pred             eCCCCCCccccCh---------------------------------------------------hhccCCCCCCEEECCC
Confidence            55442 1111111                                                   1122233333333333


Q ss_pred             CcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCC
Q psy3330         256 NNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTP  335 (608)
Q Consensus       256 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~  335 (608)
                      |+++++|  .+..+++|+.|+|++|.++++.+..|..+++|+                                      
T Consensus       206 n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~--------------------------------------  245 (452)
T 3zyi_A          206 CNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK--------------------------------------  245 (452)
T ss_dssp             SCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCC--------------------------------------
T ss_pred             Ccccccc--cccccccccEEECcCCcCcccCcccccCccCCC--------------------------------------
Confidence            4343333  134445555566666655555554444443333                                      


Q ss_pred             CCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCC
Q psy3330         336 LGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNL  415 (608)
Q Consensus       336 ~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L  415 (608)
                                                                              +|++++|+ +..++...|.++++|
T Consensus       246 --------------------------------------------------------~L~L~~n~-l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          246 --------------------------------------------------------KLWVMNSQ-VSLIERNAFDGLASL  268 (452)
T ss_dssp             --------------------------------------------------------EEECTTSC-CCEECTTTTTTCTTC
T ss_pred             --------------------------------------------------------EEEeCCCc-CceECHHHhcCCCCC
Confidence                                                                    33333443 444444456677778


Q ss_pred             CEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhh
Q psy3330         416 KSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQR  494 (608)
Q Consensus       416 ~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (608)
                      +.|+|++|+|+.+|+..+ .+++|+.|+|++|||.|||++.|+..|.+.....                           
T Consensus       269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~---------------------------  321 (452)
T 3zyi_A          269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPT---------------------------  321 (452)
T ss_dssp             CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC-----------------------------
T ss_pred             CEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCcc---------------------------
Confidence            888888888887777665 5889999999999999999999999999843110                           


Q ss_pred             hhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330         495 VDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN  538 (608)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~  538 (608)
                                  .......|.+|+.++|+.+.+++...+.|..+
T Consensus       322 ------------~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P  353 (452)
T 3zyi_A          322 ------------NSTCCGRCHAPMHMRGRYLVEVDQASFQCSAP  353 (452)
T ss_dssp             -------------CCSSCBEEESTTTTTCBTTSCCGGGCCCCCC
T ss_pred             ------------CCccCcEeCCchHhccchhhccchhhhcccCc
Confidence                        01124679999999999998888888888654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=364.84  Aligned_cols=388  Identities=25%  Similarity=0.329  Sum_probs=253.1

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCC-CCCCCChhhhcCCCcCcEeeccCC
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYN-EISALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      +..+.++++++.+|.   ..++|++|+|++|.++.+.+..|.++++|++|+|++| .+..+++.+|.++++|++|+|++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            467889999999997   4689999999999999999999999999999999999 456777889999999999999999


Q ss_pred             cCCccChhhhCCCCCCcEEEccCCCCCccC-chhhhcCCCCccEEEccCCCCCCCCc-ccccCCCCCCceEEEccCCCCc
Q psy3330         133 KISVINKTAFRDTLHLELLILSFNNITYFE-DSEIFSSLKSLRILKLDNNQILDVPN-NVLSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L~L~~n~l~  210 (608)
                      .++.+.+..|.++++|++|+|++|.+.+.. ....|.++++|++|++++|.+.++++ ..+..+  ++|++|++++|.++
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L--~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSNQIF  161 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC--SSCCEEEEESSCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC--CCCCEEECCCCcCC
Confidence            999999999999999999999999998743 13459999999999999999998765 467888  56999999999886


Q ss_pred             cccCCCccc-------------------------c---------------------------------------------
Q psy3330         211 TVLDNSFPF-------------------------T---------------------------------------------  220 (608)
Q Consensus       211 ~~~~~~~~~-------------------------~---------------------------------------------  220 (608)
                      +..+..+..                         .                                             
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            543322211                         0                                             


Q ss_pred             -----------------------CCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEec
Q psy3330         221 -----------------------LTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL  277 (608)
Q Consensus       221 -----------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~L  277 (608)
                                             .++|+.|++++|.+.++.+..|..+++|+.|+|++|+++++++..|.++++|+.|++
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence                                   023445555555555555555666666777777777776666666677777777777


Q ss_pred             cCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchh----hhccccccc---------------cccCCCCC
Q psy3330         278 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPL----LLSLSIPLA---------------FSLTPLGT  338 (608)
Q Consensus       278 s~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~----~~~~~~~~~---------------~~~~~~~~  338 (608)
                      ++|.++++.+..|..+++|+.|+++++. +..........++..    +....+...               ..-.+...
T Consensus       322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~  400 (844)
T 3j0a_A          322 SYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN  400 (844)
T ss_dssp             ESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCC
T ss_pred             CCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccc
Confidence            7777776666667777777777775442 111111111111110    000000000               00000111


Q ss_pred             ceecEEecCCCCCCCcChh-hhcccccccccccccCCCCCcC------------------------------ChhhhcCC
Q psy3330         339 LKCDRLDLSGNNFSNIDSV-AFKSLFSLKLVKINLIPNLDSI------------------------------DQRAFVDN  387 (608)
Q Consensus       339 ~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~l~l~~~~~l~~~------------------------------~~~~f~~l  387 (608)
                      ..++.|++++|++++++.. .+.++++|+.|+++. ++++.+                              .+..|.++
T Consensus       401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l  479 (844)
T 3j0a_A          401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL  479 (844)
T ss_dssp             TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES-CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred             cccceeecccCccccCchhhhhhcCCccceeeCCC-CcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence            1234444444444443322 233455555555554 333322                              22345555


Q ss_pred             cccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330         388 IQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       388 ~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                      ++|++|+|++|+ ++.++...|.++++|+.|+|++|+|+.+|+..+. ++|+.|+|++|.+..
T Consensus       480 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~  540 (844)
T 3j0a_A          480 SHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA  540 (844)
T ss_dssp             CCEECCCCCHHH-HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCC
T ss_pred             ccccEEECCCCc-ccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCC
Confidence            666666666664 5555555566666666666666666666555554 556666666666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.7e-39  Score=355.92  Aligned_cols=357  Identities=18%  Similarity=0.235  Sum_probs=249.0

Q ss_pred             ccccccccCCCccEEEeeCCCCcc------------------cCccccc--ccccccEEEccCCCCCCCChhhhcCCCcC
Q psy3330          65 NVHYTLSFYIELRSLDLSVNKINV------------------LGSHNFE--YQNKLLNLNISYNEISALSKDTFKGLKEL  124 (608)
Q Consensus        65 ~l~~~~~~~~~L~~L~Ls~n~l~~------------------i~~~~f~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  124 (608)
                      ++|..++++++|++|+|++|.+++                  +|. .++  ++++|++|+|++|.+.+..|..|.++++|
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            355666777777777777777776                  443 455  67777777777777666555667777777


Q ss_pred             cEeeccCCc-CCc-cChhhhCCC------CCCcEEEccCCCCCccCchh--hhcCCCCccEEEccCCCCC-CCCcccccC
Q psy3330         125 KTLDLSYNK-ISV-INKTAFRDT------LHLELLILSFNNITYFEDSE--IFSSLKSLRILKLDNNQIL-DVPNNVLSN  193 (608)
Q Consensus       125 ~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~~--~~~~l~~L~~L~L~~n~l~-~~~~~~~~~  193 (608)
                      ++|++++|+ +++ ..|..+..+      ++|++|++++|.++.+  |.  .++++++|++|++++|++. .+|  .+..
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i--p~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~  351 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF--PVETSLQKMKKLGMLECLYNQLEGKLP--AFGS  351 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC--CCHHHHTTCTTCCEEECCSCCCEEECC--CCEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc--CchhhhccCCCCCEEeCcCCcCccchh--hhCC
Confidence            777777776 665 345555444      6777777777777754  33  6777777777777777777 555  4555


Q ss_pred             CCCCCceEEEccCCCCccccCCCccccCCC-ccEEEccCCCCCccCcccccCCC--ccCEEeccCCcCCCCChhhhh---
Q psy3330         194 LPHQSLHYLYLNENLIETVLDNSFPFTLTN-LHTLALSSNIISFINESSFVTLR--TLHSLDLSNNNLSAIPTKQLS---  267 (608)
Q Consensus       194 l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~l~~~~~~---  267 (608)
                      +  ++|+.|++++|.++.++ ..+.. +++ |+.|++++|.++.+ |..+..++  +|++|++++|++++..+..+.   
T Consensus       352 l--~~L~~L~L~~N~l~~lp-~~l~~-l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~  426 (636)
T 4eco_A          352 E--IKLASLNLAYNQITEIP-ANFCG-FTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD  426 (636)
T ss_dssp             E--EEESEEECCSSEEEECC-TTSEE-ECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred             C--CCCCEEECCCCcccccc-Hhhhh-hcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence            5  44777777777777443 34554 666 77777777777754 34454433  677777777777776555565   


Q ss_pred             ----CCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecE
Q psy3330         268 ----KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDR  343 (608)
Q Consensus       268 ----~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~  343 (608)
                          .+++|+.|++++|.++.+++..|..+++|+.|+++++.        +. .+|........+.     .-...++++
T Consensus       427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~--------l~-~i~~~~~~~~~~~-----~~~l~~L~~  492 (636)
T 4eco_A          427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM--------LT-EIPKNSLKDENEN-----FKNTYLLTS  492 (636)
T ss_dssp             SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC--------CS-BCCSSSSEETTEE-----CTTGGGCCE
T ss_pred             cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC--------CC-CcCHHHhcccccc-----ccccCCccE
Confidence                66677777777777777776667777777777775332        22 2332221110000     000115689


Q ss_pred             EecCCCCCCCcChhhh-cccccccccccccCCCCCcCChhhhcCCcccceeecc------cCccccccCcccCCCCCCCC
Q psy3330         344 LDLSGNNFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIIN------ENMNLKQLPSKLFQGNTNLK  416 (608)
Q Consensus       344 L~ls~n~l~~~~~~~~-~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls------~N~~l~~lp~~~f~~l~~L~  416 (608)
                      |++++|+++.++...+ ..+++|+.|+++. +.++.+ +..+..+++|++|+++      +|+..+.+|.. |..+++|+
T Consensus       493 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~  569 (636)
T 4eco_A          493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLT  569 (636)
T ss_dssp             EECCSSCCCBCCGGGSTTTCTTCCEEECCS-SCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCC
T ss_pred             EECcCCcCCccChhhhhccCCCcCEEECCC-CCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCC
Confidence            9999999998776554 5899999999998 788884 5667789999999994      56666788876 88899999


Q ss_pred             EEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330         417 SVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       417 ~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                      .|+|++|+|+.||..+.  ++|+.|++++||+.|
T Consensus       570 ~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          570 QLQIGSNDIRKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             EEECCSSCCCBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             EEECCCCcCCccCHhHh--CcCCEEECcCCCCcc
Confidence            99999999999998866  799999999999998

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-38  Score=332.21  Aligned_cols=335  Identities=21%  Similarity=0.271  Sum_probs=277.4

Q ss_pred             EEEecCCCCccccCccC-ccccEEEeccCCCcccccc-cccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC
Q psy3330          34 EASCTDAGLEVVPIQLN-PEVQTIILRENRISNVHYT-LSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS  111 (608)
Q Consensus        34 ~v~C~~~~l~~ip~~~~-~~l~~L~L~~n~i~~l~~~-~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~  111 (608)
                      .+.+........+..+. ++++.|+++++.++.+|.. +..+++|++|++++|.++.+++..|.++++|++|++++|.++
T Consensus        27 ~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  106 (390)
T 3o6n_A           27 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR  106 (390)
T ss_dssp             EECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             eeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC
Confidence            34444444333333332 6899999999999999874 688999999999999999999989999999999999999999


Q ss_pred             CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330         112 ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL  191 (608)
Q Consensus       112 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  191 (608)
                      .+++..|.++++|++|++++|+++.+++..|.++++|++|++++|.+..+. +..|..+++|++|++++|+++.++..  
T Consensus       107 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~--  183 (390)
T 3o6n_A          107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVDLS--  183 (390)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSBCCGG--
T ss_pred             cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCccccc--
Confidence            999888999999999999999999998888899999999999999999887 77899999999999999999887643  


Q ss_pred             cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCC
Q psy3330         192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA  271 (608)
Q Consensus       192 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~  271 (608)
                       .+  ++++.|++++|.++++.     . .++|+.|++++|.+..++..   ..++|+.|++++|++++.+  .+..+++
T Consensus       184 -~l--~~L~~L~l~~n~l~~~~-----~-~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~--~l~~l~~  249 (390)
T 3o6n_A          184 -LI--PSLFHANVSYNLLSTLA-----I-PIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTA--WLLNYPG  249 (390)
T ss_dssp             -GC--TTCSEEECCSSCCSEEE-----C-CSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCG--GGGGCTT
T ss_pred             -cc--cccceeecccccccccC-----C-CCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccH--HHcCCCC
Confidence             34  55899999999887653     2 56799999999999877432   3578999999999999874  6889999


Q ss_pred             CCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCC
Q psy3330         272 LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNF  351 (608)
Q Consensus       272 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l  351 (608)
                      |+.|++++|.++++.+..|..+++|+.|++                                             ++|++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---------------------------------------------~~n~l  284 (390)
T 3o6n_A          250 LVEVDLSYNELEKIMYHPFVKMQRLERLYI---------------------------------------------SNNRL  284 (390)
T ss_dssp             CSEEECCSSCCCEEESGGGTTCSSCCEEEC---------------------------------------------CSSCC
T ss_pred             ccEEECCCCcCCCcChhHccccccCCEEEC---------------------------------------------CCCcC
Confidence            999999999999988888888887766555                                             55655


Q ss_pred             CCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCC
Q psy3330         352 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS  431 (608)
Q Consensus       352 ~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~  431 (608)
                      ++++.                          .+..+++|++|++++|+ ++.+|.. +..+++|+.|+|++|+|+.++  
T Consensus       285 ~~~~~--------------------------~~~~l~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~L~~N~i~~~~--  334 (390)
T 3o6n_A          285 VALNL--------------------------YGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYLDHNSIVTLK--  334 (390)
T ss_dssp             CEEEC--------------------------SSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCSEEECCSSCCCCCC--
T ss_pred             cccCc--------------------------ccCCCCCCCEEECCCCc-ceecCcc-ccccCcCCEEECCCCccceeC--
Confidence            55431                          12446889999999997 8889887 677899999999999999987  


Q ss_pred             CCCCCCCCEEEccCCccccccCChHHHHH
Q psy3330         432 HFPLERISFLDLSDNPLHCDCNLLWLWIL  460 (608)
Q Consensus       432 ~~~l~~L~~L~L~~N~~~CdC~~~~~~~~  460 (608)
                      ...+++|+.|++++|||.|+|...|+..|
T Consensus       335 ~~~~~~L~~L~l~~N~~~~~~~~~~~~~~  363 (390)
T 3o6n_A          335 LSTHHTLKNLTLSHNDWDCNSLRALFRNV  363 (390)
T ss_dssp             CCTTCCCSEEECCSSCEEHHHHHHHTTTC
T ss_pred             chhhccCCEEEcCCCCccchhHHHHHHHH
Confidence            44678999999999999999876655443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.6e-38  Score=344.28  Aligned_cols=388  Identities=21%  Similarity=0.219  Sum_probs=283.8

Q ss_pred             ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330          53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      -+.++.++..++.+|..+.  +++++|++++|.++.+++..|.++++|++|+|++|.++.+.+.+|.++++|++|+|++|
T Consensus        14 ~~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            3468889999999998765  37999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccc
Q psy3330         133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV  212 (608)
Q Consensus       133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~  212 (608)
                      +++.+.+..|.++++|++|++++|.++.+. +..|.++++|++|++++|++.+++...+..+  ++|+.|++++|.++++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGG-GSCCTTCTTCCEEECCSSCCCCCCCCTTCCC--TTCCEEECCSSCCCEE
T ss_pred             cccccChhhhcccccccEeeccccCcccCC-cchhccCCcccEEECCCCcccccCcccccCC--cccCEEEcccCccccc
Confidence            999999999999999999999999999986 6789999999999999999999865555556  6799999999999998


Q ss_pred             cCCCccccCCCcc--EEEccCCCCCccCcccccCC---------------------------------------------
Q psy3330         213 LDNSFPFTLTNLH--TLALSSNIISFINESSFVTL---------------------------------------------  245 (608)
Q Consensus       213 ~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l---------------------------------------------  245 (608)
                      .+..|.. +++|+  .|++++|.+.++.+..|...                                             
T Consensus       169 ~~~~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~  247 (606)
T 3t6q_A          169 SKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV  247 (606)
T ss_dssp             CHHHHHT-TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred             Chhhhhh-hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH
Confidence            8777776 88888  78888888777665544321                                             


Q ss_pred             ------CccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCc
Q psy3330         246 ------RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLP  319 (608)
Q Consensus       246 ------~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp  319 (608)
                            .+|+.|++++|.++++++..|..+++|+.|++++|.++.+++ .+..+++|+.|+++++..-. ......+.+|
T Consensus       248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~  325 (606)
T 3t6q_A          248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFEN-LCQISASNFP  325 (606)
T ss_dssp             GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSB-GGGGCGGGCT
T ss_pred             hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCc-CchhhhhccC
Confidence                  045666666666666666666667777777777776665543 35666667776665432111 0000000111


Q ss_pred             hhhhcccccc-----cccc-CCCCCceecEEecCCCCCCCcC--hhhhcccccccccccccCCCCCcCChhhhcCCcccc
Q psy3330         320 PLLLSLSIPL-----AFSL-TPLGTLKCDRLDLSGNNFSNID--SVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLE  391 (608)
Q Consensus       320 ~~~~~~~~~~-----~~~~-~~~~~~~l~~L~ls~n~l~~~~--~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~  391 (608)
                      . +..+.+..     .... ......++++|++++|.++++.  +..+..+++|+.|+++. +.+..+.+..|.++++|+
T Consensus       326 ~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~  403 (606)
T 3t6q_A          326 S-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEAFKECPQLE  403 (606)
T ss_dssp             T-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS-CSCEEECTTTTTTCTTCS
T ss_pred             c-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC-CcCCcCCHHHhcCCccCC
Confidence            0 00000000     0000 0011234677788888777766  66677777777777776 667777777777777788


Q ss_pred             eeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCC-CCCCCCCEEEccCCcccc
Q psy3330         392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASH-FPLERISFLDLSDNPLHC  450 (608)
Q Consensus       392 ~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~L~~N~~~C  450 (608)
                      +|++++|+..+..+...|.++++|+.|++++|.++.+++.. ..+++|++|++++|++..
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            88887776334445555777777888888888777655443 357777788888777754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.6e-38  Score=348.98  Aligned_cols=245  Identities=26%  Similarity=0.340  Sum_probs=199.0

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK  133 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  133 (608)
                      +.++.++++++.+|..+.  +++++|++++|+++.+++..|.++++|++|+|++|.++.+++.+|.++++|++|++++|+
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            568999999999998664  799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcccc
Q psy3330         134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVL  213 (608)
Q Consensus       134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~  213 (608)
                      ++.+++..|.++++|++|++++|.+.+++ +..|+++++|++|++++|.+.++++..+..+  ++|++|++++|.+++..
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSSTKLGTQVQL--ENLQELLLSNNKIQALK  161 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCC-SCTTTTCTTCCEEECCSSCCSCCCCCSSSCC--TTCCEEECCSSCCCCBC
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccC-hhHccccCCCCEEECCCCcccccCchhhccc--ccCCEEEccCCcccccC
Confidence            99998889999999999999999999987 7889999999999999999999988888888  66999999999999887


Q ss_pred             CCCccc-cCCCccEEEccCCCCCccCcccccCC---------------------------CccCEEeccCCcCCCCChhh
Q psy3330         214 DNSFPF-TLTNLHTLALSSNIISFINESSFVTL---------------------------RTLHSLDLSNNNLSAIPTKQ  265 (608)
Q Consensus       214 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l---------------------------~~L~~L~Ls~n~l~~l~~~~  265 (608)
                      +..+.. .+++|+.|++++|.++++.+..|..+                           ++|+.|++++|.++++++..
T Consensus       162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~  241 (680)
T 1ziw_A          162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT  241 (680)
T ss_dssp             HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred             HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence            665432 25788889998888887766655433                           33455555555555555455


Q ss_pred             hhCCCC--CCEEeccCCCCCccChhhhCCCCCCceeeccC
Q psy3330         266 LSKLSA--LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL  303 (608)
Q Consensus       266 ~~~l~~--L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~  303 (608)
                      +.+++.  |+.|++++|.++++.+..|..+++|+.|++++
T Consensus       242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (680)
T 1ziw_A          242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY  281 (680)
T ss_dssp             TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence            555433  66666666666555555555555666655543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-37  Score=348.32  Aligned_cols=359  Identities=18%  Similarity=0.231  Sum_probs=271.5

Q ss_pred             cccccccCCCccEEEeeCCCCcc------------------cCccc-ccccccccEEEccCCCCCCCChhhhcCCCcCcE
Q psy3330          66 VHYTLSFYIELRSLDLSVNKINV------------------LGSHN-FEYQNKLLNLNISYNEISALSKDTFKGLKELKT  126 (608)
Q Consensus        66 l~~~~~~~~~L~~L~Ls~n~l~~------------------i~~~~-f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  126 (608)
                      +|..++++++|++|+|++|.+++                  +|+.. |.++++|++|+|++|++.+..|..|.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            67778888888999999888888                  55532 338888999999888877666678888888999


Q ss_pred             eeccCCc-CCc-cChhhhC-------CCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCC
Q psy3330         127 LDLSYNK-ISV-INKTAFR-------DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQ  197 (608)
Q Consensus       127 L~Ls~n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~  197 (608)
                      |+|++|+ +++ ..|..+.       .+++|++|++++|.++.++....|.++++|+.|++++|++..+|  .+..+  +
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L--~  595 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN--V  595 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT--S
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC--C
Confidence            9998887 776 3344444       44588999999888886531127888889999999998888777  56777  5


Q ss_pred             CceEEEccCCCCccccCCCccccCCC-ccEEEccCCCCCccCcccccCCC--ccCEEeccCCcCCCCChhh---hh--CC
Q psy3330         198 SLHYLYLNENLIETVLDNSFPFTLTN-LHTLALSSNIISFINESSFVTLR--TLHSLDLSNNNLSAIPTKQ---LS--KL  269 (608)
Q Consensus       198 ~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~l~~~~---~~--~l  269 (608)
                      +|+.|++++|.++.+ +..+.. +++ |+.|++++|.++.+ |..+..++  +|+.|++++|++++.++..   +.  .+
T Consensus       596 ~L~~L~Ls~N~l~~l-p~~l~~-l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~  672 (876)
T 4ecn_A          596 KLTDLKLDYNQIEEI-PEDFCA-FTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG  672 (876)
T ss_dssp             EESEEECCSSCCSCC-CTTSCE-ECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred             cceEEECcCCccccc-hHHHhh-ccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence            588999999888844 445665 777 99999999988865 45665554  3889999999887754321   12  34


Q ss_pred             CCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCC
Q psy3330         270 SALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGN  349 (608)
Q Consensus       270 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n  349 (608)
                      ++|+.|++++|.++.++...+..+++|+.|+++++.        +. .+|........+.     .-...++++|+|++|
T Consensus       673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~--------L~-~ip~~~~~~~~~~-----l~nl~~L~~L~Ls~N  738 (876)
T 4ecn_A          673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNL--------MT-SIPENSLKPKDGN-----YKNTYLLTTIDLRFN  738 (876)
T ss_dssp             CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC--------CS-CCCTTSSSCTTSC-----CTTGGGCCEEECCSS
T ss_pred             CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc--------CC-ccChHHhcccccc-----ccccCCccEEECCCC
Confidence            588999999999998888777788899999986432        22 3333322111000     000115689999999


Q ss_pred             CCCCcChhhh-cccccccccccccCCCCCcCChhhhcCCcccceeeccc------CccccccCcccCCCCCCCCEEEcCC
Q psy3330         350 NFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINE------NMNLKQLPSKLFQGNTNLKSVSLKG  422 (608)
Q Consensus       350 ~l~~~~~~~~-~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~------N~~l~~lp~~~f~~l~~L~~L~L~~  422 (608)
                      +++.++...+ ..+++|+.|+++. +.++.+ +..+..+++|+.|+|++      |+..+.+|.. |.++++|+.|+|++
T Consensus       739 ~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~  815 (876)
T 4ecn_A          739 KLTSLSDDFRATTLPYLSNMDVSY-NCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGS  815 (876)
T ss_dssp             CCCCCCGGGSTTTCTTCCEEECCS-SCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCS
T ss_pred             CCccchHHhhhccCCCcCEEEeCC-CCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCC
Confidence            9998775544 4899999999998 788886 55677899999999977      6656777776 88999999999999


Q ss_pred             CcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330         423 NSLSHLEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       423 N~l~~l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                      |+|+.||..+.  ++|+.|+|++||+..
T Consensus       816 N~L~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          816 NDIRKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             SCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCCCccCHhhc--CCCCEEECCCCCCCc
Confidence            99999999876  599999999999865

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.6e-38  Score=346.80  Aligned_cols=386  Identities=25%  Similarity=0.248  Sum_probs=259.0

Q ss_pred             ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330          53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      -+.++.+++.++.+|..+.  +++++|++++|.++++++..|.++++|++|++++|.++.+++.+|.++++|++|+|++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            3578999999999998664  88999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCC-cccccCCCCCCceEEEccCCCCcc
Q psy3330         133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP-NNVLSNLPHQSLHYLYLNENLIET  211 (608)
Q Consensus       133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~~~L~~L~L~~n~l~~  211 (608)
                      .++.+.+..|+++++|++|++++|.+..++ +..|+++++|++|++++|.+.++. +..+..+  ++|++|++++|.+++
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSS-SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--TTCCEEECCSSCCCE
T ss_pred             cccccChhhcCCcccCCEEEccCCcccccc-ccccCCCCCCCEEeCCCCcccceechHhHhhc--CCCCEEEccCCccee
Confidence            999999999999999999999999999987 677999999999999999998754 5668888  669999999999988


Q ss_pred             ccCCCccccCCCcc----EEEccCCCCCccCcc-----------------------------------------------
Q psy3330         212 VLDNSFPFTLTNLH----TLALSSNIISFINES-----------------------------------------------  240 (608)
Q Consensus       212 ~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~-----------------------------------------------  240 (608)
                      +.+..+.. +++|+    .|++++|.++.+.+.                                               
T Consensus       168 ~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          168 ITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             ECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             cChhhhhh-hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            77665543 32221    344444333322221                                               


Q ss_pred             -------------------------------------------------------cccCCCccCEEeccCCcCCCCCh--
Q psy3330         241 -------------------------------------------------------SFVTLRTLHSLDLSNNNLSAIPT--  263 (608)
Q Consensus       241 -------------------------------------------------------~~~~l~~L~~L~Ls~n~l~~l~~--  263 (608)
                                                                             .+..+++|++|++++|+++.+|.  
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~  326 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD  326 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCC
T ss_pred             ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCC
Confidence                                                                   23344556666666666655541  


Q ss_pred             -----------------hhhhCCCCCCEEeccCCCCCccC--hhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhc
Q psy3330         264 -----------------KQLSKLSALVNLDLSGNNFSNID--SVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLS  324 (608)
Q Consensus       264 -----------------~~~~~l~~L~~L~Ls~N~l~~~~--~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~  324 (608)
                                       ..+..+++|+.|++++|.++++.  +..+..+++|+.|+++++.. ..... ..+.++. +..
T Consensus       327 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~-~~~~l~~-L~~  403 (606)
T 3vq2_A          327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSA-NFMGLEE-LQH  403 (606)
T ss_dssp             CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECC-CCTTCTT-CCE
T ss_pred             CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchh-hccCCCC-CCe
Confidence                             12445677888888888888774  67789999999999975431 11110 0000110 000


Q ss_pred             ccc-----cccccc-CCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCc-CChhhhcCCcccceeeccc
Q psy3330         325 LSI-----PLAFSL-TPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS-IDQRAFVDNIQLETVIINE  397 (608)
Q Consensus       325 ~~~-----~~~~~~-~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~-~~~~~f~~l~~L~~L~Ls~  397 (608)
                      +.+     ...... ......++++|++++|.+++..+..+.++++|+.|+++. +.+.. +.+..|.++++|++|++++
T Consensus       404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~  482 (606)
T 3vq2_A          404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSK  482 (606)
T ss_dssp             EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC-CcCCCcchHHhhccCCCCCEEECCC
Confidence            000     000000 000112345555555555555555555555555555555 34433 3344555555566666655


Q ss_pred             CccccccCcccCCCCCCCCEEEcCCCccccc-CCCCCCCCCCCEEEccCCccc
Q psy3330         398 NMNLKQLPSKLFQGNTNLKSVSLKGNSLSHL-EASHFPLERISFLDLSDNPLH  449 (608)
Q Consensus       398 N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~L~~N~~~  449 (608)
                      |+ +..+++..|.++++|+.|+|++|+++.+ |..+..+++|++|++++|++.
T Consensus       483 n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          483 CQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             SC-CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             Cc-CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            54 4444444455555666666666655544 333334555666666665554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-37  Score=341.26  Aligned_cols=334  Identities=22%  Similarity=0.271  Sum_probs=280.4

Q ss_pred             eEEEecCCCCccccCccC-ccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCC
Q psy3330          33 LEASCTDAGLEVVPIQLN-PEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEI  110 (608)
Q Consensus        33 ~~v~C~~~~l~~ip~~~~-~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i  110 (608)
                      ..++|........+..+. .+++.+++++|.++.+|. .+..+++|++|+|++|.++.+++..|+.+++|++|+|++|.+
T Consensus        32 ~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  111 (597)
T 3oja_B           32 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI  111 (597)
T ss_dssp             CEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC
Confidence            345555544444444443 689999999999999987 468899999999999999999999999999999999999999


Q ss_pred             CCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCccc
Q psy3330         111 SALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV  190 (608)
Q Consensus       111 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  190 (608)
                      +.+++..|+++++|++|+|++|.++.+++..|.++++|++|++++|.+.++. +..|.++++|++|++++|.++.++.. 
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~-  189 (597)
T 3oja_B          112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVDLS-  189 (597)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSBCCGG-
T ss_pred             CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCCcChh-
Confidence            9999999999999999999999999998888999999999999999999987 78899999999999999999988644 


Q ss_pred             ccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCC
Q psy3330         191 LSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLS  270 (608)
Q Consensus       191 ~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~  270 (608)
                        .+  ++|+.|++++|.++++.     . ..+|+.|++++|.+..+....   .++|+.|++++|.+++.  ..+..++
T Consensus       190 --~l--~~L~~L~l~~n~l~~l~-----~-~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~  254 (597)
T 3oja_B          190 --LI--PSLFHANVSYNLLSTLA-----I-PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYP  254 (597)
T ss_dssp             --GC--TTCSEEECCSSCCSEEE-----C-CTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCT
T ss_pred             --hh--hhhhhhhcccCcccccc-----C-CchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCC
Confidence              34  55999999999888653     2 568999999999998775433   36899999999999986  4688999


Q ss_pred             CCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCC
Q psy3330         271 ALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNN  350 (608)
Q Consensus       271 ~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~  350 (608)
                      +|+.|+|++|.++++.+..|..+++|+.|++                                             ++|.
T Consensus       255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L---------------------------------------------s~N~  289 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYI---------------------------------------------SNNR  289 (597)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTCSSCCEEEC---------------------------------------------TTSC
T ss_pred             CCCEEECCCCccCCCCHHHhcCccCCCEEEC---------------------------------------------CCCC
Confidence            9999999999999998888888887765555                                             5666


Q ss_pred             CCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCC
Q psy3330         351 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA  430 (608)
Q Consensus       351 l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~  430 (608)
                      +++++.                          .+..+++|+.|+|++|. +..+|.. +..+++|+.|+|++|.|+.++ 
T Consensus       290 l~~l~~--------------------------~~~~l~~L~~L~Ls~N~-l~~i~~~-~~~l~~L~~L~L~~N~l~~~~-  340 (597)
T 3oja_B          290 LVALNL--------------------------YGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYLDHNSIVTLK-  340 (597)
T ss_dssp             CCEEEC--------------------------SSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCSEEECCSSCCCCCC-
T ss_pred             CCCCCc--------------------------ccccCCCCcEEECCCCC-CCccCcc-cccCCCCCEEECCCCCCCCcC-
Confidence            665431                          12346889999999997 8889887 678999999999999999887 


Q ss_pred             CCCCCCCCCEEEccCCccccccCChHHH
Q psy3330         431 SHFPLERISFLDLSDNPLHCDCNLLWLW  458 (608)
Q Consensus       431 ~~~~l~~L~~L~L~~N~~~CdC~~~~~~  458 (608)
                       ...+++|+.|++++|||.|+|...|+.
T Consensus       341 -~~~~~~L~~L~l~~N~~~~~~~~~~~~  367 (597)
T 3oja_B          341 -LSTHHTLKNLTLSHNDWDCNSLRALFR  367 (597)
T ss_dssp             -CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred             -hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence             445789999999999999998665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.4e-37  Score=341.41  Aligned_cols=383  Identities=19%  Similarity=0.217  Sum_probs=315.2

Q ss_pred             CCccccCccC--ccccEEEeccCCCcc------------------cccccc--cCCCccEEEeeCCCCcccCcccccccc
Q psy3330          41 GLEVVPIQLN--PEVQTIILRENRISN------------------VHYTLS--FYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        41 ~l~~ip~~~~--~~l~~L~L~~n~i~~------------------l~~~~~--~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      .++.+|..+.  +++++|+|++|.+++                  +|..++  ++++|++|++++|.+.+..+..|.+++
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  273 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP  273 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred             CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence            4566787663  699999999999999                  999988  999999999999998887778999999


Q ss_pred             cccEEEccCCC-CCC-CChhhhcCC------CcCcEeeccCCcCCccCh-hhhCCCCCCcEEEccCCCCCccCchhhhcC
Q psy3330          99 KLLNLNISYNE-ISA-LSKDTFKGL------KELKTLDLSYNKISVINK-TAFRDTLHLELLILSFNNITYFEDSEIFSS  169 (608)
Q Consensus        99 ~L~~L~Ls~n~-i~~-~~~~~~~~l------~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  169 (608)
                      +|++|++++|+ +++ ..|..+..+      ++|++|++++|+++.++. ..|.++++|++|++++|.+.+.. | .|..
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p-~~~~  351 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-P-AFGS  351 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC-C-CCEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch-h-hhCC
Confidence            99999999998 886 445566665      999999999999997654 38999999999999999999544 5 7999


Q ss_pred             CCCccEEEccCCCCCCCCcccccCCCCCC-ceEEEccCCCCccccCCCccc-cCCCccEEEccCCCCCccCccccc----
Q psy3330         170 LKSLRILKLDNNQILDVPNNVLSNLPHQS-LHYLYLNENLIETVLDNSFPF-TLTNLHTLALSSNIISFINESSFV----  243 (608)
Q Consensus       170 l~~L~~L~L~~n~l~~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~----  243 (608)
                      +++|++|++++|+++.+|.. +..+  ++ |+.|++++|.++.++. .+.. .+++|+.|++++|.+++..|..|.    
T Consensus       352 l~~L~~L~L~~N~l~~lp~~-l~~l--~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  427 (636)
T 4eco_A          352 EIKLASLNLAYNQITEIPAN-FCGF--TEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP  427 (636)
T ss_dssp             EEEESEEECCSSEEEECCTT-SEEE--CTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred             CCCCCEEECCCCccccccHh-hhhh--cccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence            99999999999999988765 5566  56 9999999999996654 4443 134899999999999998888887    


Q ss_pred             ---CCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCC-------CCceeeccCCCCCCCCCcc
Q psy3330         244 ---TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLF-------SLKLVKINLIPNLDSIDQP  313 (608)
Q Consensus       244 ---~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~-------~L~~L~l~~~~~l~~~~~~  313 (608)
                         .+++|++|++++|+++++|+..+..+++|+.|++++|+++.+++..+....       +|+.|+++++        .
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N--------~  499 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN--------K  499 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS--------C
T ss_pred             ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC--------c
Confidence               788999999999999999998888999999999999999988877665543       9999999643        2


Q ss_pred             cccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccccc-----CCCCCcCChhhhcCCc
Q psy3330         314 LSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINL-----IPNLDSIDQRAFVDNI  388 (608)
Q Consensus       314 ~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~-----~~~l~~~~~~~f~~l~  388 (608)
                      +. .+|..+..           ....++++|++++|+++++ |..+.++++|+.|++++     .+++....+..|.+++
T Consensus       500 l~-~lp~~~~~-----------~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~  566 (636)
T 4eco_A          500 LT-KLSDDFRA-----------TTLPYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP  566 (636)
T ss_dssp             CC-BCCGGGST-----------TTCTTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred             CC-ccChhhhh-----------ccCCCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence            22 34443320           0122568999999999995 56777899999999954     3567777788999999


Q ss_pred             ccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-C--CCCCCEEEccCCccccccCC
Q psy3330         389 QLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-P--LERISFLDLSDNPLHCDCNL  454 (608)
Q Consensus       389 ~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~--l~~L~~L~L~~N~~~CdC~~  454 (608)
                      +|++|++++|+ ++.+|...+   ++|+.|+|++|.+..++...+ +  ......+....+...++|+.
T Consensus       567 ~L~~L~Ls~N~-l~~ip~~~~---~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~  631 (636)
T 4eco_A          567 SLTQLQIGSND-IRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA  631 (636)
T ss_dssp             SCCEEECCSSC-CCBCCSCCC---TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred             CCCEEECCCCc-CCccCHhHh---CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcc
Confidence            99999999998 799998743   899999999999998875544 1  23455666666777778864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.4e-37  Score=343.38  Aligned_cols=381  Identities=19%  Similarity=0.204  Sum_probs=308.2

Q ss_pred             CCccccCccC--ccccEEEeccCCCcc------------------cccccc--cCCCccEEEeeCCCCcccCcccccccc
Q psy3330          41 GLEVVPIQLN--PEVQTIILRENRISN------------------VHYTLS--FYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        41 ~l~~ip~~~~--~~l~~L~L~~n~i~~------------------l~~~~~--~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      .++.+|..+.  +++++|+|++|.+++                  +|..++  ++++|++|+|++|++.+..+..|.+++
T Consensus       436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~  515 (876)
T 4ecn_A          436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP  515 (876)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred             cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence            3445776654  689999999999998                  898877  999999999999998876678899999


Q ss_pred             cccEEEccCCC-CCC-CChhhhcCC-------CcCcEeeccCCcCCccCh-hhhCCCCCCcEEEccCCCCCccCchhhhc
Q psy3330          99 KLLNLNISYNE-ISA-LSKDTFKGL-------KELKTLDLSYNKISVINK-TAFRDTLHLELLILSFNNITYFEDSEIFS  168 (608)
Q Consensus        99 ~L~~L~Ls~n~-i~~-~~~~~~~~l-------~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  168 (608)
                      +|++|+|++|+ +++ ..|..+..+       ++|++|+|++|+++.++. ..|.++++|+.|++++|.+..+  | .|.
T Consensus       516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l--p-~~~  592 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--E-AFG  592 (876)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC--C-CCC
T ss_pred             CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc--h-hhc
Confidence            99999999998 886 334445544       599999999999997754 4899999999999999999955  4 799


Q ss_pred             CCCCccEEEccCCCCCCCCcccccCCCCCC-ceEEEccCCCCccccCCCccccC--CCccEEEccCCCCCccCcccc---
Q psy3330         169 SLKSLRILKLDNNQILDVPNNVLSNLPHQS-LHYLYLNENLIETVLDNSFPFTL--TNLHTLALSSNIISFINESSF---  242 (608)
Q Consensus       169 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~---  242 (608)
                      .+++|+.|++++|++..+|.. +..+  ++ |+.|++++|.++.++ ..+.. +  ++|+.|++++|.+.+..+...   
T Consensus       593 ~L~~L~~L~Ls~N~l~~lp~~-l~~l--~~~L~~L~Ls~N~L~~lp-~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l  667 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIEEIPED-FCAF--TDQVEGLGFSHNKLKYIP-NIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSM  667 (876)
T ss_dssp             TTSEESEEECCSSCCSCCCTT-SCEE--CTTCCEEECCSSCCCSCC-SCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred             CCCcceEEECcCCccccchHH-Hhhc--cccCCEEECcCCCCCcCc-hhhhc-cccCCCCEEECcCCcCCCccccchhhh
Confidence            999999999999999977765 5555  55 999999999999664 45543 4  349999999999987654322   


Q ss_pred             c--CCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCC-------CCCceeeccCCCCCCCCCcc
Q psy3330         243 V--TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL-------FSLKLVKINLIPNLDSIDQP  313 (608)
Q Consensus       243 ~--~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l-------~~L~~L~l~~~~~l~~~~~~  313 (608)
                      .  .+++|+.|++++|+++.+|...+..+++|+.|+|++|+++.++...+...       ++|+.|+++++.        
T Consensus       668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~--------  739 (876)
T 4ecn_A          668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK--------  739 (876)
T ss_dssp             TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC--------
T ss_pred             ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC--------
Confidence            2  34589999999999999998888899999999999999998887766544       389999997542        


Q ss_pred             cccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccccc-----CCCCCcCChhhhcCCc
Q psy3330         314 LSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINL-----IPNLDSIDQRAFVDNI  388 (608)
Q Consensus       314 ~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~-----~~~l~~~~~~~f~~l~  388 (608)
                      +. .+|..+..           ....+++.|++++|+++++ +..+.++++|+.|+++.     .+++....+..|.+++
T Consensus       740 L~-~lp~~l~~-----------~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          740 LT-SLSDDFRA-----------TTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             CC-CCCGGGST-----------TTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             Cc-cchHHhhh-----------ccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence            22 34443320           0122568999999999996 55677999999999975     2566777788999999


Q ss_pred             ccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCcccc--ccCC
Q psy3330         389 QLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHC--DCNL  454 (608)
Q Consensus       389 ~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~C--dC~~  454 (608)
                      +|++|+|++|+ ++.+|...+   ++|+.|||++|.+..++...+ +...+..+.|.+|++.+  +|+.
T Consensus       807 ~L~~L~Ls~N~-L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~  871 (876)
T 4ecn_A          807 SLIQLQIGSND-IRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA  871 (876)
T ss_dssp             SCCEEECCSSC-CCBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred             CCCEEECCCCC-CCccCHhhc---CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence            99999999998 799999843   699999999999998876555 33455667788888766  8874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6e-37  Score=331.50  Aligned_cols=367  Identities=20%  Similarity=0.180  Sum_probs=273.1

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK  133 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  133 (608)
                      ++|++++|.++.+|..+.  ++|++|++++|.++++++..|.++++|++|+|++|+++++.+.+|.++++|++|+|++|+
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            689999999999998766  899999999999999999999999999999999999999988999999999999999999


Q ss_pred             CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCc--eEEEccCCCC--
Q psy3330         134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL--HYLYLNENLI--  209 (608)
Q Consensus       134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L--~~L~L~~n~l--  209 (608)
                      ++.++..   .+++|++|++++|.++++..|..|+++++|++|++++|.+..   ..+..+  +++  +.|++++|.+  
T Consensus        81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l--~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPI--AHLNISKVLLVLGETYG  152 (520)
T ss_dssp             CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGG--TTSCEEEEEEEECTTTT
T ss_pred             eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccc--ccceeeEEEeecccccc
Confidence            9988655   799999999999999986547889999999999999999876   345555  446  9999999998  


Q ss_pred             ccccCCCccc-------------------------cCCCccEEEccCCC-------CCccCcccccC-------------
Q psy3330         210 ETVLDNSFPF-------------------------TLTNLHTLALSSNI-------ISFINESSFVT-------------  244 (608)
Q Consensus       210 ~~~~~~~~~~-------------------------~l~~L~~L~L~~n~-------l~~~~~~~~~~-------------  244 (608)
                      .+..+..+..                         .+++|+.+++++|.       +.+..+ .+.+             
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            5555544433                         14556666666664       111111 1111             


Q ss_pred             --------------CCccCEEeccCCcCC-CCChhhh-----hCCCCCCEEeccCCCCCccChhhhCCC---CCCceeec
Q psy3330         245 --------------LRTLHSLDLSNNNLS-AIPTKQL-----SKLSALVNLDLSGNNFSNIDSVAFKSL---FSLKLVKI  301 (608)
Q Consensus       245 --------------l~~L~~L~Ls~n~l~-~l~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~f~~l---~~L~~L~l  301 (608)
                                    .++|++|++++|+++ .+|. .+     ..+++|+.+++++|.+ .++...+..+   .+|+.|++
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF-RDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC-CCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEE
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCcccc-chhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEc
Confidence                          237888888888887 4554 44     6777777777777777 4443222222   23444444


Q ss_pred             cCCCCCCC--------------CCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcCh--hhhcccccc
Q psy3330         302 NLIPNLDS--------------IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS--VAFKSLFSL  365 (608)
Q Consensus       302 ~~~~~l~~--------------~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~--~~~~~l~~L  365 (608)
                      +++.....              ..+.+.+.+|..+.             ...++++|++++|++++++.  ..+..+++|
T Consensus       310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------------~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L  376 (520)
T 2z7x_B          310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG-------------HLTELETLILQMNQLKELSKIAEMTTQMKSL  376 (520)
T ss_dssp             ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC-------------CCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred             CCCccccccchhhCCcccEEEeECCccChhhhhhhc-------------cCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence            33221000              01222222222111             12256889999999988554  668888899


Q ss_pred             cccccccCCCCCc-CChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEcc
Q psy3330         366 KLVKINLIPNLDS-IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLS  444 (608)
Q Consensus       366 ~~l~l~~~~~l~~-~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~  444 (608)
                      +.|+++. +.+.. ++...|..+++|++|++++|+..+.+|.. +.  ++|+.|+|++|+|+.+|..++.+++|++|+++
T Consensus       377 ~~L~Ls~-N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          377 QQLDISQ-NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             CEEECCS-SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECC
T ss_pred             CEEECCC-CcCCcccccchhccCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCCcccccchhhhcCCCCCEEECC
Confidence            9999987 77776 77677888889999999998844556554 32  78999999999999999888889999999999


Q ss_pred             CCcccc
Q psy3330         445 DNPLHC  450 (608)
Q Consensus       445 ~N~~~C  450 (608)
                      +|++..
T Consensus       453 ~N~l~~  458 (520)
T 2z7x_B          453 SNQLKS  458 (520)
T ss_dssp             SSCCCC
T ss_pred             CCcCCc
Confidence            999983

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7e-37  Score=333.32  Aligned_cols=369  Identities=18%  Similarity=0.201  Sum_probs=264.5

Q ss_pred             EEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcC
Q psy3330          55 TIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKI  134 (608)
Q Consensus        55 ~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  134 (608)
                      ..+.+++.++.+|..+.  ++|++|++++|+++++++..|.++++|++|++++|+++.+++++|.++++|++|++++|++
T Consensus         9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             eEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            36788899999998664  7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCC-CCCCCcccccCCCCCCceEEEccCCCCcccc
Q psy3330         135 SVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ-ILDVPNNVLSNLPHQSLHYLYLNENLIETVL  213 (608)
Q Consensus       135 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~  213 (608)
                      +++++..|+++++|++|++++|.++.+..+..|+++++|++|++++|. +..+++..+..+  ++|++|++++|.+++..
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~  164 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL--TSLNELEIKALSLRNYQ  164 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC--CEEEEEEEEETTCCEEC
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc--cccCeeeccCCcccccC
Confidence            999999999999999999999999976546789999999999999998 777887788888  56999999999999988


Q ss_pred             CCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC---hhhh------------------------
Q psy3330         214 DNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP---TKQL------------------------  266 (608)
Q Consensus       214 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~------------------------  266 (608)
                      +..+.. +++|+.|++++|.+..+....+..+++|++|++++|++++++   ....                        
T Consensus       165 ~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          165 SQSLKS-IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             TTTTTT-CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             hhhhhc-cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence            888876 777888887777776654444456677777777777776642   0001                        


Q ss_pred             ----h-----------------------------------------------------------CCCCCCEEeccCCCCC
Q psy3330         267 ----S-----------------------------------------------------------KLSALVNLDLSGNNFS  283 (608)
Q Consensus       267 ----~-----------------------------------------------------------~l~~L~~L~Ls~N~l~  283 (608)
                          .                                                           ..++|+.|++++|.++
T Consensus       244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~  323 (549)
T 2z81_A          244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF  323 (549)
T ss_dssp             HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred             HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence                1                                                           1234445555555555


Q ss_pred             ccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcCh--hhhcc
Q psy3330         284 NIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS--VAFKS  361 (608)
Q Consensus       284 ~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~--~~~~~  361 (608)
                      .++...+..+++|+.|+++++.        +.+.+|.....          .....++++|++++|+++++++  ..+..
T Consensus       324 ~ip~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~~~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  385 (549)
T 2z81_A          324 LVPCSFSQHLKSLEFLDLSENL--------MVEEYLKNSAC----------KGAWPSLQTLVLSQNHLRSMQKTGEILLT  385 (549)
T ss_dssp             CCCHHHHHHCTTCCEEECCSSC--------CCHHHHHHHTC----------TTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred             cCCHHHHhcCccccEEEccCCc--------cccccccchhh----------hhccccCcEEEccCCcccccccchhhhhc
Confidence            4444444455666666664322        22211111000          0011245777777777777654  45677


Q ss_pred             cccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccC-----------------CCCCCCCEEEcCCCc
Q psy3330         362 LFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLF-----------------QGNTNLKSVSLKGNS  424 (608)
Q Consensus       362 l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f-----------------~~l~~L~~L~L~~N~  424 (608)
                      +++|+.|+++. ++++.++ ..+..+++|++|++++|+ ++.+|...+                 .++++|++|+|++|+
T Consensus       386 l~~L~~L~Ls~-N~l~~lp-~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~  462 (549)
T 2z81_A          386 LKNLTSLDISR-NTFHPMP-DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK  462 (549)
T ss_dssp             CTTCCEEECTT-CCCCCCC-SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCCEEECCC-CCCccCC-hhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc
Confidence            77777777776 5666543 345556667777777765 555554321                 245666666666666


Q ss_pred             ccccCCCCCCCCCCCEEEccCCcccc
Q psy3330         425 LSHLEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       425 l~~l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                      |+.||.. ..+++|++|+|++|++..
T Consensus       463 l~~ip~~-~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          463 LKTLPDA-SLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             CSSCCCG-GGCTTCCEEECCSSCCCC
T ss_pred             cCcCCCc-ccCccCCEEecCCCccCC
Confidence            6666652 345666777777776664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=318.37  Aligned_cols=305  Identities=21%  Similarity=0.311  Sum_probs=191.6

Q ss_pred             ccccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccc
Q psy3330          16 KLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNF   94 (608)
Q Consensus        16 ~~~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f   94 (608)
                      ...+..|+..|.|.... .++|++.+++++|..+++++++|++++|.++.++. .+.++++|++|++++|+++++++..|
T Consensus        18 ~~~~~~~~~~~~C~~~~-~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (353)
T 2z80_A           18 SKEESSNQASLSCDRNG-ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF   96 (353)
T ss_dssp             ---------CCEECTTS-EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             cCccCCCccCCCCCCCe-EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence            34556788889997543 48999999999999888888888777777777665 56666666666666666666666566


Q ss_pred             cccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330          95 EYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR  174 (608)
Q Consensus        95 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  174 (608)
                      .++++|++|++++|.++.+++..|.++++|++|++++|+++.++.                        ...|..+++|+
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------------------------~~~~~~l~~L~  152 (353)
T 2z80_A           97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE------------------------TSLFSHLTKLQ  152 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS------------------------SCSCTTCTTCC
T ss_pred             CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc------------------------hhhhccCCCCc
Confidence            666666666666666666555555555555555555555554433                        02344444444


Q ss_pred             EEEccCC-CCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330         175 ILKLDNN-QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL  253 (608)
Q Consensus       175 ~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  253 (608)
                      +|++++| .+..+++                          ..|.. +++|+.|++++|.++++.+..+..+++|++|++
T Consensus       153 ~L~l~~n~~~~~~~~--------------------------~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          153 ILRVGNMDTFTKIQR--------------------------KDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             EEEEEESSSCCEECT--------------------------TTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             EEECCCCccccccCH--------------------------HHccC-CCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            4444443 1222222                          22222 444555555555555555556666777777777


Q ss_pred             cCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCC---CCCCceeeccCCCCCCCCCcccccCCchhhhccccccc
Q psy3330         254 SNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKS---LFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLA  330 (608)
Q Consensus       254 s~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~---l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~  330 (608)
                      ++|+++.++...+..+++|+.|++++|.+++.....+..   ...+                                  
T Consensus       206 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l----------------------------------  251 (353)
T 2z80_A          206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI----------------------------------  251 (353)
T ss_dssp             ECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC----------------------------------
T ss_pred             CCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh----------------------------------
Confidence            777777777666667788888888888777655332211   1111                                  


Q ss_pred             cccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCC
Q psy3330         331 FSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ  410 (608)
Q Consensus       331 ~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~  410 (608)
                                 +.+++++                                            +.++++. +..+|.. |.
T Consensus       252 -----------~~l~L~~--------------------------------------------~~l~~~~-l~~l~~~-l~  274 (353)
T 2z80_A          252 -----------KKFTFRN--------------------------------------------VKITDES-LFQVMKL-LN  274 (353)
T ss_dssp             -----------CEEEEES--------------------------------------------CBCCHHH-HHHHHHH-HH
T ss_pred             -----------hcccccc--------------------------------------------ccccCcc-hhhhHHH-Hh
Confidence                       1222222                                            2233333 4456654 77


Q ss_pred             CCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHh
Q psy3330         411 GNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQL  463 (608)
Q Consensus       411 ~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~  463 (608)
                      .+++|+.|+|++|+++.+|..++ .+++|++|++++|||.|+|+ +.|+..|.+.
T Consensus       275 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~  329 (353)
T 2z80_A          275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  329 (353)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             cccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence            88999999999999999999875 78999999999999999996 8899999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.8e-35  Score=311.78  Aligned_cols=344  Identities=27%  Similarity=0.387  Sum_probs=275.2

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      +++++|+++++.++.++. +..+++|++|++++|.++.+++  |.++++|++|++++|.++.+++  +.++++|++|+++
T Consensus        46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  120 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  120 (466)
T ss_dssp             HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence            578888888888888764 7778888888888888888876  7888888888888888888775  8888888888888


Q ss_pred             CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330         131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~  210 (608)
                      +|.++.+++  +.++++|++|++++|.+..+.   .+..+++|++|+++ |.+..+++  +..+  ++|+.|++++|.++
T Consensus       121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~-~~~~~~~~--~~~l--~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          121 NNQITDIDP--LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFG-NQVTDLKP--LANL--TTLERLDISSNKVS  190 (466)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEE-ESCCCCGG--GTTC--TTCCEEECCSSCCC
T ss_pred             CCCCCCChH--HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecC-CcccCchh--hccC--CCCCEEECcCCcCC
Confidence            888888754  788888888888888887763   37888888888886 45555443  5666  55888888888887


Q ss_pred             cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330         211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF  290 (608)
Q Consensus       211 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f  290 (608)
                      ++.  .+.. +++|+.|++++|.+.++.+  +..+++|++|++++|++++++  .+..+++|+.|++++|.++++.+  +
T Consensus       191 ~~~--~l~~-l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~  261 (466)
T 1o6v_A          191 DIS--VLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--L  261 (466)
T ss_dssp             CCG--GGGG-CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCh--hhcc-CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccchh--h
Confidence            764  3555 8888888888888887654  667888888888888888874  57888888889998888888765  7


Q ss_pred             CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccc
Q psy3330         291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI  370 (608)
Q Consensus       291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l  370 (608)
                      ..+++|+.|+++++.        +.+ +++ +.             ...++++|++++|+++++++  +..+++|+.|++
T Consensus       262 ~~l~~L~~L~l~~n~--------l~~-~~~-~~-------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L  316 (466)
T 1o6v_A          262 SGLTKLTELKLGANQ--------ISN-ISP-LA-------------GLTALTNLELNENQLEDISP--ISNLKNLTYLTL  316 (466)
T ss_dssp             TTCTTCSEEECCSSC--------CCC-CGG-GT-------------TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred             hcCCCCCEEECCCCc--------cCc-ccc-cc-------------CCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence            888888888886432        111 111 10             11245889999999998876  788999999999


Q ss_pred             ccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330         371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                      +. +.+..+.+  +..+++|++|++++|+ +..++.  +..+++|+.|++++|+++.+++ +..+++|+.|++++|+|.+
T Consensus       317 ~~-n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          317 YF-NNISDISP--VSSLTKLQRLFFYNNK-VSDVSS--LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CS-SCCSCCGG--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             cC-CcCCCchh--hccCccCCEeECCCCc-cCCchh--hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            88 67777655  7789999999999997 777753  8899999999999999998876 6788999999999999987

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-35  Score=323.29  Aligned_cols=363  Identities=20%  Similarity=0.216  Sum_probs=279.5

Q ss_pred             ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330          53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      .+++++++|.++.+|..+.  ++|++|++++|.++.+++..|.++++|++|+|++|+++.+++++|.++++|++|++++|
T Consensus        33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            3889999999999998664  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC--c
Q psy3330         133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI--E  210 (608)
Q Consensus       133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l--~  210 (608)
                      +++.++..   .+++|++|++++|.+++++.+..|+++++|++|++++|++....   +..++.-.|+.|++++|.+  +
T Consensus       111 ~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~  184 (562)
T 3a79_B          111 RLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIK  184 (562)
T ss_dssp             CCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred             cCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccccc
Confidence            99988765   79999999999999998764688999999999999999988643   3344221249999999999  6


Q ss_pred             cccCCCccc-------------------------cCCCccEEEccCCCCC------------------------------
Q psy3330         211 TVLDNSFPF-------------------------TLTNLHTLALSSNIIS------------------------------  235 (608)
Q Consensus       211 ~~~~~~~~~-------------------------~l~~L~~L~L~~n~l~------------------------------  235 (608)
                      +..+..+..                         .+++|+.+++++|...                              
T Consensus       185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~  264 (562)
T 3a79_B          185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK  264 (562)
T ss_dssp             SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred             ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence            666665554                         1335566666665310                              


Q ss_pred             ---ccCcccccCCCccCEEeccCCcCC-CCChhhh----hCC--------------------------CCCCEEeccCCC
Q psy3330         236 ---FINESSFVTLRTLHSLDLSNNNLS-AIPTKQL----SKL--------------------------SALVNLDLSGNN  281 (608)
Q Consensus       236 ---~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~----~~l--------------------------~~L~~L~Ls~N~  281 (608)
                         ++.+  ....++|++|++++|.++ .+|...+    ..+                          .+|+.|++++|.
T Consensus       265 ~~~~~~~--~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~  342 (562)
T 3a79_B          265 CSVKLFQ--FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP  342 (562)
T ss_dssp             HHHHHHH--HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHH--hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence               0000  011247889999999988 4554322    233                          346666666666


Q ss_pred             CCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcCh--hhh
Q psy3330         282 FSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDS--VAF  359 (608)
Q Consensus       282 l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~--~~~  359 (608)
                      +.....  ...+++|+.|+++++        .+.+..|..+.             ...++++|++++|++++++.  ..|
T Consensus       343 ~~~~~~--~~~l~~L~~L~l~~n--------~l~~~~~~~~~-------------~l~~L~~L~L~~N~l~~~~~~~~~~  399 (562)
T 3a79_B          343 FIHMVC--PPSPSSFTFLNFTQN--------VFTDSVFQGCS-------------TLKRLQTLILQRNGLKNFFKVALMT  399 (562)
T ss_dssp             CCCCCC--CSSCCCCCEEECCSS--------CCCTTTTTTCC-------------SCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred             cccccC--ccCCCCceEEECCCC--------ccccchhhhhc-------------ccCCCCEEECCCCCcCCcccchhhh
Confidence            544331  256777888887532        23332332221             12256899999999999775  568


Q ss_pred             cccccccccccccCCCCCc-CChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCC
Q psy3330         360 KSLFSLKLVKINLIPNLDS-IDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERI  438 (608)
Q Consensus       360 ~~l~~L~~l~l~~~~~l~~-~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L  438 (608)
                      .++++|+.|+++. +.++. ++...|.++++|++|++++|++.+.+|.. +.  ++|+.|+|++|+|+.||++++.+++|
T Consensus       400 ~~l~~L~~L~l~~-N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~--~~L~~L~L~~N~l~~ip~~~~~l~~L  475 (562)
T 3a79_B          400 KNMSSLETLDVSL-NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-LP--PKVKVLDLHNNRIMSIPKDVTHLQAL  475 (562)
T ss_dssp             TTCTTCCEEECTT-SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS-CC--TTCSEEECCSSCCCCCCTTTTSSCCC
T ss_pred             cCCCCCCEEECCC-CcCCCccChhhhcCcccCCEEECCCCCCCcchhhh-hc--CcCCEEECCCCcCcccChhhcCCCCC
Confidence            8999999999998 77777 77788999999999999999844555543 22  79999999999999999999999999


Q ss_pred             CEEEccCCccccccC
Q psy3330         439 SFLDLSDNPLHCDCN  453 (608)
Q Consensus       439 ~~L~L~~N~~~CdC~  453 (608)
                      ++|++++|.+. ..+
T Consensus       476 ~~L~L~~N~l~-~l~  489 (562)
T 3a79_B          476 QELNVASNQLK-SVP  489 (562)
T ss_dssp             SEEECCSSCCC-CCC
T ss_pred             CEEECCCCCCC-CCC
Confidence            99999999998 444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.5e-36  Score=317.84  Aligned_cols=356  Identities=23%  Similarity=0.300  Sum_probs=284.8

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC-CCChhhhcCCCcCcEeeccCC
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS-ALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      +.++.+++.++.+|. +  .++|++|+|++|.++++++..|.++++|++|++++|.+. .+++.+|.++++|++|+|++|
T Consensus        13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            457788888999887 3  378999999999999998889999999999999999987 677788999999999999999


Q ss_pred             cCCccChhhhCCCCCCcEEEccCCCCCccC-chhhhcCCCCccEEEccCCCCCCCCccc-ccCCCCCCceEEEccCCCCc
Q psy3330         133 KISVINKTAFRDTLHLELLILSFNNITYFE-DSEIFSSLKSLRILKLDNNQILDVPNNV-LSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~~L~L~~n~l~  210 (608)
                      +++.+.+..|.++++|++|++++|.+++.. ....|..+++|++|++++|.+.++.+.. +..+  ++|++|++++|.++
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~  167 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM--RRFHVLDLTFNKVK  167 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC--TTCCEEECTTCCBS
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC--CcccEEeCCCCccc
Confidence            999998999999999999999999998743 1334889999999999999998886554 6777  55899999999888


Q ss_pred             cccCCCccccC--CCccEEEccCCCCCccCcccc--------cCCCccCEEeccCCcCCCCChhhhhCC---CCCCEEec
Q psy3330         211 TVLDNSFPFTL--TNLHTLALSSNIISFINESSF--------VTLRTLHSLDLSNNNLSAIPTKQLSKL---SALVNLDL  277 (608)
Q Consensus       211 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~l~~~~~~~l---~~L~~L~L  277 (608)
                      +..+..+.. +  .+++.|++++|.+..+.+..+        ..+++|++|++++|++++..+..+...   ++|+.|++
T Consensus       168 ~~~~~~l~~-l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          168 SICEEDLLN-FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             CCCTTTSGG-GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             ccChhhhhc-cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            887777664 4  578888888888877655432        245677788888887776555554443   67777777


Q ss_pred             cCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChh
Q psy3330         278 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV  357 (608)
Q Consensus       278 s~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~  357 (608)
                      ++|.+.+.... ...+..+...                                .+......++++|++++|+++++.+.
T Consensus       247 ~~~~~~~~~~~-~~~~~~~~~~--------------------------------~~~~~~~~~L~~L~l~~n~l~~~~~~  293 (455)
T 3v47_A          247 SNSYNMGSSFG-HTNFKDPDNF--------------------------------TFKGLEASGVKTCDLSKSKIFALLKS  293 (455)
T ss_dssp             TTCTTTSCCTT-CCSSCCCCTT--------------------------------TTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred             ccccccccccc-hhhhccCccc--------------------------------ccccccccCceEEEecCccccccchh
Confidence            77765543211 1111111100                                00011123568999999999999999


Q ss_pred             hhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCC-CCCCCC
Q psy3330         358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEA-SHFPLE  436 (608)
Q Consensus       358 ~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~-~~~~l~  436 (608)
                      .|..+++|+.|+++. +.++.+.+..|.++++|++|++++|+ ++.++...|.++++|++|+|++|+++.+++ .+..++
T Consensus       294 ~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hcccCCCCCEEECCC-CcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            999999999999998 88999999999999999999999997 888887779999999999999999998854 455799


Q ss_pred             CCCEEEccCCcccc
Q psy3330         437 RISFLDLSDNPLHC  450 (608)
Q Consensus       437 ~L~~L~L~~N~~~C  450 (608)
                      +|++|++++|++..
T Consensus       372 ~L~~L~L~~N~l~~  385 (455)
T 3v47_A          372 NLKELALDTNQLKS  385 (455)
T ss_dssp             TCCEEECCSSCCSC
T ss_pred             cccEEECCCCcccc
Confidence            99999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=6e-35  Score=296.67  Aligned_cols=260  Identities=30%  Similarity=0.435  Sum_probs=223.9

Q ss_pred             cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccccc
Q psy3330          19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQ   97 (608)
Q Consensus        19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l   97 (608)
                      ...||..|.|.  ...++|++.+++.+|..+++++++|++++|.++.++. .+.++++|++|++++|.++.+.+..|.++
T Consensus        22 ~~~cp~~c~c~--l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (330)
T 1xku_A           22 GPVCPFRCQCH--LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL   99 (330)
T ss_dssp             CCCCCTTCEEE--TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             cCCCCCCCcCC--CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence            46799999995  4589999999999999999999999999999999886 78999999999999999999988899999


Q ss_pred             ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCc--cCchhhhcCCCCccE
Q psy3330          98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY--FEDSEIFSSLKSLRI  175 (608)
Q Consensus        98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~  175 (608)
                      ++|++|++++|.++.++...+   ++|++|++++|.++.+++..|.++++|++|++++|.+..  .. +..|.++++|++
T Consensus       100 ~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~  175 (330)
T 1xku_A          100 VKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSY  175 (330)
T ss_dssp             TTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTTCCE
T ss_pred             CCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC-hhhccCCCCcCE
Confidence            999999999999998886543   789999999999999999999999999999999999974  44 677899999999


Q ss_pred             EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccC
Q psy3330         176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN  255 (608)
Q Consensus       176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  255 (608)
                      |++++|+++.++...+     ++|+.|++++|.++++.+..|.. +++|+.|++++|.++++.+..|..+++|++|++++
T Consensus       176 L~l~~n~l~~l~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  249 (330)
T 1xku_A          176 IRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  249 (330)
T ss_dssp             EECCSSCCCSCCSSCC-----TTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             EECCCCccccCCcccc-----ccCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence            9999999998876532     45888888888888877777776 78888888888888887777777888888888888


Q ss_pred             CcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhC
Q psy3330         256 NNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK  291 (608)
Q Consensus       256 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~  291 (608)
                      |+++.+|. .+..+++|+.|++++|+++++++.+|.
T Consensus       250 N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          250 NKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             SCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CcCccCCh-hhccCCCcCEEECCCCcCCccChhhcC
Confidence            88887774 577778888888888888877776654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=324.24  Aligned_cols=386  Identities=23%  Similarity=0.285  Sum_probs=278.9

Q ss_pred             ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330          53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      .+.++.++..++.+|..+.  +++++|++++|+++.+++..|.++++|++|+|++|+++.+++++|.++++|++|++++|
T Consensus         9 ~~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TTEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CcEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            4567888888999997653  57999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCC-cccccCCCCCCceEEEccCCCCcc
Q psy3330         133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP-NNVLSNLPHQSLHYLYLNENLIET  211 (608)
Q Consensus       133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~~~L~~L~L~~n~l~~  211 (608)
                      .++.+++..|.++++|++|++++|.++.++ +..|+++++|++|++++|.+..+. +..+..+  ++|++|++++|.+++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSNKIQS  163 (570)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCST-TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECTTSCCCE
T ss_pred             cCCccCHhhhcCccccccccccccccccCC-CccccccccccEEecCCCccceecChhhhccc--CCCCEEeCcCCccce
Confidence            999999999999999999999999999987 556999999999999999999854 5667888  669999999999999


Q ss_pred             ccCCCccccCCCc----cEEEccCCCCCccCccccc--------------------------------------------
Q psy3330         212 VLDNSFPFTLTNL----HTLALSSNIISFINESSFV--------------------------------------------  243 (608)
Q Consensus       212 ~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~--------------------------------------------  243 (608)
                      +.+..+.. +++|    +.+++++|.+..+.+..|.                                            
T Consensus       164 ~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  242 (570)
T 2z63_A          164 IYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  242 (570)
T ss_dssp             ECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred             ecHHHccc-hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence            88877776 7777    7888888887766554443                                            


Q ss_pred             -------------------------------------CCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccC
Q psy3330         244 -------------------------------------TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID  286 (608)
Q Consensus       244 -------------------------------------~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  286 (608)
                                                           .+++|++|++++|.++++|. .+..+ +|+.|++++|.++.++
T Consensus       243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~-~L~~L~l~~n~~~~l~  320 (570)
T 2z63_A          243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNF-GWQHLELVNCKFGQFP  320 (570)
T ss_dssp             CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB-CCSCC-CCSEEEEESCBCSSCC
T ss_pred             hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh-hhccC-CccEEeeccCcccccC
Confidence                                                 34555666666666665553 34444 6666666666665444


Q ss_pred             hhhhCCCCCCceeeccCCCCCCCC--------------CcccccC--Cchhhhccc------ccc--cccc--CCCCCce
Q psy3330         287 SVAFKSLFSLKLVKINLIPNLDSI--------------DQPLSLS--LPPLLLSLS------IPL--AFSL--TPLGTLK  340 (608)
Q Consensus       287 ~~~f~~l~~L~~L~l~~~~~l~~~--------------~~~~~~~--lp~~~~~~~------~~~--~~~~--~~~~~~~  340 (608)
                      .   ..+++|+.|+++++......              .+...+.  .|..+..++      +..  ....  ......+
T Consensus       321 ~---~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~  397 (570)
T 2z63_A          321 T---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ  397 (570)
T ss_dssp             B---CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred             c---ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCC
Confidence            3   23444455544332211000              0111100  011111110      000  0000  0011224


Q ss_pred             ecEEecCCCCCCCcCh-hhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccc-cccCcccCCCCCCCCEE
Q psy3330         341 CDRLDLSGNNFSNIDS-VAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNL-KQLPSKLFQGNTNLKSV  418 (608)
Q Consensus       341 l~~L~ls~n~l~~~~~-~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l-~~lp~~~f~~l~~L~~L  418 (608)
                      +++|++++|.+++.++ ..+.++++|+.|+++. +.+..+.+..|.++++|++|++++|+.. +.+|.. |..+++|+.|
T Consensus       398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L  475 (570)
T 2z63_A          398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFL  475 (570)
T ss_dssp             CCEEECTTSEEESCTTSCTTTTCTTCCEEECTT-SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEE
T ss_pred             CCEEEccCCccccccchhhhhcCCCCCEEeCcC-CcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEE
Confidence            5777777777777655 5677788888888877 6677777777888888888888888733 356654 7888888888


Q ss_pred             EcCCCcccccC-CCCCCCCCCCEEEccCCccccc
Q psy3330         419 SLKGNSLSHLE-ASHFPLERISFLDLSDNPLHCD  451 (608)
Q Consensus       419 ~L~~N~l~~l~-~~~~~l~~L~~L~L~~N~~~Cd  451 (608)
                      +|++|+++.++ ..+..+++|++|++++|++..-
T Consensus       476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence            88888888774 4445678888888888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=6.4e-35  Score=296.69  Aligned_cols=261  Identities=28%  Similarity=0.424  Sum_probs=216.8

Q ss_pred             ccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccc
Q psy3330          18 NKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEY   96 (608)
Q Consensus        18 ~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~   96 (608)
                      ....||..|.|.  ...++|++.+++.+|..+++++++|++++|.++.+++ .+.++++|++|++++|+++.+.+..|.+
T Consensus        23 ~~~~cp~~c~c~--l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  100 (332)
T 2ft3_A           23 YSAMCPFGCHCH--LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP  100 (332)
T ss_dssp             --CCCCSSCEEE--TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT
T ss_pred             ccCCCCCCCccc--CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC
Confidence            356799999995  4689999999999999999999999999999999865 7899999999999999999998889999


Q ss_pred             cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCc--cCchhhhcCCCCcc
Q psy3330          97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY--FEDSEIFSSLKSLR  174 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~  174 (608)
                      +++|++|++++|.++.++...+   ++|++|++++|+++.+++..|.++++|++|++++|.++.  .. +..|..+ +|+
T Consensus       101 l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l-~L~  175 (332)
T 2ft3_A          101 LRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE-PGAFDGL-KLN  175 (332)
T ss_dssp             CTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC-TTSSCSC-CCS
T ss_pred             cCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC-cccccCC-ccC
Confidence            9999999999999998886544   789999999999999988889999999999999999864  44 6677777 899


Q ss_pred             EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEecc
Q psy3330         175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS  254 (608)
Q Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  254 (608)
                      .|++++|+++.++....     ++|+.|++++|.++++.+..+.. +++|+.|++++|.++++.+..|..+++|++|+++
T Consensus       176 ~L~l~~n~l~~l~~~~~-----~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  249 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDLP-----ETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD  249 (332)
T ss_dssp             CCBCCSSBCSSCCSSSC-----SSCSCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred             EEECcCCCCCccCcccc-----CCCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence            99999999888776432     45778888888888777777776 7778888888887777777777777778888888


Q ss_pred             CCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCC
Q psy3330         255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKS  292 (608)
Q Consensus       255 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~  292 (608)
                      +|+++.+|. .+..+++|+.|++++|+++++++..|..
T Consensus       250 ~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          250 NNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             SSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             CCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccc
Confidence            777777764 4677777777777777777776665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=100.00  E-value=5.1e-35  Score=293.93  Aligned_cols=215  Identities=29%  Similarity=0.451  Sum_probs=130.3

Q ss_pred             CCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccc
Q psy3330          22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKL  100 (608)
Q Consensus        22 Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L  100 (608)
                      ||..|.|..  ..++|++.+++++|..+++++++|++++|.++.++. .+.++++|++|++++|.++.+..         
T Consensus         1 CP~~C~C~~--~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---------   69 (306)
T 2z66_A            1 CPSRCSCSG--TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC---------   69 (306)
T ss_dssp             CCTTCEEET--TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE---------
T ss_pred             CcCCCeeCC--CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC---------
Confidence            999999964  589999999999999888888777777777766664 34556666666666665554320         


Q ss_pred             cEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC
Q psy3330         101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN  180 (608)
Q Consensus       101 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  180 (608)
                                   .+..+.++++|++|++++|.++.++ ..+.++++|++|++++|.+........+..+++|++|++++
T Consensus        70 -------------~~~~~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  135 (306)
T 2z66_A           70 -------------CSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  135 (306)
T ss_dssp             -------------EEHHHHSCSCCCEEECCSCSEEEEE-EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred             -------------cccccccccccCEEECCCCccccCh-hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC
Confidence                         0122333444444444444444332 22444445555555555444443113344444555555544


Q ss_pred             CCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCc-cCcccccCCCccCEEeccCCcCC
Q psy3330         181 NQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF-INESSFVTLRTLHSLDLSNNNLS  259 (608)
Q Consensus       181 n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~  259 (608)
                      |.+..+.+                          ..+.. +++|++|++++|.+.+ ..+..+..+++|++|++++|+++
T Consensus       136 n~l~~~~~--------------------------~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  188 (306)
T 2z66_A          136 THTRVAFN--------------------------GIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  188 (306)
T ss_dssp             SCCEECST--------------------------TTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CcCCccch--------------------------hhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence            44433332                          22332 4455555555555544 33456667778888888888888


Q ss_pred             CCChhhhhCCCCCCEEeccCCCCCccChh
Q psy3330         260 AIPTKQLSKLSALVNLDLSGNNFSNIDSV  288 (608)
Q Consensus       260 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  288 (608)
                      ++++..+..+++|+.|++++|+++++++.
T Consensus       189 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  217 (306)
T 2z66_A          189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTF  217 (306)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred             CcCHHHhcCCCCCCEEECCCCccCccChh
Confidence            87777788888888888888887765543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.2e-34  Score=319.09  Aligned_cols=389  Identities=22%  Similarity=0.262  Sum_probs=286.7

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK  133 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  133 (608)
                      ++.+-++-.++.+|..+.  +++++|||++|+|+.+++.+|.++++|++|+|++|+|+.+++++|.++++|++|+|++|+
T Consensus        34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            345677778899997653  579999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCC-cccccCCCCCCceEEEccCCCCccc
Q psy3330         134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP-NNVLSNLPHQSLHYLYLNENLIETV  212 (608)
Q Consensus       134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~~~L~~L~L~~n~l~~~  212 (608)
                      ++.+++..|.++++|++|++++|++++++ +..|+++++|++|++++|.+..++ +..+..+  ++|++|++++|.++++
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECCSSCCCEE
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccc--hhhhhhcccCcccccc
Confidence            99999999999999999999999999987 778999999999999999998765 4556677  5699999999999998


Q ss_pred             cCCCccccCCC----ccEEEccCCCCCccCcccccCC-------------------------------------------
Q psy3330         213 LDNSFPFTLTN----LHTLALSSNIISFINESSFVTL-------------------------------------------  245 (608)
Q Consensus       213 ~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~l-------------------------------------------  245 (608)
                      .+..+.. +.+    ...++++.|.+..+.+..+...                                           
T Consensus       189 ~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  267 (635)
T 4g8a_A          189 YCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  267 (635)
T ss_dssp             CGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             ccccccc-hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence            8777654 333    3356677776655443322211                                           


Q ss_pred             --------------------------------------CccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccCh
Q psy3330         246 --------------------------------------RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS  287 (608)
Q Consensus       246 --------------------------------------~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  287 (608)
                                                            .+++.+.+.++.+..+.  .+.....++.|++.+|.+..+..
T Consensus       268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~  345 (635)
T 4g8a_A          268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT  345 (635)
T ss_dssp             SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC
T ss_pred             ccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc
Confidence                                                  12222333333332222  24455677888888877665543


Q ss_pred             hhh-------------------CCCCCCceeeccCCCCC---------------CCCCccc--ccCCchhhhccc-----
Q psy3330         288 VAF-------------------KSLFSLKLVKINLIPNL---------------DSIDQPL--SLSLPPLLLSLS-----  326 (608)
Q Consensus       288 ~~f-------------------~~l~~L~~L~l~~~~~l---------------~~~~~~~--~~~lp~~~~~~~-----  326 (608)
                      ..+                   ..+++|+.++++.+...               ...+...  ....+.......     
T Consensus       346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l  425 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHL  425 (635)
T ss_dssp             CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEE
T ss_pred             ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccch
Confidence            222                   24556666666543210               0000000  000000000000     


Q ss_pred             -c--ccccc----cCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCc
Q psy3330         327 -I--PLAFS----LTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM  399 (608)
Q Consensus       327 -~--~~~~~----~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~  399 (608)
                       .  .....    ........++.++++.|.+.++.+..+..+++|+.++++.+.....+.+..|..+++|++|+|++|+
T Consensus       426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~  505 (635)
T 4g8a_A          426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  505 (635)
T ss_dssp             ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence             0  00000    0111223568899999999999999999999999999988555667778889999999999999997


Q ss_pred             cccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccc
Q psy3330         400 NLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCD  451 (608)
Q Consensus       400 ~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~Cd  451 (608)
                       +..+++..|.++++|++|+|++|+|+.+++..+ .+++|++|+|++|++..-
T Consensus       506 -L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  557 (635)
T 4g8a_A          506 -LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  557 (635)
T ss_dssp             -CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred             -cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence             888887789999999999999999999987755 689999999999999763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2e-33  Score=299.26  Aligned_cols=328  Identities=27%  Similarity=0.353  Sum_probs=279.1

Q ss_pred             ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330          71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL  150 (608)
Q Consensus        71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  150 (608)
                      ..+++++.|+++++.++.++.  +..+++|++|++++|.++.+++  +.++++|++|++++|.++.+++  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            346789999999999998874  7889999999999999999876  9999999999999999998866  999999999


Q ss_pred             EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330         151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS  230 (608)
Q Consensus       151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  230 (608)
                      |++++|.+..++ +  +..+++|++|++++|.+..++.  +..+  ++|+.|+++ |.+.+..+  +.. +++|+.|+++
T Consensus       117 L~L~~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~-~~~~~~~~--~~~-l~~L~~L~l~  185 (466)
T 1o6v_A          117 LTLFNNQITDID-P--LKNLTNLNRLELSSNTISDISA--LSGL--TSLQQLSFG-NQVTDLKP--LAN-LTTLERLDIS  185 (466)
T ss_dssp             EECCSSCCCCCG-G--GTTCTTCSEEEEEEEEECCCGG--GTTC--TTCSEEEEE-ESCCCCGG--GTT-CTTCCEEECC
T ss_pred             EECCCCCCCCCh-H--HcCCCCCCEEECCCCccCCChh--hccC--CcccEeecC-CcccCchh--hcc-CCCCCEEECc
Confidence            999999999875 3  8999999999999999988764  6777  569999997 55555543  665 9999999999


Q ss_pred             CCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCC
Q psy3330         231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI  310 (608)
Q Consensus       231 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~  310 (608)
                      +|.++.+.  .+..+++|++|++++|+++++++  +..+++|+.|++++|.++++.  .+..+++|+.|+++++.     
T Consensus       186 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~-----  254 (466)
T 1o6v_A          186 SNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQ-----  254 (466)
T ss_dssp             SSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSC-----
T ss_pred             CCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCc-----
Confidence            99998863  48889999999999999999875  788999999999999999873  58889999999997543     


Q ss_pred             CcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCccc
Q psy3330         311 DQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQL  390 (608)
Q Consensus       311 ~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L  390 (608)
                         ..+. ++ +.             ...++++|++++|.++++++  +..+++|+.|+++. +.++.+.+  +..+++|
T Consensus       255 ---l~~~-~~-~~-------------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          255 ---ISNL-AP-LS-------------GLTKLTELKLGANQISNISP--LAGLTALTNLELNE-NQLEDISP--ISNLKNL  311 (466)
T ss_dssp             ---CCCC-GG-GT-------------TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS-SCCSCCGG--GGGCTTC
T ss_pred             ---cccc-hh-hh-------------cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCC-CcccCchh--hcCCCCC
Confidence               1111 11 10             12256899999999999876  88999999999998 77877655  7889999


Q ss_pred             ceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccC
Q psy3330         391 ETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCN  453 (608)
Q Consensus       391 ~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~  453 (608)
                      +.|++++|+ +..++.  +..+++|+.|++++|+++.++ .+..+++|+.|++++|++....+
T Consensus       312 ~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          312 TYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             SEEECCSSC-CSCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CEEECcCCc-CCCchh--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch
Confidence            999999998 666665  678999999999999999884 56678999999999999987544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.1e-33  Score=296.97  Aligned_cols=332  Identities=20%  Similarity=0.187  Sum_probs=253.1

Q ss_pred             CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330          50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL  129 (608)
Q Consensus        50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  129 (608)
                      .+++++|++++|.++.+| .+..+++|++|++++|++++++   ++.+++|++|++++|.+++++   +.++++|++|++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L  113 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNC  113 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEEC
Confidence            478999999999999986 6899999999999999999985   788999999999999999984   889999999999


Q ss_pred             cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCC-CCCCCcccccCCCCCCceEEEccCCC
Q psy3330         130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ-ILDVPNNVLSNLPHQSLHYLYLNENL  208 (608)
Q Consensus       130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~  208 (608)
                      ++|++++++   +..+++|++|++++|.+++++    ++.+++|++|++++|+ +..+   .+..+  ++|+.|++++|.
T Consensus       114 ~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~~l--~~L~~L~ls~n~  181 (457)
T 3bz5_A          114 DTNKLTKLD---VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL---DVTPQ--TQLTTLDCSFNK  181 (457)
T ss_dssp             CSSCCSCCC---CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC---CCTTC--TTCCEEECCSSC
T ss_pred             CCCcCCeec---CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc---ccccC--CcCCEEECCCCc
Confidence            999999873   889999999999999999873    7889999999999994 4444   25566  669999999999


Q ss_pred             CccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChh
Q psy3330         209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV  288 (608)
Q Consensus       209 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  288 (608)
                      +++++   +.. +++|+.|++++|.++++   .+..+++|++|++++|+++++|   +..+++|+.|++++|++++++. 
T Consensus       182 l~~l~---l~~-l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~-  250 (457)
T 3bz5_A          182 ITELD---VSQ-NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDV-  250 (457)
T ss_dssp             CCCCC---CTT-CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCC-
T ss_pred             cceec---ccc-CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCH-
Confidence            99974   555 89999999999999987   3788999999999999999987   7889999999999999999874 


Q ss_pred             hhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccc
Q psy3330         289 AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLV  368 (608)
Q Consensus       289 ~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l  368 (608)
                        ..+++|+.|+++.+.                                   ++.|++++|.+.+..+  +..+++|+.|
T Consensus       251 --~~l~~L~~L~l~~n~-----------------------------------L~~L~l~~n~~~~~~~--~~~l~~L~~L  291 (457)
T 3bz5_A          251 --STLSKLTTLHCIQTD-----------------------------------LLEIDLTHNTQLIYFQ--AEGCRKIKEL  291 (457)
T ss_dssp             --TTCTTCCEEECTTCC-----------------------------------CSCCCCTTCTTCCEEE--CTTCTTCCCC
T ss_pred             --HHCCCCCEEeccCCC-----------------------------------CCEEECCCCccCCccc--ccccccCCEE
Confidence              456777777774321                                   1333444443332221  2333344444


Q ss_pred             ccccCCCCCcC-------ChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC--------
Q psy3330         369 KINLIPNLDSI-------DQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF--------  433 (608)
Q Consensus       369 ~l~~~~~l~~~-------~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~--------  433 (608)
                      +++.+..+..+       ..-.+.++++|++|++++|+ ++.++   ++++++|+.|++++|+|+.++.-..        
T Consensus       292 ~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~---l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l  367 (457)
T 3bz5_A          292 DVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD---VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNF  367 (457)
T ss_dssp             CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC---CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSE
T ss_pred             ECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc---cccCCcCcEEECCCCCCCCccccccccccCCcE
Confidence            44332211111       11125567899999999997 66674   7889999999999999987642100        


Q ss_pred             ----CCCCCCEEEccCCccccccCC
Q psy3330         434 ----PLERISFLDLSDNPLHCDCNL  454 (608)
Q Consensus       434 ----~l~~L~~L~L~~N~~~CdC~~  454 (608)
                          .+..+..+++++|.+++..|.
T Consensus       368 ~g~~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          368 EAEGQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             EEEEEEEECCCBCCBTTBEEEECCT
T ss_pred             EecceeeecCccccccCcEEEEcCh
Confidence                012345556666666665543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.4e-33  Score=285.02  Aligned_cols=303  Identities=26%  Similarity=0.385  Sum_probs=190.4

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      +++++|+++++.+..++. +..+++|++|++++|.++++++  |..+++|++|++++|.++.++  +|.++++|++|+++
T Consensus        44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN  118 (347)
T ss_dssp             TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred             ccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence            466777777777666653 5666777777777777766655  666677777777777766653  46667777777777


Q ss_pred             CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330         131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~  210 (608)
                      +|.++.+++  +..+++|++|++++|......  ..+..+++|++|++++|.+..+++  +..+  ++|+.|++++|.++
T Consensus       119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~--~~~l--~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          119 EDNISDISP--LANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTP--IANL--TDLYSLSLNYNQIE  190 (347)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGC--TTCSEEECTTSCCC
T ss_pred             CCcccCchh--hccCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCchh--hccC--CCCCEEEccCCccc
Confidence            777666543  666677777777766443332  236666677777777766665554  4444  44666666666666


Q ss_pred             cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330         211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF  290 (608)
Q Consensus       211 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f  290 (608)
                      ++.+  +.. +++|+.+++++|.+..+.+  +..+++|++|++++|+++++++  +..+++|+.|++++|.++++  ..+
T Consensus       191 ~~~~--~~~-l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~  261 (347)
T 4fmz_A          191 DISP--LAS-LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV  261 (347)
T ss_dssp             CCGG--GGG-CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             cccc--ccC-CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence            5543  443 6666666666666665533  5566666666666666666654  56666666666666666654  234


Q ss_pred             CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccc
Q psy3330         291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI  370 (608)
Q Consensus       291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l  370 (608)
                      ..+++|+.                                             |++++|++++++               
T Consensus       262 ~~l~~L~~---------------------------------------------L~l~~n~l~~~~---------------  281 (347)
T 4fmz_A          262 KDLTKLKM---------------------------------------------LNVGSNQISDIS---------------  281 (347)
T ss_dssp             TTCTTCCE---------------------------------------------EECCSSCCCCCG---------------
T ss_pred             hcCCCcCE---------------------------------------------EEccCCccCCCh---------------
Confidence            44444443                                             444555555431               


Q ss_pred             ccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccc
Q psy3330         371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLH  449 (608)
Q Consensus       371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~  449 (608)
                                  .|..+++|++|++++|+ ++.++...|.++++|+.|++++|.++.+++ +..+++|++|++++|++.
T Consensus       282 ------------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          282 ------------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ------------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             ------------hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence                        24456777777777776 555555557777788888888887777766 556777888888887763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.5e-33  Score=284.35  Aligned_cols=289  Identities=25%  Similarity=0.348  Sum_probs=227.9

Q ss_pred             cccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc
Q psy3330          70 LSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE  149 (608)
Q Consensus        70 ~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  149 (608)
                      +..+++|++|+++++.+..++.  +..+++|++|++++|.++.+++  |.++++|++|++++|.++.+  ..|.++++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            4578889999999999988763  7889999999999999998875  88999999999999998887  3588899999


Q ss_pred             EEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEc
Q psy3330         150 LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLAL  229 (608)
Q Consensus       150 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  229 (608)
                      +|++++|.+..+. +  +..+++|++|++++|......+. +..+  ++|+.|++++|.+.+..+  +.. +++|+.|++
T Consensus       114 ~L~l~~n~i~~~~-~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l--~~L~~L~l~~~~~~~~~~--~~~-l~~L~~L~l  184 (347)
T 4fmz_A          114 ELYLNEDNISDIS-P--LANLTKMYSLNLGANHNLSDLSP-LSNM--TGLNYLTVTESKVKDVTP--IAN-LTDLYSLSL  184 (347)
T ss_dssp             EEECTTSCCCCCG-G--GTTCTTCCEEECTTCTTCCCCGG-GTTC--TTCCEEECCSSCCCCCGG--GGG-CTTCSEEEC
T ss_pred             EEECcCCcccCch-h--hccCCceeEEECCCCCCcccccc-hhhC--CCCcEEEecCCCcCCchh--hcc-CCCCCEEEc
Confidence            9999999998875 3  88899999999999854443332 5566  558888888888877654  554 788888888


Q ss_pred             cCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCC
Q psy3330         230 SSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS  309 (608)
Q Consensus       230 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~  309 (608)
                      ++|.+..+.+  +..+++|+.|++++|.++++++  +..+++|+.|++++|.++++++  +..+++|+.|++        
T Consensus       185 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l--------  250 (347)
T 4fmz_A          185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI--------  250 (347)
T ss_dssp             TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC--------
T ss_pred             cCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC--------
Confidence            8888877644  6778888888888888887764  7778888888888888877655  556666554444        


Q ss_pred             CCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcc
Q psy3330         310 IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQ  389 (608)
Q Consensus       310 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~  389 (608)
                                                           ++|.++++                           ..+..+++
T Consensus       251 -------------------------------------~~n~l~~~---------------------------~~~~~l~~  266 (347)
T 4fmz_A          251 -------------------------------------GTNQISDI---------------------------NAVKDLTK  266 (347)
T ss_dssp             -------------------------------------CSSCCCCC---------------------------GGGTTCTT
T ss_pred             -------------------------------------CCCccCCC---------------------------hhHhcCCC
Confidence                                                 55555443                           23456789


Q ss_pred             cceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCC-CCCCCCCCEEEccCCccccccCC
Q psy3330         390 LETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS-HFPLERISFLDLSDNPLHCDCNL  454 (608)
Q Consensus       390 L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~L~~N~~~CdC~~  454 (608)
                      |++|++++|+ ++.++.  |..+++|+.|++++|+++.+++. +..+++|++|++++|++....++
T Consensus       267 L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  329 (347)
T 4fmz_A          267 LKMLNVGSNQ-ISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL  329 (347)
T ss_dssp             CCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGG
T ss_pred             cCEEEccCCc-cCCChh--hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccCh
Confidence            9999999997 888853  88899999999999999976654 44789999999999999886653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=301.04  Aligned_cols=267  Identities=24%  Similarity=0.314  Sum_probs=239.6

Q ss_pred             CceEEEecCCCCccccCc-c--CccccEEEeccCCCccc-ccccccCCCccEEEeeCCCCcccCcccccccccccEEEcc
Q psy3330          31 QKLEASCTDAGLEVVPIQ-L--NPEVQTIILRENRISNV-HYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS  106 (608)
Q Consensus        31 ~~~~v~C~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~l-~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls  106 (608)
                      ....++.++..++.++.. +  .+++++|+|++|.++.+ |..|.++++|++|+|++|.++.+++..|.++++|++|+|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            456788888889888643 3  36899999999999987 5689999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330         107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV  186 (608)
Q Consensus       107 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  186 (608)
                      +|.++.+.+..|.++++|++|++++|.++.+.+..|.++++|++|++++|.++.++ +..|.++++|+.|++++|.+..+
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEe
Confidence            99999999899999999999999999999999999999999999999999999987 78899999999999999999999


Q ss_pred             CcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhh
Q psy3330         187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL  266 (608)
Q Consensus       187 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  266 (608)
                      ++..+..+  ++|+.|++++|...+..+..... ..+|+.|++++|.++.+++..|..+++|+.|+|++|.++++++..|
T Consensus       192 ~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          192 RDYSFKRL--YRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             CTTCSCSC--TTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred             ChhhcccC--cccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence            99888888  56999999998776655544444 5699999999999999988889999999999999999999998899


Q ss_pred             hCCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330         267 SKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI  301 (608)
Q Consensus       267 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l  301 (608)
                      .++++|+.|+|++|+++++.+.+|..+++|+.|++
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  303 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV  303 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred             cccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence            99999999999999999988877776666654444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.7e-33  Score=287.92  Aligned_cols=330  Identities=22%  Similarity=0.285  Sum_probs=274.6

Q ss_pred             CceEEEecCCCCccccCcc---CccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEcc
Q psy3330          31 QKLEASCTDAGLEVVPIQL---NPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS  106 (608)
Q Consensus        31 ~~~~v~C~~~~l~~ip~~~---~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls  106 (608)
                      ..+.++.++..++.+|...   .+++++|++++|.++.++. .+..+++|++|++++|.++.+++..|.++++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            3456778888888898764   3789999999999999875 89999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330         107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV  186 (608)
Q Consensus       107 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  186 (608)
                      +|.++.+++..|.++++|++|++++|.++.+++..|.++++|++|++++|.++...    +..+++|+.|++++|.+..+
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEE
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeeccccccccc
Confidence            99999999888999999999999999999999999999999999999999999875    56779999999999998865


Q ss_pred             CcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhh
Q psy3330         187 PNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQL  266 (608)
Q Consensus       187 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  266 (608)
                      +.     .  .+++.|++++|.++.++...    .++|+.|++++|.+++.  ..+..+++|++|++++|.++++++..+
T Consensus       202 ~~-----~--~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          202 AI-----P--IAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             EC-----C--SSCSEEECCSSCCCEEECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             CC-----C--CcceEEECCCCeeeeccccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            43     2  56999999999999886543    46899999999999876  578899999999999999999988899


Q ss_pred             hCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEec
Q psy3330         267 SKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDL  346 (608)
Q Consensus       267 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~l  346 (608)
                      ..+++|+.|++++|++++++.. +..+++|+                                             +|++
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~---------------------------------------------~L~L  302 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLVALNLY-GQPIPTLK---------------------------------------------VLDL  302 (390)
T ss_dssp             TTCSSCCEEECCSSCCCEEECS-SSCCTTCC---------------------------------------------EEEC
T ss_pred             cccccCCEEECCCCcCcccCcc-cCCCCCCC---------------------------------------------EEEC
Confidence            9999999999999999987543 34455554                                             5566


Q ss_pred             CCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCccc
Q psy3330         347 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLS  426 (608)
Q Consensus       347 s~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~  426 (608)
                      ++|+++++++.                          +..+++|++|++++|+ +..++   +..+++|+.|++++|.++
T Consensus       303 ~~n~l~~~~~~--------------------------~~~l~~L~~L~L~~N~-i~~~~---~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          303 SHNHLLHVERN--------------------------QPQFDRLENLYLDHNS-IVTLK---LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             CSSCCCCCGGG--------------------------HHHHTTCSEEECCSSC-CCCCC---CCTTCCCSEEECCSSCEE
T ss_pred             CCCcceecCcc--------------------------ccccCcCCEEECCCCc-cceeC---chhhccCCEEEcCCCCcc
Confidence            77777765432                          2335788899999997 77776   567899999999999998


Q ss_pred             ccCCCCCCCCCCCEEEccCCccccccCC
Q psy3330         427 HLEASHFPLERISFLDLSDNPLHCDCNL  454 (608)
Q Consensus       427 ~l~~~~~~l~~L~~L~L~~N~~~CdC~~  454 (608)
                      .-.... -+..+....+.+++..|.++.
T Consensus       353 ~~~~~~-~~~~~~~~~~~~~~~~c~~~~  379 (390)
T 3o6n_A          353 CNSLRA-LFRNVARPAVDDADQHCKIDY  379 (390)
T ss_dssp             HHHHHH-HTTTCCTTTBCCCCSCCCTTC
T ss_pred             chhHHH-HHHHHHhhcccccCceecccc
Confidence            321110 022333445678888898764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.6e-32  Score=284.79  Aligned_cols=343  Identities=20%  Similarity=0.283  Sum_probs=233.2

Q ss_pred             ceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC
Q psy3330          32 KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS  111 (608)
Q Consensus        32 ~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~  111 (608)
                      ...+++++.+++.+|. +++++++|++++|.++++|..   .++|++|++++|++++++..    .++|++|++++|+++
T Consensus        73 l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           73 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCS
T ss_pred             CCEEEecCCccccCCC-CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCC
Confidence            4689999999999987 678999999999999998864   47899999999999887652    268999999999999


Q ss_pred             CCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccc
Q psy3330         112 ALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVL  191 (608)
Q Consensus       112 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  191 (608)
                      +++  .|.++++|++|++++|++++++..    ..+|++|++++|.+++++   .+.++++|++|++++|++++++..  
T Consensus       145 ~lp--~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~---~~~~l~~L~~L~l~~N~l~~l~~~--  213 (454)
T 1jl5_A          145 KLP--ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKKLPDL--  213 (454)
T ss_dssp             SCC--CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSCCCC--
T ss_pred             CCc--ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc---cccCCCCCCEEECCCCcCCcCCCC--
Confidence            987  499999999999999999986532    358999999999999863   489999999999999999887653  


Q ss_pred             cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCC
Q psy3330         192 SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA  271 (608)
Q Consensus       192 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~  271 (608)
                         + .+|+.|++++|.++.++  .+.. +++|+.|++++|++++++.    .+++|++|++++|+++++|..    .++
T Consensus       214 ---~-~~L~~L~l~~n~l~~lp--~~~~-l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----~~~  278 (454)
T 1jl5_A          214 ---P-LSLESIVAGNNILEELP--ELQN-LPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----PQS  278 (454)
T ss_dssp             ---C-TTCCEEECCSSCCSSCC--CCTT-CTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----CTT
T ss_pred             ---c-CcccEEECcCCcCCccc--ccCC-CCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----cCc
Confidence               1 46999999999999765  3665 8999999999999988643    247899999999999998742    478


Q ss_pred             CCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCC
Q psy3330         272 LVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNF  351 (608)
Q Consensus       272 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l  351 (608)
                      |+.|++++|++++++..    .++|+.|+++++.        +.+ ++.               . ..++++|++++|++
T Consensus       279 L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~--------l~~-i~~---------------~-~~~L~~L~Ls~N~l  329 (454)
T 1jl5_A          279 LTFLDVSENIFSGLSEL----PPNLYYLNASSNE--------IRS-LCD---------------L-PPSLEELNVSNNKL  329 (454)
T ss_dssp             CCEEECCSSCCSEESCC----CTTCCEEECCSSC--------CSE-ECC---------------C-CTTCCEEECCSSCC
T ss_pred             CCEEECcCCccCcccCc----CCcCCEEECcCCc--------CCc-ccC---------------C-cCcCCEEECCCCcc
Confidence            99999999999986531    2678888886432        111 110               0 01457888888888


Q ss_pred             CCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCcccc--ccCcccCCCC-------------CCCC
Q psy3330         352 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK--QLPSKLFQGN-------------TNLK  416 (608)
Q Consensus       352 ~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~--~lp~~~f~~l-------------~~L~  416 (608)
                      ++++..    +++|+.|+++. +.++.++.    .+++|++|++++|+..+  .+|.. +..+             ++|+
T Consensus       330 ~~lp~~----~~~L~~L~L~~-N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~-l~~L~~n~~~~~i~~~~~~L~  399 (454)
T 1jl5_A          330 IELPAL----PPRLERLIASF-NHLAEVPE----LPQNLKQLHVEYNPLREFPDIPES-VEDLRMNSHLAEVPELPQNLK  399 (454)
T ss_dssp             SCCCCC----CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTT-CCEEECCC-------------
T ss_pred             cccccc----CCcCCEEECCC-Cccccccc----hhhhccEEECCCCCCCcCCCChHH-HHhhhhcccccccccccCcCC
Confidence            876542    45666666665 55555544    24666666666666333  34433 3333             4555


Q ss_pred             EEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330         417 SVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       417 ~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                      .|++++|.++.+|.-   -.+++.|.+++|.+.|
T Consensus       400 ~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          400 QLHVETNPLREFPDI---PESVEDLRMNSERVVD  430 (454)
T ss_dssp             ----------------------------------
T ss_pred             EEECCCCcCCccccc---hhhHhheeCcCcccCC
Confidence            555555555532210   0234444555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=100.00  E-value=5.8e-33  Score=275.90  Aligned_cols=235  Identities=30%  Similarity=0.452  Sum_probs=176.2

Q ss_pred             CCCCCceecCCc-eEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330          21 ICPSRCQCFDQK-LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        21 ~Cp~~C~c~~~~-~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      +||..|.|.... ..++|++.+++.+|..+++++++|++++|.++.++. .+..+++|++|++++|.++.+.+..|.+++
T Consensus         1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   80 (285)
T 1ozn_A            1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (285)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence            599999998644 789999999999999999999999999999998874 688899999999999999988888888889


Q ss_pred             cccEEEccCCC-CCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330          99 KLLNLNISYNE-ISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK  177 (608)
Q Consensus        99 ~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  177 (608)
                      +|++|++++|. ++.+++..|.++++|++|++++|.++.+.+..|.++++|++|++++|.++.+. +..|..+++|++|+
T Consensus        81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLF  159 (285)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred             CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-HhHhccCCCccEEE
Confidence            99999999887 88887778888888888888888888887778888888888888888888776 56677777777777


Q ss_pred             ccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCc
Q psy3330         178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN  257 (608)
Q Consensus       178 L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  257 (608)
                      +++|+++.+++..+..+  ++|+.|++++|.+++..+..|.. +++|+.|++++|.++++.+..+..+++|+.|++++|.
T Consensus       160 l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGL--HSLDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCSSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCCCcccccCHHHhcCc--cccCEEECCCCcccccCHhHccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            77777776666555554  33555555555555554444443 4455555555554444444444444444444444444


Q ss_pred             CC
Q psy3330         258 LS  259 (608)
Q Consensus       258 l~  259 (608)
                      +.
T Consensus       237 ~~  238 (285)
T 1ozn_A          237 WV  238 (285)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-31  Score=283.82  Aligned_cols=311  Identities=21%  Similarity=0.197  Sum_probs=249.0

Q ss_pred             cccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCC
Q psy3330          68 YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLH  147 (608)
Q Consensus        68 ~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  147 (608)
                      .+++++++|++|++++|.+++++  .|..+++|++|++++|++++++   +..+++|++|++++|.+++++   ++++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCc
Confidence            46788999999999999999985  5899999999999999999985   889999999999999999873   889999


Q ss_pred             CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEE
Q psy3330         148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL  227 (608)
Q Consensus       148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  227 (608)
                      |++|++++|.+++++    ++.+++|++|++++|++++++   +..+  ++|+.|++++|...+..  .+.. +++|+.|
T Consensus       108 L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~---l~~l--~~L~~L~l~~n~~~~~~--~~~~-l~~L~~L  175 (457)
T 3bz5_A          108 LTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID---VSHN--TQLTELDCHLNKKITKL--DVTP-QTQLTTL  175 (457)
T ss_dssp             CCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC---CTTC--TTCCEEECTTCSCCCCC--CCTT-CTTCCEE
T ss_pred             CCEEECCCCcCCeec----CCCCCcCCEEECCCCccceec---cccC--CcCCEEECCCCCccccc--cccc-CCcCCEE
Confidence            999999999999863    889999999999999999874   5566  56999999999544333  3555 8999999


Q ss_pred             EccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCC
Q psy3330         228 ALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL  307 (608)
Q Consensus       228 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l  307 (608)
                      ++++|.+++++   +..+++|+.|++++|++++++   +..+++|+.|++++|++++++   +..+++|+.|+++++.  
T Consensus       176 ~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~--  244 (457)
T 3bz5_A          176 DCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNP--  244 (457)
T ss_dssp             ECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC--
T ss_pred             ECCCCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCc--
Confidence            99999999874   788899999999999999984   788999999999999999975   7778888877775321  


Q ss_pred             CCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCC
Q psy3330         308 DSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN  387 (608)
Q Consensus       308 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l  387 (608)
                            +.+ +|.               ....+++.|++++|++              +.++++.+..+..++   +.++
T Consensus       245 ------l~~-~~~---------------~~l~~L~~L~l~~n~L--------------~~L~l~~n~~~~~~~---~~~l  285 (457)
T 3bz5_A          245 ------LTE-LDV---------------STLSKLTTLHCIQTDL--------------LEIDLTHNTQLIYFQ---AEGC  285 (457)
T ss_dssp             ------CSC-CCC---------------TTCTTCCEEECTTCCC--------------SCCCCTTCTTCCEEE---CTTC
T ss_pred             ------CCC-cCH---------------HHCCCCCEEeccCCCC--------------CEEECCCCccCCccc---cccc
Confidence                  111 010               0011235566655543              444555433333332   4678


Q ss_pred             cccceeecccCccccccCcc-------cCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330         388 IQLETVIINENMNLKQLPSK-------LFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       388 ~~L~~L~Ls~N~~l~~lp~~-------~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                      ++|+.|++++|..++.+|..       .++++++|+.|++++|+|+.++  +..+++|+.|++++|++..
T Consensus       286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCB
T ss_pred             ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCC
Confidence            99999999999877777642       2667899999999999999985  6678999999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=100.00  E-value=4.5e-32  Score=269.48  Aligned_cols=268  Identities=24%  Similarity=0.373  Sum_probs=172.1

Q ss_pred             cEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEE
Q psy3330         149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLA  228 (608)
Q Consensus       149 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  228 (608)
                      +.++.+++.++.++  ..  -.++|++|++++|+++.+++..+..+  ++|++|++++|.++++.+..|.. +++|++|+
T Consensus        14 ~~~~c~~~~l~~ip--~~--~~~~l~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~   86 (285)
T 1ozn_A           14 VTTSCPQQGLQAVP--VG--IPAASQRIFLHGNRISHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTG-LALLEQLD   86 (285)
T ss_dssp             CEEECCSSCCSSCC--TT--CCTTCSEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTT-CTTCCEEE
T ss_pred             eEEEcCcCCcccCC--cC--CCCCceEEEeeCCcCCccCHHHcccC--CCCCEEECCCCccceeCHhhcCC-ccCCCEEe
Confidence            34555555555543  11  12455555555555555554444444  33555555555555554444444 55555555


Q ss_pred             ccCCC-CCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCC
Q psy3330         229 LSSNI-ISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL  307 (608)
Q Consensus       229 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l  307 (608)
                      +++|. +..+.+..|.++++|++|++++|+++++++..+.++++|++|++++|+++++++..|..++             
T Consensus        87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------  153 (285)
T 1ozn_A           87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-------------  153 (285)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------
T ss_pred             CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-------------
Confidence            55554 4444444455555555555555555555444455555555555555555544444444444             


Q ss_pred             CCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCC
Q psy3330         308 DSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN  387 (608)
Q Consensus       308 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l  387 (608)
                                                                              +|+.|+++. +.++.++...|.++
T Consensus       154 --------------------------------------------------------~L~~L~l~~-n~l~~~~~~~~~~l  176 (285)
T 1ozn_A          154 --------------------------------------------------------NLTHLFLHG-NRISSVPERAFRGL  176 (285)
T ss_dssp             --------------------------------------------------------TCCEEECCS-SCCCEECTTTTTTC
T ss_pred             --------------------------------------------------------CccEEECCC-CcccccCHHHhcCc
Confidence                                                                    444444443 44445555567778


Q ss_pred             cccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCC-CCCCCCCCEEEccCCccccccCChHHHHHHHhhhc
Q psy3330         388 IQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS-HFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVK  466 (608)
Q Consensus       388 ~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~  466 (608)
                      ++|++|++++|+ +..++...|..+++|+.|++++|+++.+++. +..+++|+.|++++|||.|+|++.|+..|++..  
T Consensus       177 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~--  253 (285)
T 1ozn_A          177 HSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF--  253 (285)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC--
T ss_pred             cccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhc--
Confidence            999999999998 7777666699999999999999999998866 457899999999999999999999999998732  


Q ss_pred             cccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccc-c
Q psy3330         467 STMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVH-C  535 (608)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~-C  535 (608)
                                                             ........|..|+.++|+.+.+++..++. |
T Consensus       254 ---------------------------------------~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          254 ---------------------------------------RGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             ---------------------------------------CSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             ---------------------------------------ccccCccccCCchHhCCcChhhcCHHHhccC
Confidence                                                   12235778999999999999999887774 5

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1e-31  Score=273.05  Aligned_cols=310  Identities=21%  Similarity=0.272  Sum_probs=187.8

Q ss_pred             EecCCCCccccCccC--------ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccC
Q psy3330          36 SCTDAGLEVVPIQLN--------PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISY  107 (608)
Q Consensus        36 ~C~~~~l~~ip~~~~--------~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~  107 (608)
                      .+....++++|..+.        .+++.++++++.++.+|..+.  ++|+.|++++|.++.+++..|.++++|++|++++
T Consensus        10 ~~~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~   87 (332)
T 2ft3_A           10 TSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN   87 (332)
T ss_dssp             ---------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccCCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC
Confidence            445555666665431        257778888877777776543  5777788887777777777777777788888877


Q ss_pred             CCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC--
Q psy3330         108 NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD--  185 (608)
Q Consensus       108 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--  185 (608)
                      |.++.+.+.+|.++++|++|++++|.++.++...+   ++|++|++++|.+..++ +..|.++++|++|++++|.++.  
T Consensus        88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~  163 (332)
T 2ft3_A           88 NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPLENSG  163 (332)
T ss_dssp             SCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCCCBGGG
T ss_pred             CccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCccccCC
Confidence            77777777777777777777777777776655433   57777777777777765 5667777777777777777753  


Q ss_pred             CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330         186 VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ  265 (608)
Q Consensus       186 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  265 (608)
                      +.+..+..+   +|+.|++++|.+++++...    .++|+.|++++|.++++.+..|.++++|++|++++|+++++++..
T Consensus       164 ~~~~~~~~l---~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  236 (332)
T 2ft3_A          164 FEPGAFDGL---KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS  236 (332)
T ss_dssp             SCTTSSCSC---CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred             CCcccccCC---ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence            444444443   3666777777666654332    245666666666666666666666666666666666666666656


Q ss_pred             hhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEe
Q psy3330         266 LSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLD  345 (608)
Q Consensus       266 ~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~  345 (608)
                      +..+++|+.|++++|+++.++.. +..+++|+                                             +|+
T Consensus       237 ~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~---------------------------------------------~L~  270 (332)
T 2ft3_A          237 LSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQ---------------------------------------------VVY  270 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTT-GGGCTTCC---------------------------------------------EEE
T ss_pred             hhCCCCCCEEECCCCcCeecChh-hhcCccCC---------------------------------------------EEE
Confidence            66666666666666666654432 44444443                                             344


Q ss_pred             cCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCcccc--ccCcccCCCCCCCCEEEcCCC
Q psy3330         346 LSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLK--QLPSKLFQGNTNLKSVSLKGN  423 (608)
Q Consensus       346 ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~--~lp~~~f~~l~~L~~L~L~~N  423 (608)
                      +++|+++++++..|.....                   -.....|+.|++++|. +.  .+++.+|..+++|+.|++++|
T Consensus       271 l~~N~l~~~~~~~~~~~~~-------------------~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          271 LHTNNITKVGVNDFCPVGF-------------------GVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCSSCCCBCCTTSSSCSSC-------------------CSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CCCCCCCccChhHcccccc-------------------ccccccccceEeecCc-ccccccCcccccccchhhhhhcccc
Confidence            4566666655444332100                   0012556677777776 43  455556667777777777666


Q ss_pred             c
Q psy3330         424 S  424 (608)
Q Consensus       424 ~  424 (608)
                      +
T Consensus       331 ~  331 (332)
T 2ft3_A          331 K  331 (332)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.8e-31  Score=268.58  Aligned_cols=296  Identities=23%  Similarity=0.286  Sum_probs=213.2

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      .+++.++++++.++.+|..+.  ++++.|++++|+++++++..|.++++|++|+|++|.++.+.+..|.++++|++|+++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            367889999999988887553  688999999999999988889999999999999999998888889999999999999


Q ss_pred             CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC--CCcccccCCCCCCceEEEccCCC
Q psy3330         131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD--VPNNVLSNLPHQSLHYLYLNENL  208 (608)
Q Consensus       131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~~~L~~L~L~~n~  208 (608)
                      +|.++.++...+   ++|++|++++|.+..+. +..|.++++|++|++++|.+..  +.+..+..+  ++|+.|++++|.
T Consensus       109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~~L~~L~l~~n~  182 (330)
T 1xku_A          109 KNQLKELPEKMP---KTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM--KKLSYIRIADTN  182 (330)
T ss_dssp             SSCCSBCCSSCC---TTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC--TTCCEEECCSSC
T ss_pred             CCcCCccChhhc---ccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCC--CCcCEEECCCCc
Confidence            999887765443   68899999999988887 7778888999999998888864  555566666  458888888887


Q ss_pred             CccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChh
Q psy3330         209 IETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV  288 (608)
Q Consensus       209 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  288 (608)
                      ++.++...    .++|+.|++++|.++++.+..|.++++|++|++++|+++++++..+..+++|+.|++++|+++.++. 
T Consensus       183 l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-  257 (330)
T 1xku_A          183 ITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-  257 (330)
T ss_dssp             CCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-
T ss_pred             cccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-
Confidence            77665433    2567777777777777767777777777777777777777776667777777777777777775543 


Q ss_pred             hhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccc
Q psy3330         289 AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLV  368 (608)
Q Consensus       289 ~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l  368 (608)
                      .+..+++|+                                             +|++++|+++++++..|.....    
T Consensus       258 ~l~~l~~L~---------------------------------------------~L~l~~N~i~~~~~~~f~~~~~----  288 (330)
T 1xku_A          258 GLADHKYIQ---------------------------------------------VVYLHNNNISAIGSNDFCPPGY----  288 (330)
T ss_dssp             TTTTCSSCC---------------------------------------------EEECCSSCCCCCCTTSSSCSSC----
T ss_pred             hhccCCCcC---------------------------------------------EEECCCCcCCccChhhcCCccc----
Confidence            244444443                                             4455666666666554432110    


Q ss_pred             ccccCCCCCcCChhhhcCCcccceeecccCcccc--ccCcccCCCCCCCCEEEcCCCc
Q psy3330         369 KINLIPNLDSIDQRAFVDNIQLETVIINENMNLK--QLPSKLFQGNTNLKSVSLKGNS  424 (608)
Q Consensus       369 ~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~--~lp~~~f~~l~~L~~L~L~~N~  424 (608)
                                     ......++.|++++|. +.  .+++..|..+.+++.++|++|+
T Consensus       289 ---------------~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          289 ---------------NTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             ---------------CTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ---------------ccccccccceEeecCc-ccccccCccccccccceeEEEecccC
Confidence                           0113556677777776 43  3555557777777777777664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=9.8e-32  Score=294.88  Aligned_cols=290  Identities=22%  Similarity=0.286  Sum_probs=240.3

Q ss_pred             cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330          72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL  151 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  151 (608)
                      .+.+++.|++++|.++.+|+..|.++++|++|+|++|.++.+++..|.++++|++|+|++|.++++++..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            36788999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccC
Q psy3330         152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS  231 (608)
Q Consensus       152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  231 (608)
                      +|++|.++.++ +..|.++++|++|++++|.+..+++..+..+  ++|+.|++++|.++++.   +.. +++|+.|++++
T Consensus       129 ~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~---~~~-l~~L~~L~l~~  201 (597)
T 3oja_B          129 VLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVD---LSL-IPSLFHANVSY  201 (597)
T ss_dssp             ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC--TTCCEEECTTSCCSBCC---GGG-CTTCSEEECCS
T ss_pred             EeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCCChhhhhcC--CcCcEEECcCCCCCCcC---hhh-hhhhhhhhccc
Confidence            99999999887 7778999999999999999999888888887  56999999999888764   333 67788888888


Q ss_pred             CCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCC
Q psy3330         232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID  311 (608)
Q Consensus       232 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~  311 (608)
                      |.++++     ...++|+.|++++|.++.++...   .++|+.|++++|.+++.  ..+..+++|+.             
T Consensus       202 n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~-------------  258 (597)
T 3oja_B          202 NLLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVE-------------  258 (597)
T ss_dssp             SCCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSE-------------
T ss_pred             Cccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCE-------------
Confidence            887654     33567888888888887776432   25788888888888764  33555555544             


Q ss_pred             cccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccc
Q psy3330         312 QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLE  391 (608)
Q Consensus       312 ~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~  391 (608)
                                                      |++++|.+++++                         +..|.++++|+
T Consensus       259 --------------------------------L~Ls~N~l~~~~-------------------------~~~~~~l~~L~  281 (597)
T 3oja_B          259 --------------------------------VDLSYNELEKIM-------------------------YHPFVKMQRLE  281 (597)
T ss_dssp             --------------------------------EECCSSCCCEEE-------------------------SGGGTTCSSCC
T ss_pred             --------------------------------EECCCCccCCCC-------------------------HHHhcCccCCC
Confidence                                            444566665554                         34556678899


Q ss_pred             eeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330         392 TVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       392 ~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                      .|+|++|. +..+|.. +..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++..
T Consensus       282 ~L~Ls~N~-l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          282 RLYISNNR-LVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             EEECTTSC-CCEEECS-SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             EEECCCCC-CCCCCcc-cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC
Confidence            99999997 8888876 678999999999999999999888788999999999999965

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.98  E-value=1.9e-30  Score=274.13  Aligned_cols=237  Identities=20%  Similarity=0.214  Sum_probs=169.5

Q ss_pred             EEEecCCCCccccCccC--ccccEEEeccCCCc-ccccccccCCCc-------------cEEEeeCCCCcccCccccccc
Q psy3330          34 EASCTDAGLEVVPIQLN--PEVQTIILRENRIS-NVHYTLSFYIEL-------------RSLDLSVNKINVLGSHNFEYQ   97 (608)
Q Consensus        34 ~v~C~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~l~~~~~~~~~L-------------~~L~Ls~n~l~~i~~~~f~~l   97 (608)
                      .++.++..+.++|..+.  +++++|++++|.+. .+|.+++++.+|             ++|++++|+++++|..    .
T Consensus        15 ~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----~   90 (454)
T 1jl5_A           15 EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----P   90 (454)
T ss_dssp             -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----C
T ss_pred             hhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC----c
Confidence            45555666778887664  57888899988887 477777777765             8889998888887762    3


Q ss_pred             ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330          98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK  177 (608)
Q Consensus        98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  177 (608)
                      ++|++|++++|.+++++.    .+++|++|++++|++++++..    .++|++|++++|.+++++   .|+++++|++|+
T Consensus        91 ~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp---~~~~l~~L~~L~  159 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP---ELQNSSFLKIID  159 (454)
T ss_dssp             TTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC---CCTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc---ccCCCCCCCEEE
Confidence            688889998888888763    247888888888888876431    268888888888888753   388888888888


Q ss_pred             ccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCc
Q psy3330         178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN  257 (608)
Q Consensus       178 L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  257 (608)
                      +++|+++++|...      .+|++|++++|.+++++  .+.. +++|+.|++++|.+++++..    .++|++|++++|+
T Consensus       160 l~~N~l~~lp~~~------~~L~~L~L~~n~l~~l~--~~~~-l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~  226 (454)
T 1jl5_A          160 VDNNSLKKLPDLP------PSLEFIAAGNNQLEELP--ELQN-LPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNI  226 (454)
T ss_dssp             CCSSCCSCCCCCC------TTCCEEECCSSCCSSCC--CCTT-CTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSC
T ss_pred             CCCCcCcccCCCc------ccccEEECcCCcCCcCc--cccC-CCCCCEEECCCCcCCcCCCC----cCcccEEECcCCc
Confidence            8888888776431      45888888888888864  4665 88888888888888875431    3588888888888


Q ss_pred             CCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCC
Q psy3330         258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI  304 (608)
Q Consensus       258 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~  304 (608)
                      ++.+|.  +..+++|+.|++++|++++++.    ..++|+.|+++++
T Consensus       227 l~~lp~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N  267 (454)
T 1jl5_A          227 LEELPE--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDN  267 (454)
T ss_dssp             CSSCCC--CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSS
T ss_pred             CCcccc--cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCC
Confidence            888873  7888888888888888887653    2467888888643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3e-30  Score=259.59  Aligned_cols=261  Identities=20%  Similarity=0.191  Sum_probs=230.8

Q ss_pred             CceEEEecCCCCccccCccCccccEEEeccCCCcc---cccccccCCCccEEEeeC-CCCcccCcccccccccccEEEcc
Q psy3330          31 QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISN---VHYTLSFYIELRSLDLSV-NKINVLGSHNFEYQNKLLNLNIS  106 (608)
Q Consensus        31 ~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~---l~~~~~~~~~L~~L~Ls~-n~l~~i~~~~f~~l~~L~~L~Ls  106 (608)
                      .|..|.|....       ...++++|+|++|.+++   +|..+.++++|++|++++ |.+.+..+..|.++++|++|+|+
T Consensus        37 ~w~gv~C~~~~-------~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls  109 (313)
T 1ogq_A           37 TWLGVLCDTDT-------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT  109 (313)
T ss_dssp             CSTTEEECCSS-------SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE
T ss_pred             CCcceEeCCCC-------CCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc
Confidence            57789997543       23579999999999984   788999999999999995 99987777789999999999999


Q ss_pred             CCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCC-CccEEEccCCCCCC
Q psy3330         107 YNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLK-SLRILKLDNNQILD  185 (608)
Q Consensus       107 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~  185 (608)
                      +|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++.. +..+..++ +|++|++++|++.+
T Consensus       110 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             EECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEEE
T ss_pred             CCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC-CHHHhhhhhcCcEEECcCCeeec
Confidence            99999777778999999999999999999888889999999999999999998665 77888888 99999999999997


Q ss_pred             CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330         186 VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ  265 (608)
Q Consensus       186 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  265 (608)
                      ..+..+..+  . |+.|++++|.+++..+..|.. +++|+.|++++|.+++..+. +..+++|++|++++|++++..+..
T Consensus       189 ~~~~~~~~l--~-L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~  263 (313)
T 1ogq_A          189 KIPPTFANL--N-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             ECCGGGGGC--C-CSEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred             cCChHHhCC--c-ccEEECcCCcccCcCCHHHhc-CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence            777777776  3 999999999999988888887 99999999999999876554 788999999999999999655678


Q ss_pred             hhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCC
Q psy3330         266 LSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP  305 (608)
Q Consensus       266 ~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~  305 (608)
                      +..+++|+.|++++|++++..|.. ..+++|+.+++++++
T Consensus       264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            999999999999999999877764 788899999997554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.96  E-value=1.4e-28  Score=244.19  Aligned_cols=218  Identities=27%  Similarity=0.378  Sum_probs=175.5

Q ss_pred             hcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCC
Q psy3330         167 FSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLR  246 (608)
Q Consensus       167 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  246 (608)
                      +.++++++++++++++++.+|....     +.++.|++++|.++++.+..|.. +++|+.|++++|.++.+.+.  ..++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~--~~l~   77 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELTKLQVD--GTLP   77 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTT-CTTCCEEECTTSCCCEEECC--SCCT
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhhc-CCCCCEEECCCCccCcccCC--CCCC
Confidence            5666777777777777777765432     45778888888887777777776 78888888888888776443  6778


Q ss_pred             ccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccc
Q psy3330         247 TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLS  326 (608)
Q Consensus       247 ~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~  326 (608)
                      +|++|++++|+++.+|. .+..+++|+.|++++|+++++++..|..+++|+.|++                         
T Consensus        78 ~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L-------------------------  131 (290)
T 1p9a_G           78 VLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL-------------------------  131 (290)
T ss_dssp             TCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC-------------------------
T ss_pred             cCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC-------------------------
Confidence            88888888888888774 6778888888888888888888777777777665444                         


Q ss_pred             cccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCc
Q psy3330         327 IPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS  406 (608)
Q Consensus       327 ~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~  406 (608)
                                          ++|+++++++                         ..|..+++|+.|++++|+ ++.+|.
T Consensus       132 --------------------~~N~l~~~~~-------------------------~~~~~l~~L~~L~L~~N~-l~~l~~  165 (290)
T 1p9a_G          132 --------------------KGNELKTLPP-------------------------GLLTPTPKLEKLSLANNN-LTELPA  165 (290)
T ss_dssp             --------------------TTSCCCCCCT-------------------------TTTTTCTTCCEEECTTSC-CSCCCT
T ss_pred             --------------------CCCCCCccCh-------------------------hhcccccCCCEEECCCCc-CCccCH
Confidence                                5555555443                         445566888899999997 889999


Q ss_pred             ccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHhh
Q psy3330         407 KLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQ  464 (608)
Q Consensus       407 ~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~  464 (608)
                      ++|.++++|+.|+|++|+|+.+|..++...+|+.++|++|||.|+|.+.|+..|++.+
T Consensus       166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~  223 (290)
T 1p9a_G          166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (290)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999854

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.96  E-value=4.2e-29  Score=241.21  Aligned_cols=224  Identities=23%  Similarity=0.385  Sum_probs=168.3

Q ss_pred             CCCCCCceecC-CceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCC-CcccCcccccc
Q psy3330          20 AICPSRCQCFD-QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNK-INVLGSHNFEY   96 (608)
Q Consensus        20 ~~Cp~~C~c~~-~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~-l~~i~~~~f~~   96 (608)
                      +.||..|.|.. ....|+|.+  ++++|. +++++++|++++|+++.++. .+.++++|++|++++|. ++.+++..|.+
T Consensus         2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~   78 (239)
T 2xwt_C            2 GCSSPPCECHQEEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN   78 (239)
T ss_dssp             -CCSSSCSEEECSTTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES
T ss_pred             CCCCCCCeeCCCCcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC
Confidence            67999999987 778899987  899999 99999999999999998876 78889999999999996 88888888888


Q ss_pred             cccccEEEccC-CCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc---EEEccCC-CCCccCchhhhcCCC
Q psy3330          97 QNKLLNLNISY-NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE---LLILSFN-NITYFEDSEIFSSLK  171 (608)
Q Consensus        97 l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~l~  171 (608)
                      +++|++|++++ |+++.+++.+|.++++|++|++++|++++++.  |..+++|+   +|++++| .++.++ +..|.+++
T Consensus        79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~  155 (239)
T 2xwt_C           79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLC  155 (239)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTB
T ss_pred             CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcC-cccccchh
Confidence            89999999988 88888888888888888888888888888654  77777777   8888887 777776 56677777


Q ss_pred             Ccc-EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCC-CCccCcccccCC-Ccc
Q psy3330         172 SLR-ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI-ISFINESSFVTL-RTL  248 (608)
Q Consensus       172 ~L~-~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L  248 (608)
                      +|+ +|++++|+++.++...+..                            ++|+.|++++|+ ++.+++..|.++ ++|
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~----------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNG----------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTT----------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred             cceeEEEcCCCCCcccCHhhcCC----------------------------CCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence            777 7777777666655544332                            345555555553 555555555555 666


Q ss_pred             CEEeccCCcCCCCChhhhhCCCCCCEEeccCC
Q psy3330         249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN  280 (608)
Q Consensus       249 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N  280 (608)
                      +.|++++|+++++|+.   .+++|+.|+++++
T Consensus       208 ~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          208 SLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             SEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             cEEECCCCccccCChh---HhccCceeeccCc
Confidence            6666666666666543   4456666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=5.1e-28  Score=238.03  Aligned_cols=216  Identities=25%  Similarity=0.463  Sum_probs=165.0

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEE
Q psy3330         172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSL  251 (608)
Q Consensus       172 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  251 (608)
                      +.+.+++++++++.+|...    + .+++.|++++|.++++++..|.. +++|++|++++|.++.+.+..|.++++|++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~----~-~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI----P-ADTKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC----C-TTCSEEECCSSCCSCCCTTSSSS-CTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCEEEccCCCCCccCCCC----C-CCCCEEECcCCCCCeeCHHHhcC-CCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            4566777777776666432    2 44777777777777776666665 7777777777777777777677777777777


Q ss_pred             eccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcccccccc
Q psy3330         252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAF  331 (608)
Q Consensus       252 ~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~  331 (608)
                      ++++|+++++++..|..+++|+.|++++|.++++++..|..+++|+.|++                              
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------------------------------  140 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL------------------------------  140 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC------------------------------
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC------------------------------
Confidence            77777777777777777777778888777777777766666666655444                              


Q ss_pred             ccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCC
Q psy3330         332 SLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQG  411 (608)
Q Consensus       332 ~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~  411 (608)
                                     ++|.+++++                         ...|..+++|++|++++|+ ++.++...|.+
T Consensus       141 ---------------s~n~l~~~~-------------------------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  179 (270)
T 2o6q_A          141 ---------------GYNELQSLP-------------------------KGVFDKLTSLKELRLYNNQ-LKRVPEGAFDK  179 (270)
T ss_dssp             ---------------CSSCCCCCC-------------------------TTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred             ---------------CCCcCCccC-------------------------HhHccCCcccceeEecCCc-CcEeChhHhcc
Confidence                           445544443                         3445667888999999997 88899888999


Q ss_pred             CCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHhh
Q psy3330         412 NTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQLQ  464 (608)
Q Consensus       412 l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~~  464 (608)
                      +++|+.|+|++|+++.+|+..+ .+++|+.|++++|||.|+|+ +.|+..|++..
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~  234 (270)
T 2o6q_A          180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK  234 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHH
T ss_pred             CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhh
Confidence            9999999999999999998766 68999999999999999997 78999998743

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=1.1e-28  Score=243.92  Aligned_cols=235  Identities=24%  Similarity=0.345  Sum_probs=193.1

Q ss_pred             CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEE
Q psy3330          25 RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNL  103 (608)
Q Consensus        25 ~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L  103 (608)
                      +|.|......++|.+.+++++|..+|+++++|++++|.++.++. .+.++++|++|++++|.++.+++..|.++++|++|
T Consensus         2 ~C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (276)
T 2z62_A            2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (276)
T ss_dssp             CSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence            68887666789999999999999999999999999999999876 78899999999999999999998889999999999


Q ss_pred             EccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCC
Q psy3330         104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQI  183 (608)
Q Consensus       104 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  183 (608)
                      ++++|.++.+++..|.++++|++|++++|.+..+.+..+.++++|++|++++|.+..+..+..|..+++|++|++++|++
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            99999999988888999999999999999999888777888899999999999888754367788888888888888887


Q ss_pred             CCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCcc-EEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC
Q psy3330         184 LDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLH-TLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP  262 (608)
Q Consensus       184 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~  262 (608)
                      +.+++..+..+.  +                      ++.+. .|++++|.++.+.+..+... +|++|++++|++++++
T Consensus       162 ~~~~~~~~~~l~--~----------------------L~~l~l~L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~  216 (276)
T 2z62_A          162 QSIYCTDLRVLH--Q----------------------MPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVP  216 (276)
T ss_dssp             CEECGGGGHHHH--T----------------------CTTCCEEEECCSSCCCEECTTSSCSC-CEEEEECCSSCCSCCC
T ss_pred             CcCCHHHhhhhh--h----------------------ccccceeeecCCCcccccCccccCCC-cccEEECCCCceeecC
Confidence            776655444331  1                      22222 56777777776665555443 7888888888888888


Q ss_pred             hhhhhCCCCCCEEeccCCCCCc
Q psy3330         263 TKQLSKLSALVNLDLSGNNFSN  284 (608)
Q Consensus       263 ~~~~~~l~~L~~L~Ls~N~l~~  284 (608)
                      +..+..+++|+.|++++|+++.
T Consensus       217 ~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          217 DGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TTTTTTCCSCCEEECCSSCBCC
T ss_pred             HhHhcccccccEEEccCCcccc
Confidence            7778888888888888888875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=3.6e-31  Score=281.71  Aligned_cols=382  Identities=17%  Similarity=0.142  Sum_probs=258.9

Q ss_pred             cCccccEEEeccCCCccccc--ccccCCCccEEEeeCCCCcccC----cccccccccccEEEccCCCCCCCChhh-hcCC
Q psy3330          49 LNPEVQTIILRENRISNVHY--TLSFYIELRSLDLSVNKINVLG----SHNFEYQNKLLNLNISYNEISALSKDT-FKGL  121 (608)
Q Consensus        49 ~~~~l~~L~L~~n~i~~l~~--~~~~~~~L~~L~Ls~n~l~~i~----~~~f~~l~~L~~L~Ls~n~i~~~~~~~-~~~l  121 (608)
                      +|+++++|++++|.++..+.  .+..+++|++|++++|+++...    +..+..+++|++|+|++|.++...... +..+
T Consensus         1 l~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             -CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            36789999999999987553  4788999999999999988542    345777899999999999987654433 3445


Q ss_pred             C----cCcEeeccCCcCCcc----ChhhhCCCCCCcEEEccCCCCCccCchhh-----hcCCCCccEEEccCCCCCCCC-
Q psy3330         122 K----ELKTLDLSYNKISVI----NKTAFRDTLHLELLILSFNNITYFEDSEI-----FSSLKSLRILKLDNNQILDVP-  187 (608)
Q Consensus       122 ~----~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~-  187 (608)
                      +    +|++|++++|+++..    .+..+..+++|++|++++|.+.... +..     +...++|++|++++|+++... 
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG-LQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH-HHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            5    699999999998853    3678889999999999999987643 222     233568999999999888644 


Q ss_pred             ---cccccCCCCCCceEEEccCCCCccccCCCccc----cCCCccEEEccCCCCCcc----CcccccCCCccCEEeccCC
Q psy3330         188 ---NNVLSNLPHQSLHYLYLNENLIETVLDNSFPF----TLTNLHTLALSSNIISFI----NESSFVTLRTLHSLDLSNN  256 (608)
Q Consensus       188 ---~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n  256 (608)
                         +..+..+  ++|++|++++|.++......+..    ..++|+.|++++|.++..    .+..+..+++|++|++++|
T Consensus       160 ~~l~~~l~~~--~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          160 EPLASVLRAK--PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             HHHHHHHHHC--TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHhhC--CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence               2334445  56999999999987654333321    256899999999988864    2456677899999999999


Q ss_pred             cCCCCC-----hhhhhCCCCCCEEeccCCCCCccC----hhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcccc
Q psy3330         257 NLSAIP-----TKQLSKLSALVNLDLSGNNFSNID----SVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSI  327 (608)
Q Consensus       257 ~l~~l~-----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~  327 (608)
                      +++...     +..+..+++|+.|++++|.++...    +..+..+++|+.|+++++.        +....+..+...  
T Consensus       238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--------i~~~~~~~l~~~--  307 (461)
T 1z7x_W          238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE--------LGDEGARLLCET--  307 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC--------CHHHHHHHHHHH--
T ss_pred             cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC--------CchHHHHHHHHH--
Confidence            887632     333446889999999999988742    4456678899999886432        111111111000  


Q ss_pred             ccccccCCCCCceecEEecCCCCCCCcC----hhhhcccccccccccccCCCCCcCChhhhcC-----CcccceeecccC
Q psy3330         328 PLAFSLTPLGTLKCDRLDLSGNNFSNID----SVAFKSLFSLKLVKINLIPNLDSIDQRAFVD-----NIQLETVIINEN  398 (608)
Q Consensus       328 ~~~~~~~~~~~~~l~~L~ls~n~l~~~~----~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~-----l~~L~~L~Ls~N  398 (608)
                            ......++++|++++|.+++..    +..+..+++|+.|+++. +.+...+...+..     .++|++|++++|
T Consensus       308 ------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          308 ------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             ------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             ------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC-CccccccHHHHHHHHcCCCCceEEEECCCC
Confidence                  0001124588899999888764    33455567777777776 4555544433332     557777777777


Q ss_pred             cccc-----ccCcccCCCCCCCCEEEcCCCcccccCC-----CCC-CCCCCCEEEccCCcccccc
Q psy3330         399 MNLK-----QLPSKLFQGNTNLKSVSLKGNSLSHLEA-----SHF-PLERISFLDLSDNPLHCDC  452 (608)
Q Consensus       399 ~~l~-----~lp~~~f~~l~~L~~L~L~~N~l~~l~~-----~~~-~l~~L~~L~L~~N~~~CdC  452 (608)
                      + ++     .+|.. +..+++|++|+|++|+++....     .+. ...+|+.|++.++.+.+.+
T Consensus       381 ~-i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          381 D-VSDSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             C-CCHHHHHHHHHH-HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             C-CChhhHHHHHHH-HHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence            6 44     45544 5556777777777777663211     111 1345677777777766543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=4.2e-29  Score=251.17  Aligned_cols=254  Identities=19%  Similarity=0.165  Sum_probs=142.2

Q ss_pred             CCccEEEeeCCCCcc--cCcccccccccccEEEccC-CCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330          74 IELRSLDLSVNKINV--LGSHNFEYQNKLLNLNISY-NEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL  150 (608)
Q Consensus        74 ~~L~~L~Ls~n~l~~--i~~~~f~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  150 (608)
                      .+++.|++++|++++  ..+..|.++++|++|++++ |.+.+..+..|.++++|++|++++|.+++..+..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            456666666666664  3334566666666666663 5555444455666666666666666665555555555555555


Q ss_pred             EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCC-CccEEEc
Q psy3330         151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT-NLHTLAL  229 (608)
Q Consensus       151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L  229 (608)
                      |++++|.+.+.. +..|..+++|++|++++|++++                          ..+..+.. ++ +|+.|++
T Consensus       130 L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~--------------------------~~p~~l~~-l~~~L~~L~L  181 (313)
T 1ogq_A          130 LDFSYNALSGTL-PPSISSLPNLVGITFDGNRISG--------------------------AIPDSYGS-FSKLFTSMTI  181 (313)
T ss_dssp             EECCSSEEESCC-CGGGGGCTTCCEEECCSSCCEE--------------------------ECCGGGGC-CCTTCCEEEC
T ss_pred             EeCCCCccCCcC-ChHHhcCCCCCeEECcCCcccC--------------------------cCCHHHhh-hhhcCcEEEC
Confidence            555555555433 4445555555555554444432                          22222222 22 3444444


Q ss_pred             cCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCC
Q psy3330         230 SSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDS  309 (608)
Q Consensus       230 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~  309 (608)
                      ++|.+++..+..+..++ |++|++++|++++.++..+..+++|+.|++++|.+++..+.                     
T Consensus       182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------  239 (313)
T 1ogq_A          182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---------------------  239 (313)
T ss_dssp             CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---------------------
T ss_pred             cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---------------------
Confidence            44444433333343333 44444444444444444444444444444444444322211                     


Q ss_pred             CCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcc
Q psy3330         310 IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQ  389 (608)
Q Consensus       310 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~  389 (608)
                                                                                                +..+++
T Consensus       240 --------------------------------------------------------------------------~~~l~~  245 (313)
T 1ogq_A          240 --------------------------------------------------------------------------VGLSKN  245 (313)
T ss_dssp             --------------------------------------------------------------------------CCCCTT
T ss_pred             --------------------------------------------------------------------------ccccCC
Confidence                                                                                      122466


Q ss_pred             cceeecccCccccccCcccCCCCCCCCEEEcCCCccc-ccCCCCCCCCCCCEEEccCCccccccC
Q psy3330         390 LETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLS-HLEASHFPLERISFLDLSDNPLHCDCN  453 (608)
Q Consensus       390 L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~L~~N~~~CdC~  453 (608)
                      |++|++++|++.+.+|.. |..+++|+.|+|++|+++ .+|.. ..+++|+.+++++||+.|+-+
T Consensus       246 L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          246 LNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            677777777644466655 778888999999999888 55554 678889999999999888754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=8.8e-28  Score=237.28  Aligned_cols=238  Identities=23%  Similarity=0.325  Sum_probs=156.1

Q ss_pred             EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330         151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS  230 (608)
Q Consensus       151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  230 (608)
                      ++..+..+..++  ..+.  ++|++|++++|+++.+++..+..+  ++|++|++++|.++++.+..|.. +++|++|+++
T Consensus        12 ~~c~~~~l~~ip--~~l~--~~l~~L~ls~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~   84 (276)
T 2z62_A           12 YQCMELNFYKIP--DNLP--FSTKNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILT   84 (276)
T ss_dssp             EECTTSCCSSCC--SSSC--TTCCEEECTTCCCCEECTTTTTTC--TTCSEEECTTCCCCEECTTTTTT-CTTCCEEECT
T ss_pred             EEecCCCccccC--CCCC--CCccEEECCCCcccccCHhHhccc--cCCcEEECCCCcCCccCHHHccC-CcCCCEEECC
Confidence            444444454443  2221  356666666666666665555555  34666666666666665555554 6666666666


Q ss_pred             CCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccC-hhhhCCCCCCceeeccCCCCCCC
Q psy3330         231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID-SVAFKSLFSLKLVKINLIPNLDS  309 (608)
Q Consensus       231 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~f~~l~~L~~L~l~~~~~l~~  309 (608)
                      +|.++++.+..|.++++|++|++++|+++++++..+..+++|+.|++++|.++++. +..|..+++|+            
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~------------  152 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE------------  152 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC------------
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC------------
Confidence            66666665555666666666666666666655545666666666666666665543 44444444443            


Q ss_pred             CCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcc
Q psy3330         310 IDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQ  389 (608)
Q Consensus       310 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~  389 (608)
                                                       +|++++|+++++++..|..+.+|+.+.+                   
T Consensus       153 ---------------------------------~L~Ls~N~l~~~~~~~~~~l~~L~~l~l-------------------  180 (276)
T 2z62_A          153 ---------------------------------HLDLSSNKIQSIYCTDLRVLHQMPLLNL-------------------  180 (276)
T ss_dssp             ---------------------------------EEECCSSCCCEECGGGGHHHHTCTTCCE-------------------
T ss_pred             ---------------------------------EEECCCCCCCcCCHHHhhhhhhccccce-------------------
Confidence                                             4555667776666655554433322111                   


Q ss_pred             cceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHh
Q psy3330         390 LETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQL  463 (608)
Q Consensus       390 L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~  463 (608)
                        .|++++|+ ++.++...|.. .+|+.|+|++|+++.+|+..+ .+++|+.|++++|||.|+|+ +.|+..|.+.
T Consensus       181 --~L~ls~n~-l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~  252 (276)
T 2z62_A          181 --SLDLSLNP-MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  252 (276)
T ss_dssp             --EEECCSSC-CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred             --eeecCCCc-ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHh
Confidence              78999997 88898886764 489999999999999998875 68999999999999999996 7899999874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=1.3e-27  Score=235.27  Aligned_cols=210  Identities=28%  Similarity=0.457  Sum_probs=162.4

Q ss_pred             CCCCC---CceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccc
Q psy3330          20 AICPS---RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFE   95 (608)
Q Consensus        20 ~~Cp~---~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~   95 (608)
                      +.|++   .|.|......++|++.+++.+|..+|+++++|++++|.++.++. .+.++++|++|++++|.++.+++..|.
T Consensus         3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~   82 (270)
T 2o6q_A            3 ALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK   82 (270)
T ss_dssp             CCBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred             ccCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc
Confidence            55665   49998777899999999999999999999999999999998875 788889999999999999888888888


Q ss_pred             ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330          96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI  175 (608)
Q Consensus        96 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  175 (608)
                      ++++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|++|++++|.++.++ +..|..+++|++
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~  161 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKE  161 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccce
Confidence            8889999999988888888888888888888888888888888777888888888888888888776 566777777777


Q ss_pred             EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCC
Q psy3330         176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI  233 (608)
Q Consensus       176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  233 (608)
                      |++++|+++.+++..+..+  ++|+.|++++|.++++++..|.. +++|+.|++++|.
T Consensus       162 L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~  216 (270)
T 2o6q_A          162 LRLYNNQLKRVPEGAFDKL--TELKTLKLDNNQLKRVPEGAFDS-LEKLKMLQLQENP  216 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTC--TTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSC
T ss_pred             eEecCCcCcEeChhHhccC--CCcCEEECCCCcCCcCCHHHhcc-ccCCCEEEecCCC
Confidence            7777777777666555544  33555555555555444444433 4444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.95  E-value=3.7e-28  Score=248.41  Aligned_cols=247  Identities=23%  Similarity=0.326  Sum_probs=166.7

Q ss_pred             CCCCC-ceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCC-cccCccccccc
Q psy3330          21 ICPSR-CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKI-NVLGSHNFEYQ   97 (608)
Q Consensus        21 ~Cp~~-C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l-~~i~~~~f~~l   97 (608)
                      .||+. |+|..  ..|+|++.++++||.++|+++++|+|++|+|+.+|+ +|.++++|++|+|++|++ +.+++++|.++
T Consensus         1 gCp~~~C~C~~--~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L   78 (350)
T 4ay9_X            1 GCHHRICHCSN--RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL   78 (350)
T ss_dssp             -CCCSSSEEET--TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred             CCCCCccEeeC--CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence            49986 99964  579999999999999999999999999999999886 688899999999999987 45777888888


Q ss_pred             ccccE-EEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccC-CCCCccCchhhhcCCC-Ccc
Q psy3330          98 NKLLN-LNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSF-NNITYFEDSEIFSSLK-SLR  174 (608)
Q Consensus        98 ~~L~~-L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~-~L~  174 (608)
                      +++++ +.++.|+++.+++++|.++++|++|++++|+++.+++..+....++..|++.+ +.+..++ +..|..+. .++
T Consensus        79 ~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-~~~f~~~~~~l~  157 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFESV  157 (350)
T ss_dssp             TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-TTSSTTSBSSCE
T ss_pred             hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc-ccchhhcchhhh
Confidence            88765 55667888888888888888888888888888888777776677777777755 4566665 45555543 456


Q ss_pred             EEEccCCCCCCCCcccccCCCCCCceEEEccC-CCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEec
Q psy3330         175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNE-NLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDL  253 (608)
Q Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  253 (608)
                      .|++++|+++.++..++..   .+++.+++.+ |.++.+++..|.. +++|+.|++++|+++.+++..|.+++.|+.++ 
T Consensus       158 ~L~L~~N~i~~i~~~~f~~---~~L~~l~l~~~n~l~~i~~~~f~~-l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~-  232 (350)
T 4ay9_X          158 ILWLNKNGIQEIHNSAFNG---TQLDELNLSDNNNLEELPNDVFHG-ASGPVILDISRTRIHSLPSYGLENLKKLRARS-  232 (350)
T ss_dssp             EEECCSSCCCEECTTSSTT---EEEEEEECTTCTTCCCCCTTTTTT-EECCSEEECTTSCCCCCCSSSCTTCCEEECTT-
T ss_pred             hhccccccccCCChhhccc---cchhHHhhccCCcccCCCHHHhcc-CcccchhhcCCCCcCccChhhhccchHhhhcc-
Confidence            6666666666666554432   2355555542 4455554444444 55555555555555555443333333222221 


Q ss_pred             cCCcCCCCChhhhhCCCCCCEEecc
Q psy3330         254 SNNNLSAIPTKQLSKLSALVNLDLS  278 (608)
Q Consensus       254 s~n~l~~l~~~~~~~l~~L~~L~Ls  278 (608)
                       .+.++.+|+  +..+++|+.++++
T Consensus       233 -~~~l~~lP~--l~~l~~L~~l~l~  254 (350)
T 4ay9_X          233 -TYNLKKLPT--LEKLVALMEASLT  254 (350)
T ss_dssp             -CTTCCCCCC--TTTCCSCCEEECS
T ss_pred             -CCCcCcCCC--chhCcChhhCcCC
Confidence             123444442  4444555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=4.2e-27  Score=256.00  Aligned_cols=278  Identities=23%  Similarity=0.263  Sum_probs=221.2

Q ss_pred             CCCCCceecC-CceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330          21 ICPSRCQCFD-QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNK   99 (608)
Q Consensus        21 ~Cp~~C~c~~-~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~   99 (608)
                      .||..|.|.. ....++|++.+++.+|..+++++++|++++|.++.+|.   .+++|++|+|++|+++.++.    .+++
T Consensus        30 ~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~  102 (622)
T 3g06_A           30 VVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPG  102 (622)
T ss_dssp             HHHHHHHHHHHCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTT
T ss_pred             cCcccccccCCCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCC
Confidence            4677788863 36789999999999999999999999999999999987   57899999999999999887    6789


Q ss_pred             ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEcc
Q psy3330         100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLD  179 (608)
Q Consensus       100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  179 (608)
                      |++|++++|.++.++.    .+++|+.|++++|+++.++.    .+++|++|++++|.+++++  .   .+.+|+.|+++
T Consensus       103 L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~--~---~~~~L~~L~L~  169 (622)
T 3g06_A          103 LLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP--A---LPSELCKLWAY  169 (622)
T ss_dssp             CCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC--C---CCTTCCEEECC
T ss_pred             CCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcC--C---ccCCCCEEECC
Confidence            9999999999999875    57899999999999998865    2589999999999999874  2   35789999999


Q ss_pred             CCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCC
Q psy3330         180 NNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLS  259 (608)
Q Consensus       180 ~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  259 (608)
                      +|.++.++.    .+  ++|+.|++++|.+++++.     .+++|+.|++++|.++.++.    .+++|+.|++++|+++
T Consensus       170 ~N~l~~l~~----~~--~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~  234 (622)
T 3g06_A          170 NNQLTSLPM----LP--SGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT  234 (622)
T ss_dssp             SSCCSCCCC----CC--TTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCS
T ss_pred             CCCCCCCcc----cC--CCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccC
Confidence            999999882    23  669999999999988653     15789999999999987753    3578999999999999


Q ss_pred             CCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCc
Q psy3330         260 AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL  339 (608)
Q Consensus       260 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~  339 (608)
                      ++|    ..+++|+.|++++|.++.++.    .+++|+.|+++++        .+. .+|..+..++             
T Consensus       235 ~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N--------~L~-~lp~~l~~l~-------------  284 (622)
T 3g06_A          235 SLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN--------QLT-RLPESLIHLS-------------  284 (622)
T ss_dssp             CCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS--------CCC-SCCGGGGGSC-------------
T ss_pred             cCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC--------CCC-cCCHHHhhcc-------------
Confidence            987    456899999999999998775    4567777777532        111 2333222211             


Q ss_pred             eecEEecCCCCCCCcChhhhcccc
Q psy3330         340 KCDRLDLSGNNFSNIDSVAFKSLF  363 (608)
Q Consensus       340 ~l~~L~ls~n~l~~~~~~~~~~l~  363 (608)
                      +++.|++++|.+++..+..+..++
T Consensus       285 ~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          285 SETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             ccCEEEecCCCCCCcCHHHHHhcc
Confidence            345666666666666655555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=1.9e-26  Score=250.88  Aligned_cols=259  Identities=22%  Similarity=0.254  Sum_probs=184.8

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      .+++.|++++|.++.+|..+.  ++|++|++++|+|+.++.    .+++|++|+|++|+++.++.    .+++|++|+++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  109 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence            357889999999998887665  788999999999888876    46788899999988888775    67888888888


Q ss_pred             CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330         131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~  210 (608)
                      +|+++.++.    .+++|+.|++++|+++.++ .    .+++|++|++++|.+++++..    .  .+|+.|++++|.++
T Consensus       110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~lp-~----~l~~L~~L~Ls~N~l~~l~~~----~--~~L~~L~L~~N~l~  174 (622)
T 3g06_A          110 SNPLTHLPA----LPSGLCKLWIFGNQLTSLP-V----LPPGLQELSVSDNQLASLPAL----P--SELCKLWAYNNQLT  174 (622)
T ss_dssp             SCCCCCCCC----CCTTCCEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCCC----C--TTCCEEECCSSCCS
T ss_pred             CCcCCCCCC----CCCCcCEEECCCCCCCcCC-C----CCCCCCEEECcCCcCCCcCCc----c--CCCCEEECCCCCCC
Confidence            888888755    4677888888888888764 2    247888888888888776642    2  45777888887777


Q ss_pred             cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhh
Q psy3330         211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAF  290 (608)
Q Consensus       211 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f  290 (608)
                      +++    .. +++|+.|++++|.+++++.    .+++|+.|++++|.++.++.    .+++|+.|++++|.+++++    
T Consensus       175 ~l~----~~-~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----  237 (622)
T 3g06_A          175 SLP----ML-PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----  237 (622)
T ss_dssp             CCC----CC-CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----
T ss_pred             CCc----cc-CCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----
Confidence            754    22 5677777777777776543    24677777777777777663    2366777777777776654    


Q ss_pred             CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccccccccc
Q psy3330         291 KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKI  370 (608)
Q Consensus       291 ~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l  370 (608)
                      ..+++|                                             +.|++++|+|++++.              
T Consensus       238 ~~l~~L---------------------------------------------~~L~Ls~N~L~~lp~--------------  258 (622)
T 3g06_A          238 VLPSEL---------------------------------------------KELMVSGNRLTSLPM--------------  258 (622)
T ss_dssp             CCCTTC---------------------------------------------CEEECCSSCCSCCCC--------------
T ss_pred             CCCCcC---------------------------------------------cEEECCCCCCCcCCc--------------
Confidence            222333                                             344555666655442              


Q ss_pred             ccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccc
Q psy3330         371 NLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH  427 (608)
Q Consensus       371 ~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~  427 (608)
                                     .+++|+.|+|++|+ +..+|.. |.++++|+.|+|++|.++.
T Consensus       259 ---------------~~~~L~~L~Ls~N~-L~~lp~~-l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          259 ---------------LPSGLLSLSVYRNQ-LTRLPES-LIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             ---------------CCTTCCEEECCSSC-CCSCCGG-GGGSCTTCEEECCSCCCCH
T ss_pred             ---------------ccccCcEEeCCCCC-CCcCCHH-HhhccccCEEEecCCCCCC
Confidence                           13567777777776 6677765 6777777888888777774

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=2.1e-28  Score=246.71  Aligned_cols=72  Identities=22%  Similarity=0.284  Sum_probs=61.4

Q ss_pred             CcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHH
Q psy3330         387 NIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWIL  460 (608)
Q Consensus       387 l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~  460 (608)
                      +++|++|++++|+ ++.+|.. |..+++|+.|+|++|+|+.+|..+..+++|+.|++++|+|.|+|...|+..+
T Consensus       190 l~~L~~L~Ls~N~-l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          190 FAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             CTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             cccCCEEECCCCc-CCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence            3667778888886 7778777 7889999999999999999999888899999999999999999876666544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=8.8e-28  Score=246.13  Aligned_cols=269  Identities=19%  Similarity=0.236  Sum_probs=223.0

Q ss_pred             ccccCCCCCCceecC--------------CceEEEecCCCCccccCc-c--CccccEEEeccCCCccccc-ccccCCCcc
Q psy3330          16 KLNKAICPSRCQCFD--------------QKLEASCTDAGLEVVPIQ-L--NPEVQTIILRENRISNVHY-TLSFYIELR   77 (608)
Q Consensus        16 ~~~~~~Cp~~C~c~~--------------~~~~v~C~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~l~~-~~~~~~~L~   77 (608)
                      ..+...||+.|.|..              ....++.++..++.+|.. +  .+++++|++++|.++.+++ .+.++++|+
T Consensus        24 ~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           24 NQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             ---CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            344567999887752              346788888899988863 3  3689999999999999864 799999999


Q ss_pred             EEEeeCCCCcccCcccccccccccEEEccCCCCCCCCh-hhhcCCCcCcEeeccCC-cCCccChhhhCCCCCCcEEEccC
Q psy3330          78 SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK-DTFKGLKELKTLDLSYN-KISVINKTAFRDTLHLELLILSF  155 (608)
Q Consensus        78 ~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~  155 (608)
                      +|++++|+++.+++..|.++++|++|++++|+++.++. ..|.++++|++|++++| .++.+++..|.++++|++|++++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            99999999999999889999999999999999999987 67999999999999999 58888889999999999999999


Q ss_pred             CCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccc--cCCCccEEEccCCC
Q psy3330         156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF--TLTNLHTLALSSNI  233 (608)
Q Consensus       156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~  233 (608)
                      |.+.+.. +..|..+++|++|++++|.+..++...+..+  ++|+.|++++|.+++.....+..  ....++.++++++.
T Consensus       184 n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          184 SDLQSYE-PKSLKSIQNVSHLILHMKQHILLLEIFVDVT--SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK  260 (353)
T ss_dssp             TTCCEEC-TTTTTTCSEEEEEEEECSCSTTHHHHHHHHT--TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred             CCcCccC-HHHHhccccCCeecCCCCccccchhhhhhhc--ccccEEECCCCccccccccccccccccchhhcccccccc
Confidence            9999987 7889999999999999999988877666556  56999999999998876554331  25567888888887


Q ss_pred             CCcc----CcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccCh
Q psy3330         234 ISFI----NESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS  287 (608)
Q Consensus       234 l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  287 (608)
                      +.+.    .+..+..+++|++|++++|+++.+|...|..+++|+.|++++|++.+..+
T Consensus       261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            7652    24556778888888888888888887777888888888888888776443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=1.6e-29  Score=268.93  Aligned_cols=372  Identities=17%  Similarity=0.143  Sum_probs=268.7

Q ss_pred             EEEecCCCCccccCc----cCccccEEEeccCCCcc-----cccccccCCCccEEEeeCCCCcccCcccc-cccc----c
Q psy3330          34 EASCTDAGLEVVPIQ----LNPEVQTIILRENRISN-----VHYTLSFYIELRSLDLSVNKINVLGSHNF-EYQN----K   99 (608)
Q Consensus        34 ~v~C~~~~l~~ip~~----~~~~l~~L~L~~n~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f-~~l~----~   99 (608)
                      .++.++..++..+..    ..+++++|++++|.++.     ++..+..+++|++|++++|.+++.....+ ..++    +
T Consensus         7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~   86 (461)
T 1z7x_W            7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK   86 (461)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred             ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCc
Confidence            455555555554421    23689999999999984     45678889999999999999987544333 3344    7


Q ss_pred             ccEEEccCCCCCCC----ChhhhcCCCcCcEeeccCCcCCccChhh-----hCCCCCCcEEEccCCCCCccCc---hhhh
Q psy3330         100 LLNLNISYNEISAL----SKDTFKGLKELKTLDLSYNKISVINKTA-----FRDTLHLELLILSFNNITYFED---SEIF  167 (608)
Q Consensus       100 L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~---~~~~  167 (608)
                      |++|+|++|.++..    .+..+..+++|++|++++|.++......     +...++|++|++++|.++....   +..+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            99999999999853    3677899999999999999987654433     2346789999999999987431   4456


Q ss_pred             cCCCCccEEEccCCCCCCCCccccc-----CCCCCCceEEEccCCCCcccc----CCCccccCCCccEEEccCCCCCccC
Q psy3330         168 SSLKSLRILKLDNNQILDVPNNVLS-----NLPHQSLHYLYLNENLIETVL----DNSFPFTLTNLHTLALSSNIISFIN  238 (608)
Q Consensus       168 ~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~  238 (608)
                      ..+++|++|++++|.+.......+.     ..  ++|+.|++++|.++...    +..+.. +++|+.|++++|.++...
T Consensus       167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSP--CQLEALKLESCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSC--CCCCEEECTTSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHH
T ss_pred             hhCCCCCEEECcCCCcchHHHHHHHHHHhcCC--CCceEEEccCCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHH
Confidence            7789999999999998754333332     12  46999999999998742    344555 899999999999987542


Q ss_pred             -----cccccCCCccCEEeccCCcCCCCC----hhhhhCCCCCCEEeccCCCCCccChhhhC-----CCCCCceeeccCC
Q psy3330         239 -----ESSFVTLRTLHSLDLSNNNLSAIP----TKQLSKLSALVNLDLSGNNFSNIDSVAFK-----SLFSLKLVKINLI  304 (608)
Q Consensus       239 -----~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~-----~l~~L~~L~l~~~  304 (608)
                           +..+..+++|++|++++|+++...    +..+..+++|+.|++++|.++......+.     ..++|+.|+++++
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence                 333446889999999999998731    34677899999999999999865544442     3469999999754


Q ss_pred             CCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcc-----cccccccccccCCCCCc-
Q psy3330         305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKS-----LFSLKLVKINLIPNLDS-  378 (608)
Q Consensus       305 ~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~-----l~~L~~l~l~~~~~l~~-  378 (608)
                      .- .   ......++..+...             .++++|++++|.+++.....+..     .++|+.|+++. +.++. 
T Consensus       324 ~l-~---~~~~~~l~~~l~~~-------------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~i~~~  385 (461)
T 1z7x_W          324 SF-T---AACCSHFSSVLAQN-------------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD-CDVSDS  385 (461)
T ss_dssp             CC-B---GGGHHHHHHHHHHC-------------SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCCHH
T ss_pred             CC-c---hHHHHHHHHHHhhC-------------CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC-CCCChh
Confidence            31 1   00000122222211             15689999999998876665543     67999999998 66764 


Q ss_pred             ---CChhhhcCCcccceeecccCccccccCcccC-----CCCCCCCEEEcCCCcccc
Q psy3330         379 ---IDQRAFVDNIQLETVIINENMNLKQLPSKLF-----QGNTNLKSVSLKGNSLSH  427 (608)
Q Consensus       379 ---~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f-----~~l~~L~~L~L~~N~l~~  427 (608)
                         ..+..+..+++|++|++++|+ ++......+     ....+|+.|++.++.+..
T Consensus       386 ~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          386 SCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             hHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence               335567788999999999997 554321111     234578899988887763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=3.2e-28  Score=244.79  Aligned_cols=243  Identities=20%  Similarity=0.153  Sum_probs=160.1

Q ss_pred             EEEecCCCCccc---------cCccCccccEEEeccCCCcc--cccccc-------cCCCccEEEeeCCCCcccCcccc-
Q psy3330          34 EASCTDAGLEVV---------PIQLNPEVQTIILRENRISN--VHYTLS-------FYIELRSLDLSVNKINVLGSHNF-   94 (608)
Q Consensus        34 ~v~C~~~~l~~i---------p~~~~~~l~~L~L~~n~i~~--l~~~~~-------~~~~L~~L~Ls~n~l~~i~~~~f-   94 (608)
                      .+.|...+++.+         |..++..+++|+|++|.++.  ++..+.       ++++|++|++++|++++..+..+ 
T Consensus        37 ~~~~~~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           37 ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEEEEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             EEEccCCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            455655555555         66666667777777777754  333333       57777788888777775333333 


Q ss_pred             -cccccccEEEccCCCCCCCChhhhcCC-----CcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC-chhh-
Q psy3330          95 -EYQNKLLNLNISYNEISALSKDTFKGL-----KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE-DSEI-  166 (608)
Q Consensus        95 -~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~-  166 (608)
                       ..+++|++|+|++|+++++ +..+.++     ++|++|++++|+++++++..|.++++|++|++++|++.+.. .+.. 
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             6777788888887777777 3556655     77777888777777777777777777788888777765421 0122 


Q ss_pred             -hcCCCCccEEEccCCCCCCCC---cccccCCCCCCceEEEccCCCCccccC-CCccccCCCccEEEccCCCCCccCccc
Q psy3330         167 -FSSLKSLRILKLDNNQILDVP---NNVLSNLPHQSLHYLYLNENLIETVLD-NSFPFTLTNLHTLALSSNIISFINESS  241 (608)
Q Consensus       167 -~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~  241 (608)
                       +..+++|++|++++|+++.++   ...+..+  ++|+.|++++|.+++..+ ..+.. +++|+.|++++|.++.++. .
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~Ls~N~l~~ip~-~  271 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAAR--VQLQGLDLSHNSLRDAAGAPSCDW-PSQLNSLNLSFTGLKQVPK-G  271 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT--CCCSEEECTTSCCCSSCCCSCCCC-CTTCCEEECTTSCCSSCCS-S
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcC--CCCCEEECCCCcCCcccchhhhhh-cCCCCEEECCCCccChhhh-h
Confidence             267777777777777776432   2333444  447777777777777553 33333 6777777777777775543 3


Q ss_pred             ccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCcc
Q psy3330         242 FVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI  285 (608)
Q Consensus       242 ~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  285 (608)
                      +.  ++|++|++++|+++++|.  +..+++|+.|++++|++++.
T Consensus       272 ~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred             cc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence            32  677777777777777753  67777777777777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.9e-27  Score=239.71  Aligned_cols=231  Identities=23%  Similarity=0.232  Sum_probs=161.1

Q ss_pred             ccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330          53 VQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY  131 (608)
Q Consensus        53 l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  131 (608)
                      ++..+++.+.+...+. .+..+++|++|++++|+++.+++..|..+++|++|+|++|.++++++  |..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            3444455555554433 34456678888888888887777777778888888888887776654  77778888888888


Q ss_pred             CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330         132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET  211 (608)
Q Consensus       132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~  211 (608)
                      |.++++++     .++|++|++++|.+.++. +.   .+++|++|++++|+++.+++..+..+  ++|+.|++++|.+++
T Consensus        90 n~l~~l~~-----~~~L~~L~l~~n~l~~~~-~~---~~~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           90 NYVQELLV-----GPSIETLHAANNNISRVS-CS---RGQGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDT  158 (317)
T ss_dssp             SEEEEEEE-----CTTCCEEECCSSCCSEEE-EC---CCSSCEEEECCSSCCCSGGGBCTGGG--SSEEEEECTTSCCCE
T ss_pred             CccccccC-----CCCcCEEECCCCccCCcC-cc---ccCCCCEEECCCCCCCCccchhhhcc--CCCCEEECCCCCCCc
Confidence            87776642     367888888888877765 22   35677888888888877777666666  458888888888877


Q ss_pred             ccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhC
Q psy3330         212 VLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK  291 (608)
Q Consensus       212 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~  291 (608)
                      ..+..+...+++|++|++++|.++.+..  ...+++|++|++++|+++++++. +..+++|+.|++++|+++.++. .+.
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-~~~  234 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALR  234 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCC
T ss_pred             ccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-Hhh
Confidence            7666654337778888888888777633  23477888888888888877754 7777888888888888877644 355


Q ss_pred             CCCCCceee
Q psy3330         292 SLFSLKLVK  300 (608)
Q Consensus       292 ~l~~L~~L~  300 (608)
                      .+++|+.|+
T Consensus       235 ~l~~L~~L~  243 (317)
T 3o53_A          235 FSQNLEHFD  243 (317)
T ss_dssp             CCTTCCEEE
T ss_pred             cCCCCCEEE
Confidence            555554433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=5.7e-26  Score=229.72  Aligned_cols=228  Identities=16%  Similarity=0.144  Sum_probs=178.5

Q ss_pred             CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330          50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL  129 (608)
Q Consensus        50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  129 (608)
                      .++++.|+|++|.++.+|..+..+++|++|+|++|.++.+|. .|.++++|++|+|++|.++.++ ..|.++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCc-HHHhcCcCCCEEEC
Confidence            468999999999999999999999999999999999997764 7899999999999999999876 46899999999999


Q ss_pred             cCCcCCccChhhhC---------CCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCce
Q psy3330         130 SYNKISVINKTAFR---------DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH  200 (608)
Q Consensus       130 s~n~l~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~  200 (608)
                      ++|++.+..+..+.         ++++|++|++++|.++.+  |..+.++++|++|++++|++.++++. +..+  ++|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l--~~L~  232 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIRNSPLSALGPA-IHHL--PKLE  232 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCEEEEESSCCCCCCGG-GGGC--TTCC
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCEEEccCCCCCcCchh-hccC--CCCC
Confidence            99877665555443         478888888888888865  45688888888888888888877664 5566  4577


Q ss_pred             EEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCC
Q psy3330         201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN  280 (608)
Q Consensus       201 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N  280 (608)
                      .|++++|.+.+..+..+.. +++|+.|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.+++..+
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             EEECcCCcchhhhHHHhcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            7777777777777777765 777777777777776666666777777777777776665544456777777777777766


Q ss_pred             CCCcc
Q psy3330         281 NFSNI  285 (608)
Q Consensus       281 ~l~~~  285 (608)
                      .+..+
T Consensus       312 ~~~~l  316 (328)
T 4fcg_A          312 LQAQL  316 (328)
T ss_dssp             GSCC-
T ss_pred             HHHHH
Confidence            55443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.94  E-value=2e-26  Score=218.94  Aligned_cols=200  Identities=26%  Similarity=0.462  Sum_probs=156.7

Q ss_pred             cEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCC
Q psy3330         225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI  304 (608)
Q Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~  304 (608)
                      +.++++++.++.++.. +  .++++.|++++|+++++++..|..+++|+.|+|++|+++++.+.+|..+++|+.|++   
T Consensus        14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L---   87 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL---   87 (220)
T ss_dssp             TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC---
T ss_pred             CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC---
Confidence            5677777777776442 2  257788888888888877777777888888888888888777777777766655444   


Q ss_pred             CCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhh
Q psy3330         305 PNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAF  384 (608)
Q Consensus       305 ~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f  384 (608)
                                                                ++|+|+.++                         ...|
T Consensus        88 ------------------------------------------s~N~l~~l~-------------------------~~~f  100 (220)
T 2v9t_B           88 ------------------------------------------YGNKITELP-------------------------KSLF  100 (220)
T ss_dssp             ------------------------------------------CSSCCCCCC-------------------------TTTT
T ss_pred             ------------------------------------------CCCcCCccC-------------------------HhHc
Confidence                                                      455555444                         4556


Q ss_pred             cCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHh
Q psy3330         385 VDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQL  463 (608)
Q Consensus       385 ~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~  463 (608)
                      .++++|++|+|++|+ ++.++...|.++++|+.|+|++|+|+.+++..+ .+++|+.|++++|||.|||++.|+..|++.
T Consensus       101 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~  179 (220)
T 2v9t_B          101 EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT  179 (220)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHh
Confidence            677899999999997 888888889999999999999999999998765 689999999999999999999999999873


Q ss_pred             hhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCcc
Q psy3330         464 QVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESNT  539 (608)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~~  539 (608)
                      ..                                         .......|++|..++|+.+.+++.+++.|..+.
T Consensus       180 ~~-----------------------------------------~~~~~~~C~~P~~l~g~~l~~l~~~~~~c~~~~  214 (220)
T 2v9t_B          180 NP-----------------------------------------IETSGARCTSPRRLANKRIGQIKSKKFRCSAAA  214 (220)
T ss_dssp             CC-----------------------------------------CBCSCCBEEESGGGTTCBGGGSCGGGCCC----
T ss_pred             CC-----------------------------------------CCccCCCcCCchHHcCCchhhCCHHHCcCcccc
Confidence            20                                         112357899999999999999999999997643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.6e-27  Score=239.58  Aligned_cols=238  Identities=19%  Similarity=0.142  Sum_probs=173.5

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcc-ccc-------ccccccEEEccCCCCCCCChhhh--cC
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSH-NFE-------YQNKLLNLNISYNEISALSKDTF--KG  120 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~-~f~-------~l~~L~~L~Ls~n~i~~~~~~~~--~~  120 (608)
                      +++++|++++|.+ .+|..+...  |+.|++++|.++.+... .+.       ++++|++|+|++|.+++..+..+  ..
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            4678888888888 777655544  88888888888653221 222       57889999999998886544444  78


Q ss_pred             CCcCcEeeccCCcCCccChhhhCCC-----CCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC---Ccc-cc
Q psy3330         121 LKELKTLDLSYNKISVINKTAFRDT-----LHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV---PNN-VL  191 (608)
Q Consensus       121 l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~-~~  191 (608)
                      +++|++|++++|+++++ +..+..+     ++|++|++++|++.++. +..|+++++|++|++++|++.+.   +.. .+
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS-CEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC-TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch-HHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            88899999999988887 5666655     88899999999888886 67888888999999998886542   111 22


Q ss_pred             cCCCCCCceEEEccCCCCcccc---CCCccccCCCccEEEccCCCCCccCc-ccccCCCccCEEeccCCcCCCCChhhhh
Q psy3330         192 SNLPHQSLHYLYLNENLIETVL---DNSFPFTLTNLHTLALSSNIISFINE-SSFVTLRTLHSLDLSNNNLSAIPTKQLS  267 (608)
Q Consensus       192 ~~l~~~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~~  267 (608)
                      ..+  ++|++|++++|.++++.   ...+.. +++|+.|++++|.+++..+ ..+..+++|++|++++|+++.+|...+ 
T Consensus       198 ~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          198 LKF--PTLQVLALRNAGMETPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             TSC--TTCCEEECTTSCCCCHHHHHHHHHHT-TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred             ccC--CCCCEEECCCCcCcchHHHHHHHHhc-CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence            555  56888888888887432   223333 7888888888888887653 456667888888888888888875333 


Q ss_pred             CCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330         268 KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI  301 (608)
Q Consensus       268 ~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l  301 (608)
                        ++|+.|++++|++++++.  +..+++|+.|++
T Consensus       274 --~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L  303 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRNPS--PDELPQVGNLSL  303 (312)
T ss_dssp             --SEEEEEECCSSCCCSCCC--TTTSCEEEEEEC
T ss_pred             --CCceEEECCCCCCCCChh--HhhCCCCCEEec
Confidence              788888888888888733  666665554444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=1e-24  Score=211.92  Aligned_cols=171  Identities=25%  Similarity=0.434  Sum_probs=119.0

Q ss_pred             CccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeecc
Q psy3330         223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN  302 (608)
Q Consensus       223 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~  302 (608)
                      +++.|++++|.++++.+..|.++++|++|+|++|+++++++..|..+++|+.|++++|+++++++..|..+++|+.|++ 
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL-  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC-
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc-
Confidence            4555555555555555555555556666666666665555555555666666666666666555555555554443333 


Q ss_pred             CCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChh
Q psy3330         303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQR  382 (608)
Q Consensus       303 ~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~  382 (608)
                                                                  ++|++++++                         +.
T Consensus       115 --------------------------------------------~~N~l~~~~-------------------------~~  125 (251)
T 3m19_A          115 --------------------------------------------GGNQLKSLP-------------------------SG  125 (251)
T ss_dssp             --------------------------------------------CSSCCCCCC-------------------------TT
T ss_pred             --------------------------------------------CCCcCCCcC-------------------------hh
Confidence                                                        344444333                         23


Q ss_pred             hhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccc-cCChHHHHH
Q psy3330         383 AFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCD-CNLLWLWIL  460 (608)
Q Consensus       383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~Cd-C~~~~~~~~  460 (608)
                      .|.++++|++|+|++|+ ++.+|...|.++++|+.|+|++|+|+.+++..+ .+++|+.|++++|+|.|+ |.+.|+..|
T Consensus       126 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~  204 (251)
T 3m19_A          126 VFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW  204 (251)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred             HhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence            34556777888888887 888888889999999999999999999988655 689999999999999999 999999999


Q ss_pred             HHhh
Q psy3330         461 VQLQ  464 (608)
Q Consensus       461 ~~~~  464 (608)
                      ++..
T Consensus       205 ~~~~  208 (251)
T 3m19_A          205 IREN  208 (251)
T ss_dssp             HHHS
T ss_pred             HHhc
Confidence            9854

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.3e-26  Score=247.11  Aligned_cols=149  Identities=21%  Similarity=0.202  Sum_probs=86.3

Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL  178 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  178 (608)
                      +|++|+|++|.++.+++..|.++++|++|+|++|.+++..+  |..+++|++|++++|.+++++ +     .++      
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~-----~~~------  100 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-V-----GPS------  100 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-E-----CTT------
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-C-----CCC------
Confidence            45555555555555554455555555555555555544332  444445555555554444332 1     133      


Q ss_pred             cCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcC
Q psy3330         179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL  258 (608)
Q Consensus       179 ~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  258 (608)
                                          |+.|++++|.++++++..    +++|+.|++++|.++++.+..|..+++|+.|+|++|.+
T Consensus       101 --------------------L~~L~L~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (487)
T 3oja_A          101 --------------------IETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (487)
T ss_dssp             --------------------CCEEECCSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred             --------------------cCEEECcCCcCCCCCccc----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence                                444455555444443322    34566777777777766666677777777777777777


Q ss_pred             CCCChhhhh-CCCCCCEEeccCCCCCcc
Q psy3330         259 SAIPTKQLS-KLSALVNLDLSGNNFSNI  285 (608)
Q Consensus       259 ~~l~~~~~~-~l~~L~~L~Ls~N~l~~~  285 (608)
                      +++++..+. .+++|+.|+|++|.++++
T Consensus       157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcChHHHhhhCCcccEEecCCCccccc
Confidence            776555554 677888888888887766

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=2.1e-25  Score=216.84  Aligned_cols=188  Identities=24%  Similarity=0.408  Sum_probs=157.7

Q ss_pred             CCCCC--ceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccccc
Q psy3330          21 ICPSR--CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQ   97 (608)
Q Consensus        21 ~Cp~~--C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l   97 (608)
                      .||..  |.|......++|++.+++.+|..++++++.|+|++|.++.++. .+.++++|++|+|++|.++.+++..|.++
T Consensus         3 ~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   82 (251)
T 3m19_A            3 TCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL   82 (251)
T ss_dssp             -CHHHHSSEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             cCCCCCceEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence            58877  9997777899999999999999999999999999999998765 68888999999999999998888888888


Q ss_pred             ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330          98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK  177 (608)
Q Consensus        98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  177 (608)
                      ++|++|+|++|+++.+++..|.++++|++|+|++|+++.+++..|.++++|++|++++|.++.++ +..|..+++|++|+
T Consensus        83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~  161 (251)
T 3m19_A           83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLS  161 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred             CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEE
Confidence            99999999999998888888888888888888888888888878888888888888888888876 66788888888888


Q ss_pred             ccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330         178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET  211 (608)
Q Consensus       178 L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~  211 (608)
                      +++|+++.+++..+..+  ++|+.|++++|.+..
T Consensus       162 L~~N~l~~~~~~~~~~l--~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          162 LSTNQLQSVPHGAFDRL--GKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCSSCCSCCCTTTTTTC--TTCCEEECCSCCBCT
T ss_pred             CCCCcCCccCHHHHhCC--CCCCEEEeeCCceeC
Confidence            88888887777666666  446666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=5.7e-25  Score=220.56  Aligned_cols=290  Identities=22%  Similarity=0.304  Sum_probs=208.5

Q ss_pred             EEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC--hhhhCCCCCCcEEEccC
Q psy3330          78 SLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN--KTAFRDTLHLELLILSF  155 (608)
Q Consensus        78 ~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~  155 (608)
                      .++.++++++.+|....   ++|++|++++|+++.+++..|.++++|++|++++|.++.+.  +..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCSSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            45556666666655322   46777777777777777666777777777777777776543  34555677777777777


Q ss_pred             CCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCC
Q psy3330         156 NNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIIS  235 (608)
Q Consensus       156 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  235 (608)
                      |.+..+  +..+..+++|++|++++|++..++.                         ...+.. +++|+.|++++|.+.
T Consensus        88 n~i~~l--~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~~-l~~L~~L~l~~n~l~  139 (306)
T 2z66_A           88 NGVITM--SSNFLGLEQLEHLDFQHSNLKQMSE-------------------------FSVFLS-LRNLIYLDISHTHTR  139 (306)
T ss_dssp             CSEEEE--EEEEETCTTCCEEECTTSEEESSTT-------------------------TTTTTT-CTTCCEEECTTSCCE
T ss_pred             CccccC--hhhcCCCCCCCEEECCCCccccccc-------------------------chhhhh-ccCCCEEECCCCcCC
Confidence            777665  3346666666666666655544332                         034444 788999999999998


Q ss_pred             ccCcccccCCCccCEEeccCCcCCC-CChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCccc
Q psy3330         236 FINESSFVTLRTLHSLDLSNNNLSA-IPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPL  314 (608)
Q Consensus       236 ~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~  314 (608)
                      ...+..|.++++|++|++++|.+++ ..+..+..+++|+.|++++|.++++.+..|..+++|+.|+++++..        
T Consensus       140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--------  211 (306)
T 2z66_A          140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--------  211 (306)
T ss_dssp             ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--------
T ss_pred             ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc--------
Confidence            8888889999999999999999987 4446899999999999999999999999999999999999975431        


Q ss_pred             ccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceee
Q psy3330         315 SLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVI  394 (608)
Q Consensus       315 ~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~  394 (608)
                      .+..+..+.             ...++++|++++|++++..+..+..                                 
T Consensus       212 ~~~~~~~~~-------------~l~~L~~L~L~~N~l~~~~~~~~~~---------------------------------  245 (306)
T 2z66_A          212 FSLDTFPYK-------------CLNSLQVLDYSLNHIMTSKKQELQH---------------------------------  245 (306)
T ss_dssp             SBCCSGGGT-------------TCTTCCEEECTTSCCCBCSSSSCCC---------------------------------
T ss_pred             CccChhhcc-------------CcccCCEeECCCCCCcccCHHHHHh---------------------------------
Confidence            111111110             1225689999999998876533210                                 


Q ss_pred             cccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccc
Q psy3330         395 INENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTV  474 (608)
Q Consensus       395 Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~  474 (608)
                            .   |                              ++|++|++++|+|.|+|++.||..|++...         
T Consensus       246 ------~---~------------------------------~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~---------  277 (306)
T 2z66_A          246 ------F---P------------------------------SSLAFLNLTQNDFACTCEHQSFLQWIKDQR---------  277 (306)
T ss_dssp             ------C---C------------------------------TTCCEEECTTCCEECSGGGHHHHHHHHHTG---------
T ss_pred             ------h---h------------------------------ccCCEEEccCCCeecccChHHHHHHHHhhh---------
Confidence                  0   0                              256778999999999999999999998431         


Q ss_pred             eeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccC
Q psy3330         475 AYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVP  529 (608)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~  529 (608)
                                                   ......+...|..|++++|.++.++.
T Consensus       278 -----------------------------~~~~~~~~~~C~~p~~~~g~~~~~~~  303 (306)
T 2z66_A          278 -----------------------------QLLVEVERMECATPSDKQGMPVLSLN  303 (306)
T ss_dssp             -----------------------------GGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred             -----------------------------hhhccccccccCCchhhCCceeeeec
Confidence                                         12233467899999999999998774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.6e-25  Score=237.03  Aligned_cols=212  Identities=24%  Similarity=0.264  Sum_probs=178.5

Q ss_pred             CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330          73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI  152 (608)
Q Consensus        73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  152 (608)
                      +++|++|+|++|.++.+++..|..+++|++|+|++|.++++++  |..+++|++|+|++|.++++++     .++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3489999999999999988899999999999999999987765  8899999999999999887754     37899999


Q ss_pred             ccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCC
Q psy3330         153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN  232 (608)
Q Consensus       153 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  232 (608)
                      +++|.+.++. +.   .+++|+.|++++|.++++++..+..+  ++|+.|++++|.+++..+..+...+++|+.|++++|
T Consensus       106 L~~N~l~~~~-~~---~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          106 AANNNISRVS-CS---RGQGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CCSSCCCCEE-EC---CCSSCEEEECCSSCCCSGGGBCGGGG--SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CcCCcCCCCC-cc---ccCCCCEEECCCCCCCCCCchhhcCC--CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            9999998876 33   45789999999999999888778777  569999999999999887777644899999999999


Q ss_pred             CCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330         233 IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI  301 (608)
Q Consensus       233 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l  301 (608)
                      .++++++  +..+++|+.|+|++|.++++|+. +..+++|+.|++++|.++++++. +..+++|+.|++
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l  244 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDL  244 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEEC
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEc
Confidence            9998743  34589999999999999999875 88899999999999999987654 666666654444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.92  E-value=9.6e-25  Score=207.39  Aligned_cols=199  Identities=24%  Similarity=0.428  Sum_probs=141.2

Q ss_pred             cEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC-hhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccC
Q psy3330         225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP-TKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINL  303 (608)
Q Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~  303 (608)
                      +.+++++|.++.++. .+  ...+++|++++|++++++ ...|..+++|+.|++++|.++++++.+|..+++|+.|++  
T Consensus        14 ~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L--   88 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL--   88 (220)
T ss_dssp             TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--
T ss_pred             CEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC--
Confidence            355556665555433 22  234456666666666653 244666666666677666666666666666655544333  


Q ss_pred             CCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhh
Q psy3330         304 IPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRA  383 (608)
Q Consensus       304 ~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~  383 (608)
                                                                 ++|++++++                         +..
T Consensus        89 -------------------------------------------s~N~l~~~~-------------------------~~~  100 (220)
T 2v70_A           89 -------------------------------------------TSNRLENVQ-------------------------HKM  100 (220)
T ss_dssp             -------------------------------------------CSSCCCCCC-------------------------GGG
T ss_pred             -------------------------------------------CCCccCccC-------------------------HhH
Confidence                                                       444444444                         344


Q ss_pred             hcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCC-CCCCCCCEEEccCCccccccCChHHHHHHH
Q psy3330         384 FVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASH-FPLERISFLDLSDNPLHCDCNLLWLWILVQ  462 (608)
Q Consensus       384 f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~  462 (608)
                      |.++++|++|+|++|+ +..+++..|.++++|+.|+|++|+|+.+++.. ..+++|+.|++++|||.|+|++.|+..|++
T Consensus       101 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~  179 (220)
T 2v70_A          101 FKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR  179 (220)
T ss_dssp             GTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred             hcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence            5556778888888887 77787777999999999999999999986554 479999999999999999999999999987


Q ss_pred             hhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330         463 LQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN  538 (608)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~  538 (608)
                      ...                                         .......|..|..++|.++.+++.+++.|...
T Consensus       180 ~~~-----------------------------------------~~~~~~~C~~P~~l~g~~l~~l~~~~~~~~~~  214 (220)
T 2v70_A          180 KKR-----------------------------------------IVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDA  214 (220)
T ss_dssp             HSC-----------------------------------------CBCCCCEEEESGGGTTEEGGGSCGGGCCCCC-
T ss_pred             hcC-----------------------------------------ccccCCccCCChHHCCCChhhCCHHHcccccc
Confidence            321                                         01235689999999999999999998888654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=5.4e-24  Score=211.14  Aligned_cols=202  Identities=26%  Similarity=0.344  Sum_probs=163.4

Q ss_pred             Cceec--CCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCccccccccccc
Q psy3330          25 RCQCF--DQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLL  101 (608)
Q Consensus        25 ~C~c~--~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~  101 (608)
                      .|.|.  .....++|++.+++.+|..++++++.|+|++|.++.++ ..+..+++|++|++++|.++.++..  ..+++|+
T Consensus         3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             cccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            34443  45678999999999999999999999999999999876 4788999999999999999988764  7889999


Q ss_pred             EEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCC
Q psy3330         102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN  181 (608)
Q Consensus       102 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  181 (608)
                      +|++++|+++.++. .+.++++|++|++++|+++.+++..|.++++|++|++++|+++.++ +..|..+++|+.|++++|
T Consensus        81 ~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCC
Confidence            99999999998874 6788889999999999999888888888889999999999888887 777888888888888888


Q ss_pred             CCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCC
Q psy3330         182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII  234 (608)
Q Consensus       182 ~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  234 (608)
                      +++.+++..+..+  ++|+.|++++|.++.++...+.  ..+|+.+++++|.+
T Consensus       159 ~l~~l~~~~~~~l--~~L~~L~L~~N~l~~ip~~~~~--~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          159 NLTELPAGLLNGL--ENLDTLLLQENSLYTIPKGFFG--SHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCSCCCTTTTTTC--TTCCEEECCSSCCCCCCTTTTT--TCCCSEEECCSCCB
T ss_pred             cCCccCHHHhcCc--CCCCEEECCCCcCCccChhhcc--cccCCeEEeCCCCc
Confidence            8888877766666  4477777777777665544433  44566666665554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=2.3e-24  Score=217.84  Aligned_cols=222  Identities=18%  Similarity=0.155  Sum_probs=195.8

Q ss_pred             cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330          72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL  151 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  151 (608)
                      ..++++.|+|++|+++.+++. +..+++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+ +..+.++++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRAL-PASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEE
Confidence            457899999999999999874 667999999999999999776 5789999999999999999976 5678999999999


Q ss_pred             EccCCCCCccCchhhh---------cCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCC
Q psy3330         152 ILSFNNITYFEDSEIF---------SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLT  222 (608)
Q Consensus       152 ~L~~n~l~~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~  222 (608)
                      ++++|++.+.. |..+         .++++|++|++++|+++.+|.. +..+  ++|++|++++|.++++++ .+.. ++
T Consensus       156 ~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l--~~L~~L~L~~N~l~~l~~-~l~~-l~  229 (328)
T 4fcg_A          156 SIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANL--QNLKSLKIRNSPLSALGP-AIHH-LP  229 (328)
T ss_dssp             EEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGC--TTCCEEEEESSCCCCCCG-GGGG-CT
T ss_pred             ECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCC--CCCCEEEccCCCCCcCch-hhcc-CC
Confidence            99998766554 4444         4599999999999999988764 7777  569999999999998765 5766 99


Q ss_pred             CccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeecc
Q psy3330         223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN  302 (608)
Q Consensus       223 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~  302 (608)
                      +|+.|++++|.+.+..+..|.++++|++|++++|++.+..+..+..+++|+.|+|++|++.+..|..+..+++|+.+.+.
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            99999999999998889999999999999999998877666789999999999999999999889999999999999884

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=1.8e-24  Score=208.56  Aligned_cols=209  Identities=20%  Similarity=0.279  Sum_probs=161.3

Q ss_pred             CCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCC-CCCCChhhhcCCCcCcEeeccC-CcCCccCh
Q psy3330          62 RISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE-ISALSKDTFKGLKELKTLDLSY-NKISVINK  139 (608)
Q Consensus        62 ~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~  139 (608)
                      .++.+|. +  .++|++|++++|+++.+++..|.++++|++|++++|+ ++.+++.+|.++++|++|++++ |+++.+++
T Consensus        22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            3667776 3  3378888888888888888788888888888888886 8888777788888888888887 77877777


Q ss_pred             hhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCC-CCccccCCCcc
Q psy3330         140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNEN-LIETVLDNSFP  218 (608)
Q Consensus       140 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~~  218 (608)
                      ..|.++++|++|++++|.+++++  . |..+++|+                       .++.|++++| .++++++..|.
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp--~-~~~l~~L~-----------------------~L~~L~l~~N~~l~~i~~~~~~  152 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFP--D-LTKVYSTD-----------------------IFFILEITDNPYMTSIPVNAFQ  152 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCC--C-CTTCCBCC-----------------------SEEEEEEESCTTCCEECTTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCcccc--c-cccccccc-----------------------cccEEECCCCcchhhcCccccc
Confidence            77777777777777777777653  2 44444443                       1335666666 66666666666


Q ss_pred             ccCCCcc-EEEccCCCCCccCcccccCCCccCEEeccCCc-CCCCChhhhhCC-CCCCEEeccCCCCCccChhhhCCCCC
Q psy3330         219 FTLTNLH-TLALSSNIISFINESSFVTLRTLHSLDLSNNN-LSAIPTKQLSKL-SALVNLDLSGNNFSNIDSVAFKSLFS  295 (608)
Q Consensus       219 ~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~f~~l~~  295 (608)
                      . +++|+ .|++++|.++.+++..|.. ++|++|++++|+ ++.+++..|.++ ++|+.|++++|+++++++.   .+++
T Consensus       153 ~-l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~  227 (239)
T 2xwt_C          153 G-LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEH  227 (239)
T ss_dssp             T-TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTT
T ss_pred             c-hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hhcc
Confidence            5 78888 8999999888887777777 899999999995 999998999999 9999999999999998876   4667


Q ss_pred             CceeeccCC
Q psy3330         296 LKLVKINLI  304 (608)
Q Consensus       296 L~~L~l~~~  304 (608)
                      |+.|+++.+
T Consensus       228 L~~L~l~~~  236 (239)
T 2xwt_C          228 LKELIARNT  236 (239)
T ss_dssp             CSEEECTTC
T ss_pred             CceeeccCc
Confidence            888888643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=7.9e-24  Score=223.41  Aligned_cols=224  Identities=23%  Similarity=0.360  Sum_probs=180.8

Q ss_pred             CceEEEecCCCCccccCc-c--CccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccccccEEEcc
Q psy3330          31 QKLEASCTDAGLEVVPIQ-L--NPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS  106 (608)
Q Consensus        31 ~~~~v~C~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls  106 (608)
                      ....++.++..++.++.. +  .+++++|+|++|.++.++ ..|.++++|++|+|++|+++.+++..|..+++|++|+|+
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            346788888888888743 2  368999999999999987 478999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhhhcCCCcCcEeeccC-CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC
Q psy3330         107 YNEISALSKDTFKGLKELKTLDLSY-NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD  185 (608)
Q Consensus       107 ~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  185 (608)
                      +|.++.+++..|.++++|++|++++ +.+..+++..|.++++|++|++++|.++.++   .+..+++             
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~-------------  208 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP---NLTPLIK-------------  208 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC---CCTTCSS-------------
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc---ccCCCcc-------------
Confidence            9999999988899999999999988 5566676667777777777777777776653   2444444             


Q ss_pred             CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330         186 VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ  265 (608)
Q Consensus       186 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  265 (608)
                                   |+.|++++|.++++.+..|.. +++|+.|++++|.++.+.+..|.++++|+.|+|++|+++.+++..
T Consensus       209 -------------L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  274 (440)
T 3zyj_A          209 -------------LDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL  274 (440)
T ss_dssp             -------------CCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             -------------cCEEECCCCccCccChhhhcc-CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence                         555555555555555555655 777888888888888887788888888888888888888888888


Q ss_pred             hhCCCCCCEEeccCCCCCc
Q psy3330         266 LSKLSALVNLDLSGNNFSN  284 (608)
Q Consensus       266 ~~~l~~L~~L~Ls~N~l~~  284 (608)
                      |..+++|+.|+|++|++..
T Consensus       275 ~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          275 FTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TSSCTTCCEEECCSSCEEC
T ss_pred             hccccCCCEEEcCCCCccC
Confidence            8888889999999888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.6e-24  Score=204.25  Aligned_cols=186  Identities=26%  Similarity=0.360  Sum_probs=155.9

Q ss_pred             CCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccc
Q psy3330          22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKL  100 (608)
Q Consensus        22 Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L  100 (608)
                      ||..|.|.  +..++|++.+++++|..+++++++|++++|.++.++. .+..+++|++|++++|+++.+++..|..+++|
T Consensus         1 Cp~~C~C~--~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (208)
T 2o6s_A            1 CPSRCSCS--GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL   78 (208)
T ss_dssp             CCTTCEEE--TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCCCEEC--CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence            99999995  5689999999999999999999999999999998876 56889999999999999999888888889999


Q ss_pred             cEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC
Q psy3330         101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN  180 (608)
Q Consensus       101 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  180 (608)
                      ++|++++|+++.+++..|.++++|++|++++|+++.+++..|..+++|++|++++|.+++++ +..|..+++|++|++++
T Consensus        79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A           79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecC
Confidence            99999999999888888888999999999999998888888888888999999888888876 66688888888888888


Q ss_pred             CCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccc
Q psy3330         181 NQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF  219 (608)
Q Consensus       181 n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~  219 (608)
                      |.+..       .+  +.++.|++..|.+++..+..+..
T Consensus       158 N~~~~-------~~--~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          158 NPWDC-------TC--PGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             CCBCC-------CT--TTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             CCeec-------CC--CCHHHHHHHHHhCCceeeccCcc
Confidence            86542       12  34667777777777666655543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.91  E-value=3.3e-24  Score=203.64  Aligned_cols=164  Identities=32%  Similarity=0.490  Sum_probs=148.2

Q ss_pred             cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCccccccc
Q psy3330          19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQ   97 (608)
Q Consensus        19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l   97 (608)
                      +..||..|.|..  ..++|++.+++++|..+++++++|++++|.|+.++. .|..+++|++|+|++|+++.+.+..|.++
T Consensus         2 ~~~CP~~C~C~~--~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l   79 (220)
T 2v9t_B            2 SLHCPAACTCSN--NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL   79 (220)
T ss_dssp             CCCSCTTSEEET--TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCCCCCCEECC--CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence            468999999964  589999999999999999999999999999999876 78899999999999999999988899999


Q ss_pred             ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEE
Q psy3330          98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILK  177 (608)
Q Consensus        98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  177 (608)
                      ++|++|+|++|.|+.+++..|.++++|++|+|++|+++.+++..|.++++|++|+|++|.++.+. +..|..+++|+.|+
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~  158 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMH  158 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEE
Confidence            99999999999999999888899999999999999999998888999999999999999999887 67788888888888


Q ss_pred             ccCCCCCC
Q psy3330         178 LDNNQILD  185 (608)
Q Consensus       178 L~~n~l~~  185 (608)
                      +++|.+..
T Consensus       159 L~~N~~~c  166 (220)
T 2v9t_B          159 LAQNPFIC  166 (220)
T ss_dssp             CCSSCEEC
T ss_pred             eCCCCcCC
Confidence            88887653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=1e-23  Score=223.26  Aligned_cols=224  Identities=26%  Similarity=0.379  Sum_probs=179.4

Q ss_pred             CceEEEecCCCCccccCc-c--CccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccccccEEEcc
Q psy3330          31 QKLEASCTDAGLEVVPIQ-L--NPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNIS  106 (608)
Q Consensus        31 ~~~~v~C~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls  106 (608)
                      ....++.++..++.++.. +  .+++++|+|++|.++.++ ..|.++++|++|+|++|.++.+++..|.++++|++|+|+
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            456788888888888543 3  368999999999999987 588999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhhhcCCCcCcEeeccC-CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC
Q psy3330         107 YNEISALSKDTFKGLKELKTLDLSY-NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD  185 (608)
Q Consensus       107 ~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  185 (608)
                      +|.++.+++..|.++++|++|++++ |.+..+++..|.++++|++|++++|.++.++   .+..+++|++|++++|.+.+
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---cccccccccEEECcCCcCcc
Confidence            9999999999999999999999998 5677777777888888888888888877653   24555555555555555544


Q ss_pred             CCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhh
Q psy3330         186 VPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQ  265 (608)
Q Consensus       186 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  265 (608)
                                                +.+..|.. +++|+.|++++|.++.+.+..|.++++|+.|+|++|+++++++..
T Consensus       233 --------------------------~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          233 --------------------------IRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             --------------------------ECGGGGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             --------------------------cCcccccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence                                      44444554 666777777777777777777777788888888888888888777


Q ss_pred             hhCCCCCCEEeccCCCCCc
Q psy3330         266 LSKLSALVNLDLSGNNFSN  284 (608)
Q Consensus       266 ~~~l~~L~~L~Ls~N~l~~  284 (608)
                      |..+++|+.|+|++|++..
T Consensus       286 ~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             STTCTTCCEEECCSSCEEC
T ss_pred             hccccCCCEEEccCCCcCC
Confidence            7888888888888887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.91  E-value=2.3e-24  Score=220.26  Aligned_cols=238  Identities=21%  Similarity=0.292  Sum_probs=202.8

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCC-CCChhhhcCCCcCcE-eeccC
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEIS-ALSKDTFKGLKELKT-LDLSY  131 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~-L~Ls~  131 (608)
                      ++++.++++++.+|..+  .+++++|+|++|+|+.|++++|+++++|++|+|++|++. .+++++|.+++++++ +.+..
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            45788999999999876  468999999999999999999999999999999999985 577788999999776 66778


Q ss_pred             CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC-CCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330         132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN-NQILDVPNNVLSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~  210 (608)
                      |+++.+++..|.++++|++|++++|++..++ +..+....++..+++.+ +++..++...|..+. ..++.|++++|.++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQ  167 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB-SSCEEEECCSSCCC
T ss_pred             CcccccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhccccccccccccchhhcc-hhhhhhcccccccc
Confidence            9999999999999999999999999999987 66677778888999865 688888888887765 56899999999999


Q ss_pred             cccCCCccccCCCccEEEcc-CCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccC-CCCCccChh
Q psy3330         211 TVLDNSFPFTLTNLHTLALS-SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG-NNFSNIDSV  288 (608)
Q Consensus       211 ~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~  288 (608)
                      .+++..|.  ..+++.+++. +|.++.+++..|.++++|++|++++|+++.+|+..+.   +|+.|.+.+ +.++.+++ 
T Consensus       168 ~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-  241 (350)
T 4ay9_X          168 EIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-  241 (350)
T ss_dssp             EECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-
T ss_pred             CCChhhcc--ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-
Confidence            99888886  4689999997 4789999888999999999999999999999976655   555555544 44666653 


Q ss_pred             hhCCCCCCceeecc
Q psy3330         289 AFKSLFSLKLVKIN  302 (608)
Q Consensus       289 ~f~~l~~L~~L~l~  302 (608)
                       +..+++|+.+++.
T Consensus       242 -l~~l~~L~~l~l~  254 (350)
T 4ay9_X          242 -LEKLVALMEASLT  254 (350)
T ss_dssp             -TTTCCSCCEEECS
T ss_pred             -chhCcChhhCcCC
Confidence             7788999998884

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.91  E-value=1.9e-24  Score=221.78  Aligned_cols=193  Identities=31%  Similarity=0.433  Sum_probs=164.1

Q ss_pred             cccccCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccc-cCCCccEEEeeCCCCcccCcc
Q psy3330          15 TKLNKAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLS-FYIELRSLDLSVNKINVLGSH   92 (608)
Q Consensus        15 ~~~~~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~-~~~~L~~L~Ls~n~l~~i~~~   92 (608)
                      +......||..|.|..  ..++|++.+++.+|..+++.++.|+|++|.|+.++. .+. ++++|++|+|++|+|+.+++.
T Consensus         5 ~~~~~~~Cp~~C~C~~--~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~   82 (361)
T 2xot_A            5 SGRSVVSCPANCLCAS--NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE   82 (361)
T ss_dssp             --CCCTTCCTTCEEET--TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT
T ss_pred             cCCcCCCCCCCCEECC--CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh
Confidence            3445678999999974  589999999999999999999999999999999876 455 899999999999999999999


Q ss_pred             cccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhh---cC
Q psy3330          93 NFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIF---SS  169 (608)
Q Consensus        93 ~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~  169 (608)
                      .|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+.+..|.++++|+.|+|++|.++.++ +..|   ..
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~  161 (361)
T 2xot_A           83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNK  161 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----
T ss_pred             hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCccc
Confidence            9999999999999999999999888999999999999999999998899999999999999999999987 6666   56


Q ss_pred             CCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330         170 LKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       170 l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~  210 (608)
                      +++|+.|+|++|+++.++...+..++...++.|++.+|.+.
T Consensus       162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            88899999999988888876666653211356677776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=199.17  Aligned_cols=164  Identities=26%  Similarity=0.416  Sum_probs=149.1

Q ss_pred             cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc--ccccCCCccEEEeeCCCCcccCcccccc
Q psy3330          19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY--TLSFYIELRSLDLSVNKINVLGSHNFEY   96 (608)
Q Consensus        19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~--~~~~~~~L~~L~Ls~n~l~~i~~~~f~~   96 (608)
                      ...||..|.|..  ..++|++..++.+|..+++.+++|+|++|.++.+++  .+..+++|++|+|++|.|+.+++..|.+
T Consensus         2 ~~~CP~~C~C~~--~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~   79 (220)
T 2v70_A            2 SLACPEKCRCEG--TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG   79 (220)
T ss_dssp             --CCCTTCEEET--TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCCCCCCCEECC--CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC
Confidence            467999999964  489999999999999999999999999999999853  5889999999999999999999999999


Q ss_pred             cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330          97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL  176 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  176 (608)
                      +++|++|+|++|.++.+++..|.++++|++|+|++|+++++.+..|.++++|++|+|++|.++++. +..|..+++|+.|
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L  158 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTL  158 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEE
Confidence            999999999999999999989999999999999999999998899999999999999999999987 7889999999999


Q ss_pred             EccCCCCCC
Q psy3330         177 KLDNNQILD  185 (608)
Q Consensus       177 ~L~~n~l~~  185 (608)
                      ++++|.+..
T Consensus       159 ~L~~N~l~c  167 (220)
T 2v70_A          159 NLLANPFNC  167 (220)
T ss_dssp             ECCSCCEEC
T ss_pred             EecCcCCcC
Confidence            999988764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=3e-24  Score=211.28  Aligned_cols=180  Identities=25%  Similarity=0.367  Sum_probs=93.9

Q ss_pred             cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330          72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL  151 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  151 (608)
                      .+++|+.|++++|.++.++  .+..+++|++|++++|.++.++  .+..+++|++|++++|.++++++..|.++++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            3444555555555544433  2444455555555555544432  34444555555555555544444444444445555


Q ss_pred             EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccC
Q psy3330         152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS  231 (608)
Q Consensus       152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  231 (608)
                      ++++|.++++. +..|..+++                          |++|++++|.++++++..|.. +++|+.|++++
T Consensus       115 ~L~~n~l~~~~-~~~~~~l~~--------------------------L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~  166 (272)
T 3rfs_A          115 VLVENQLQSLP-DGVFDKLTN--------------------------LTYLNLAHNQLQSLPKGVFDK-LTNLTELDLSY  166 (272)
T ss_dssp             ECTTSCCCCCC-TTTTTTCTT--------------------------CCEEECCSSCCCCCCTTTTTT-CTTCCEEECCS
T ss_pred             ECCCCcCCccC-HHHhccCCC--------------------------CCEEECCCCccCccCHHHhcc-CccCCEEECCC
Confidence            55544444443 333444444                          455555555554444444444 55566666666


Q ss_pred             CCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCC
Q psy3330         232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFS  283 (608)
Q Consensus       232 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~  283 (608)
                      |.++++.+..|.++++|++|++++|+++++++..+..+++|+.|++++|++.
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            6655555555555666666666666666666555566666666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.90  E-value=6.9e-24  Score=217.54  Aligned_cols=79  Identities=30%  Similarity=0.461  Sum_probs=58.5

Q ss_pred             hhcCCcccceeecccCccccccCcccC---CCCCCCCEEEcCCCcccccCCCCC-CCCC--CCEEEccCCccccccCChH
Q psy3330         383 AFVDNIQLETVIINENMNLKQLPSKLF---QGNTNLKSVSLKGNSLSHLEASHF-PLER--ISFLDLSDNPLHCDCNLLW  456 (608)
Q Consensus       383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f---~~l~~L~~L~L~~N~l~~l~~~~~-~l~~--L~~L~L~~N~~~CdC~~~~  456 (608)
                      .|.++++|++|+|++|+ +..+|..+|   ..+++|+.|+|++|+|+.+|...+ .++.  ++.|+|++|||.|||++.|
T Consensus       131 ~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~  209 (361)
T 2xot_A          131 AFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQ  209 (361)
T ss_dssp             TTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred             HhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHH
Confidence            34445666666777776 777777766   568889999999999998886543 3554  4789999999999999988


Q ss_pred             H-HHHHH
Q psy3330         457 L-WILVQ  462 (608)
Q Consensus       457 ~-~~~~~  462 (608)
                      + ..|..
T Consensus       210 ~~~~~~~  216 (361)
T 2xot_A          210 LFSHWQY  216 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6 56765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.5e-23  Score=202.88  Aligned_cols=206  Identities=24%  Similarity=0.336  Sum_probs=159.9

Q ss_pred             CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330          50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL  129 (608)
Q Consensus        50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  129 (608)
                      .++++.|++++|.++.++ .+..+++|++|++++|.++.++  .+..+++|++|++++|.++.+++..|.++++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            368999999999998876 4788999999999999999874  6889999999999999999999988999999999999


Q ss_pred             cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC
Q psy3330         130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI  209 (608)
Q Consensus       130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l  209 (608)
                      ++|+++++++..|.++++|++|++++|.+++++ +..|..+++|++|++++|+++.+++..+..+  ++|+.|++++|.+
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~N~l  193 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQSLPEGVFDKL--TQLKDLRLYQNQL  193 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCccCHHHhcCC--ccCCEEECCCCcC
Confidence            999999999989999999999999999999887 7778888999999998888887776655554  3355555555555


Q ss_pred             ccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhh
Q psy3330         210 ETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA  289 (608)
Q Consensus       210 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  289 (608)
                      +++++                         ..|..+++|+.|++++|.+..       .+++|+.|+++.|.+++..|..
T Consensus       194 ~~~~~-------------------------~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          194 KSVPD-------------------------GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             SCCCT-------------------------TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             CccCH-------------------------HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence            54444                         444445555555555554432       2345556666666666655554


Q ss_pred             hCCC
Q psy3330         290 FKSL  293 (608)
Q Consensus       290 f~~l  293 (608)
                      ++.+
T Consensus       242 ~~~~  245 (272)
T 3rfs_A          242 AGSV  245 (272)
T ss_dssp             TSCB
T ss_pred             cccc
Confidence            4443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.89  E-value=6.8e-23  Score=190.18  Aligned_cols=174  Identities=29%  Similarity=0.515  Sum_probs=137.7

Q ss_pred             CEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccc
Q psy3330         249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIP  328 (608)
Q Consensus       249 ~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~  328 (608)
                      +.+++++|+++.+|...   .++|+.|++++|.++.++ ..|..+++|+.|                             
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L-----------------------------   59 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLI-----------------------------   59 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEE-----------------------------
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEE-----------------------------
Confidence            56788888888887532   257888888888887665 456666666544                             


Q ss_pred             cccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCccc
Q psy3330         329 LAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKL  408 (608)
Q Consensus       329 ~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~  408 (608)
                                      ++++|+|++++                         +.+|.++++|++|+|++|+ ++.++..+
T Consensus        60 ----------------~Ls~N~i~~i~-------------------------~~~f~~l~~L~~L~Ls~N~-l~~i~~~~   97 (193)
T 2wfh_A           60 ----------------DLSNNRISTLS-------------------------NQSFSNMTQLLTLILSYNR-LRCIPPRT   97 (193)
T ss_dssp             ----------------ECCSSCCCCCC-------------------------TTTTTTCTTCCEEECCSSC-CCBCCTTT
T ss_pred             ----------------ECCCCcCCEeC-------------------------HhHccCCCCCCEEECCCCc-cCEeCHHH
Confidence                            44555555544                         4556777899999999997 88999888


Q ss_pred             CCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCC
Q psy3330         409 FQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPG  487 (608)
Q Consensus       409 f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (608)
                      |.++++|+.|+|++|+|+.+|+..+ .+++|+.|++++|||.|||++.||..|++...                      
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~----------------------  155 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEY----------------------  155 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSS----------------------
T ss_pred             hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhcc----------------------
Confidence            9999999999999999999999866 68999999999999999999999999987421                      


Q ss_pred             CccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330         488 TTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN  538 (608)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~  538 (608)
                                         .......|++|+.++|+.+.+++.+.+.|...
T Consensus       156 -------------------~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~~~  187 (193)
T 2wfh_A          156 -------------------KEPGIARCAGPGEMADKLLLTTPSKKFTCAAA  187 (193)
T ss_dssp             -------------------CCCSCCBEEESGGGTTCBTTTSCGGGCCC---
T ss_pred             -------------------CCCCCcCcCCchHHCCCCcccCChHHeeehhh
Confidence                               11235689999999999999999988877653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=1.9e-24  Score=237.37  Aligned_cols=246  Identities=16%  Similarity=0.123  Sum_probs=145.4

Q ss_pred             ccccEEEeccCCC----ccccc------------ccccCCCccEEEeeCCCCcccCcccccc-cc-cccEEEccCCC-CC
Q psy3330          51 PEVQTIILRENRI----SNVHY------------TLSFYIELRSLDLSVNKINVLGSHNFEY-QN-KLLNLNISYNE-IS  111 (608)
Q Consensus        51 ~~l~~L~L~~n~i----~~l~~------------~~~~~~~L~~L~Ls~n~l~~i~~~~f~~-l~-~L~~L~Ls~n~-i~  111 (608)
                      +++++|+++++..    ..+|.            ....+++|++|+|++|.++......+.. ++ +|++|+|++|. ++
T Consensus        73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~  152 (592)
T 3ogk_B           73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT  152 (592)
T ss_dssp             TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred             CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence            5588888876432    11221            1236888888888888777655445544 33 48888888776 21


Q ss_pred             CC-ChhhhcCCCcCcEeeccCCcCCccC----hhhhCCCCCCcEEEccCCCCCccC---chhhhcCCCCccEEEccCCCC
Q psy3330         112 AL-SKDTFKGLKELKTLDLSYNKISVIN----KTAFRDTLHLELLILSFNNITYFE---DSEIFSSLKSLRILKLDNNQI  183 (608)
Q Consensus       112 ~~-~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l  183 (608)
                      .. .+....++++|++|+|++|.+++..    +..+..+++|+.|++++|.+..+.   .+..+.++++|++|++++|.+
T Consensus       153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            10 0112346788888888888776542    224456788888888888876332   134456778888888888877


Q ss_pred             CCCCcccccCCCCCCceEEEccCCCCc---cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCC
Q psy3330         184 LDVPNNVLSNLPHQSLHYLYLNENLIE---TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA  260 (608)
Q Consensus       184 ~~~~~~~~~~l~~~~L~~L~L~~n~l~---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  260 (608)
                      .+++ ..+..+  ++|+.|+++.....   ......+.. +++|+.+.++++....+ +..+..+++|++|++++|.++.
T Consensus       233 ~~l~-~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~  307 (592)
T 3ogk_B          233 LELV-GFFKAA--ANLEEFCGGSLNEDIGMPEKYMNLVF-PRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLET  307 (592)
T ss_dssp             GGGH-HHHHHC--TTCCEEEECBCCCCTTCTTSSSCCCC-CTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCH
T ss_pred             HHHH-HHHhhh--hHHHhhcccccccccchHHHHHHhhc-cccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCH
Confidence            7655 345555  45777777653221   111223333 56677777766543333 3455566677777777776543


Q ss_pred             CCh-hhhhCCCCCCEEeccCCCCCccC-hhhhCCCCCCceeecc
Q psy3330         261 IPT-KQLSKLSALVNLDLSGNNFSNID-SVAFKSLFSLKLVKIN  302 (608)
Q Consensus       261 l~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~f~~l~~L~~L~l~  302 (608)
                      ... ..+..+++|+.|+++ +.+.... +..+..+++|+.|+++
T Consensus       308 ~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          308 EDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             HHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence            221 235666777777776 3333221 2223456667777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=2.8e-24  Score=236.05  Aligned_cols=373  Identities=13%  Similarity=0.076  Sum_probs=250.6

Q ss_pred             ccccEEEeccCCCcccc-ccccc-CC-CccEEEeeCCC-CcccC-cccccccccccEEEccCCCCCCCCh----hhhcCC
Q psy3330          51 PEVQTIILRENRISNVH-YTLSF-YI-ELRSLDLSVNK-INVLG-SHNFEYQNKLLNLNISYNEISALSK----DTFKGL  121 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~-~~~~~-~~-~L~~L~Ls~n~-l~~i~-~~~f~~l~~L~~L~Ls~n~i~~~~~----~~~~~l  121 (608)
                      +++++|+|++|.++... ..+.. ++ +|++|++++|. ++... .....++++|++|+|++|.++....    ..+.++
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~  191 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN  191 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred             CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence            68999999999887532 33443 34 49999999886 22211 1123478999999999998765532    345678


Q ss_pred             CcCcEeeccCCcCCccCh----hhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC---CCcccccCC
Q psy3330         122 KELKTLDLSYNKISVINK----TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD---VPNNVLSNL  194 (608)
Q Consensus       122 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l  194 (608)
                      ++|++|++++|.++++..    ..+.++++|+.|++++|.+.++  +..+..+++|++|+++......   .....+..+
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL--VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG--HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH--HHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            999999999999875443    3456789999999999988876  5778899999999998533221   111223444


Q ss_pred             CCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCc-ccccCCCccCEEeccCCcCCC-CChhhhhCCCCC
Q psy3330         195 PHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE-SSFVTLRTLHSLDLSNNNLSA-IPTKQLSKLSAL  272 (608)
Q Consensus       195 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~l~~L  272 (608)
                        ++|+.|+++++....+ +..+.. +++|++|++++|.++.... ..+..+++|++|+++ +.+.. ..+..+..+++|
T Consensus       270 --~~L~~L~l~~~~~~~l-~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          270 --RKLCRLGLSYMGPNEM-PILFPF-AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             --TTCCEEEETTCCTTTG-GGGGGG-GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred             --ccccccCccccchhHH-HHHHhh-cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence              5689999987644333 334444 7899999999998765332 335788999999998 44432 223445778999


Q ss_pred             CEEecc-----------CCCCCccChhh-hCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCce
Q psy3330         273 VNLDLS-----------GNNFSNIDSVA-FKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLK  340 (608)
Q Consensus       273 ~~L~Ls-----------~N~l~~~~~~~-f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~  340 (608)
                      +.|+++           .|.++...... +..+++|+.|++.. .       .+.+..+..+..            ...+
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~-------~l~~~~~~~l~~------------~~~~  404 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-S-------DITNESLESIGT------------YLKN  404 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-S-------CCCHHHHHHHHH------------HCCS
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-C-------CccHHHHHHHHh------------hCCC
Confidence            999999           35666443332 45688999998831 1       111111111111            0114


Q ss_pred             ecEEecC----CCCCCCcCh-----hhhcccccccccccccCCC-CCcCChhhh-cCCcccceeecccCccccc-cCccc
Q psy3330         341 CDRLDLS----GNNFSNIDS-----VAFKSLFSLKLVKINLIPN-LDSIDQRAF-VDNIQLETVIINENMNLKQ-LPSKL  408 (608)
Q Consensus       341 l~~L~ls----~n~l~~~~~-----~~~~~l~~L~~l~l~~~~~-l~~~~~~~f-~~l~~L~~L~Ls~N~~l~~-lp~~~  408 (608)
                      ++.|+++    .|.+++.+.     ..+.++++|+.|+++++.+ ++......+ ..+++|++|++++|+ ++. -....
T Consensus       405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~  483 (592)
T 3ogk_B          405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEF  483 (592)
T ss_dssp             CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHH
T ss_pred             CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHH
Confidence            5788885    778887643     3367789999999976432 443333333 347889999999997 543 22223


Q ss_pred             CCCCCCCCEEEcCCCcccc--cCCCCCCCCCCCEEEccCCccccc
Q psy3330         409 FQGNTNLKSVSLKGNSLSH--LEASHFPLERISFLDLSDNPLHCD  451 (608)
Q Consensus       409 f~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~L~~N~~~Cd  451 (608)
                      +.++++|+.|+|++|.++.  ++.....+++|++|++++|+++..
T Consensus       484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            5778999999999999872  443334578999999999997654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.88  E-value=5.1e-22  Score=189.83  Aligned_cols=167  Identities=21%  Similarity=0.329  Sum_probs=131.2

Q ss_pred             CccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeecc
Q psy3330         223 NLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN  302 (608)
Q Consensus       223 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~  302 (608)
                      ..+.++.+++.+..++...   .++|++|+|++|+++++++..|.++++|+.|+|++|+++.+++..|..+++|+.|++ 
T Consensus        20 s~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L-   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL-   95 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC-
T ss_pred             eCCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC-
Confidence            3556777777777765422   367788888888888877777777888888888888887777776776666654444 


Q ss_pred             CCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChh
Q psy3330         303 LIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQR  382 (608)
Q Consensus       303 ~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~  382 (608)
                                                                  ++|++++++                         +.
T Consensus        96 --------------------------------------------s~N~l~~l~-------------------------~~  106 (229)
T 3e6j_A           96 --------------------------------------------GTNQLTVLP-------------------------SA  106 (229)
T ss_dssp             --------------------------------------------CSSCCCCCC-------------------------TT
T ss_pred             --------------------------------------------CCCcCCccC-------------------------hh
Confidence                                                        555555544                         44


Q ss_pred             hhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHH
Q psy3330         383 AFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWIL  460 (608)
Q Consensus       383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~  460 (608)
                      .|..+++|++|+|++|+ ++.+|.. +..+++|+.|+|++|+|+.+++..+ .+++|+.|++++|||.|+|+ +.|+..|
T Consensus       107 ~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~  184 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNW  184 (229)
T ss_dssp             TTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHH
T ss_pred             HhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHH
Confidence            56667889999999997 8899987 7889999999999999999998755 68999999999999999996 8999999


Q ss_pred             HHhh
Q psy3330         461 VQLQ  464 (608)
Q Consensus       461 ~~~~  464 (608)
                      +..+
T Consensus       185 ~~~~  188 (229)
T 3e6j_A          185 VADH  188 (229)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.88  E-value=3.6e-22  Score=185.33  Aligned_cols=115  Identities=24%  Similarity=0.574  Sum_probs=96.0

Q ss_pred             hhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCC-CCCCCCCEEEccCCccccccCChHHHHH
Q psy3330         382 RAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASH-FPLERISFLDLSDNPLHCDCNLLWLWIL  460 (608)
Q Consensus       382 ~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~L~~N~~~CdC~~~~~~~~  460 (608)
                      ..|.++++|++|+|++|+ ++.++...|.++++|+.|+|++|+|+.+++.. ..+++|++|++++|+|.|+|++.|+..|
T Consensus        72 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~  150 (192)
T 1w8a_A           72 NAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW  150 (192)
T ss_dssp             TTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             hHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHH
Confidence            344556777888888887 78888888999999999999999999875554 4789999999999999999999999999


Q ss_pred             HHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330         461 VQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN  538 (608)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~  538 (608)
                      ++...                                         ...+...|..|+.++|+.+.+++.+++.|...
T Consensus       151 l~~~~-----------------------------------------~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          151 LRKKS-----------------------------------------LNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             HHHHC-----------------------------------------CSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred             HHHcC-----------------------------------------CCCCCCCCCCChHHcCCChhhCcHhhcCcCCC
Confidence            87421                                         11235689999999999999999999999864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=6.2e-23  Score=205.99  Aligned_cols=225  Identities=20%  Similarity=0.140  Sum_probs=148.7

Q ss_pred             cccEEEeccCCCcc--ccc--ccccCCCccEEEeeCCCCcccCcccc--cccccccEEEccCCCCCCCCh----hhhcCC
Q psy3330          52 EVQTIILRENRISN--VHY--TLSFYIELRSLDLSVNKINVLGSHNF--EYQNKLLNLNISYNEISALSK----DTFKGL  121 (608)
Q Consensus        52 ~l~~L~L~~n~i~~--l~~--~~~~~~~L~~L~Ls~n~l~~i~~~~f--~~l~~L~~L~Ls~n~i~~~~~----~~~~~l  121 (608)
                      .++.+.+.++.++.  +..  .+..+++|++|++++|.+++..+..+  ..+++|++|+|++|.++...+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            46777777776653  111  22334568888888888877666666  777888888888888775322    344567


Q ss_pred             CcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCc---cCchhhhcCCCCccEEEccCCCCCCCCcc---cccCCC
Q psy3330         122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITY---FEDSEIFSSLKSLRILKLDNNQILDVPNN---VLSNLP  195 (608)
Q Consensus       122 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~  195 (608)
                      ++|++|++++|++..+++..|.++++|++|++++|++.+   +..+..+..+++|++|++++|+++.++..   .+..+ 
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l-  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG-  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT-
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC-
Confidence            788888888888877777777788888888888887654   22122346677788888888877655432   23344 


Q ss_pred             CCCceEEEccCCCCccccCCCccccC---CCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCC
Q psy3330         196 HQSLHYLYLNENLIETVLDNSFPFTL---TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSAL  272 (608)
Q Consensus       196 ~~~L~~L~L~~n~l~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L  272 (608)
                       ++|++|++++|.+++..+..+.. +   ++|++|++++|+++.++. .+  .++|++|++++|+++++|.  +..+++|
T Consensus       224 -~~L~~L~Ls~N~l~~~~p~~~~~-~~~~~~L~~L~Ls~N~l~~lp~-~~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L  296 (310)
T 4glp_A          224 -VQPHSLDLSHNSLRATVNPSAPR-CMWSSALNSLNLSFAGLEQVPK-GL--PAKLRVLDLSSNRLNRAPQ--PDELPEV  296 (310)
T ss_dssp             -CCCSSEECTTSCCCCCCCSCCSS-CCCCTTCCCEECCSSCCCSCCS-CC--CSCCSCEECCSCCCCSCCC--TTSCCCC
T ss_pred             -CCCCEEECCCCCCCccchhhHHh-ccCcCcCCEEECCCCCCCchhh-hh--cCCCCEEECCCCcCCCCch--hhhCCCc
Confidence             44777777777777765444443 3   577777777777775533 23  2577777777777777653  5666777


Q ss_pred             CEEeccCCCCCc
Q psy3330         273 VNLDLSGNNFSN  284 (608)
Q Consensus       273 ~~L~Ls~N~l~~  284 (608)
                      +.|++++|+++.
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            777777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.6e-22  Score=201.00  Aligned_cols=196  Identities=26%  Similarity=0.378  Sum_probs=133.4

Q ss_pred             ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330          71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL  150 (608)
Q Consensus        71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  150 (608)
                      ..+++|++|++++|.++.++  .+..+++|++|++++|.++.+++  +.++++|++|++++|+++.++  .+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence            45666777777777777664  36667777777777777776664  677777777777777776652  4667777777


Q ss_pred             EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330         151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS  230 (608)
Q Consensus       151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  230 (608)
                      |++++|.++.++   .+..+++|++|++++|.++.+++  +..+  ++|+.|++++|.++++.+  +.. +++|+.|+++
T Consensus       112 L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--l~~l--~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~  181 (308)
T 1h6u_A          112 LDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP--LAGL--TNLQYLSIGNAQVSDLTP--LAN-LSKLTTLKAD  181 (308)
T ss_dssp             EECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GGGC--TTCCEEECCSSCCCCCGG--GTT-CTTCCEEECC
T ss_pred             EECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc--ccCC--CCccEEEccCCcCCCChh--hcC-CCCCCEEECC
Confidence            777777776653   26677777777777777766654  4455  447777777776666544  444 6777777777


Q ss_pred             CCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccC
Q psy3330         231 SNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID  286 (608)
Q Consensus       231 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  286 (608)
                      +|.++++.+  +..+++|++|++++|+++++++  +..+++|+.|++++|++++.+
T Consensus       182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred             CCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence            777766543  6667777777777777777663  677777777777777776644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=5.7e-22  Score=198.55  Aligned_cols=195  Identities=26%  Similarity=0.397  Sum_probs=177.0

Q ss_pred             CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330          50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL  129 (608)
Q Consensus        50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  129 (608)
                      .+++++|+++++.++.++ .+..+++|++|++++|.++.+++  +..+++|++|++++|.++.++  .+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEEC
Confidence            468999999999999987 68899999999999999999887  899999999999999999875  5999999999999


Q ss_pred             cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC
Q psy3330         130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI  209 (608)
Q Consensus       130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l  209 (608)
                      ++|+++.+++  +..+++|++|++++|.++.+. +  +..+++|+.|++++|+++.+++  +..+  ++|+.|++++|.+
T Consensus       115 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~--l~~l~~L~~L~l~~n~l~~~~~--l~~l--~~L~~L~l~~n~l  185 (308)
T 1h6u_A          115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNIS-P--LAGLTNLQYLSIGNAQVSDLTP--LANL--SKLTTLKADDNKI  185 (308)
T ss_dssp             TTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G--GGGCTTCCEEECCSSCCCCCGG--GTTC--TTCCEEECCSSCC
T ss_pred             CCCCCCCchh--hcCCCCCCEEECCCCccCcCc-c--ccCCCCccEEEccCCcCCCChh--hcCC--CCCCEEECCCCcc
Confidence            9999998854  899999999999999999875 3  8899999999999999998876  6777  5699999999999


Q ss_pred             ccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCCh
Q psy3330         210 ETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPT  263 (608)
Q Consensus       210 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~  263 (608)
                      +++.+  +.. +++|+.|++++|.++++.  .+..+++|+.|++++|.++..|.
T Consensus       186 ~~~~~--l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          186 SDISP--LAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CCCGG--GGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CcChh--hcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence            98865  665 999999999999999876  38899999999999999988774

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=3.1e-23  Score=212.94  Aligned_cols=180  Identities=22%  Similarity=0.274  Sum_probs=106.4

Q ss_pred             EEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCc----ccccccc-cccEEEccCCCCCCCChhhhcCC-----Cc
Q psy3330          55 TIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGS----HNFEYQN-KLLNLNISYNEISALSKDTFKGL-----KE  123 (608)
Q Consensus        55 ~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~----~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~  123 (608)
                      .++++.|.+++..+ .+...++|++|+|++|.++.++.    ..|..++ +|++|+|++|.++...+..|..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677777776443 34445558888888888877776    6667777 78888888887777766666554     77


Q ss_pred             CcEeeccCCcCCccChhhh----CCC-CCCcEEEccCCCCCccCchhhh----cC-CCCccEEEccCCCCCCCCcccc--
Q psy3330         124 LKTLDLSYNKISVINKTAF----RDT-LHLELLILSFNNITYFEDSEIF----SS-LKSLRILKLDNNQILDVPNNVL--  191 (608)
Q Consensus       124 L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~----~~-l~~L~~L~L~~n~l~~~~~~~~--  191 (608)
                      |++|+|++|.++...+..+    ..+ ++|++|++++|.++... +..+    .. .++|++|++++|++.......+  
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            7777777777776655533    333 67777777777776655 3332    23 2467777777776654332221  


Q ss_pred             --cCCCCCCceEEEccCCCCccccCCCccc---cC-CCccEEEccCCCCCc
Q psy3330         192 --SNLPHQSLHYLYLNENLIETVLDNSFPF---TL-TNLHTLALSSNIISF  236 (608)
Q Consensus       192 --~~l~~~~L~~L~L~~n~l~~~~~~~~~~---~l-~~L~~L~L~~n~l~~  236 (608)
                        ...+ .+|++|++++|.+++..+..+..   .. ++|+.|++++|.++.
T Consensus       161 ~l~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          161 ILAAIP-ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHhcCC-ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence              2221 24555555555555443322211   02 345555555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.2e-22  Score=208.56  Aligned_cols=222  Identities=22%  Similarity=0.254  Sum_probs=137.4

Q ss_pred             EEeeCCCCcccCcccccccccccEEEccCCCCCCCCh----hhhcCCC-cCcEeeccCCcCCccChhhhCCC-----CCC
Q psy3330          79 LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSK----DTFKGLK-ELKTLDLSYNKISVINKTAFRDT-----LHL  148 (608)
Q Consensus        79 L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L  148 (608)
                      +++++|++++..+..+...++|++|+|++|.++..++    .+|.+++ +|++|+|++|.++...+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5667777776655555555557777777777777766    5666676 67777777777776666555553     677


Q ss_pred             cEEEccCCCCCccCchhh----hcCC-CCccEEEccCCCCCCCCccccc----CCCCCCceEEEccCCCCccccCCCc--
Q psy3330         149 ELLILSFNNITYFEDSEI----FSSL-KSLRILKLDNNQILDVPNNVLS----NLPHQSLHYLYLNENLIETVLDNSF--  217 (608)
Q Consensus       149 ~~L~L~~n~l~~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~----~l~~~~L~~L~L~~n~l~~~~~~~~--  217 (608)
                      ++|++++|.++... +..    +..+ ++|++|++++|+++..+...+.    .++ ++|++|++++|.++......+  
T Consensus        83 ~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           83 TSLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP-ASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSC-TTCCEEECTTSCGGGSCHHHHHH
T ss_pred             cEEECcCCcCChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCC-CceeEEEccCCcCCHHHHHHHHH
Confidence            77777777776654 332    3333 6777777777777666654332    212 457777777777764332222  


Q ss_pred             --cccC-CCccEEEccCCCCCccCcccc----cCC-CccCEEeccCCcCCCCCh----hhhhC-CCCCCEEeccCCCCCc
Q psy3330         218 --PFTL-TNLHTLALSSNIISFINESSF----VTL-RTLHSLDLSNNNLSAIPT----KQLSK-LSALVNLDLSGNNFSN  284 (608)
Q Consensus       218 --~~~l-~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~l~~----~~~~~-l~~L~~L~Ls~N~l~~  284 (608)
                        .. . ++|++|++++|.++...+..+    ... ++|++|+|++|+++....    ..+.. .++|+.|+|++|.+++
T Consensus       161 ~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          161 ILAA-IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHhc-CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence              22 3 367777777777766554333    233 477777777777766221    23333 3477777777777776


Q ss_pred             cChh----hhCCCCCCceeeccC
Q psy3330         285 IDSV----AFKSLFSLKLVKINL  303 (608)
Q Consensus       285 ~~~~----~f~~l~~L~~L~l~~  303 (608)
                      ....    .+..+++|+.|++++
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             HHHHHHHHHHhcCCCccEEEecc
Confidence            6552    235566777777753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=7.6e-22  Score=199.74  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=83.0

Q ss_pred             CccccEEEeccCCCcccc-ccccc-CCCccEEEeeCCCCc--ccCcccccccccccEEEccCCCCCCCChhhhcC-----
Q psy3330          50 NPEVQTIILRENRISNVH-YTLSF-YIELRSLDLSVNKIN--VLGSHNFEYQNKLLNLNISYNEISALSKDTFKG-----  120 (608)
Q Consensus        50 ~~~l~~L~L~~n~i~~l~-~~~~~-~~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~-----  120 (608)
                      ..++++|.++++ +.... ..+.. +++|+.|||++|++.  ......+.   .++.+.+..|   .++..+|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhccccccc
Confidence            357888888764 22111 12333 778888888888887  44443333   2455555555   566677877     


Q ss_pred             ---CCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC
Q psy3330         121 ---LKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN  180 (608)
Q Consensus       121 ---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  180 (608)
                         +++|+.|+|++ .++.++..+|.++++|+.++++.|.+..+. +.+|.++.++..+....
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~-~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLL-PEALADSVTAIFIPLGS  157 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEEC-TTSSCTTTCEEEECTTC
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccc-hhhhcCCCceEEecCcc
Confidence               88888888888 788888888888888888888888887776 67777777666665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.85  E-value=5.5e-21  Score=177.29  Aligned_cols=140  Identities=35%  Similarity=0.583  Sum_probs=128.1

Q ss_pred             CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330          20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNK   99 (608)
Q Consensus        20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~   99 (608)
                      ..||..|.|..  ..++|++.+++++|..+++++++|++++|.++.+|..+.++++|++|+|++|.|+.+++.+|.++++
T Consensus         2 ~~CP~~C~C~~--~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A            2 SRCPTECTCLD--TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             --CCTTCEEET--TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCCCEeCC--CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence            57999999964  5899999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCcc
Q psy3330         100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF  161 (608)
Q Consensus       100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  161 (608)
                      |++|+|++|+|+.+++.+|.++++|++|+|++|.++.+++..|..+++|+.|++++|.+...
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            99999999999999988999999999999999999999888899999999999999987643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=4.3e-21  Score=192.51  Aligned_cols=229  Identities=19%  Similarity=0.136  Sum_probs=132.0

Q ss_pred             CCcEEEccCCCCCccCch--hhhcCCCCccEEEccCCCCCCCCcccc--cCCCCCCceEEEccCCCCccccC----CCcc
Q psy3330         147 HLELLILSFNNITYFEDS--EIFSSLKSLRILKLDNNQILDVPNNVL--SNLPHQSLHYLYLNENLIETVLD----NSFP  218 (608)
Q Consensus       147 ~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~~~L~~L~L~~n~l~~~~~----~~~~  218 (608)
                      .++.+.+.++.+......  ..+..+++|++|++++|.+.+..+..+  ..+  ++|++|++++|.+++..+    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG--LALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC--BCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC--CCCCEEEeecccccchhhhhHHHHhh
Confidence            345555555544322101  112234567778887777776655544  444  446666666666664322    1122


Q ss_pred             ccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCC---CCh-hhhhCCCCCCEEeccCCCCCccChh---hhC
Q psy3330         219 FTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA---IPT-KQLSKLSALVNLDLSGNNFSNIDSV---AFK  291 (608)
Q Consensus       219 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~f~  291 (608)
                      . +++|++|++++|.+..+.+..|.++++|++|++++|++.+   ++. ..+..+++|++|++++|+++.++..   .+.
T Consensus       143 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          143 L-KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             B-CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             h-ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            2 4555555555555555555555555555555555555433   111 1124455555555555555433321   122


Q ss_pred             CCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccc
Q psy3330         292 SLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKIN  371 (608)
Q Consensus       292 ~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~  371 (608)
                      .+++|                                             ++|++++|++++..|..+.           
T Consensus       222 ~l~~L---------------------------------------------~~L~Ls~N~l~~~~p~~~~-----------  245 (310)
T 4glp_A          222 AGVQP---------------------------------------------HSLDLSHNSLRATVNPSAP-----------  245 (310)
T ss_dssp             HTCCC---------------------------------------------SSEECTTSCCCCCCCSCCS-----------
T ss_pred             cCCCC---------------------------------------------CEEECCCCCCCccchhhHH-----------
Confidence            23333                                             3344455555554322221           


Q ss_pred             cCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCcccc
Q psy3330         372 LIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       372 ~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                                 .+..+++|++|++++|+ ++.+|...+   ++|+.|+|++|+|+.+|. ...+++|+.|++++|+|..
T Consensus       246 -----------~~~~~~~L~~L~Ls~N~-l~~lp~~~~---~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          246 -----------RCMWSSALNSLNLSFAG-LEQVPKGLP---AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -----------SCCCCTTCCCEECCSSC-CCSCCSCCC---SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             -----------hccCcCcCCEEECCCCC-CCchhhhhc---CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence                       11223799999999998 889998743   799999999999999865 5578999999999999863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.85  E-value=8.9e-23  Score=224.12  Aligned_cols=349  Identities=13%  Similarity=0.063  Sum_probs=191.8

Q ss_pred             cCCCccEEEeeCCCCcccCccccc-ccccccEEEccCC-CCCCC-ChhhhcCCCcCcEeeccCCcCCccChhhhC----C
Q psy3330          72 FYIELRSLDLSVNKINVLGSHNFE-YQNKLLNLNISYN-EISAL-SKDTFKGLKELKTLDLSYNKISVINKTAFR----D  144 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~~~f~-~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~  144 (608)
                      .+++|++|+|++|.++......+. .+++|++|+|++| .++.. .+..+.++++|++|++++|.++...+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            455666666666655544333333 4556666666655 33321 112233556666666666655543332222    4


Q ss_pred             CCCCcEEEccCCC--CCccCchhhhcCCCCccEEEccCC-CCCCCCcccccCCCCCCceEEEccCC--------------
Q psy3330         145 TLHLELLILSFNN--ITYFEDSEIFSSLKSLRILKLDNN-QILDVPNNVLSNLPHQSLHYLYLNEN--------------  207 (608)
Q Consensus       145 l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~L~~n--------------  207 (608)
                      +++|+.|++++|.  +........+..+++|++|++++| .+..+ +..+..+  ++|+.|++..+              
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRA--PQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-HHHHHHC--TTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-HHHHhcC--CcceEcccccccCccchhhHHHHHH
Confidence            4566666666554  111110112233466666666655 22221 1112222  22444443322              


Q ss_pred             ------------CCcccc----CCCccccCCCccEEEccCCCCCccCc-ccccCCCccCEEeccCCcCCCC-ChhhhhCC
Q psy3330         208 ------------LIETVL----DNSFPFTLTNLHTLALSSNIISFINE-SSFVTLRTLHSLDLSNNNLSAI-PTKQLSKL  269 (608)
Q Consensus       208 ------------~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~~l  269 (608)
                                  .+....    +..+.. +++|+.|++++|.++.... ..+..+++|++|++++| ++.. .......+
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~  337 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSV-CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC  337 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHH-HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHh-hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence                        111111    112223 6889999999998664322 22457889999999988 4321 11233468


Q ss_pred             CCCCEEeccC---------CCCCccChhhh-CCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCc
Q psy3330         270 SALVNLDLSG---------NNFSNIDSVAF-KSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTL  339 (608)
Q Consensus       270 ~~L~~L~Ls~---------N~l~~~~~~~f-~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~  339 (608)
                      ++|+.|++++         +.++......+ ..+++|+.|.+.. ..       +....+..+..            ...
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~-------l~~~~~~~l~~------------~~~  397 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQ-------MTNAALITIAR------------NRP  397 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SC-------CCHHHHHHHHH------------HCT
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CC-------cCHHHHHHHHh------------hCC
Confidence            8999998843         45554333333 3478888886632 11       11111111100            011


Q ss_pred             eecEEecC--C----CCCCCcChh-----hhcccccccccccccCCCCCcCChhhhcC-CcccceeecccCcccccc-Cc
Q psy3330         340 KCDRLDLS--G----NNFSNIDSV-----AFKSLFSLKLVKINLIPNLDSIDQRAFVD-NIQLETVIINENMNLKQL-PS  406 (608)
Q Consensus       340 ~l~~L~ls--~----n~l~~~~~~-----~~~~l~~L~~l~l~~~~~l~~~~~~~f~~-l~~L~~L~Ls~N~~l~~l-p~  406 (608)
                      +++.|+++  +    +.+++.+..     .+.++++|+.|+++.  .++......+.. +++|+.|++++|. ++.. ..
T Consensus       398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~  474 (594)
T 2p1m_B          398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH  474 (594)
T ss_dssp             TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH
T ss_pred             CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH
Confidence            45788888  4    667654432     266788999999964  555544444544 7899999999997 5432 22


Q ss_pred             ccCCCCCCCCEEEcCCCccccc--CCCCCCCCCCCEEEccCCcc
Q psy3330         407 KLFQGNTNLKSVSLKGNSLSHL--EASHFPLERISFLDLSDNPL  448 (608)
Q Consensus       407 ~~f~~l~~L~~L~L~~N~l~~l--~~~~~~l~~L~~L~L~~N~~  448 (608)
                      ....++++|+.|+|++|.++..  ......+++|++|++++|++
T Consensus       475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            2225689999999999998732  22333578999999999998

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=1.5e-20  Score=179.61  Aligned_cols=162  Identities=26%  Similarity=0.390  Sum_probs=137.8

Q ss_pred             CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330          20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      ......|.|.  +..|+|++.+++.+|..+++++++|+|++|.++.++ ..+..+++|++|+|++|+++.+++..|.+++
T Consensus        11 ~~~~~~~~Cs--~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~   88 (229)
T 3e6j_A           11 AACPSQCSCS--GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT   88 (229)
T ss_dssp             CCCCTTCEEE--TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccCCCCCEEe--CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence            3455678885  457999999999999999999999999999999874 5788899999999999999988888888899


Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL  178 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  178 (608)
                      +|++|+|++|+|+.+++..|..+++|++|+|++|+++.+ +..+..+++|++|++++|.++.++ +..|..+++|+.|++
T Consensus        89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYL  166 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred             CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEe
Confidence            999999999999988888888888999999999988876 455677888888888888888876 677888888888888


Q ss_pred             cCCCCCC
Q psy3330         179 DNNQILD  185 (608)
Q Consensus       179 ~~n~l~~  185 (608)
                      ++|.+..
T Consensus       167 ~~N~~~c  173 (229)
T 3e6j_A          167 FGNPWDC  173 (229)
T ss_dssp             TTSCBCT
T ss_pred             eCCCccC
Confidence            8887764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.84  E-value=1.1e-19  Score=187.96  Aligned_cols=265  Identities=15%  Similarity=0.306  Sum_probs=167.9

Q ss_pred             ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330          96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI  175 (608)
Q Consensus        96 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  175 (608)
                      .+..++.+.+. +.++.|...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+. ..+|.++.+|+.
T Consensus       111 ~~~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~-~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLK-EDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEEC-SSTTTTCTTCCE
T ss_pred             ecCCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEeh-HHHhhCcccCCe
Confidence            34556666664 34666666666664 5667766654 666666666663 566666664 555555 566666666776


Q ss_pred             EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccC
Q psy3330         176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN  255 (608)
Q Consensus       176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  255 (608)
                      +++..|+++.++..+|..   .+|+.+.+.. .++.+...+|.+ +++|+.+.+..+ ++.+...+|.+ .+|+.+.+ .
T Consensus       185 l~l~~n~l~~I~~~aF~~---~~L~~l~lp~-~l~~I~~~aF~~-~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p  256 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFVY---AGIEEVLLPV-TLKEIGSQAFLK-TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-P  256 (401)
T ss_dssp             EECTTSCCSEECTTTTTT---CCCSEEECCT-TCCEECTTTTTT-CTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-E
T ss_pred             eecCCCcceEechhhEee---cccCEEEeCC-chheehhhHhhC-CCCCCEEecCCC-ccCcccccccc-CCccEEEe-C
Confidence            666666666666665552   3466666653 255555555554 555666665543 44555555555 45555555 2


Q ss_pred             CcCCCCChhhhhCCCCCCEEeccCCCCC-----ccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccc
Q psy3330         256 NNLSAIPTKQLSKLSALVNLDLSGNNFS-----NIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLA  330 (608)
Q Consensus       256 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~  330 (608)
                      +.++.++..+|.+|++|+.+++.+|.+.     .+...+|.+|++|+.+.+                             
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l-----------------------------  307 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI-----------------------------  307 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC-----------------------------
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe-----------------------------
Confidence            3455555555555555555555554443     344455555555544444                             


Q ss_pred             cccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCC
Q psy3330         331 FSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQ  410 (608)
Q Consensus       331 ~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~  410 (608)
                                                              .  +.++.|+..+|.++.+|+.+.|..|  +..|+..+|.
T Consensus       308 ----------------------------------------~--~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~  343 (401)
T 4fdw_A          308 ----------------------------------------P--ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN  343 (401)
T ss_dssp             ----------------------------------------C--TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS
T ss_pred             ----------------------------------------C--CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC
Confidence                                                    3  4566777788888888999998665  8888888899


Q ss_pred             CCCCCCEEEcCCCcccccCCCCC-CC-CCCCEEEccCCcc
Q psy3330         411 GNTNLKSVSLKGNSLSHLEASHF-PL-ERISFLDLSDNPL  448 (608)
Q Consensus       411 ~l~~L~~L~L~~N~l~~l~~~~~-~l-~~L~~L~L~~N~~  448 (608)
                      ++ +|+.+++++|.+..++...+ .+ ..+..|++-.|..
T Consensus       344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            98 99999999998888887776 35 4677888876653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=1.6e-20  Score=176.84  Aligned_cols=179  Identities=25%  Similarity=0.337  Sum_probs=133.8

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK  133 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  133 (608)
                      +.++.+++.++.+|..+  .++|++|++++|+++.+++..|.++++|++|++++|+++.+++..|.++++|++|++++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            46777888888887654  4578888888888888888788888888888888888888887778888888888888888


Q ss_pred             CCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcccc
Q psy3330         134 ISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVL  213 (608)
Q Consensus       134 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~  213 (608)
                      ++.+++..|.++++|++|++++|.++.+. +..|..+++|++|++++|+++++++..+..+  ++|+.|++++|.+.+. 
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~l~~N~~~~~-  163 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQYIWLHDNPWDCT-  163 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSCCBCCC-
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHHhccC--CCccEEEecCCCeecC-
Confidence            88887777888888888888888888776 6667778888888888888877777666666  4477777776654421 


Q ss_pred             CCCccccCCCccEEEccCCCCCccCcccccCC
Q psy3330         214 DNSFPFTLTNLHTLALSSNIISFINESSFVTL  245 (608)
Q Consensus       214 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  245 (608)
                             +++|+.|++..|.+++..|..++.+
T Consensus       164 -------~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          164 -------CPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             -------TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             -------CCCHHHHHHHHHhCCceeeccCccc
Confidence                   4556666666666665555544433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.7e-21  Score=197.88  Aligned_cols=223  Identities=17%  Similarity=0.131  Sum_probs=140.1

Q ss_pred             ccccEEEeccCCCcccccccccC--CCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCC-ChhhhcCCCcCcEe
Q psy3330          51 PEVQTIILRENRISNVHYTLSFY--IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISAL-SKDTFKGLKELKTL  127 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~--~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L  127 (608)
                      ..++.++++++.+.  +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.++.. .+..+..+++|++|
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            34677888877766  3444555  7788888888887776664 44678888888888877653 44567778888888


Q ss_pred             eccCCcCCccChhhhCCCCCCcEEEccCC-CCCccCchhhhcCCCCccEEEccCC-CCCCC-CcccccCCCCCCceEEEc
Q psy3330         128 DLSYNKISVINKTAFRDTLHLELLILSFN-NITYFEDSEIFSSLKSLRILKLDNN-QILDV-PNNVLSNLPHQSLHYLYL  204 (608)
Q Consensus       128 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~~~L~~L~L  204 (608)
                      ++++|.++...+..+..+++|++|++++| .++....+..+.++++|++|++++| .++.. .+..+..++ .+|++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS-ETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC-TTCCEEEC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc-cCCCEEEe
Confidence            88888877666677777888888888888 5664322555777788888888877 66542 122233442 14666666


Q ss_pred             cCC--CCc-cccCCCccccCCCccEEEccCCC-CCccCcccccCCCccCEEeccCCcCCCCChh---hhhCCCCCCEEec
Q psy3330         205 NEN--LIE-TVLDNSFPFTLTNLHTLALSSNI-ISFINESSFVTLRTLHSLDLSNNNLSAIPTK---QLSKLSALVNLDL  277 (608)
Q Consensus       205 ~~n--~l~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~l~~L~~L~L  277 (608)
                      ++|  .++ +..+..+.. +++|+.|++++|. ++...+..+..+++|++|++++|.  .+.+.   .+..+++|+.|++
T Consensus       203 ~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l  279 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQV  279 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEec
Confidence            666  333 111223333 5666666666665 444444455556666666666664  22222   3555666666666


Q ss_pred             cCC
Q psy3330         278 SGN  280 (608)
Q Consensus       278 s~N  280 (608)
                      ++|
T Consensus       280 ~~~  282 (336)
T 2ast_B          280 FGI  282 (336)
T ss_dssp             TTS
T ss_pred             cCc
Confidence            655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.84  E-value=1.5e-19  Score=186.88  Aligned_cols=269  Identities=13%  Similarity=0.215  Sum_probs=232.6

Q ss_pred             ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330          71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL  150 (608)
Q Consensus        71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  150 (608)
                      ..+..++.+.+. ++++.|+..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+...+|.++++|+.
T Consensus       110 ~~~~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          110 EILKGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             EECSSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             EecCCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            446788888886 46889999999986 7999999866 899999999985 799999996 788999999999999999


Q ss_pred             EEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEcc
Q psy3330         151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALS  230 (608)
Q Consensus       151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  230 (608)
                      +++..|.++.++ ...|. ..+|+.+.+.. .+..++..+|..+  .+|+.+++..+ ++.+...+|.+  .+|+.+.+ 
T Consensus       185 l~l~~n~l~~I~-~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~--~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~l-  255 (401)
T 4fdw_A          185 ADLSKTKITKLP-ASTFV-YAGIEEVLLPV-TLKEIGSQAFLKT--SQLKTIEIPEN-VSTIGQEAFRE--SGITTVKL-  255 (401)
T ss_dssp             EECTTSCCSEEC-TTTTT-TCCCSEEECCT-TCCEECTTTTTTC--TTCCCEECCTT-CCEECTTTTTT--CCCSEEEE-
T ss_pred             eecCCCcceEec-hhhEe-ecccCEEEeCC-chheehhhHhhCC--CCCCEEecCCC-ccCcccccccc--CCccEEEe-
Confidence            999999999997 77787 58999999984 4889999999988  56999999875 78888888886  78999999 


Q ss_pred             CCCCCccCcccccCCCccCEEeccCCcCC-----CCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCC
Q psy3330         231 SNIISFINESSFVTLRTLHSLDLSNNNLS-----AIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP  305 (608)
Q Consensus       231 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~  305 (608)
                      .+.++.+...+|.++++|+.+++.+|.+.     .++..+|.+|++|+.+++. +.++.+...+|.+|++|+.+.+.   
T Consensus       256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp---  331 (401)
T 4fdw_A          256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP---  331 (401)
T ss_dssp             ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEEC---
T ss_pred             CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEEC---
Confidence            46688899999999999999999998776     6888999999999999999 56999999999999999988772   


Q ss_pred             CCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhc
Q psy3330         306 NLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFV  385 (608)
Q Consensus       306 ~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~  385 (608)
                                                                                          ++++.|+..+|.
T Consensus       332 --------------------------------------------------------------------~~l~~I~~~aF~  343 (401)
T 4fdw_A          332 --------------------------------------------------------------------ANVTQINFSAFN  343 (401)
T ss_dssp             --------------------------------------------------------------------TTCCEECTTSSS
T ss_pred             --------------------------------------------------------------------ccccEEcHHhCC
Confidence                                                                                345566778889


Q ss_pred             CCcccceeecccCccccccCcccCCCCC-CCCEEEcCCCcccc
Q psy3330         386 DNIQLETVIINENMNLKQLPSKLFQGNT-NLKSVSLKGNSLSH  427 (608)
Q Consensus       386 ~l~~L~~L~Ls~N~~l~~lp~~~f~~l~-~L~~L~L~~N~l~~  427 (608)
                      ++ +|+.+++++|. ...++..+|.+++ +++.|++..+.+..
T Consensus       344 ~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~~~~  384 (401)
T 4fdw_A          344 NT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAESVEK  384 (401)
T ss_dssp             SS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred             CC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHHHHH
Confidence            98 99999999997 8888888899885 78899998887663

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.83  E-value=2e-20  Score=173.51  Aligned_cols=140  Identities=26%  Similarity=0.443  Sum_probs=123.6

Q ss_pred             CCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccccc--cccCCCccEEEeeCCCCcccCcccccccc
Q psy3330          21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYT--LSFYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~--~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      +||..|.|..  ..++|++.+++++|..++.++++|++++|.++.++..  +..+++|++|+|++|+|+.+.+..|.+++
T Consensus         1 ~CP~~C~C~~--~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   78 (192)
T 1w8a_A            1 DCPAMCHCEG--TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             CCCTTSEEET--TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CcCCCCEECC--CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence            5999999964  6899999999999999999999999999999988763  78899999999999999998888888999


Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE  162 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  162 (608)
                      +|++|+|++|+|+.+++..|.++++|++|+|++|+++++.+..|..+++|++|++++|.+....
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            9999999999999888888888889999999999888888888888888888888888887543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=9.6e-22  Score=203.76  Aligned_cols=215  Identities=20%  Similarity=0.170  Sum_probs=119.7

Q ss_pred             cccccccCCCccEEEeeCCCCcccCcc----cccccccccEEEccCCCCCCCC---hhh-------hcCCCcCcEeeccC
Q psy3330          66 VHYTLSFYIELRSLDLSVNKINVLGSH----NFEYQNKLLNLNISYNEISALS---KDT-------FKGLKELKTLDLSY  131 (608)
Q Consensus        66 l~~~~~~~~~L~~L~Ls~n~l~~i~~~----~f~~l~~L~~L~Ls~n~i~~~~---~~~-------~~~l~~L~~L~Ls~  131 (608)
                      +...+..+++|++|+|++|.++...+.    .|..+++|++|+|++|.+..+.   +..       +..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            444555666666667766666654332    2456666667766665444321   212       35666677777777


Q ss_pred             CcCCc----cChhhhCCCCCCcEEEccCCCCCccCchhh----hcCC---------CCccEEEccCCCCCC--CCc--cc
Q psy3330         132 NKISV----INKTAFRDTLHLELLILSFNNITYFEDSEI----FSSL---------KSLRILKLDNNQILD--VPN--NV  190 (608)
Q Consensus       132 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~l---------~~L~~L~L~~n~l~~--~~~--~~  190 (608)
                      |.++.    ..+..+..+++|++|+|++|.+.... +..    +..+         ++|++|++++|+++.  ++.  ..
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA-GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH-HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH-HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            66665    22345566666777777766665332 222    2222         666666666666642  111  12


Q ss_pred             ccCCCCCCceEEEccCCCCcc-----ccCCCccccCCCccEEEccCCCCC----ccCcccccCCCccCEEeccCCcCCCC
Q psy3330         191 LSNLPHQSLHYLYLNENLIET-----VLDNSFPFTLTNLHTLALSSNIIS----FINESSFVTLRTLHSLDLSNNNLSAI  261 (608)
Q Consensus       191 ~~~l~~~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~l  261 (608)
                      +..+  ++|+.|++++|.++.     +.+..+.. +++|+.|++++|.++    ...+..+..+++|++|+|++|.++..
T Consensus       183 l~~~--~~L~~L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          183 FQSH--RLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HHHC--TTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             HHhC--CCcCEEECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence            3333  346666666666652     22234444 666777777777664    22344556666777777777776653


Q ss_pred             ----ChhhhhC--CCCCCEEeccCCCCCc
Q psy3330         262 ----PTKQLSK--LSALVNLDLSGNNFSN  284 (608)
Q Consensus       262 ----~~~~~~~--l~~L~~L~Ls~N~l~~  284 (608)
                          .+..+..  +++|+.|+|++|.++.
T Consensus       260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence                1233422  6677777777777666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=3.2e-21  Score=199.87  Aligned_cols=246  Identities=22%  Similarity=0.203  Sum_probs=189.9

Q ss_pred             CCCCccccCcc--CccccEEEeccCCCccc-----ccccccCCCccEEEeeCCCCcccC---ccc-------cccccccc
Q psy3330          39 DAGLEVVPIQL--NPEVQTIILRENRISNV-----HYTLSFYIELRSLDLSVNKINVLG---SHN-------FEYQNKLL  101 (608)
Q Consensus        39 ~~~l~~ip~~~--~~~l~~L~L~~n~i~~l-----~~~~~~~~~L~~L~Ls~n~l~~i~---~~~-------f~~l~~L~  101 (608)
                      ..++..++..+  .+++++|+|++|.++..     ...+..+++|++|+|++|.+..+.   +..       |..+++|+
T Consensus        18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~   97 (386)
T 2ca6_A           18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   97 (386)
T ss_dssp             SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence            33444444433  36899999999999863     345778999999999998655332   222       46889999


Q ss_pred             EEEccCCCCCCC----ChhhhcCCCcCcEeeccCCcCCccChhhhCC----C---------CCCcEEEccCCCCCccCch
Q psy3330         102 NLNISYNEISAL----SKDTFKGLKELKTLDLSYNKISVINKTAFRD----T---------LHLELLILSFNNITYFEDS  164 (608)
Q Consensus       102 ~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----l---------~~L~~L~L~~n~l~~~~~~  164 (608)
                      +|+|++|.++..    .+..+..+++|++|+|++|.++...+..+..    +         ++|++|++++|.+.....+
T Consensus        98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  177 (386)
T 2ca6_A           98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  177 (386)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence            999999999973    3457888999999999999997654444433    3         8999999999999844324


Q ss_pred             ---hhhcCCCCccEEEccCCCCCC-----CCcccccCCCCCCceEEEccCCCCc----cccCCCccccCCCccEEEccCC
Q psy3330         165 ---EIFSSLKSLRILKLDNNQILD-----VPNNVLSNLPHQSLHYLYLNENLIE----TVLDNSFPFTLTNLHTLALSSN  232 (608)
Q Consensus       165 ---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n  232 (608)
                         ..+..+++|++|++++|++..     +.+..+..+  ++|+.|++++|.++    ...+..+.. +++|+.|++++|
T Consensus       178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~--~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n  254 (386)
T 2ca6_A          178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC--QELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDC  254 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC--TTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTC
T ss_pred             HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC--CCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCC
Confidence               467789999999999999872     222245566  56999999999996    334456665 899999999999


Q ss_pred             CCCcc----Ccccc--cCCCccCEEeccCCcCCC-----CChhhhhCCCCCCEEeccCCCCCccCh
Q psy3330         233 IISFI----NESSF--VTLRTLHSLDLSNNNLSA-----IPTKQLSKLSALVNLDLSGNNFSNIDS  287 (608)
Q Consensus       233 ~l~~~----~~~~~--~~l~~L~~L~Ls~n~l~~-----l~~~~~~~l~~L~~L~Ls~N~l~~~~~  287 (608)
                      .++..    .+..+  ..+++|++|+|++|.++.     ++...+.++++|+.|++++|++++..+
T Consensus       255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            99865    23444  338999999999999998     665444779999999999999998774

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=5e-21  Score=194.43  Aligned_cols=254  Identities=19%  Similarity=0.139  Sum_probs=196.2

Q ss_pred             CceEEEecCCCCcccc--CccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCccc-CcccccccccccEEEccC
Q psy3330          31 QKLEASCTDAGLEVVP--IQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVL-GSHNFEYQNKLLNLNISY  107 (608)
Q Consensus        31 ~~~~v~C~~~~l~~ip--~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i-~~~~f~~l~~L~~L~Ls~  107 (608)
                      .+..++.++..+..-.  .-..+.++.|++++|.++..+..+..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus        48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~  127 (336)
T 2ast_B           48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG  127 (336)
T ss_dssp             TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence            3567777766554211  1123789999999999998877778899999999999998764 445788999999999999


Q ss_pred             CCCCCCChhhhcCCCcCcEeeccCC-cCCcc-ChhhhCCCCCCcEEEccCC-CCCccCchhhhcCCC-CccEEEccCCC-
Q psy3330         108 NEISALSKDTFKGLKELKTLDLSYN-KISVI-NKTAFRDTLHLELLILSFN-NITYFEDSEIFSSLK-SLRILKLDNNQ-  182 (608)
Q Consensus       108 n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~-~L~~L~L~~n~-  182 (608)
                      |.++...+..+..+++|++|++++| .++.. .+..+.++++|++|++++| .++....+..+..++ +|++|++++|. 
T Consensus       128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~  207 (336)
T 2ast_B          128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  207 (336)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence            9998777778999999999999999 67753 3456788999999999999 888643366788999 99999999994 


Q ss_pred             -CC--CCCcccccCCCCCCceEEEccCCC-CccccCCCccccCCCccEEEccCCC-CCccCcccccCCCccCEEeccCCc
Q psy3330         183 -IL--DVPNNVLSNLPHQSLHYLYLNENL-IETVLDNSFPFTLTNLHTLALSSNI-ISFINESSFVTLRTLHSLDLSNNN  257 (608)
Q Consensus       183 -l~--~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~  257 (608)
                       ++  .++ ..+..+  ++|+.|++++|. +++.....+.. +++|+.|++++|. +.......+..+++|++|++++| 
T Consensus       208 ~~~~~~l~-~~~~~~--~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          208 NLQKSDLS-TLVRRC--PNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             GSCHHHHH-HHHHHC--TTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             cCCHHHHH-HHHhhC--CCCCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence             43  222 234556  569999999999 77666667776 8999999999995 33222236788999999999999 


Q ss_pred             CCCCChhhhhCC-CCCCEEeccCCCCCccChhhhCC
Q psy3330         258 LSAIPTKQLSKL-SALVNLDLSGNNFSNIDSVAFKS  292 (608)
Q Consensus       258 l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~f~~  292 (608)
                      ++   ...+..+ ..+..|++++|++++..+..+..
T Consensus       283 i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          283 VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence            43   3334333 23666778999999988876653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=4.4e-19  Score=190.60  Aligned_cols=188  Identities=20%  Similarity=0.258  Sum_probs=129.3

Q ss_pred             CccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEcc
Q psy3330          75 ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILS  154 (608)
Q Consensus        75 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  154 (608)
                      +|+.|++++|+++++|...+   ++|++|+|++|.|+.++    ..+++|++|++++|+|++++.  +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence            66677777777766665432   56777777777777665    235677777777777776544  443  67777777


Q ss_pred             CCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCC
Q psy3330         155 FNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII  234 (608)
Q Consensus       155 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  234 (608)
                      +|.+++++ .    .+++|+.|++++|.++.+|.    .+  ++|+.|++++|.+++++.  |.   ++|+.|++++|.+
T Consensus       129 ~N~l~~lp-~----~l~~L~~L~Ls~N~l~~lp~----~l--~~L~~L~Ls~N~L~~lp~--l~---~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          129 NNQLTMLP-E----LPALLEYINADNNQLTMLPE----LP--TSLEVLSVRNNQLTFLPE--LP---ESLEALDVSTNLL  192 (571)
T ss_dssp             SSCCSCCC-C----CCTTCCEEECCSSCCSCCCC----CC--TTCCEEECCSSCCSCCCC--CC---TTCCEEECCSSCC
T ss_pred             CCcCCCCC-C----cCccccEEeCCCCccCcCCC----cC--CCcCEEECCCCCCCCcch--hh---CCCCEEECcCCCC
Confidence            77777754 2    46777777777777777665    22  457777777777777544  32   6777788888877


Q ss_pred             CccCcccccCCCcc-------CEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCC
Q psy3330         235 SFINESSFVTLRTL-------HSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLF  294 (608)
Q Consensus       235 ~~~~~~~~~~l~~L-------~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~  294 (608)
                      +.++.  |..  +|       +.|+|++|+++.+|.. +..+++|+.|+|++|++++..+..+..+.
T Consensus       193 ~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          193 ESLPA--VPV--RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             SSCCC--CC----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             Cchhh--HHH--hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            76644  433  66       9999999999998864 55599999999999999988777765543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=8.4e-20  Score=184.69  Aligned_cols=240  Identities=16%  Similarity=0.203  Sum_probs=186.8

Q ss_pred             CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccc--------cccccEEEccCCCCCCCChhhhcCC
Q psy3330          50 NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEY--------QNKLLNLNISYNEISALSKDTFKGL  121 (608)
Q Consensus        50 ~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~--------l~~L~~L~Ls~n~i~~~~~~~~~~l  121 (608)
                      .++++.|+|++|++......-+.++.++.+.+..|   .|+..+|.+        +++|+.|+|.+ .++.+++.+|.++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred             hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence            46799999999999832221122333455555555   677788888        99999999988 8888988899999


Q ss_pred             CcCcEeeccCCcCCccChhhhCCCCCCcEEEccCC----CCCccCchhhhcCCCCcc-EEEccCCCCCCCCcc-------
Q psy3330         122 KELKTLDLSYNKISVINKTAFRDTLHLELLILSFN----NITYFEDSEIFSSLKSLR-ILKLDNNQILDVPNN-------  189 (608)
Q Consensus       122 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~-------  189 (608)
                      ++|+.+++++|.+..+.+.+|.++.++..+.+..+    ....+. ...|.++..|+ .+.+....  .++..       
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~-~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~  200 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE-HFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQ  200 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT-TSCEEESCCCEEEEEECTTC--CHHHHHHHTTCC
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc-ccccccccccceeEEecCCC--cHHHHHhhcccC
Confidence            99999999999988888889988887777776652    222333 44566666665 34433211  01100       


Q ss_pred             -------------------cc-cCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccC
Q psy3330         190 -------------------VL-SNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLH  249 (608)
Q Consensus       190 -------------------~~-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  249 (608)
                                         .+ ..+  ++|+.+++++|.++.+++..|.+ +++|+.+++.+| ++.+.+.+|.++++|+
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~--~~L~~l~L~~n~i~~I~~~aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYM--PNLVSLDISKTNATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHC--TTCCEEECTTBCCCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ccccceEEEeeeecHHHHHHHHHhc--CCCeEEECCCCCcceecHhhhhC-CCCCCEEECCcc-cceehHHHhhCChhcc
Confidence                               00 013  56999999999999999999998 999999999998 8899999999999999


Q ss_pred             -EEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330         250 -SLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI  301 (608)
Q Consensus       250 -~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l  301 (608)
                       .+++.+ .++.+++.+|.+|++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus       277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence             999998 899999999999999999999999999999999999999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.81  E-value=1.8e-19  Score=164.84  Aligned_cols=139  Identities=27%  Similarity=0.433  Sum_probs=123.0

Q ss_pred             CCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccc
Q psy3330          22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKL  100 (608)
Q Consensus        22 Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L  100 (608)
                      ||..|.|.  +..++|++.+++.+|..+++++++|++++|.++.++. .+..+++|++|++++|+++.+++..|..+++|
T Consensus         1 Cp~~C~C~--~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (177)
T 2o6r_A            1 CPSRCSCS--GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL   78 (177)
T ss_dssp             CCTTCEEE--TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCCCEeC--CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc
Confidence            99999995  5689999999999999999999999999999998876 56888999999999999999888888889999


Q ss_pred             cEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC
Q psy3330         101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE  162 (608)
Q Consensus       101 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  162 (608)
                      ++|++++|.++.+++..|.++++|++|++++|+++.+++..|..+++|++|++++|.+....
T Consensus        79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            99999999999888888888899999999999998888877888888999999888887653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=1.6e-21  Score=214.10  Aligned_cols=374  Identities=13%  Similarity=0.072  Sum_probs=239.6

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCC-CcccC--------------cccccccccccEEEccCCCCCCCChhhh
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNK-INVLG--------------SHNFEYQNKLLNLNISYNEISALSKDTF  118 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~-l~~i~--------------~~~f~~l~~L~~L~Ls~n~i~~~~~~~~  118 (608)
                      +.++++..........+..+++|+.|+++++. +..+.              ...+..+++|++|+|++|.++......+
T Consensus        46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l  125 (594)
T 2p1m_B           46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI  125 (594)
T ss_dssp             CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred             eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence            34555444333333456778888899988874 22221              1123467899999999999886655556


Q ss_pred             c-CCCcCcEeeccCC-cCCccC-hhhhCCCCCCcEEEccCCCCCccCchhhh----cCCCCccEEEccCCCCCCCCcccc
Q psy3330         119 K-GLKELKTLDLSYN-KISVIN-KTAFRDTLHLELLILSFNNITYFEDSEIF----SSLKSLRILKLDNNQILDVPNNVL  191 (608)
Q Consensus       119 ~-~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~  191 (608)
                      . .+++|++|++++| .++... +..+.++++|++|++++|.+++.. +..+    ..+++|++|++++|. ..+....+
T Consensus       126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l  203 (594)
T 2p1m_B          126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-GHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL  203 (594)
T ss_dssp             HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-GGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred             HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-hHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence            4 6899999999999 555422 234457899999999999977654 3333    367799999999987 33433322


Q ss_pred             ----cCCCCCCceEEEccCC-CCccccCCCccccCCCccEEEccCCC--------------------------CCccCc-
Q psy3330         192 ----SNLPHQSLHYLYLNEN-LIETVLDNSFPFTLTNLHTLALSSNI--------------------------ISFINE-  239 (608)
Q Consensus       192 ----~~l~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~--------------------------l~~~~~-  239 (608)
                          ..+  ++|+.|++++| .+.+ .+..+.. +++|+.|++..+.                          +..... 
T Consensus       204 ~~l~~~~--~~L~~L~L~~~~~~~~-l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~  279 (594)
T 2p1m_B          204 ERLVTRC--PNLKSLKLNRAVPLEK-LATLLQR-APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA  279 (594)
T ss_dssp             HHHHHHC--TTCCEEECCTTSCHHH-HHHHHHH-CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred             HHHHHhC--CCCcEEecCCCCcHHH-HHHHHhc-CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence                234  56999999998 3333 3333444 7778888765442                          111111 


Q ss_pred             ---ccccCCCccCEEeccCCcCCCCC-hhhhhCCCCCCEEeccCCCCCccChhh-hCCCCCCceeeccCCCCCC-CCCcc
Q psy3330         240 ---SSFVTLRTLHSLDLSNNNLSAIP-TKQLSKLSALVNLDLSGNNFSNIDSVA-FKSLFSLKLVKINLIPNLD-SIDQP  313 (608)
Q Consensus       240 ---~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~-f~~l~~L~~L~l~~~~~l~-~~~~~  313 (608)
                         ..+..+++|++|++++|.++... ...+..+++|+.|++++| +....... ...+++|+.|++..+.... ...+.
T Consensus       280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~  358 (594)
T 2p1m_B          280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA  358 (594)
T ss_dssp             GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred             hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence               22235789999999999976422 234668999999999988 44222222 2458899999984321000 00000


Q ss_pred             cccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhc-ccccccccccc-----cCCCCCcCCh-----h
Q psy3330         314 LSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFK-SLFSLKLVKIN-----LIPNLDSIDQ-----R  382 (608)
Q Consensus       314 ~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~-~l~~L~~l~l~-----~~~~l~~~~~-----~  382 (608)
                      ........+..            +..+++.|+++.|++++.....+. .+++|+.|++.     .++.++..+.     .
T Consensus       359 l~~~~l~~l~~------------~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~  426 (594)
T 2p1m_B          359 LTEQGLVSVSM------------GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA  426 (594)
T ss_dssp             CCHHHHHHHHH------------HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred             CCHHHHHHHHH------------hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence            10000000000            012458889999999886666665 58899999998     4566664432     2


Q ss_pred             hhcCCcccceeecccCccccccCcccCC-CCCCCCEEEcCCCcccccC-CCC-CCCCCCCEEEccCCcc
Q psy3330         383 AFVDNIQLETVIINENMNLKQLPSKLFQ-GNTNLKSVSLKGNSLSHLE-ASH-FPLERISFLDLSDNPL  448 (608)
Q Consensus       383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~-~l~~L~~L~L~~N~l~~l~-~~~-~~l~~L~~L~L~~N~~  448 (608)
                      .+.++++|+.|+++++  ++......+. .+++|+.|+|++|.++... ..+ ..+++|++|+|++|++
T Consensus       427 l~~~~~~L~~L~L~~~--l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          427 IVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHHCTTCCEEECCSS--CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             HHhhCCCccEEeecCc--ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            2667899999999873  4332222233 3789999999999987322 112 2478999999999998

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=4.8e-19  Score=190.30  Aligned_cols=187  Identities=25%  Similarity=0.331  Sum_probs=124.6

Q ss_pred             cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330          52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY  131 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  131 (608)
                      +++.|++++|.++.+|..+  .++|++|+|++|+|+.+|    ..+++|++|+|++|.|+.++.  |.+  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            5667777777777666644  256777777777777666    235677777777777777654  443  677777777


Q ss_pred             CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330         132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET  211 (608)
Q Consensus       132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~  211 (608)
                      |++++++.    .+++|+.|++++|.+++++ .    .+++|++|++++|.++.+|.  +.    ++|+.|++++|.++.
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp-~----~l~~L~~L~Ls~N~L~~lp~--l~----~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNNQLTMLP-E----LPTSLEVLSVRNNQLTFLPE--LP----ESLEALDVSTNLLES  194 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCC--CC----TTCCEEECCSSCCSS
T ss_pred             CcCCCCCC----cCccccEEeCCCCccCcCC-C----cCCCcCEEECCCCCCCCcch--hh----CCCCEEECcCCCCCc
Confidence            77776544    4567777777777777654 2    45677777777777777665  32    447777777777776


Q ss_pred             ccCCCccccCCCc-------cEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCC
Q psy3330         212 VLDNSFPFTLTNL-------HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL  269 (608)
Q Consensus       212 ~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l  269 (608)
                      ++.  +..   +|       +.|++++|.++.++. .+..+++|+.|+|++|.+++..+..+..+
T Consensus       195 lp~--~~~---~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          195 LPA--VPV---RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCC--CC-----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hhh--HHH---hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            554  332   45       888888888887644 44458888888888888887666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=3.3e-19  Score=176.82  Aligned_cols=175  Identities=29%  Similarity=0.351  Sum_probs=110.5

Q ss_pred             cccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCcc
Q psy3330          95 EYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLR  174 (608)
Q Consensus        95 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  174 (608)
                      ..+++|++|++++|.+..++  .+..+++|++|++++|+++++++  +.++++|++|++++|.++.++   .+..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS---SLKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG---GGTTCTTCC
T ss_pred             hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh---hhccCCCCC
Confidence            34555555555555555553  25555556666666665555543  555566666666666555542   255566666


Q ss_pred             EEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEecc
Q psy3330         175 ILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLS  254 (608)
Q Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  254 (608)
                      +|++++|++..++  .+..+  ++|+.|++++|.++++  ..+.. +++|+.|++++|.++++.+  +..+++|+.|+++
T Consensus       116 ~L~L~~n~i~~~~--~l~~l--~~L~~L~l~~n~l~~~--~~l~~-l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~  186 (291)
T 1h6t_A          116 SLSLEHNGISDIN--GLVHL--PQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS  186 (291)
T ss_dssp             EEECTTSCCCCCG--GGGGC--TTCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             EEECCCCcCCCCh--hhcCC--CCCCEEEccCCcCCcc--hhhcc-CCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence            6666666665542  24444  3466666666666655  34444 7778888888887777654  7778888888888


Q ss_pred             CCcCCCCChhhhhCCCCCCEEeccCCCCCccCh
Q psy3330         255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDS  287 (608)
Q Consensus       255 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  287 (608)
                      +|++++++  .+..+++|+.|++++|+++..+.
T Consensus       187 ~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          187 KNHISDLR--ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             SSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence            88888875  37788888888888888776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.79  E-value=1.4e-18  Score=180.28  Aligned_cols=334  Identities=19%  Similarity=0.286  Sum_probs=238.3

Q ss_pred             Cccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhh
Q psy3330          63 ISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTA  141 (608)
Q Consensus        63 i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  141 (608)
                      ++.|.. +|.++.+|+.+.+. +.++.|+..+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +..+...+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            556664 78999999999997 4599999999999999999999754 88899999999999999888764 77777888


Q ss_pred             hCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccC
Q psy3330         142 FRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTL  221 (608)
Q Consensus       142 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l  221 (608)
                      |.++..++.....  ....+. ..+|.++.+|+.+.+..+ +..++..+|..+  .+|+.+.+..+ ++.+....|.+ +
T Consensus       136 F~~~~~~~~~~~~--~~~~i~-~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c--~~L~~i~l~~~-~~~I~~~~F~~-~  207 (394)
T 4fs7_A          136 FKGCDFKEITIPE--GVTVIG-DEAFATCESLEYVSLPDS-METLHNGLFSGC--GKLKSIKLPRN-LKIIRDYCFAE-C  207 (394)
T ss_dssp             TTTCCCSEEECCT--TCCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTTC--TTCCBCCCCTT-CCEECTTTTTT-C
T ss_pred             eecccccccccCc--cccccc-hhhhcccCCCcEEecCCc-cceeccccccCC--CCceEEEcCCC-ceEeCchhhcc-c
Confidence            8887654443332  233444 678999999999999754 566888888887  56998888766 77777888887 8


Q ss_pred             CCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeec
Q psy3330         222 TNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKI  301 (608)
Q Consensus       222 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l  301 (608)
                      ..|+.+.+..+... +... +....+|+.+.+.. .++.+...+|.++..++.+.+..+ ...+...+|..+..++.+..
T Consensus       208 ~~L~~i~~~~~~~~-i~~~-~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~  283 (394)
T 4fs7_A          208 ILLENMEFPNSLYY-LGDF-ALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIY  283 (394)
T ss_dssp             TTCCBCCCCTTCCE-ECTT-TTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEE
T ss_pred             cccceeecCCCceE-eehh-hcccCCCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceecc
Confidence            88888887765432 3233 33456888888864 466777778899999999999865 55677788888888887766


Q ss_pred             cCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCCh
Q psy3330         302 NLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQ  381 (608)
Q Consensus       302 ~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~  381 (608)
                      ....            ++..            ......+++.+.+.+ .++.+...+|.++++|+.+++.  +.++.|+.
T Consensus       284 ~~~~------------i~~~------------~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~  336 (394)
T 4fs7_A          284 GSVI------------VPEK------------TFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLP--YLVEEIGK  336 (394)
T ss_dssp             CSSE------------ECTT------------TTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCC--TTCCEECT
T ss_pred             Ccee------------eccc------------ccccccccccccccc-ccceechhhhcCCCCCCEEEeC--CcccEEhH
Confidence            3110            0000            001111335555544 3666777777777777777775  45677777


Q ss_pred             hhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEE
Q psy3330         382 RAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFL  441 (608)
Q Consensus       382 ~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L  441 (608)
                      .+|.++.+|+.+.+..+  +..|+..+|.++++|+.+++..+ ++.+...+..+.+|+.+
T Consensus       337 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            77777777777777655  67777777777777777777543 44454444455555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.1e-18  Score=173.05  Aligned_cols=192  Identities=26%  Similarity=0.331  Sum_probs=156.1

Q ss_pred             ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330          53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      +..+.+..+.++.+. .+..+++|+.|++++|.++.++  .+..+++|++|++++|+++.+++  +.++++|++|++++|
T Consensus        26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            333445555555432 2356788899999999988885  37888999999999999988875  888999999999999


Q ss_pred             cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccc
Q psy3330         133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV  212 (608)
Q Consensus       133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~  212 (608)
                      .++.++  .+..+++|++|++++|.+..+.   .+..+++|+.|++++|+++.+  ..+..+  ++|+.|++++|.++++
T Consensus       101 ~l~~~~--~l~~l~~L~~L~L~~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~--~~l~~l--~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          101 KVKDLS--SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDI--TVLSRL--TKLDTLSLEDNQISDI  171 (291)
T ss_dssp             CCCCGG--GGTTCTTCCEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCC--GGGGGC--TTCSEEECCSSCCCCC
T ss_pred             cCCCCh--hhccCCCCCEEECCCCcCCCCh---hhcCCCCCCEEEccCCcCCcc--hhhccC--CCCCEEEccCCccccc
Confidence            988864  4888899999999999988863   478889999999999999887  346677  5699999999999888


Q ss_pred             cCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCCh
Q psy3330         213 LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPT  263 (608)
Q Consensus       213 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~  263 (608)
                      .+  +.. +++|+.|++++|.++.+.  .+..+++|+.|++++|+++..+.
T Consensus       172 ~~--l~~-l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          172 VP--LAG-LTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             GG--GTT-CTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             hh--hcC-CCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence            66  665 899999999999998873  48889999999999999988764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=5.4e-19  Score=192.03  Aligned_cols=191  Identities=26%  Similarity=0.327  Sum_probs=112.1

Q ss_pred             ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330          53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      +..+.+..+.+..+.. +..+++|+.|++++|.+..++  .|..+++|+.|+|++|.++.+++  +..+++|+.|+|++|
T Consensus        23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            4444455555544332 345666667777777766664  36666777777777777766654  666677777777777


Q ss_pred             cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccc
Q psy3330         133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV  212 (608)
Q Consensus       133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~  212 (608)
                      .++.++  .+..+++|+.|+|++|.+..++   .+..+++|+.|+|++|.+..+  ..+..+  ++|+.|+|++|.++++
T Consensus        98 ~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l--~~l~~l--~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           98 KIKDLS--SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDI--TVLSRL--TKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CCCCCT--TSTTCTTCCEEECTTSCCCCCG---GGGGCTTCSEEECCSSCCCCC--GGGGSC--TTCSEEECCSSCCCCC
T ss_pred             CCCCCh--hhccCCCCCEEEecCCCCCCCc---cccCCCccCEEECCCCccCCc--hhhccc--CCCCEEECcCCcCCCc
Confidence            666653  4666666777777777666542   366666666666666666655  234444  3355555555555554


Q ss_pred             cCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC
Q psy3330         213 LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP  262 (608)
Q Consensus       213 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~  262 (608)
                      .+  +.. +++|+.|+|++|.++.+  ..+..+++|+.|+|++|++...|
T Consensus       169 ~~--l~~-l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          169 VP--LAG-LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             GG--GTT-CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             hh--hcc-CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence            44  333 55555555555555554  23455555555555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=8e-19  Score=190.71  Aligned_cols=200  Identities=27%  Similarity=0.310  Sum_probs=169.2

Q ss_pred             CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330          73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI  152 (608)
Q Consensus        73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  152 (608)
                      +..+..+.+..+.+..+.+  +..+++|+.|++++|.+..++  .|..+++|+.|+|++|.++++++  +..+++|+.|+
T Consensus        20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            3345556677777776643  567899999999999999886  48899999999999999999866  88999999999


Q ss_pred             ccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCC
Q psy3330         153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN  232 (608)
Q Consensus       153 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  232 (608)
                      |++|.+..++   .+..+++|+.|+|++|++..++.  +..+  ++|+.|+|++|.++++  ..+.. +++|+.|+|++|
T Consensus        94 Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~~--l~~l--~~L~~L~Ls~N~l~~l--~~l~~-l~~L~~L~Ls~N  163 (605)
T 1m9s_A           94 LDENKIKDLS---SLKDLKKLKSLSLEHNGISDING--LVHL--PQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDN  163 (605)
T ss_dssp             CCSSCCCCCT---TSTTCTTCCEEECTTSCCCCCGG--GGGC--TTCSEEECCSSCCCCC--GGGGS-CTTCSEEECCSS
T ss_pred             CcCCCCCCCh---hhccCCCCCEEEecCCCCCCCcc--ccCC--CccCEEECCCCccCCc--hhhcc-cCCCCEEECcCC
Confidence            9999998863   58899999999999999998753  6677  5699999999999987  45665 899999999999


Q ss_pred             CCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCC
Q psy3330         233 IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKS  292 (608)
Q Consensus       233 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~  292 (608)
                      .++++.+  +..+++|+.|+|++|++++++  .+..+++|+.|+|++|++...+...+..
T Consensus       164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~  219 (605)
T 1m9s_A          164 QISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSN  219 (605)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred             cCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCccccccc
Confidence            9998866  889999999999999999985  5899999999999999988766443333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.76  E-value=5.4e-18  Score=153.67  Aligned_cols=118  Identities=22%  Similarity=0.404  Sum_probs=108.1

Q ss_pred             cEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcC
Q psy3330         342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK  421 (608)
Q Consensus       342 ~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~  421 (608)
                      +.+++++|+++.++....   ++|+.|+++. +.++.+.+..|.++++|++|+|++|+ +..+|..+|.++++|+.|+|+
T Consensus        12 ~~l~~s~n~l~~ip~~~~---~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP---TTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccCC---CCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence            789999999999886543   7788999998 89999999999999999999999997 899999999999999999999


Q ss_pred             CCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHhh
Q psy3330         422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQLQ  464 (608)
Q Consensus       422 ~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~~  464 (608)
                      +|+|+.+++..+ .+++|+.|+|++|||.|+|+ +.|+..|++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~  131 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQH  131 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhC
Confidence            999999998755 79999999999999999995 99999999843

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.76  E-value=5.5e-17  Score=168.27  Aligned_cols=322  Identities=18%  Similarity=0.286  Sum_probs=227.6

Q ss_pred             Cccccc-ccccCC-CccEEEeeCCCCcccCcccccccccccEEEccCCC---CCCCChhhhcCCCcCcEeeccCCcCCcc
Q psy3330          63 ISNVHY-TLSFYI-ELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE---ISALSKDTFKGLKELKTLDLSYNKISVI  137 (608)
Q Consensus        63 i~~l~~-~~~~~~-~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~  137 (608)
                      ++.|.. +|.++. .|+.+.+.. .++.|...+|.++.+|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            445554 677774 599999975 5899999999999999999998764   77888899999999999988764 7788


Q ss_pred             ChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCc
Q psy3330         138 NKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSF  217 (608)
Q Consensus       138 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~  217 (608)
                      ...+|.++.+|+.+.+..+ +..+. ...|..+.+|+.+.+..+ +..+...+|..   ..|+.+.+..+ ++.+....|
T Consensus       129 ~~~aF~~c~~L~~i~lp~~-~~~I~-~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~---~~l~~i~ip~~-~~~i~~~af  201 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG-VTSVA-DGMFSYCYSLHTVTLPDS-VTAIEERAFTG---TALTQIHIPAK-VTRIGTNAF  201 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTT---CCCSEEEECTT-CCEECTTTT
T ss_pred             hhhhhhhhcccccccccce-eeeec-ccceecccccccccccce-eeEeccccccc---cceeEEEECCc-ccccccchh
Confidence            8889999999999999754 55555 678999999999998764 67777777765   45888888754 445556677


Q ss_pred             cccCCCccEEEccCCCCCccCccccc-------------CCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCc
Q psy3330         218 PFTLTNLHTLALSSNIISFINESSFV-------------TLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN  284 (608)
Q Consensus       218 ~~~l~~L~~L~L~~n~l~~~~~~~~~-------------~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  284 (608)
                      .. +..++......+....+....+.             ....+..+.+. +.++.+...+|.++..|+.+.+.++ +..
T Consensus       202 ~~-c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~-~~~  278 (394)
T 4gt6_A          202 SE-CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS-VVS  278 (394)
T ss_dssp             TT-CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT-CCE
T ss_pred             hh-ccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccc-cce
Confidence            76 77788777666554433222111             12233333332 2344455566777777777777543 445


Q ss_pred             cChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccccc
Q psy3330         285 IDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFS  364 (608)
Q Consensus       285 ~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~  364 (608)
                      +...+|.++.+|+.+.+                                              .+.++.++..+|.++.+
T Consensus       279 I~~~aF~~c~~L~~i~l----------------------------------------------~~~i~~I~~~aF~~c~~  312 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEF----------------------------------------------SSRITELPESVFAGCIS  312 (394)
T ss_dssp             ECTTTTTTCTTCCEEEC----------------------------------------------CTTCCEECTTTTTTCTT
T ss_pred             ecCcccccccccccccC----------------------------------------------CCcccccCceeecCCCC
Confidence            66677777777766555                                              14456677788888888


Q ss_pred             ccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEcc
Q psy3330         365 LKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLS  444 (608)
Q Consensus       365 L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~  444 (608)
                      |+.+.+.  +.++.|+..+|.+|.+|+.+.+..+  +..|+..+|.++++|+.+++.++....  ..++....|+.+.+.
T Consensus       313 L~~i~lp--~~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          313 LKSIDIP--EGITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVA  386 (394)
T ss_dssp             CCEEECC--TTCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC------
T ss_pred             cCEEEeC--CcccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeC
Confidence            8888886  4688888899999999999999755  888999899999999999998875442  234456778877776


Q ss_pred             CCcc
Q psy3330         445 DNPL  448 (608)
Q Consensus       445 ~N~~  448 (608)
                      .|..
T Consensus       387 ~~~~  390 (394)
T 4gt6_A          387 PGSI  390 (394)
T ss_dssp             ----
T ss_pred             CCCE
Confidence            6543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.75  E-value=1.9e-17  Score=171.72  Aligned_cols=318  Identities=16%  Similarity=0.261  Sum_probs=246.2

Q ss_pred             CCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCch
Q psy3330          85 KINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDS  164 (608)
Q Consensus        85 ~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  164 (608)
                      .++.|...+|.++.+|+.+.|.. .++.|...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +..+. .
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~-~  133 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG-V  133 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC-T
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec-c
Confidence            57889999999999999999974 589999999999999999999865 88888999999999999888754 55665 6


Q ss_pred             hhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccC
Q psy3330         165 EIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVT  244 (608)
Q Consensus       165 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  244 (608)
                      .+|.++..++....  .....+...+|..+  .+|+.+.+.++ +..+....|.+ +.+|+.+.+..+ ++.+...+|.+
T Consensus       134 ~aF~~~~~~~~~~~--~~~~~i~~~aF~~c--~~L~~i~l~~~-~~~I~~~~F~~-c~~L~~i~l~~~-~~~I~~~~F~~  206 (394)
T 4fs7_A          134 EAFKGCDFKEITIP--EGVTVIGDEAFATC--ESLEYVSLPDS-METLHNGLFSG-CGKLKSIKLPRN-LKIIRDYCFAE  206 (394)
T ss_dssp             TTTTTCCCSEEECC--TTCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTT-CTTCCBCCCCTT-CCEECTTTTTT
T ss_pred             eeeecccccccccC--ccccccchhhhccc--CCCcEEecCCc-cceeccccccC-CCCceEEEcCCC-ceEeCchhhcc
Confidence            77888765544433  33455667788888  66999999765 56677888887 999999999876 77788889999


Q ss_pred             CCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhc
Q psy3330         245 LRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLS  324 (608)
Q Consensus       245 l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~  324 (608)
                      +..|+.+.+..+. ..+.. .+....+|+.+.+.. .++.+...+|..+..|+.+.+...  ...+....          
T Consensus       207 ~~~L~~i~~~~~~-~~i~~-~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~----------  271 (394)
T 4fs7_A          207 CILLENMEFPNSL-YYLGD-FALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN--KLRIGGSL----------  271 (394)
T ss_dssp             CTTCCBCCCCTTC-CEECT-TTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT--TCEECSCT----------
T ss_pred             ccccceeecCCCc-eEeeh-hhcccCCCceEEECC-CceecccccccccccceeEEcCCC--cceeeccc----------
Confidence            9999999887653 33332 344557899999864 567888889999999999888421  11110000          


Q ss_pred             cccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCcccccc
Q psy3330         325 LSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQL  404 (608)
Q Consensus       325 ~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~l  404 (608)
                            |    .....++.+....+   .++...|..+.+|+.+.+.  +.++.|+..+|.++.+|+.++|.++  ++.|
T Consensus       272 ------F----~~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I  334 (394)
T 4fs7_A          272 ------F----YNCSGLKKVIYGSV---IVPEKTFYGCSSLTEVKLL--DSVKFIGEEAFESCTSLVSIDLPYL--VEEI  334 (394)
T ss_dssp             ------T----TTCTTCCEEEECSS---EECTTTTTTCTTCCEEEEC--TTCCEECTTTTTTCTTCCEECCCTT--CCEE
T ss_pred             ------c----ccccccceeccCce---eeccccccccccccccccc--cccceechhhhcCCCCCCEEEeCCc--ccEE
Confidence                  0    00112234444433   2566788899999988886  5688999999999999999999765  8999


Q ss_pred             CcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCC
Q psy3330         405 PSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDN  446 (608)
Q Consensus       405 p~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N  446 (608)
                      +..+|.++.+|+.+++..| ++.|+...| .+.+|+.+++..+
T Consensus       335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            9999999999999999877 999998888 5899999998654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=6.3e-19  Score=172.00  Aligned_cols=167  Identities=22%  Similarity=0.303  Sum_probs=93.5

Q ss_pred             cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330          52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY  131 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  131 (608)
                      +++.++++.+.++.++ .+..+++|++|++++|+++.++  .+..+++|++|++++|+++.+++  +.++++|++|++++
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            4555566666666655 4556666666666666666655  45566666666666666666654  66666666666666


Q ss_pred             CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330         132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET  211 (608)
Q Consensus       132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~  211 (608)
                      |+++.+++.  .. ++|++|++++|.+++++   .+..+++|+.|++++|++++++  .+..+  ++|+.|++++|.+++
T Consensus        95 N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~--~l~~l--~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           95 NRLKNLNGI--PS-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIV--MLGFL--SKLEVLDLHGNEITN  164 (263)
T ss_dssp             SCCSCCTTC--CC-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCG--GGGGC--TTCCEEECTTSCCCB
T ss_pred             CccCCcCcc--cc-CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCCh--HHccC--CCCCEEECCCCcCcc
Confidence            666655432  22 56666666666666542   2555666666666666655553  23334  335555555555544


Q ss_pred             ccCCCccccCCCccEEEccCCCCCc
Q psy3330         212 VLDNSFPFTLTNLHTLALSSNIISF  236 (608)
Q Consensus       212 ~~~~~~~~~l~~L~~L~L~~n~l~~  236 (608)
                      .  ..+.. +++|+.|++++|.+..
T Consensus       165 ~--~~l~~-l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          165 T--GGLTR-LKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             C--TTSTT-CCCCCEEEEEEEEEEC
T ss_pred             h--HHhcc-CCCCCEEeCCCCcccC
Confidence            4  23333 4444444444444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=2.7e-17  Score=150.26  Aligned_cols=80  Identities=28%  Similarity=0.456  Sum_probs=69.8

Q ss_pred             hhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHH
Q psy3330         383 AFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWIL  460 (608)
Q Consensus       383 ~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~  460 (608)
                      .|.++++|++|++++|+ ++.+|...|..+++|+.|+|++|+++.+|...+ .+++|++|++++|+|.|+|+ +.|+..|
T Consensus        71 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~  149 (177)
T 2o6r_A           71 VFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  149 (177)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred             HccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHH
Confidence            34556778888888887 888888888999999999999999999998875 58999999999999999997 7899999


Q ss_pred             HHh
Q psy3330         461 VQL  463 (608)
Q Consensus       461 ~~~  463 (608)
                      .+.
T Consensus       150 ~~~  152 (177)
T 2o6r_A          150 LNK  152 (177)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            873

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=2.1e-17  Score=153.93  Aligned_cols=154  Identities=18%  Similarity=0.183  Sum_probs=96.7

Q ss_pred             ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcE
Q psy3330          71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLEL  150 (608)
Q Consensus        71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  150 (608)
                      ..+++|++|++++|.++.++  .+..+++|++|++++|.++.++  .+..+++|++|++++|+++...+..|..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            45566666677666666655  3666666777777766655543  4666667777777777666655556666677777


Q ss_pred             EEccCCCCCccCchhhhcCCCCccEEEccCCC-CCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEc
Q psy3330         151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQ-ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLAL  229 (608)
Q Consensus       151 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  229 (608)
                      |++++|.++... +..+..+++|++|++++|. +..++  .+..+  ++|+.|++++|.++++.  .+.. +++|+.|++
T Consensus       117 L~Ls~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l--~~L~~L~l~~n~i~~~~--~l~~-l~~L~~L~l  188 (197)
T 4ezg_A          117 LDISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM--PLKTL--PELKSLNIQFDGVHDYR--GIED-FPKLNQLYA  188 (197)
T ss_dssp             EECCSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCG--GGGGC--SSCCEEECTTBCCCCCT--TGGG-CSSCCEEEE
T ss_pred             EEecCCccCcHh-HHHHhhCCCCCEEEccCCCCccccH--hhcCC--CCCCEEECCCCCCcChH--Hhcc-CCCCCEEEe
Confidence            777777666644 5566666777777777776 65554  34555  44777777777766653  4444 677777777


Q ss_pred             cCCCCCc
Q psy3330         230 SSNIISF  236 (608)
Q Consensus       230 ~~n~l~~  236 (608)
                      ++|++.+
T Consensus       189 ~~N~i~~  195 (197)
T 4ezg_A          189 FSQTIGG  195 (197)
T ss_dssp             CBC----
T ss_pred             eCcccCC
Confidence            7776643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=4.4e-18  Score=165.95  Aligned_cols=171  Identities=25%  Similarity=0.313  Sum_probs=99.6

Q ss_pred             CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330          73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI  152 (608)
Q Consensus        73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  152 (608)
                      +.++..++++++.+++++  .+..+++|++|++++|.++.++  .+..+++|++|++++|+++++++  +.++++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555556666665554  3555666666666666666554  35555666666666666555543  55555555555


Q ss_pred             ccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCC
Q psy3330         153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSN  232 (608)
Q Consensus       153 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  232 (608)
                      +++|+++.++ +  +.. ++|+                          .|++++|.++++.  .+.. +++|+.|++++|
T Consensus        92 L~~N~l~~l~-~--~~~-~~L~--------------------------~L~L~~N~l~~~~--~l~~-l~~L~~L~Ls~N  138 (263)
T 1xeu_A           92 VNRNRLKNLN-G--IPS-ACLS--------------------------RLFLDNNELRDTD--SLIH-LKNLEILSIRNN  138 (263)
T ss_dssp             CCSSCCSCCT-T--CCC-SSCC--------------------------EEECCSSCCSBSG--GGTT-CTTCCEEECTTS
T ss_pred             CCCCccCCcC-c--ccc-Cccc--------------------------EEEccCCccCCCh--hhcC-cccccEEECCCC
Confidence            5555555543 1  111 4444                          4555555444432  2333 666666666666


Q ss_pred             CCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccC
Q psy3330         233 IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNID  286 (608)
Q Consensus       233 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  286 (608)
                      +++++.  .+..+++|+.|++++|+++++  ..+..+++|+.|++++|+++..+
T Consensus       139 ~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          139 KLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             cCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            666652  466677777777777777766  35667777777777777776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=8.8e-18  Score=156.44  Aligned_cols=150  Identities=17%  Similarity=0.223  Sum_probs=75.9

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      +++++|++++|.++.++ .+..+++|++|++++|.++.++  .+..+++|++|++++|.++...+..|.++++|++|+++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            34555555555555554 4555555555555555444432  34455555555555555554333345555555555555


Q ss_pred             CCcCCccChhhhCCCCCCcEEEccCCC-CCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCC
Q psy3330         131 YNKISVINKTAFRDTLHLELLILSFNN-ITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLI  209 (608)
Q Consensus       131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l  209 (608)
                      +|+++...+..+..+++|++|++++|. +..++   .+..+++|++|++++|.++.++  .+..+  ++|+.|++++|.+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~--~l~~l--~~L~~L~l~~N~i  193 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR--GIEDF--PKLNQLYAFSQTI  193 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT--TGGGC--SSCCEEEECBC--
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH--HhccC--CCCCEEEeeCccc
Confidence            555555444555555555555555554 44432   3455555555555555555544  23344  3355555555554


Q ss_pred             c
Q psy3330         210 E  210 (608)
Q Consensus       210 ~  210 (608)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.71  E-value=5.3e-17  Score=147.61  Aligned_cols=117  Identities=24%  Similarity=0.456  Sum_probs=86.6

Q ss_pred             cCCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCccccccc
Q psy3330          19 KAICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQ   97 (608)
Q Consensus        19 ~~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l   97 (608)
                      +.+||..|.|..  ..++|++..++++|..+++++++|+|++|.++.++ ..|.++++|++|+|++|+|+.+++..|.++
T Consensus         3 ~~~CP~~C~C~~--~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l   80 (174)
T 2r9u_A            3 SAGCPSQCSCDQ--TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL   80 (174)
T ss_dssp             CCSSCTTSEECS--SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCCCCCEECC--cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc
Confidence            568999999954  58999999999999888888888888888777764 356677777777777777777766666666


Q ss_pred             ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCcc
Q psy3330          98 NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVI  137 (608)
Q Consensus        98 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~  137 (608)
                      ++|++|+|++|+|+.+++..|.++++|++|+|++|.+...
T Consensus        81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             chhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            7777777777777666665666666666666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.71  E-value=9.5e-17  Score=145.91  Aligned_cols=118  Identities=19%  Similarity=0.373  Sum_probs=107.5

Q ss_pred             cEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcC
Q psy3330         342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK  421 (608)
Q Consensus       342 ~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~  421 (608)
                      +.+++++|+++.++....   ++|+.|+++. +.++.+.+..|.++++|++|+|++|+ ++.+|...|.++++|+.|+|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP---TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC---TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCCccCCCcC---CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence            689999999999887543   7889999998 88999999999999999999999997 999999989999999999999


Q ss_pred             CCcccccCCCCC-CCCCCCEEEccCCccccccC-ChHHHHHHHhh
Q psy3330         422 GNSLSHLEASHF-PLERISFLDLSDNPLHCDCN-LLWLWILVQLQ  464 (608)
Q Consensus       422 ~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~-~~~~~~~~~~~  464 (608)
                      +|+|+.+|+..+ .+++|+.|+|++|+|.|+|. +.|+..|+...
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~  134 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADH  134 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence            999999998855 69999999999999999996 89999998753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=4.3e-17  Score=147.61  Aligned_cols=143  Identities=20%  Similarity=0.204  Sum_probs=120.0

Q ss_pred             cccCccCccccEEEeccCCCc--ccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCC
Q psy3330          44 VVPIQLNPEVQTIILRENRIS--NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGL  121 (608)
Q Consensus        44 ~ip~~~~~~l~~L~L~~n~i~--~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l  121 (608)
                      .++...++++++|++++|.++  .+|..+..+++|+.|++++|.++.+  ..|..+++|++|++++|.++...+..+..+
T Consensus        17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   94 (168)
T 2ell_A           17 ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL   94 (168)
T ss_dssp             HHTTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred             hhccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence            345556788999999999998  7888888899999999999999888  578889999999999999988666677778


Q ss_pred             CcCcEeeccCCcCCccCh-hhhCCCCCCcEEEccCCCCCccCch---hhhcCCCCccEEEccCCCCCCCCcc
Q psy3330         122 KELKTLDLSYNKISVINK-TAFRDTLHLELLILSFNNITYFEDS---EIFSSLKSLRILKLDNNQILDVPNN  189 (608)
Q Consensus       122 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~  189 (608)
                      ++|++|++++|.++.++. ..+..+++|++|++++|.++..+ +   ..+..+++|++|++++|.+.+++..
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            999999999999988754 67888899999999999988875 4   4788889999999988888777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.70  E-value=5.4e-17  Score=147.03  Aligned_cols=114  Identities=26%  Similarity=0.492  Sum_probs=83.2

Q ss_pred             CCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccc-cccccCCCccEEEeeCCCCcccCccccccccc
Q psy3330          21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQNK   99 (608)
Q Consensus        21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~   99 (608)
                      +||..|.|..  ..++|++..++++|..+++++++|+|++|.|+.++ ..|.++++|++|+|++|+|+.+++..|.++++
T Consensus         2 ~CP~~C~C~~--~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A            2 ACPSQCSCSG--TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             CCC-CCEEET--TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCcCcCCcCC--CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence            6999999964  57999999999999888888888887777777764 35666777777777777777776666666667


Q ss_pred             ccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCc
Q psy3330         100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV  136 (608)
Q Consensus       100 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~  136 (608)
                      |++|+|++|+|+.++++.|.++++|++|+|++|.+..
T Consensus        80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            7777777777666666666666666666666666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.70  E-value=7.9e-16  Score=159.50  Aligned_cols=302  Identities=19%  Similarity=0.304  Sum_probs=234.3

Q ss_pred             CCcccCcccccccc-cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc---CCccChhhhCCCCCCcEEEccCCCCCc
Q psy3330          85 KINVLGSHNFEYQN-KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK---ISVINKTAFRDTLHLELLILSFNNITY  160 (608)
Q Consensus        85 ~l~~i~~~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~  160 (608)
                      .++.|...+|.++. .|+.+.+.. .++.|...+|.++.+|+.+.+..|.   ++.+...+|.++.+|+.+.+..+ +..
T Consensus        50 ~Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           50 PVSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             eeeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence            46788999999885 699999975 5899999999999999999998764   88888899999999999888754 666


Q ss_pred             cCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcc
Q psy3330         161 FEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINES  240 (608)
Q Consensus       161 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  240 (608)
                      +. ..+|..+.+|+.+.+.. .+..+...+|...  ..|+.+.+..+ ++.+...+|..  ..|+.+.+..+ +..+...
T Consensus       128 I~-~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c--~~L~~i~~~~~-~~~I~~~aF~~--~~l~~i~ip~~-~~~i~~~  199 (394)
T 4gt6_A          128 ID-SEAFHHCEELDTVTIPE-GVTSVADGMFSYC--YSLHTVTLPDS-VTAIEERAFTG--TALTQIHIPAK-VTRIGTN  199 (394)
T ss_dssp             EC-TTTTTTCTTCCEEECCT-TCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTT--CCCSEEEECTT-CCEECTT
T ss_pred             eh-hhhhhhhcccccccccc-eeeeecccceecc--cccccccccce-eeEeccccccc--cceeEEEECCc-ccccccc
Confidence            66 77899999999999964 4667777778777  55888888754 66677777763  67888888754 4456667


Q ss_pred             cccCCCccCEEeccCCcCCCCChhhhh-------------CCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCC
Q psy3330         241 SFVTLRTLHSLDLSNNNLSAIPTKQLS-------------KLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL  307 (608)
Q Consensus       241 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~-------------~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l  307 (608)
                      +|.++.+++......+....+....+.             ....+..+.+. +.++.+...+|.++.+|+.+.+.     
T Consensus       200 af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp-----  273 (394)
T 4gt6_A          200 AFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMP-----  273 (394)
T ss_dssp             TTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECC-----
T ss_pred             hhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecc-----
Confidence            788888888887766655443321111             12234444443 34556666777777777766662     


Q ss_pred             CCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCC
Q psy3330         308 DSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN  387 (608)
Q Consensus       308 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l  387 (608)
                                                               +.+..+...+|.++.+|+.+.+.  +.++.|+..+|.++
T Consensus       274 -----------------------------------------~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c  310 (394)
T 4gt6_A          274 -----------------------------------------DSVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGC  310 (394)
T ss_dssp             -----------------------------------------TTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTC
T ss_pred             -----------------------------------------cccceecCcccccccccccccCC--CcccccCceeecCC
Confidence                                                     23345667788899999988886  67889999999999


Q ss_pred             cccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCcc
Q psy3330         388 IQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPL  448 (608)
Q Consensus       388 ~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~  448 (608)
                      .+|+.+.|.++  ++.|+..+|.++.+|+.+.|..+ ++.|+...| .+.+|+.+++.+|..
T Consensus       311 ~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          311 ISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            99999999875  89999999999999999999654 899998887 689999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.5e-19  Score=195.27  Aligned_cols=204  Identities=24%  Similarity=0.264  Sum_probs=127.9

Q ss_pred             ccCCCccEEEeeCCCCcccCcccccccccccEEEccCCC-------------CCCCChhhhcCCCcCcEee-ccCCcCCc
Q psy3330          71 SFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE-------------ISALSKDTFKGLKELKTLD-LSYNKISV  136 (608)
Q Consensus        71 ~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~-Ls~n~l~~  136 (608)
                      ..+++|+.|+|++|+++.+|. .++++++|+.|++++|.             +.+..+..++++++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            567788888888888887765 67788888888886653             4455556677777777777 56554432


Q ss_pred             cChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCC
Q psy3330         137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNS  216 (608)
Q Consensus       137 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~  216 (608)
                      +           +.+.+++|.+..++ +      ..|+.|++++|+++++|.  +..+  ++|+.|++++|.++.+ |..
T Consensus       425 L-----------~~l~l~~n~i~~l~-~------~~L~~L~Ls~n~l~~lp~--~~~l--~~L~~L~Ls~N~l~~l-p~~  481 (567)
T 1dce_A          425 L-----------RSKFLLENSVLKME-Y------ADVRVLHLAHKDLTVLCH--LEQL--LLVTHLDLSHNRLRAL-PPA  481 (567)
T ss_dssp             H-----------HHHHHHHHHHHHHH-H------TTCSEEECTTSCCSSCCC--GGGG--TTCCEEECCSSCCCCC-CGG
T ss_pred             h-----------hhhhhhcccccccC-c------cCceEEEecCCCCCCCcC--cccc--ccCcEeecCccccccc-chh
Confidence            2           22233333333322 1      135555555555555543  4444  3366666666666543 234


Q ss_pred             ccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC-hhhhhCCCCCCEEeccCCCCCccChh---hhCC
Q psy3330         217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP-TKQLSKLSALVNLDLSGNNFSNIDSV---AFKS  292 (608)
Q Consensus       217 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~f~~  292 (608)
                      +.. +++|+.|++++|.++++ | .+.++++|+.|+|++|++++++ |..+..+++|+.|+|++|+++++++.   .+..
T Consensus       482 ~~~-l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~  558 (567)
T 1dce_A          482 LAA-LRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM  558 (567)
T ss_dssp             GGG-CTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred             hhc-CCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence            554 67777777777777765 3 5677777777777777777774 56677777777777777777776553   2344


Q ss_pred             CCCCceeec
Q psy3330         293 LFSLKLVKI  301 (608)
Q Consensus       293 l~~L~~L~l  301 (608)
                      +++|+.|++
T Consensus       559 lp~L~~L~l  567 (567)
T 1dce_A          559 LPSVSSILT  567 (567)
T ss_dssp             CTTCSEEEC
T ss_pred             CcccCccCC
Confidence            667776653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=2.7e-19  Score=193.23  Aligned_cols=201  Identities=18%  Similarity=0.219  Sum_probs=126.6

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCC-------------CcccCcccccccccccEEE-ccCCCCCCCChh
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNK-------------INVLGSHNFEYQNKLLNLN-ISYNEISALSKD  116 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~-------------l~~i~~~~f~~l~~L~~L~-Ls~n~i~~~~~~  116 (608)
                      ++++.|+|++|.++.+|..++++++|+.|++++|.             +....+..++.+++|+.|+ ++.|.+      
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~------  422 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL------  422 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH------
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc------
Confidence            45666777777777777777777777777765543             3344445566666666666 444422      


Q ss_pred             hhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCC
Q psy3330         117 TFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPH  196 (608)
Q Consensus       117 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  196 (608)
                           .+|+.+.+++|.++.+++.      .|+.|++++|.+++++  . |+.+++|+.|++++|.++.+|. .+..+  
T Consensus       423 -----~~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~lp--~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l--  485 (567)
T 1dce_A          423 -----DDLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTVLC--H-LEQLLLVTHLDLSHNRLRALPP-ALAAL--  485 (567)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSSCC--C-GGGGTTCCEEECCSSCCCCCCG-GGGGC--
T ss_pred             -----chhhhhhhhcccccccCcc------CceEEEecCCCCCCCc--C-ccccccCcEeecCcccccccch-hhhcC--
Confidence                 2455555666666555331      3667777777777653  3 6667777777777777776654 45556  


Q ss_pred             CCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccC-cccccCCCccCEEeccCCcCCCCChh---hhhCCCCC
Q psy3330         197 QSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN-ESSFVTLRTLHSLDLSNNNLSAIPTK---QLSKLSAL  272 (608)
Q Consensus       197 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~---~~~~l~~L  272 (608)
                      ++|+.|++++|.+++++  .+.. +++|+.|++++|.++++. |..+.++++|+.|+|++|.++++|+.   .+..+++|
T Consensus       486 ~~L~~L~Ls~N~l~~lp--~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L  562 (567)
T 1dce_A          486 RCLEVLQASDNALENVD--GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  562 (567)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             CCCCEEECCCCCCCCCc--ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence            44777777777777653  4554 677777777777777665 66677777777777777777666542   23446677


Q ss_pred             CEEec
Q psy3330         273 VNLDL  277 (608)
Q Consensus       273 ~~L~L  277 (608)
                      +.|++
T Consensus       563 ~~L~l  567 (567)
T 1dce_A          563 SSILT  567 (567)
T ss_dssp             SEEEC
T ss_pred             CccCC
Confidence            76653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.65  E-value=5.8e-16  Score=157.74  Aligned_cols=119  Identities=22%  Similarity=0.291  Sum_probs=109.7

Q ss_pred             cEEecCCC-CCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEc
Q psy3330         342 DRLDLSGN-NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL  420 (608)
Q Consensus       342 ~~L~ls~n-~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L  420 (608)
                      ..++++++ +++++|.  +..+++|+.|+++..|.++.+.+..|.++++|+.|+|++|+ +..+++.+|.++++|+.|+|
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence            45788998 9999887  99999999999986689999999999999999999999997 88898888999999999999


Q ss_pred             CCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHh
Q psy3330         421 KGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQL  463 (608)
Q Consensus       421 ~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~  463 (608)
                      ++|+|+.+|+..+....|+.|+|++|+|.|||++.||..|.+.
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~  130 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE  130 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHT
T ss_pred             CCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHh
Confidence            9999999999988655599999999999999999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=8e-17  Score=179.40  Aligned_cols=219  Identities=18%  Similarity=0.159  Sum_probs=107.0

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEE-----EeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSL-----DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELK  125 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L-----~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  125 (608)
                      +.++.|+|.+|.+..++..+.....|+.+     +++.|.+. +++..|..++.|+.|+|++|.+..++...+ ++++|+
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~  250 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCS
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCC
Confidence            45788888888888766544333333322     23333333 456678888889999999998888876544 788899


Q ss_pred             EeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEcc
Q psy3330         126 TLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLN  205 (608)
Q Consensus       126 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~  205 (608)
                      +|+|++|.|+.+ |..|.++++|++|+|++|.++.+  |..|.++++|++|+|++|.++.+|.. |..+  ++|+.|+|+
T Consensus       251 ~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l--~~L~~L~L~  324 (727)
T 4b8c_D          251 RLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSL--PAELGSCFQLKYFYFFDNMVTTLPWE-FGNL--CNLQFLGVE  324 (727)
T ss_dssp             CCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSC--CSSGGGGTTCSEEECCSSCCCCCCSS-TTSC--TTCCCEECT
T ss_pred             EEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCcc--ChhhcCCCCCCEEECCCCCCCccChh-hhcC--CCccEEeCC
Confidence            999999988866 46678888899999999988866  56688888899999998888888765 7777  558888888


Q ss_pred             CCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCC--------cCCCCChhhhhCCCCCCEEec
Q psy3330         206 ENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN--------NLSAIPTKQLSKLSALVNLDL  277 (608)
Q Consensus       206 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~l~~~~~~~l~~L~~L~L  277 (608)
                      +|.+++..+..+.........+++++|.+++..|.      .|+.|+++.|        .+....+..+..+..+....+
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  398 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVL  398 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------------------------------------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeee
Confidence            88888776666543111122356777777665443      4455566655        233333333444444555555


Q ss_pred             cCCCCC
Q psy3330         278 SGNNFS  283 (608)
Q Consensus       278 s~N~l~  283 (608)
                      ++|-+.
T Consensus       399 s~Nil~  404 (727)
T 4b8c_D          399 SYNTLC  404 (727)
T ss_dssp             ---CCC
T ss_pred             eccccc
Confidence            555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=6e-16  Score=136.97  Aligned_cols=128  Identities=23%  Similarity=0.217  Sum_probs=102.3

Q ss_pred             cCccccEEEeccCCCc--ccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcE
Q psy3330          49 LNPEVQTIILRENRIS--NVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKT  126 (608)
Q Consensus        49 ~~~~l~~L~L~~n~i~--~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  126 (608)
                      .++++++|++++|.++  .+|..+..+++|++|++++|.++.+  ..|..+++|++|++++|.++...+..+.++++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            4577888888888888  6777778888888888888888877  56788888888888888888866667777888888


Q ss_pred             eeccCCcCCccC-hhhhCCCCCCcEEEccCCCCCccCch---hhhcCCCCccEEEcc
Q psy3330         127 LDLSYNKISVIN-KTAFRDTLHLELLILSFNNITYFEDS---EIFSSLKSLRILKLD  179 (608)
Q Consensus       127 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~  179 (608)
                      |++++|.+++++ +..+..+++|++|++++|.+++.+ +   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST-THHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH-HHHHHHHHHCCCcccccCC
Confidence            888888888764 367788888888888888887775 3   467788888888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.7e-15  Score=136.94  Aligned_cols=138  Identities=22%  Similarity=0.149  Sum_probs=111.5

Q ss_pred             ccCCCccEEEeeCCCCc--ccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCC
Q psy3330          71 SFYIELRSLDLSVNKIN--VLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHL  148 (608)
Q Consensus        71 ~~~~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  148 (608)
                      ...++|+.|++++|.++  .++. .+..+++|++|++++|.++.+  ..|..+++|++|++++|+++...+..+..+++|
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             CCcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            34578999999999998  6654 578899999999999999888  568889999999999999988667777778999


Q ss_pred             cEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCc---ccccCCCCCCceEEEccCCCCcccc
Q psy3330         149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NVLSNLPHQSLHYLYLNENLIETVL  213 (608)
Q Consensus       149 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~~~L~~L~L~~n~l~~~~  213 (608)
                      ++|++++|.++.++....+..+++|++|++++|.++.+++   ..+..+  ++|+.|++++|.+..++
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL--PQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC--SSCCEETTEETTSCBCC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC--ccCcEecCCCCChhhcc
Confidence            9999999999887534678888889999998888888776   456666  44777777777666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.60  E-value=8e-14  Score=143.68  Aligned_cols=297  Identities=14%  Similarity=0.262  Sum_probs=149.2

Q ss_pred             cCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEE
Q psy3330          72 FYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL  151 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  151 (608)
                      ...+|+.+.+. ..++.|+..+|.++.+|+.++|.. .++.|...+|.++ +|+.+.+.. +++.+...+|.+. +|+.+
T Consensus        44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i  118 (379)
T 4h09_A           44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDF  118 (379)
T ss_dssp             GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEE
T ss_pred             cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Ccccc
Confidence            34455555553 245555555555555566555543 3555555555554 455555443 2445555555443 45555


Q ss_pred             EccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcccc------------CCCccc
Q psy3330         152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVL------------DNSFPF  219 (608)
Q Consensus       152 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~------------~~~~~~  219 (608)
                      .+..+ +..+. ...|.+. +|+.+.+.. .++.+...++...  ..++.+.+..+......            ...+..
T Consensus       119 ~lp~~-~~~i~-~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          119 EFPGA-TTEIG-NYIFYNS-SVKRIVIPK-SVTTIKDGIGYKA--ENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             ECCTT-CCEEC-TTTTTTC-CCCEEEECT-TCCEECSCTTTTC--TTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             cCCCc-ccccc-ccccccc-eeeeeeccc-eeeccccchhccc--ccccccccccccceeecccceecccccceeccccc
Confidence            55443 22332 3334433 333333322 2333334444333  22444443332211111            011222


Q ss_pred             cCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCcee
Q psy3330         220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLV  299 (608)
Q Consensus       220 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L  299 (608)
                       ...+..+.+... ...+....+....+|+.+.+..+ ++.+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus       193 -~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i  268 (379)
T 4h09_A          193 -AKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL  268 (379)
T ss_dssp             -TCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             -cccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence             334444444332 22334455566666666666543 55566666667777777777654 666666667666666665


Q ss_pred             eccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcC
Q psy3330         300 KINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSI  379 (608)
Q Consensus       300 ~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~  379 (608)
                      .+.                                              +.+..++..+|.++++|+.+.+.. +.++.|
T Consensus       269 ~l~----------------------------------------------~~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I  301 (379)
T 4h09_A          269 NFY----------------------------------------------AKVKTVPYLLCSGCSNLTKVVMDN-SAIETL  301 (379)
T ss_dssp             EEC----------------------------------------------CCCSEECTTTTTTCTTCCEEEECC-TTCCEE
T ss_pred             ccc----------------------------------------------ccceeccccccccccccccccccc-ccccee
Confidence            551                                              123334444555555555555543 345555


Q ss_pred             ChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCC
Q psy3330         380 DQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHF  433 (608)
Q Consensus       380 ~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~  433 (608)
                      +..+|.++.+|+.+.|..+  ++.|+..+|.++.+|+.+.+..+ ++.|....|
T Consensus       302 ~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          302 EPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             hhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence            6666666666666666543  56666666666666666666443 555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.59  E-value=1.2e-13  Score=142.30  Aligned_cols=300  Identities=15%  Similarity=0.270  Sum_probs=225.5

Q ss_pred             ccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330          51 PEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL  129 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  129 (608)
                      .+++.+.+.. .++.|+. +|.++.+|+.++|.. .++.|+..+|.++ +|+.+.+.. .++.+...+|.+. +|+.+.+
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i~l  120 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDFEF  120 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEEEC
T ss_pred             cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-CcccccC
Confidence            4688888763 4777765 899999999999974 5999999999998 688888864 5888888899875 8999999


Q ss_pred             cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcc------------cccCCCCC
Q psy3330         130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNN------------VLSNLPHQ  197 (608)
Q Consensus       130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~~  197 (608)
                      ..+ +..+...+|.+. +|+.+.+..+ ++.+. ...|..+.+++.+.+..+........            .+...  .
T Consensus       121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~-~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  194 (379)
T 4h09_A          121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIK-DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA--K  194 (379)
T ss_dssp             CTT-CCEECTTTTTTC-CCCEEEECTT-CCEEC-SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT--C
T ss_pred             CCc-cccccccccccc-eeeeeeccce-eeccc-cchhcccccccccccccccceeecccceecccccceecccccc--c
Confidence            875 666777788775 6777777654 55555 67788899999888776543221111            11111  2


Q ss_pred             CceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEec
Q psy3330         198 SLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDL  277 (608)
Q Consensus       198 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~L  277 (608)
                      .+..+.+.. ....+....+.. ..+++.+.+..+ +..+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+
T Consensus       195 ~~~~~~~~~-~~~~i~~~~f~~-~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l  270 (379)
T 4h09_A          195 TGTEFTIPS-TVKTVTAYGFSY-GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF  270 (379)
T ss_dssp             CCSEEECCT-TCCEECTTTTTT-CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccc-ceeEEeeccccc-ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence            344444433 233344455655 778888888654 56677788889999999998765 88888888999999999998


Q ss_pred             cCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChh
Q psy3330         278 SGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSV  357 (608)
Q Consensus       278 s~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~  357 (608)
                      .. .++.+...+|.++.+|+.+.+                                             .++.++.+...
T Consensus       271 ~~-~i~~i~~~aF~~c~~L~~i~l---------------------------------------------~~~~i~~I~~~  304 (379)
T 4h09_A          271 YA-KVKTVPYLLCSGCSNLTKVVM---------------------------------------------DNSAIETLEPR  304 (379)
T ss_dssp             CC-CCSEECTTTTTTCTTCCEEEE---------------------------------------------CCTTCCEECTT
T ss_pred             cc-cceeccccccccccccccccc---------------------------------------------cccccceehhh
Confidence            65 588888888998888876655                                             45667778888


Q ss_pred             hhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCC
Q psy3330         358 AFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNL  415 (608)
Q Consensus       358 ~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L  415 (608)
                      +|.++.+|+.+.+.  +.++.|+..+|.+|.+|+.+.+..+  +..|...+|.++..+
T Consensus       305 aF~~c~~L~~i~lp--~~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          305 VFMDCVKLSSVTLP--TALKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSSIT  358 (379)
T ss_dssp             TTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSSCC
T ss_pred             hhcCCCCCCEEEcC--ccccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCCCC
Confidence            88889999888886  4688899999999999999999765  888999999877543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=2.7e-15  Score=136.80  Aligned_cols=130  Identities=18%  Similarity=0.252  Sum_probs=72.1

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      .++++|++++|.++.++......++|++|++++|.++++  ..|..+++|++|++++|.++.+++..|.++++|++|+++
T Consensus        19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            456666666666665543222233666666666666655  345556666666666666666555555556666666666


Q ss_pred             CCcCCccCh-hhhCCCCCCcEEEccCCCCCccCchh---hhcCCCCccEEEccCCCC
Q psy3330         131 YNKISVINK-TAFRDTLHLELLILSFNNITYFEDSE---IFSSLKSLRILKLDNNQI  183 (608)
Q Consensus       131 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l  183 (608)
                      +|.++.++. ..+..+++|+.|++++|.+...+ ..   .+..+++|+.|+++.|..
T Consensus        97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~-~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEETTEECCH
T ss_pred             CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH-hHHHHHHHHCCccceeCCCcCCH
Confidence            666655543 34555566666666666555442 11   355555555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=5.6e-16  Score=172.57  Aligned_cols=187  Identities=22%  Similarity=0.221  Sum_probs=110.2

Q ss_pred             CCccEEEeeCCCCcccCcccccccccccEEEccCCCCCC---------CChhhhcCCCcCcEeeccCCcCCccChhhhCC
Q psy3330          74 IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA---------LSKDTFKGLKELKTLDLSYNKISVINKTAFRD  144 (608)
Q Consensus        74 ~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  144 (608)
                      ++++.|+|.+|.+..++...      |+.++|+.|.|..         ++++.|..++.|+.|+|++|.+..+++..+ .
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~------l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQAL------LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-K  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-G
T ss_pred             CccceEEeeCCCCCcchhhH------hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-C
Confidence            56788999999888765532      3334444443332         446778899999999999999998866555 7


Q ss_pred             CCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCc
Q psy3330         145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNL  224 (608)
Q Consensus       145 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L  224 (608)
                      +++|++|+|++|.++.+  |..|.++++|++|+|++|.++.+|.. +..+  .+|++|+|++|.++.++. .|.. +++|
T Consensus       246 l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l--~~L~~L~L~~N~l~~lp~-~~~~-l~~L  318 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLTEL--PAEIKNLSNLRVLDLSHNRLTSLPAE-LGSC--FQLKYFYFFDNMVTTLPW-EFGN-LCNL  318 (727)
T ss_dssp             CCSCSCCBCTTSCCSCC--CGGGGGGTTCCEEECTTSCCSSCCSS-GGGG--TTCSEEECCSSCCCCCCS-STTS-CTTC
T ss_pred             CCCCCEEEeeCCcCccc--ChhhhCCCCCCEEeCcCCcCCccChh-hcCC--CCCCEEECCCCCCCccCh-hhhc-CCCc
Confidence            89999999999999966  56789999999999999999988654 6677  569999999999987654 4776 8999


Q ss_pred             cEEEccCCCCCccCcccccCCC-ccCEEeccCCcCCCCChhhhhCCCCCCEEeccCC
Q psy3330         225 HTLALSSNIISFINESSFVTLR-TLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGN  280 (608)
Q Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N  280 (608)
                      +.|+|++|.+++..+..+..+. .+..++|++|.+++..+      ..|+.|+++.|
T Consensus       319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence            9999999999887777665432 22347788888877554      35667777776

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=5.7e-15  Score=130.60  Aligned_cols=129  Identities=25%  Similarity=0.230  Sum_probs=99.1

Q ss_pred             cCCCccEEEeeCCCCc--ccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCc
Q psy3330          72 FYIELRSLDLSVNKIN--VLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLE  149 (608)
Q Consensus        72 ~~~~L~~L~Ls~n~l~--~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  149 (608)
                      ..++|+.|++++|.++  .++. .+..+++|++|++++|.++.+  ..|..+++|++|++++|.+++..+..+.++++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            3467888899988888  5554 678888888888888888887  5688888888888888888886677777788888


Q ss_pred             EEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCc---ccccCCCCCCceEEEcc
Q psy3330         150 LLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NVLSNLPHQSLHYLYLN  205 (608)
Q Consensus       150 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~~~L~~L~L~  205 (608)
                      +|++++|.+++++.+..+..+++|++|++++|.++.+++   ..+..+  ++|+.|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL--PQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC--TTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC--CCcccccCC
Confidence            888888888876434678888888888888888877766   455555  346666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=6.6e-15  Score=134.17  Aligned_cols=136  Identities=27%  Similarity=0.313  Sum_probs=97.5

Q ss_pred             ccccCCCccEEEeeCCCCcccCccccccc-ccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCC
Q psy3330          69 TLSFYIELRSLDLSVNKINVLGSHNFEYQ-NKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLH  147 (608)
Q Consensus        69 ~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  147 (608)
                      .+.++.+|+.|++++|+++.++.  +..+ ++|++|++++|.++.+  ..|.++++|++|++++|.++.+++..|..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            45677888888888888887742  4444 4888888888888877  35788888888888888888887666777888


Q ss_pred             CcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcc---cccCCCCCCceEEEccCCCCc
Q psy3330         148 LELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNN---VLSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       148 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~~~L~~L~L~~n~l~  210 (608)
                      |++|++++|.+..++....+..+++|+.|++++|.+..++..   .+..+  ++|+.|++++|.+.
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l--~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV--PQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC--TTCSEETTEECCHH
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC--CccceeCCCcCCHH
Confidence            888888888887764223677778888888888877766553   34444  33555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.51  E-value=1.7e-14  Score=123.41  Aligned_cols=102  Identities=25%  Similarity=0.459  Sum_probs=84.9

Q ss_pred             eeecccCcccc--ccCcccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccc
Q psy3330         392 TVIINENMNLK--QLPSKLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKST  468 (608)
Q Consensus       392 ~L~Ls~N~~l~--~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~  468 (608)
                      .++.+++. ++  .+|.+ +  .++|+.|+|++|+|+.||.+.+ .+++|+.|+|++|||.|||.+.||..|++....  
T Consensus        12 ~v~Cs~~~-L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~--   85 (130)
T 3rfe_A           12 LVDCGRRG-LTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPE--   85 (130)
T ss_dssp             EEECCSSC-CCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSC--
T ss_pred             EEEeCCCC-CccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcc--
Confidence            67777876 77  89976 2  3579999999999999999987 589999999999999999999999999983210  


Q ss_pred             cccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccC
Q psy3330         469 METTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCE  536 (608)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~  536 (608)
                                                           ......++|++|+.++|+.+.++..+++.|.
T Consensus        86 -------------------------------------~~~~~~~~C~~P~~l~g~~l~~l~~~~l~c~  116 (130)
T 3rfe_A           86 -------------------------------------RAPYRDLRCVAPPALRGRLLPYLAEDELRAA  116 (130)
T ss_dssp             -------------------------------------SGGGTTCBCCBSTTTTTCBGGGCCHHHHHHT
T ss_pred             -------------------------------------cccccCcEeCcChHHcCCCcccCCHHHhhCc
Confidence                                                 0113478999999999999999998888753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.48  E-value=9.1e-14  Score=141.43  Aligned_cols=115  Identities=23%  Similarity=0.297  Sum_probs=73.5

Q ss_pred             CCCCc-eecCCceEEEecCC-CCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeC-CCCcccCcccccccc
Q psy3330          22 CPSRC-QCFDQKLEASCTDA-GLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSV-NKINVLGSHNFEYQN   98 (608)
Q Consensus        22 Cp~~C-~c~~~~~~v~C~~~-~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~-n~l~~i~~~~f~~l~   98 (608)
                      ||..| .|..  ..|+|++. +++.+|. ++                     .+++|+.|+|++ |.|+.+++..|.+++
T Consensus         1 cp~~c~~C~~--~~v~~~~~n~l~~ip~-l~---------------------~~~~L~~L~l~~~n~l~~~~~~~~~~l~   56 (347)
T 2ifg_A            1 CPDACCPHGS--SGLRCTRDGALDSLHH-LP---------------------GAENLTELYIENQQHLQHLELRDLRGLG   56 (347)
T ss_dssp             CCSSSCCSSS--SCEECCSSCCCTTTTT-SC---------------------SCSCCSEEECCSCSSCCEECGGGSCSCC
T ss_pred             CCCcCccccC--CEEEcCCCCCCCccCC-CC---------------------CCCCeeEEEccCCCCCCCcChhHhcccc
Confidence            99999 9954  46899888 7877776 44                     344555556654 556666655566666


Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCcc
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYF  161 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  161 (608)
                      +|++|+|++|+|+++++.+|.++++|++|+|++|+|+.+++..|..+. |+.|+|.+|.+...
T Consensus        57 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            666666666666666665666666666666666666666555555544 66666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=7.8e-15  Score=136.48  Aligned_cols=130  Identities=25%  Similarity=0.313  Sum_probs=91.8

Q ss_pred             cccEEEeccC--CCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeec
Q psy3330          52 EVQTIILREN--RISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDL  129 (608)
Q Consensus        52 ~l~~L~L~~n--~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  129 (608)
                      .++...+.+.  .++.+|..+..+++|++|++++|.++.++  .+.++++|++|++++|.++.++. .+..+++|++|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L  100 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWI  100 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEEC
Confidence            3444445443  45555567778888888888888887766  67778888888888888877653 5566677888888


Q ss_pred             cCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330         130 SYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV  186 (608)
Q Consensus       130 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  186 (608)
                      ++|++++++  .+..+++|++|++++|.++.++....+..+++|++|++++|.+...
T Consensus       101 ~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          101 SYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            888887763  4667777888888888877764224577777777777777766543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=6.8e-15  Score=136.89  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=17.3

Q ss_pred             ccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCc
Q psy3330          94 FEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV  136 (608)
Q Consensus        94 f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~  136 (608)
                      |..+++|++|++++|.++.++  .+.++++|++|++++|.++.
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~   84 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK   84 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS
T ss_pred             HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc
Confidence            344444444444444444433  33344444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=9.7e-13  Score=134.42  Aligned_cols=188  Identities=19%  Similarity=0.126  Sum_probs=90.6

Q ss_pred             CCCccEEEeeCCCCcccCccccccc-----ccccEEEccCCCCCCCChhhh-cCCCcCcEeeccCCcCCccChhhh----
Q psy3330          73 YIELRSLDLSVNKINVLGSHNFEYQ-----NKLLNLNISYNEISALSKDTF-KGLKELKTLDLSYNKISVINKTAF----  142 (608)
Q Consensus        73 ~~~L~~L~Ls~n~l~~i~~~~f~~l-----~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~----  142 (608)
                      .++|+.|+|++|.++......+...     ++|++|+|++|.++......+ ..+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3456666666666665443333322     466666666666653322222 234456666666666654433333    


Q ss_pred             -CCCCCCcEEEccCCCCCccCc---hhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCcc
Q psy3330         143 -RDTLHLELLILSFNNITYFED---SEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP  218 (608)
Q Consensus       143 -~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  218 (608)
                       ...++|++|+|++|.++....   ...+...++|++|+|++|.+.......+                      ...+.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L----------------------~~~L~  208 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL----------------------AAQLD  208 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH----------------------HHHGG
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH----------------------HHHHh
Confidence             234556666666666544220   1223445555555555555443211100                      11222


Q ss_pred             ccCCCccEEEccCCCCCccCc----ccccCCCccCEEeccCCcCCCCChhhhhCCCC-----CCEEe--ccCCCCC
Q psy3330         219 FTLTNLHTLALSSNIISFINE----SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSA-----LVNLD--LSGNNFS  283 (608)
Q Consensus       219 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~-----L~~L~--Ls~N~l~  283 (608)
                      . .++|+.|++++|.++....    ..+...++|++|+|++|.++......+..+..     |+.+.  +..+.+.
T Consensus       209 ~-~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          209 R-NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             G-CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             c-CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            2 4456666666666654221    22334567777777777776544444443321     45555  4444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.16  E-value=1.8e-12  Score=132.46  Aligned_cols=96  Identities=17%  Similarity=0.132  Sum_probs=65.2

Q ss_pred             CCceEEEccCCCCccccCC----CccccCCCccEEEccCCCCCccC----cccccCCCccCEEeccCCcCCCCCh----h
Q psy3330         197 QSLHYLYLNENLIETVLDN----SFPFTLTNLHTLALSSNIISFIN----ESSFVTLRTLHSLDLSNNNLSAIPT----K  264 (608)
Q Consensus       197 ~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~----~  264 (608)
                      ++|+.|++++|.++.....    .+.. .++|++|+|++|.++...    ...+...++|++|+|++|.++....    .
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            3355666666655432211    2233 667888888888876532    3456677899999999999986432    3


Q ss_pred             hhhCCCCCCEEeccCCCCCccChhhhCCC
Q psy3330         265 QLSKLSALVNLDLSGNNFSNIDSVAFKSL  293 (608)
Q Consensus       265 ~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l  293 (608)
                      .+...++|++|+|++|.++......+..+
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             HHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence            45667999999999999987666555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.72  E-value=2e-08  Score=85.46  Aligned_cols=64  Identities=23%  Similarity=0.480  Sum_probs=50.9

Q ss_pred             CCCCCceecCCceEEEecCCCCc--cccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCC
Q psy3330          21 ICPSRCQCFDQKLEASCTDAGLE--VVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKI   86 (608)
Q Consensus        21 ~Cp~~C~c~~~~~~v~C~~~~l~--~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l   86 (608)
                      +||..|.|..  ..|+|++.+++  .+|..+|+++++|+|++|+|+.++. .|..+++|+.|+|++|.+
T Consensus         1 ~CP~~C~C~~--~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A            1 PCPAPCSCAG--TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CCCTTCEEET--TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CcCCCCEEcC--CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5999999974  48999999999  9999999988888888888877765 455666666666666644

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=1.6e-08  Score=102.25  Aligned_cols=58  Identities=19%  Similarity=0.092  Sum_probs=26.7

Q ss_pred             hcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhc--CCCCccEEEcc
Q psy3330         118 FKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFS--SLKSLRILKLD  179 (608)
Q Consensus       118 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~  179 (608)
                      +..+++|+.|+|++|.-..+++  +. +++|+.|++..+.+.... ...+.  .+++|+.|+|+
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEE
T ss_pred             HhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEe
Confidence            3445555555555542111211  22 455666666655544322 12222  45666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.35  E-value=4.6e-07  Score=91.55  Aligned_cols=180  Identities=16%  Similarity=0.162  Sum_probs=96.9

Q ss_pred             cccccCCCccEEEeeCCCCc-----cc----CcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccC
Q psy3330          68 YTLSFYIELRSLDLSVNKIN-----VL----GSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN  138 (608)
Q Consensus        68 ~~~~~~~~L~~L~Ls~n~l~-----~i----~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  138 (608)
                      .+...+++|+.|.+......     .+    ....+..+|+|+.|.|++|.-..+++  +. +++|++|+|..+.+..-.
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHH
Confidence            34455666666666544221     11    11233456677777776663122322  32 667777777776665332


Q ss_pred             hhhhC--CCCCCcEEEccC--CC------CCccCchhhh--cCCCCccEEEccCCCCCCCCccccc---CCCCCCceEEE
Q psy3330         139 KTAFR--DTLHLELLILSF--NN------ITYFEDSEIF--SSLKSLRILKLDNNQILDVPNNVLS---NLPHQSLHYLY  203 (608)
Q Consensus       139 ~~~~~--~l~~L~~L~L~~--n~------l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~~~L~~L~  203 (608)
                      ...+.  .+++|+.|+|+.  |.      +..+.  ..+  ..+++|++|++.+|.+.......+.   .+  ++|+.|+
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~--~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~--~~L~~Ld  285 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR--PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL--PQLETMD  285 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG--GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG--GGCSEEE
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHH--HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC--CCCCEEE
Confidence            23332  567777777642  11      11111  112  2467788888877776531111111   23  4588888


Q ss_pred             ccCCCCccccC----CCccccCCCccEEEccCCCCCccCcccccC-CCccCEEeccCCc
Q psy3330         204 LNENLIETVLD----NSFPFTLTNLHTLALSSNIISFINESSFVT-LRTLHSLDLSNNN  257 (608)
Q Consensus       204 L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~  257 (608)
                      |+.|.++....    ..+.. +++|+.|+++.|.++......+.. +  ...++++.++
T Consensus       286 Ls~n~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          286 ISAGVLTDEGARLLLDHVDK-IKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CCSSCCBHHHHHHHHTTHHH-HTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCCChHHHHHHHhhccc-CCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            88888776422    22233 788999999998876533333322 1  2456776665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=2.2e-07  Score=84.67  Aligned_cols=116  Identities=15%  Similarity=0.058  Sum_probs=71.4

Q ss_pred             ccccCCCccEEEeeCC-CCcccC----cccccccccccEEEccCCCCCCCC----hhhhcCCCcCcEeeccCCcCCccC-
Q psy3330          69 TLSFYIELRSLDLSVN-KINVLG----SHNFEYQNKLLNLNISYNEISALS----KDTFKGLKELKTLDLSYNKISVIN-  138 (608)
Q Consensus        69 ~~~~~~~L~~L~Ls~n-~l~~i~----~~~f~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~-  138 (608)
                      .+...+.|++|+|++| .+....    ...+...++|++|+|++|.|..-.    ...+...++|++|+|++|.|+... 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4556677777777777 665422    123445567777777777766422    223444567777777777776532 


Q ss_pred             ---hhhhCCCCCCcEEEc--cCCCCCccC---chhhhcCCCCccEEEccCCCCC
Q psy3330         139 ---KTAFRDTLHLELLIL--SFNNITYFE---DSEIFSSLKSLRILKLDNNQIL  184 (608)
Q Consensus       139 ---~~~~~~l~~L~~L~L--~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~  184 (608)
                         ...+...++|++|+|  ++|.+....   ....+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               234555667888888  677776532   0234455577888888877654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=2.1e-07  Score=84.74  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             ccccEEEeccC-CCcc-----cccccccCCCccEEEeeCCCCcccCc----ccccccccccEEEccCCCCCCCC----hh
Q psy3330          51 PEVQTIILREN-RISN-----VHYTLSFYIELRSLDLSVNKINVLGS----HNFEYQNKLLNLNISYNEISALS----KD  116 (608)
Q Consensus        51 ~~l~~L~L~~n-~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~i~~----~~f~~l~~L~~L~Ls~n~i~~~~----~~  116 (608)
                      +.+++|+|++| .+..     +...+...++|++|+|++|.|.....    ..+...+.|++|+|++|.|+...    ..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            45666666666 5542     22344555666666666666554221    12333455666666666655421    22


Q ss_pred             hhcCCCcCcEeec--cCCcCCccCh----hhhCCCCCCcEEEccCCCCC
Q psy3330         117 TFKGLKELKTLDL--SYNKISVINK----TAFRDTLHLELLILSFNNIT  159 (608)
Q Consensus       117 ~~~~l~~L~~L~L--s~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~  159 (608)
                      ++...++|++|+|  ++|.|+....    ..+...++|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3444555666666  5566554221    23334455666666666543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.17  E-value=2.8e-07  Score=88.37  Aligned_cols=82  Identities=28%  Similarity=0.269  Sum_probs=46.9

Q ss_pred             cccccccEEEccCCCCCCCCh--hhhcCCCcCcEeeccCCcCCccCh-hhhCCCCCCcEEEccCCCCCccCc------hh
Q psy3330          95 EYQNKLLNLNISYNEISALSK--DTFKGLKELKTLDLSYNKISVINK-TAFRDTLHLELLILSFNNITYFED------SE  165 (608)
Q Consensus        95 ~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~  165 (608)
                      .++++|++|+|++|+|+++..  ..+..+++|+.|+|++|+|+++.. ..+..+ +|++|+|++|.+.+...      ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            345667777777777666542  344566677777777777666521 233333 66777777776654210      12


Q ss_pred             hhcCCCCccEEE
Q psy3330         166 IFSSLKSLRILK  177 (608)
Q Consensus       166 ~~~~l~~L~~L~  177 (608)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            355566666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=7e-07  Score=85.59  Aligned_cols=82  Identities=29%  Similarity=0.199  Sum_probs=65.4

Q ss_pred             ccCCCccEEEeeCCCCcccCc--ccccccccccEEEccCCCCCCCC-hhhhcCCCcCcEeeccCCcCCccCh-------h
Q psy3330          71 SFYIELRSLDLSVNKINVLGS--HNFEYQNKLLNLNISYNEISALS-KDTFKGLKELKTLDLSYNKISVINK-------T  140 (608)
Q Consensus        71 ~~~~~L~~L~Ls~n~l~~i~~--~~f~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-------~  140 (608)
                      .++++|+.|+|++|.|+.++.  ..+..+++|+.|+|++|+|+++. -+.+.++ +|++|+|++|.+.+-.+       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            568999999999999998764  56778999999999999999873 1233444 99999999999975222       3


Q ss_pred             hhCCCCCCcEEEc
Q psy3330         141 AFRDTLHLELLIL  153 (608)
Q Consensus       141 ~~~~l~~L~~L~L  153 (608)
                      .+..+++|+.||-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            4678899998874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.08  E-value=3.3e-06  Score=74.97  Aligned_cols=84  Identities=14%  Similarity=0.148  Sum_probs=48.3

Q ss_pred             CCccEEEeeCCCCcccCcccccccccccEEEccCCC-CCCCChhhhcCC----CcCcEeeccCCc-CCccChhhhCCCCC
Q psy3330          74 IELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNE-ISALSKDTFKGL----KELKTLDLSYNK-ISVINKTAFRDTLH  147 (608)
Q Consensus        74 ~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~  147 (608)
                      .+|+.||++++.|+...-..+.++++|++|+|++|. |+.-.-..+..+    ++|++|+|++|. |+...-..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666665555555666667777776663 543332334443    356666666653 55433344555666


Q ss_pred             CcEEEccCCC
Q psy3330         148 LELLILSFNN  157 (608)
Q Consensus       148 L~~L~L~~n~  157 (608)
                      |+.|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.86  E-value=4.5e-06  Score=74.10  Aligned_cols=86  Identities=12%  Similarity=0.027  Sum_probs=52.7

Q ss_pred             CceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCC----cccceeecccCccccccCcccCCCCC
Q psy3330         338 TLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDN----IQLETVIINENMNLKQLPSKLFQGNT  413 (608)
Q Consensus       338 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l----~~L~~L~Ls~N~~l~~lp~~~f~~l~  413 (608)
                      ...++.||++++.++...-..+.++++|+.|+++.|..++......+..+    ++|++|+|++|..+++-.-..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            34678999999988776655666666777777766666655555555543    35666666666544443322344455


Q ss_pred             CCCEEEcCCC
Q psy3330         414 NLKSVSLKGN  423 (608)
Q Consensus       414 ~L~~L~L~~N  423 (608)
                      +|+.|+|+++
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            5555555555

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.91  E-value=0.0011  Score=59.85  Aligned_cols=113  Identities=8%  Similarity=-0.023  Sum_probs=66.7

Q ss_pred             cccCCCccEEEeeCC-CCcccC----cccccccccccEEEccCCCCCCCCh----hhhcCCCcCcEeeccCCcCCccCh-
Q psy3330          70 LSFYIELRSLDLSVN-KINVLG----SHNFEYQNKLLNLNISYNEISALSK----DTFKGLKELKTLDLSYNKISVINK-  139 (608)
Q Consensus        70 ~~~~~~L~~L~Ls~n-~l~~i~----~~~f~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~-  139 (608)
                      +.+-+.|+.|+|++| +|..-.    ..++..-..|+.|+|++|.|.....    .++..-+.|++|+|++|.|+.... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345566777777764 665321    2234455677777777777764322    233445678888888887764322 


Q ss_pred             ---hhhCCCCCCcEEEccCCCC---CccC---chhhhcCCCCccEEEccCCC
Q psy3330         140 ---TAFRDTLHLELLILSFNNI---TYFE---DSEIFSSLKSLRILKLDNNQ  182 (608)
Q Consensus       140 ---~~~~~l~~L~~L~L~~n~l---~~~~---~~~~~~~l~~L~~L~L~~n~  182 (608)
                         .++..-+.|++|+|++|..   ....   ....+..-+.|+.|+++.|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence               3445556688888875532   2211   02344555778888887664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.58  E-value=0.004  Score=56.22  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=17.1

Q ss_pred             CCCcCcEeeccCCcCCccCh----hhhCCCCCCcEEEccCCCCC
Q psy3330         120 GLKELKTLDLSYNKISVINK----TAFRDTLHLELLILSFNNIT  159 (608)
Q Consensus       120 ~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~  159 (608)
                      .-..|+.|+|++|.|.....    .++..-+.|+.|+|++|.|.
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            33445555555554443211    12223344555555555544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=93.17  E-value=0.13  Score=40.62  Aligned_cols=49  Identities=22%  Similarity=0.420  Sum_probs=41.2

Q ss_pred             CCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCc
Q psy3330         374 PNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS  424 (608)
Q Consensus       374 ~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~  424 (608)
                      ..++.|+..+|.+|.+|+.+.|-.+  ++.|...+|.++.+|+.+.+.+..
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence            4567788888999999999999876  889999999999999999887754

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=89.16  E-value=0.62  Score=36.67  Aligned_cols=50  Identities=18%  Similarity=0.338  Sum_probs=44.2

Q ss_pred             CCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCc
Q psy3330         348 GNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENM  399 (608)
Q Consensus       348 ~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~  399 (608)
                      +..++.|...+|.++++|+.+.|-  ..++.|+..+|.+|.+|+.+.+....
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP--~~v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQ--PNIGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEEC--TTSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccCEecHHHhcCCCCCcEEEcC--CchheEcHHHHhccCCccEEEEcCCC
Confidence            457788999999999999999987  57899999999999999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	608
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-14
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 1e-16
 Identities = 68/265 (25%), Positives = 104/265 (39%), Gaps = 8/265 (3%)

Query: 22  CPSRCQCFDQ-KLEASCTDAGLEVVPIQLNPEVQTIILRENRISNV-HYTLSFYIELR-S 78
           CP  C C+++ K+  SC   GL+ VP+ +    Q I L  NRIS+V   +      L   
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 79  LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
              S     +  +                 ++ ++   TF GL  L TL L    +  + 
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQS 198
              FR    L+ L L  N +    D + F  L +L  L L  N+I  VP      L   S
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLH--S 178

Query: 199 LHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL 258
           L  L L++N +  V  ++F   L  L TL L +N +S +   +   LR L  L L++N  
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 259 SAIPTKQLSKLSALVNLDLSGNNFS 283
                +     + L     S +   
Sbjct: 238 VCDC-RARPLWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 51/218 (23%), Positives = 80/218 (36%), Gaps = 7/218 (3%)

Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 305
                + L  N +S +P         L  L L  N  + ID+ AF  L  L+ + ++   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 306 NLDSIDQPLSLSLPPL-LLSLSIPLAFSLTPLGTLKCDRL---DLSGNNFSNIDSVAFKS 361
            L S+D      L  L  L L       L P        L    L  N    +    F+ 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 362 LFSLKLVKINLIPN-LDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSL 420
           L +L    + L  N + S+ +RAF     L+ +++++N      P         +     
Sbjct: 152 LGNLT--HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 421 KGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLW 458
             N  +    +  PL  + +L L+DNP  CDC    LW
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.7 bits (182), Expect = 3e-15
 Identities = 72/300 (24%), Positives = 109/300 (36%), Gaps = 54/300 (18%)

Query: 21  ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLD 80
           +CP RCQC        C+D GLE VP  L P+                          LD
Sbjct: 3   VCPFRCQC--HLRVVQCSDLGLEKVPKDLPPD-----------------------TALLD 37

Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
           L  NKI  +   +F+    L  L +  N+IS +S   F  L +L+ L LS N++  + + 
Sbjct: 38  LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 97

Query: 141 AFRDTLHLELLILSFNNITYF----------------------EDSEIFSSLKSLRILKL 178
             +    L +       +                          ++  F  +K L  +++
Sbjct: 98  MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 157

Query: 179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFIN 238
            +  I  +P  +  +     L  L+L+ N I  V   S    L NL  L LS N IS ++
Sbjct: 158 ADTNITTIPQGLPPS-----LTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVD 211

Query: 239 ESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKL 298
             S      L  L L+NN L  +P    +    +  + L  NN S I S  F        
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 59/288 (20%), Positives = 107/288 (37%), Gaps = 21/288 (7%)

Query: 172 SLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSS 231
            LR+++  +  +  VP ++  +        L L  N I  + D  F   L NLHTL L +
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDT-----ALLDLQNNKITEIKDGDFK-NLKNLHTLILIN 64

Query: 232 NIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK 291
           N IS I+  +F  L  L  L LS N L  +P K    L     L +  N  + +    F 
Sbjct: 65  NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITKVRKSVFN 121

Query: 292 SLFSLKLVKINLIPNLDSIDQPLSLSLPPLL--LSLSIPLAFSLTPLGTLKCDRLDLSGN 349
            L  + +V++   P   S  +  +      L  + ++     ++          L L GN
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 181

Query: 350 NFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLF 409
             + +D+ + K L +L  + ++        +          E  + N  +          
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL---VKVPGGL 238

Query: 410 QGNTNLKSVSLKGNSLSHLEASHFP-------LERISFLDLSDNPLHC 450
             +  ++ V L  N++S + ++ F            S + L  NP+  
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 43/214 (20%), Positives = 70/214 (32%), Gaps = 28/214 (13%)

Query: 246 RTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP 305
                LDL NN ++ I       L  L  L L  N  S I   AF  L  L+        
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER------- 83

Query: 306 NLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSL 365
                            L LS      L          L +  N  + +    F  L  +
Sbjct: 84  -----------------LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 366 KLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSL 425
            +V++   P   S  +      ++  + I   + N+  +P  L     +L  + L GN +
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKI 183

Query: 426 SHLEASHFP-LERISFLDLSDNPLHCDCNLLWLW 458
           + ++A+    L  ++ L LS N +    N     
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 2e-14
 Identities = 45/211 (21%), Positives = 74/211 (35%), Gaps = 5/211 (2%)

Query: 248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNL 307
              ++    NL+A+P   L K      L LS N               L  + ++     
Sbjct: 12  HLEVNCDKRNLTALPP-DLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 308 DSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKL 367
                     L  L LS +   +  L          LD+S N  +++   A +     +L
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR--GLGEL 126

Query: 368 VKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSH 427
            ++ L  N         +        +   N NL +LP+ L  G  NL ++ L+ NSL  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 428 LEASHFPLERISFLDLSDNPLHCDCNLLWLW 458
           +    F    + F  L  NP  C+C +L+  
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEILYFR 217

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 46/209 (22%), Positives = 76/209 (36%), Gaps = 9/209 (4%)

Query: 25  RCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSV 83
                   LE +C    L  +P  L  +   + L EN +      TL  Y  L  L+L  
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 84  NKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFR 143
            ++        +    +L      +          + L  L  LD+S+N+++ +   A R
Sbjct: 65  AELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 144 DTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLY 203
               L+ L L  N +       + +    L  L L NN + ++P  +L+ L +  L  L 
Sbjct: 122 GLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN--LDTLL 178

Query: 204 LNENLIETVLDNSFPFTLTNLHTLALSSN 232
           L EN + T+    F      L    L  N
Sbjct: 179 LQENSLYTIPKGFFG--SHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 40/201 (19%), Positives = 61/201 (30%), Gaps = 12/201 (5%)

Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
            L +N     ++AL  D  K   +   L LS N +   +         L  L L    +T
Sbjct: 12  HLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
             +       L +        +   +   ++           +        T L      
Sbjct: 69  KLQVDGTLPVLGT-------LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
            L  L  L L  N +  +          L  L L+NNNL+ +P   L+ L  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 280 NNFSNIDSVAF--KSLFSLKL 298
           N+   I    F    L    L
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFL 202

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 22  CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISN--VHYTLSFYIELRSL 79
           CP+ C C  +     CT  GL+ +P  +      ++L +N +              L  L
Sbjct: 2   CPAMCHC--EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKL 59

Query: 80  DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK 139
           +L  N++  +  + FE  + +  L +  N+I  +S   F GL +LKTL+L  N+IS +  
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

Query: 140 TAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSL 199
            +F     L    L+  +  +  +  +    + LR   L+         + + ++  + L
Sbjct: 120 GSFEHLNSLT--SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDL 177

Query: 200 HYLYLN 205
            +    
Sbjct: 178 PHSEFK 183

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 9e-09
 Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 18/200 (9%)

Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
           L      +           L  L+++ N++  +   T   L  L  LDL+ N+IS +   
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNL--A 257

Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
                  L  L L  N I+        ++L +            +   ++      ++L 
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTN-------LELNENQLEDISPISNLKNLT 310

Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSA 260
           YL L  N I  +   S   +LT L  L  ++N +S +  SS   L  ++ L   +N +S 
Sbjct: 311 YLTLYFNNISDISPVS---SLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISD 365

Query: 261 IPTKQLSKLSALVNLDLSGN 280
           +    L+ L+ +  L L+  
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 71/375 (18%), Positives = 127/375 (33%), Gaps = 27/375 (7%)

Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
             + K NV  + +    +++  L      I ++  D  + L  L  ++ S N+++ I  T
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI--T 82

Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLH 200
             ++   L  ++++ N I         ++L  L +       I  + N    N    S +
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 201 YLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSF---------VTLRTLHSL 251
            +     L          F         L++       + S            L  L SL
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 252 DLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
             +NN +S I    +   + L  L L+GN   +I ++A  +  +   +  N I NL  + 
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS 260

Query: 312 QPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKIN 371
               L+     L L      +++PL  L             N             L  + 
Sbjct: 261 GLTKLTE----LKLGANQISNISPLAGLTALTNL---ELNENQLEDISPISNLKNLTYLT 313

Query: 372 LIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEAS 431
           L  N  S D        +L+ +    N  +  + S      TN+  +S   N +S L   
Sbjct: 314 LYFNNIS-DISPVSSLTKLQRLFFANN-KVSDVSS--LANLTNINWLSAGHNQISDLTPL 369

Query: 432 HFPLERISFLDLSDN 446
              L RI+ L L+D 
Sbjct: 370 A-NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 67/325 (20%), Positives = 122/325 (37%), Gaps = 45/325 (13%)

Query: 76  LRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS 135
           + +L      I  +     EY N L  +N S N+++ ++    K L +L  + ++ N+I+
Sbjct: 46  VTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 101

Query: 136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNV----- 190
            I   A    L    L  +         +    +   L    + +   L    ++     
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 191 ---------LSNLPHQSLHYLYLNENLIETVLDNSFPFT-----------------LTNL 224
                    L+NL       +  N+    +VL                        LTNL
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221

Query: 225 HTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN 284
             L+L+ N +  I   +  +L  L  LDL+NN +S +    LS L+ L  L L  N  SN
Sbjct: 222 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 277

Query: 285 IDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKC-DR 343
           I  +A  +  +   +  N + ++  I    +L+     L+L       ++P+ +L    R
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTY----LTLYFNNISDISPVSSLTKLQR 333

Query: 344 LDLSGNNFSNIDSVA-FKSLFSLKL 367
           L  + N  S++ S+A   ++  L  
Sbjct: 334 LFFANNKVSDVSSLANLTNINWLSA 358

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 3e-08
 Identities = 38/212 (17%), Positives = 72/212 (33%)

Query: 100 LLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT 159
            + L     ++  + K  F G  +L+ +++S N +  + +      L     I       
Sbjct: 31  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90

Query: 160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPF 219
               +             L +N  +    +V      Q +     +   I T+  NSF  
Sbjct: 91  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150

Query: 220 TLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG 279
                  L L+ N I  I+  +F   +        NNNL  +P       S  V LD+S 
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210

Query: 280 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSID 311
               ++ S   ++L  L+      +  L +++
Sbjct: 211 TRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 2/83 (2%)

Query: 79  LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
           L L+ N I  + +  F             N +  L  D F G      LD+S  +I  + 
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 139 KTAFRDTLHLELLILSFNNITYF 161
                +   L     S  N+   
Sbjct: 218 SYGLENLKKLR--ARSTYNLKKL 238

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 217 FPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLD 276
                 +L  L +S+N +  +          L  L  S N+L+ +P         L  L 
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP----ELPQNLKQLH 330

Query: 277 LSGNNFSNIDSVAFKSLFSLKL 298
           +  N       +  +S+  L++
Sbjct: 331 VEYNPLREFPDI-PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 15/114 (13%)

Query: 92  HNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELL 151
           + F   ++L       N  S   +        L+ L++S NK+  +     R    LE L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR----LERL 309

Query: 152 ILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLN 205
           I SFN++      E+    ++L+ L ++ N + + P+        +S+  L +N
Sbjct: 310 IASFNHLA-----EVPELPQNLKQLHVEYNPLREFPDIP------ESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 81  LSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKT 140
             +N  +       +    L  LN+S N++  L          L+ L  S+N ++ + + 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL 322

Query: 141 AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI 175
                 +L+ L + +N +  F D  I  S++ LR+
Sbjct: 323 PQ----NLKQLHVEYNPLREFPD--IPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 13/83 (15%)

Query: 196 HQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN 255
             SL  L ++ N +        P     L  L  S N ++ + E      + L  L +  
Sbjct: 283 PPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEY 333

Query: 256 NNLSAIPTKQLSKLSALVNLDLS 278
           N L   P        ++ +L ++
Sbjct: 334 NPLREFP----DIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
              N  S    S      +L  L++SNN L  +P    +    L  L  S N+ + +  +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL 322

Query: 289 AFKSLFSLKLV--KINLIPNL 307
             ++L  L +    +   P++
Sbjct: 323 -PQNLKQLHVEYNPLREFPDI 342

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 77  RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISV 136
           R L L+   + VL   + E    + +L++S+N + A        L+ L+ L  S N +  
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN 57

Query: 137 INKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN---NVLSN 193
           ++     +   L+ L+L  N +      +   S   L +L L  N +         +   
Sbjct: 58  VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 194 LPH 196
           LP 
Sbjct: 116 LPS 118

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 174 RILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNI 233
           R+L L +  +  + +  L  L    + +L L+ N +           L  L  L  S N 
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLL--VTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA 54

Query: 234 ISFINESSFVTLRTLHSLDLSNNNLSAIPT-KQLSKLSALVNLDLSGNNFSNIDSV 288
           +  +       L  L  L L NN L      + L     LV L+L GN+    + +
Sbjct: 55  LENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 10/126 (7%)

Query: 151 LILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE 210
           L L+  ++T          L  +  L L +N++  +P  +       +L  L + +    
Sbjct: 3   LHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPAL------AALRCLEVLQASDN 53

Query: 211 TVLDNSFPFTLTNLHTLALSSN-IISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKL 269
            + +      L  L  L L +N +         V+   L  L+L  N+L      Q    
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 270 SALVNL 275
             L ++
Sbjct: 114 EMLPSV 119

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 223 NLHTLALSSNIISFINESSFVT-LRTLHSLDLSNNNLSAIPTKQLSK----LSALVNLDL 277
           ++ +L +    +S    +  +  L+    + L +  L+    K +S       AL  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 278 SGNNFSNIDSVAFKSLF---SLKLVKINL 303
             N   ++            S K+ K++L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-05
 Identities = 13/94 (13%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 145 TLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNL--PHQSLHYL 202
           +L ++ L +    ++    +E+   L+  ++++LD+  + +     +S+    + +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 203 YLNENLIE----TVLDNSFPFTLTNLHTLALSSN 232
            L  N +       +          +  L+L + 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 100 LLNLNISYNEISALS-KDTFKGLKELKTLDLSYNKISVINKTAFRDTL----HLELLILS 154
           + +L+I   E+S     +    L++ + + L    ++          L     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 155 FNNITYFEDSEIFSSLKS----LRILKLDNNQ 182
            N +       +   L++    ++ L L N  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 123 ELKTLDLSYNKISVINKTAFRDTL-HLELLILSFNNITYFEDSEIFSSLK---SLRILKL 178
           ++++LD+   ++S          L   +++ L    +T     +I S+L+   +L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 179 DNNQILDVPNNVLSNL---PHQSLHYLYLN 205
            +N++ DV  + +      P   +  L L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 115 KDTFKGLKELKTLDLSYNKISVINKTAFRDTL----HLELLILSFNNITYFEDSEIFSSL 170
           +   +    L+ L L+   +S  + ++   TL     L  L LS N +      ++  S+
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 171 KS----LRILKLDNNQILDVPNNVLSNL 194
           +     L  L L +    +   + L  L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 14/119 (11%), Positives = 44/119 (36%), Gaps = 10/119 (8%)

Query: 74  IELRSLDLSVNKINVLG-SHNFEYQNKLLNLNISYNEISALS----KDTFKGLKELKTLD 128
           ++++SLD+   +++    +       +   + +    ++           +    L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 129 LSYNKIS-----VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQ 182
           L  N++       + +     +  ++ L L    +T      + S+L++L  L+  +  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 91  SHNFEYQNKLLNLNISYNEISALS----KDTFKGLKELKTLDLSYNKISVINKTAFRDTL 146
               +  + L  L ++  ++S  S      T      L+ LDLS N +         +++
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 147 -----HLELLILSFNNITYFEDSEIFSSLK---SLRIL 176
                 LE L+L     +   +  + +  K   SLR++
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 8/223 (3%)

Query: 61  NRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKG 120
           N +  +   ++   +L  L ++   ++            L+ L+ SYN +S     +   
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 121 LKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN 180
           L  L  +    N+IS     ++     L   +    N    +    F++L    +    N
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207

Query: 181 NQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINES 240
               D      S+   Q +H    +        D        NL+ L L +N I      
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 241 SFVTLRTLHSLDLSNNNLS-AIPTKQLSKLSALVNLDLSGNNF 282
               L+ LHSL++S NNL   IP  Q   L        + N  
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNKC 303

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 8/149 (5%)

Query: 128 DLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP 187
           +L   ++  + K             L    +    D     +     +L   ++      
Sbjct: 3   ELKPEQVEQL-KLIMSKRYDGSQQALDLKGLRSDPD---LVAQNIDVVLNRRSSMA-ATL 57

Query: 188 NNVLSNLPHQSLHYLYLNENLIETVLDNSFPF-TLTNLHTLALSSNIISFINESSFVTLR 246
             +  N+P   L  L L+ N +  + D S       NL  L LS N +    E   +   
Sbjct: 58  RIIEENIP--ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 115

Query: 247 TLHSLDLSNNNLSAIPTKQLSKLSALVNL 275
            L  L L  N+LS     Q + +SA+   
Sbjct: 116 KLEELWLDGNSLSDTFRDQSTYISAIRER 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 117 TFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL 176
            +      + LDL   KI VI           + +  S N I   +    F  L+ L+ L
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTL 68

Query: 177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISF 236
            ++NN+I  +   +   LP      L L  N +  + D     +L +L  L +  N ++ 
Sbjct: 69  LVNNNRICRIGEGLDQALPDL--TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126

Query: 237 INESSFVTLRTLHSL 251
                   +  +  +
Sbjct: 127 KKHYRLYVIYKVPQV 141

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 9/154 (5%)

Query: 229 LSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
           L++ +I     + +        LDL    +  I     + L     +D S N    +D  
Sbjct: 3   LTAELIE--QAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG- 58

Query: 289 AFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSG 348
            F  L  LK + +N        +           L L+      L  L  L      L  
Sbjct: 59  -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS----LKS 113

Query: 349 NNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQR 382
             +  I      +    +L  I  +P +  +D +
Sbjct: 114 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 16/191 (8%)

Query: 99  KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
           + +  N+    ++     T   L  +  +  + + I  +     +   ++  L L+ N +
Sbjct: 25  ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKL 80

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDN--- 215
           T  +      +L  L + +     +  + +           + +     L+         
Sbjct: 81  TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140

Query: 216 -------SFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
                               LS       +      L  L +L LS N++S +    L+ 
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR--ALAG 198

Query: 269 LSALVNLDLSG 279
           L  L  L+L  
Sbjct: 199 LKNLDVLELFS 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 31/211 (14%), Positives = 65/211 (30%), Gaps = 17/211 (8%)

Query: 99  KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNI 158
             + +    + ++     T   L  + TL      ++ I     +   +L  L L  N I
Sbjct: 20  NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI 75

Query: 159 TYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFP 218
           T     +  + +  L +       +  +           +   +     L          
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 219 FTLTNLHTLAL----------SSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSK 268
             L  +  ++           S       + +    L  L +L   +N +S I    L+ 
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193

Query: 269 LSALVNLDLSGNNFSNIDSVA-FKSLFSLKL 298
           L  L+ + L  N  S++  +A   +LF + L
Sbjct: 194 LPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 16/210 (7%)

Query: 79  LDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVIN 138
           + ++  K NV  +      + +  L+     ++ +     + L  L  L+L  N+I+ + 
Sbjct: 22  IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA 79

Query: 139 KTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQIL----------DVPN 188
                  +    L  +                  L   ++ +   L             N
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 189 NVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTL 248
            + +  P   L  L         V D +    L+ L TL    N IS I  S   +L  L
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI--SPLASLPNL 197

Query: 249 HSLDLSNNNLSAIPTKQLSKLSALVNLDLS 278
             + L NN +S +    L+  S L  + L+
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 234 ISFINESSFVTLRTLHSLDLSNNNLS-----AIPTKQLSKLSALVNLDLSGNNFSNIDSV 288
            + ++  S +    L +L L  N +       + T    K+  L+ L+L+GN FS  D V
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320

Query: 289 AFKSLFSLKLVKINLIPNLDSIDQ 312
             +            +  LD +++
Sbjct: 321 VDEIREVFSTRGRGELDELDDMEE 344

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	608
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.9
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.89
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.44

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-34  Score=282.15  Aligned_cols=196  Identities=27%  Similarity=0.463  Sum_probs=116.1

Q ss_pred             CCCCCceec-CCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330          21 ICPSRCQCF-DQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        21 ~Cp~~C~c~-~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      +||..|.|. ..+..|.|++.+++++|..+|+++++|+|++|+|+.+|+ +|.++++|++|++++|++..++...+.++.
T Consensus         1 ~cp~~C~C~~~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~   80 (284)
T d1ozna_           1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (284)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CcCCCCEEcCCCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc
Confidence            599999996 456789999999999999998888877777777766654 455555555555555555555554444444


Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEc
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKL  178 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  178 (608)
                      .++.++..                       ..+.++.+++..|.++++|++|++++|.+..+. +..+....+|+.+++
T Consensus        81 ~~~~l~~~-----------------------~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l  136 (284)
T d1ozna_          81 LLEQLDLS-----------------------DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYL  136 (284)
T ss_dssp             TCCEEECC-----------------------SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred             cccccccc-----------------------cccccccccchhhcccccCCEEecCCccccccc-ccccchhcccchhhh
Confidence            44444432                       233444555555666666666666666655544 334444444444444


Q ss_pred             cCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcC
Q psy3330         179 DNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNL  258 (608)
Q Consensus       179 ~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  258 (608)
                      ++|.++.+++                                                   ..|..+++|+.|++++|++
T Consensus       137 ~~N~l~~i~~---------------------------------------------------~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_         137 QDNALQALPD---------------------------------------------------DTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             CSSCCCCCCT---------------------------------------------------TTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccCh---------------------------------------------------hHhccccchhhcccccCcc
Confidence            4444433332                                                   2233334455555555555


Q ss_pred             CCCChhhhhCCCCCCEEeccCCCCCccChhhhC
Q psy3330         259 SAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK  291 (608)
Q Consensus       259 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~  291 (608)
                      +.+++.+|.++++|+.+++++|+++++.+..|.
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~  198 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccchhhhccccccchhhhhhccccccChhHhh
Confidence            555555566666666666666666555544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.7e-32  Score=269.11  Aligned_cols=261  Identities=30%  Similarity=0.428  Sum_probs=235.0

Q ss_pred             CCCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330          20 AICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        20 ~~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      ..||..|+|..  ..|+|++.+++++|.++|+++++|+|++|+|+.+++ +|.++++|++|++++|.+..+++..|.+++
T Consensus         2 ~~~p~~c~c~~--~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~   79 (305)
T d1xkua_           2 PVCPFRCQCHL--RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV   79 (305)
T ss_dssp             CCCCTTCEEET--TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CCCCCCCEecC--CEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC
Confidence            57999999954  579999999999999999999999999999999986 789999999999999999999999999999


Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC-chhhhcCCCCccEEE
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE-DSEIFSSLKSLRILK  177 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~  177 (608)
                      +|++|++++|+++.++...   ...++.|+++.|.+..+....+.....++.++...|...... ....|..+++|+.++
T Consensus        80 ~L~~L~l~~n~l~~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~  156 (305)
T d1xkua_          80 KLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  156 (305)
T ss_dssp             TCCEEECCSSCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             ccCEecccCCccCcCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccc
Confidence            9999999999999998543   357899999999999999999999999999999988654432 145788999999999


Q ss_pred             ccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCc
Q psy3330         178 LDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNN  257 (608)
Q Consensus       178 L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  257 (608)
                      +++|.+..++...+     ++++.|++++|......+..|.. ++.++.|++++|.+.++.+..|.++++|++|+|++|+
T Consensus       157 l~~n~l~~l~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~  230 (305)
T d1xkua_         157 IADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  230 (305)
T ss_dssp             CCSSCCCSCCSSCC-----TTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             cccCCccccCcccC-----CccCEEECCCCcCCCCChhHhhc-cccccccccccccccccccccccccccceeeeccccc
Confidence            99999998876532     56999999999999998888887 8999999999999999999999999999999999999


Q ss_pred             CCCCChhhhhCCCCCCEEeccCCCCCccChhhhCC
Q psy3330         258 LSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKS  292 (608)
Q Consensus       258 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~  292 (608)
                      ++++|. .+..+++|+.|+|++|+|+.++..+|..
T Consensus       231 L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         231 LVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             CSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             cccccc-ccccccCCCEEECCCCccCccChhhccC
Confidence            999985 7899999999999999999998877754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-29  Score=242.93  Aligned_cols=217  Identities=28%  Similarity=0.391  Sum_probs=168.2

Q ss_pred             cCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCc
Q psy3330         168 SSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRT  247 (608)
Q Consensus       168 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  247 (608)
                      .+...+.+++.++++++.+|+.    ++ +++++|+|++|.++++++..|.. +++|++|++++|+++.+.  .+..+++
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~----lp-~~l~~L~Ls~N~i~~l~~~~f~~-l~~L~~L~L~~N~l~~l~--~~~~l~~   78 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPD----LP-KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELTKLQ--VDGTLPV   78 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSC----CC-TTCCEEECTTSCCSEEEGGGGTT-CTTCCEEECTTSCCCEEE--CCSCCTT
T ss_pred             cccCCCeEEEccCCCCCeeCcC----cC-cCCCEEECcCCcCCCcCHHHhhc-cccccccccccccccccc--ccccccc
Confidence            3445566677777777777653    22 45777777777777777777776 777888888888777663  3456778


Q ss_pred             cCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcccc
Q psy3330         248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSI  327 (608)
Q Consensus       248 L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~  327 (608)
                      |++|++++|+++.++. .+.++++|+.|++++|.+..+.+..+..+.+++.|++                          
T Consensus        79 L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l--------------------------  131 (266)
T d1p9ag_          79 LGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL--------------------------  131 (266)
T ss_dssp             CCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC--------------------------
T ss_pred             cccccccccccccccc-ccccccccccccccccccceeeccccccccccccccc--------------------------
Confidence            8888888888877663 6777788888888888877777766666666554444                          


Q ss_pred             ccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcc
Q psy3330         328 PLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSK  407 (608)
Q Consensus       328 ~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~  407 (608)
                                         ++|.++.++                         +..|.++++|+.+++++|+ +..++.+
T Consensus       132 -------------------~~n~l~~l~-------------------------~~~~~~l~~l~~l~l~~N~-l~~~~~~  166 (266)
T d1p9ag_         132 -------------------KGNELKTLP-------------------------PGLLTPTPKLEKLSLANNN-LTELPAG  166 (266)
T ss_dssp             -------------------TTSCCCCCC-------------------------TTTTTTCTTCCEEECTTSC-CSCCCTT
T ss_pred             -------------------cccccceec-------------------------cccccccccchhccccccc-ccccCcc
Confidence                               445544444                         4455667888999999997 8899988


Q ss_pred             cCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHhh
Q psy3330         408 LFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQ  464 (608)
Q Consensus       408 ~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~  464 (608)
                      .|..+++|++|+|++|+|++||++++.+++|+.|+|++|||.|||.+.||..|++..
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~  223 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             ccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999999854

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=3.2e-27  Score=242.29  Aligned_cols=322  Identities=28%  Similarity=0.387  Sum_probs=194.6

Q ss_pred             CCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEE
Q psy3330          73 YIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLI  152 (608)
Q Consensus        73 ~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  152 (608)
                      +.+|++|++++++|+.++  .+..+++|++|++++|+|+.+++  |.++++|++|++++|.+..+.  .+.++++|+.|+
T Consensus        43 l~~l~~L~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             hCCCCEEECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc--cccccccccccc
Confidence            344555555555555442  24445555555555555555442  555555555555555555442  244555555555


Q ss_pred             ccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcc-------------------cccCCCCCCceEEEccCCCCcccc
Q psy3330         153 LSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNN-------------------VLSNLPHQSLHYLYLNENLIETVL  213 (608)
Q Consensus       153 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------~~~~l~~~~L~~L~L~~n~l~~~~  213 (608)
                      ++++.++... .  ......+..+....+.+..+...                   .+...  ..........|....  
T Consensus       117 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--  189 (384)
T d2omza2         117 LFNNQITDID-P--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL--TTLERLDISSNKVSD--  189 (384)
T ss_dssp             CCSSCCCCCG-G--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTC--TTCCEEECCSSCCCC--
T ss_pred             cccccccccc-c--ccccccccccccccccccccccccccccccccccccccchhhhhccc--ccccccccccccccc--
Confidence            5555544432 1  22223333333333222211111                   01111  112233333333222  


Q ss_pred             CCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCC
Q psy3330         214 DNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSL  293 (608)
Q Consensus       214 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l  293 (608)
                      ...+.. +++++.+++++|.++++.+  +...++|++|++++|+++.++  .+..+++|+.|++++|.++++.+  +..+
T Consensus       190 ~~~~~~-l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~  262 (384)
T d2omza2         190 ISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGL  262 (384)
T ss_dssp             CGGGGG-CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             cccccc-ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--cccc
Confidence            122333 6778888888888777644  455677888888888887765  47777888888888888877654  6677


Q ss_pred             CCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccC
Q psy3330         294 FSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLI  373 (608)
Q Consensus       294 ~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~  373 (608)
                      ++|+.|+++.+.-        . .+++.              .....++.++++.|+++++.  .+..+.+++.++++. 
T Consensus       263 ~~L~~L~l~~~~l--------~-~~~~~--------------~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~-  316 (384)
T d2omza2         263 TKLTELKLGANQI--------S-NISPL--------------AGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYF-  316 (384)
T ss_dssp             TTCSEEECCSSCC--------C-CCGGG--------------TTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCS-
T ss_pred             ccCCEeeccCccc--------C-CCCcc--------------cccccccccccccccccccc--ccchhcccCeEECCC-
Confidence            7888887753221        1 01100              01112367788888888754  467778888888887 


Q ss_pred             CCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEEccCC
Q psy3330         374 PNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLDLSDN  446 (608)
Q Consensus       374 ~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~L~~N  446 (608)
                      ++++.+.  .|..+++|++|++++|+ ++.++.  |+++++|++|++++|+|+.+++ +..+++|+.|+|++|
T Consensus       317 n~l~~l~--~l~~l~~L~~L~L~~n~-l~~l~~--l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         317 NNISDIS--PVSSLTKLQRLFFANNK-VSDVSS--LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCSCCG--GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCCc--ccccCCCCCEEECCCCC-CCCChh--HcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            6777664  37788999999999997 888874  8899999999999999999876 667899999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.6e-26  Score=227.86  Aligned_cols=234  Identities=24%  Similarity=0.344  Sum_probs=165.3

Q ss_pred             cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330          52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY  131 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  131 (608)
                      ..+.++-++++++.+|..+.  +++++|+|++|+|+.+++.+|.++++|++|++++|.+..+++.+|.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            35667888888999988664  6789999999999999988899999999999999999998888899999999999999


Q ss_pred             CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCC--CCcccccCCCCCCceEEEccCCCC
Q psy3330         132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILD--VPNNVLSNLPHQSLHYLYLNENLI  209 (608)
Q Consensus       132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~~~L~~L~L~~n~l  209 (608)
                      |+++.++...   ...++.|++..|.+..+. +..+.....++.++...|....  .....+..+  ++++.+++++|.+
T Consensus        89 n~l~~l~~~~---~~~l~~L~~~~n~l~~l~-~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l--~~L~~l~l~~n~l  162 (305)
T d1xkua_          89 NQLKELPEKM---PKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM--KKLSYIRIADTNI  162 (305)
T ss_dssp             SCCSBCCSSC---CTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC--TTCCEEECCSSCC
T ss_pred             CccCcCccch---hhhhhhhhccccchhhhh-hhhhhccccccccccccccccccCCCccccccc--cccCccccccCCc
Confidence            9988876533   356788888888888877 6777777788888877765432  222334444  4466666666666


Q ss_pred             ccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhh
Q psy3330         210 ETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVA  289 (608)
Q Consensus       210 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  289 (608)
                      ..++...    +++++.|++++|......+..|.+++.+++|++++|.++++++..+.++++|++|+|++|+++.++. +
T Consensus       163 ~~l~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-~  237 (305)
T d1xkua_         163 TTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-G  237 (305)
T ss_dssp             CSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-T
T ss_pred             cccCccc----CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc-c
Confidence            5543322    3456666666666666656666666666666666666666665666666666666666666665532 4


Q ss_pred             hCCCCCCce
Q psy3330         290 FKSLFSLKL  298 (608)
Q Consensus       290 f~~l~~L~~  298 (608)
                      |..+++|+.
T Consensus       238 l~~l~~L~~  246 (305)
T d1xkua_         238 LADHKYIQV  246 (305)
T ss_dssp             TTTCSSCCE
T ss_pred             cccccCCCE
Confidence            555554443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=9.8e-25  Score=223.60  Aligned_cols=323  Identities=24%  Similarity=0.362  Sum_probs=247.0

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      .++++|+++++.|+.+ +.+..+++|++|++++|+|+++++  |+++++|++|++++|++..+++  +.++++|+.|+++
T Consensus        44 ~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~  118 (384)
T d2omza2          44 DQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  118 (384)
T ss_dssp             TTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc--ccccccccccccc
Confidence            5799999999999987 467889999999999999999875  8899999999999999998864  8899999999999


Q ss_pred             CCcCCccChhhhCCCCCCcEEEccCCCCCccCc------------------hhhhcCCCCccEEEccCCCCCCCCccccc
Q psy3330         131 YNKISVINKTAFRDTLHLELLILSFNNITYFED------------------SEIFSSLKSLRILKLDNNQILDVPNNVLS  192 (608)
Q Consensus       131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  192 (608)
                      ++.++.+..  ......+.......|.+.....                  ...+.............|.....  ..+.
T Consensus       119 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  194 (384)
T d2omza2         119 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLA  194 (384)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred             ccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccc--cccc
Confidence            999887754  3344566666666655443320                  11223334444444554443322  2344


Q ss_pred             CCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCC
Q psy3330         193 NLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSAL  272 (608)
Q Consensus       193 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L  272 (608)
                      .+  ++++.+++++|.++++.+.  .. .++|+.|++++|.++.+  ..+..+++|+.|++++|.++++++  +..+++|
T Consensus       195 ~l--~~~~~l~l~~n~i~~~~~~--~~-~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L  265 (384)
T d2omza2         195 KL--TNLESLIATNNQISDITPL--GI-LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL  265 (384)
T ss_dssp             GC--TTCSEEECCSSCCCCCGGG--GG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             cc--cccceeeccCCccCCCCcc--cc-cCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccC
Confidence            45  5588999999998887543  33 67899999999998876  357788999999999999998874  8888999


Q ss_pred             CEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCC
Q psy3330         273 VNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFS  352 (608)
Q Consensus       273 ~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~  352 (608)
                      +.|++++|+++++.+  +..++.++.+.++.+.        +.+ ++. +.             ...+++.|++++|+++
T Consensus       266 ~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~--------l~~-~~~-~~-------------~~~~l~~L~ls~n~l~  320 (384)
T d2omza2         266 TELKLGANQISNISP--LAGLTALTNLELNENQ--------LED-ISP-IS-------------NLKNLTYLTLYFNNIS  320 (384)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSC--------CSC-CGG-GG-------------GCTTCSEEECCSSCCS
T ss_pred             CEeeccCcccCCCCc--cccccccccccccccc--------ccc-ccc-cc-------------hhcccCeEECCCCCCC
Confidence            999999999988764  6778888888885322        111 100 00             0113488999999999


Q ss_pred             CcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCc
Q psy3330         353 NIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNS  424 (608)
Q Consensus       353 ~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~  424 (608)
                      ++++  +..+++|+.|+++. ++++.++  .|.++++|++|++++|+ +..+++  +.++++|+.|+|++|.
T Consensus       321 ~l~~--l~~l~~L~~L~L~~-n~l~~l~--~l~~l~~L~~L~l~~N~-l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         321 DISP--VSSLTKLQRLFFAN-NKVSDVS--SLANLTNINWLSAGHNQ-ISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCGG--GGGCTTCCEEECCS-SCCCCCG--GGGGCTTCCEEECCSSC-CCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCcc--cccCCCCCEEECCC-CCCCCCh--hHcCCCCCCEEECCCCc-CCCChh--hccCCCCCEeeCCCCc
Confidence            9864  88899999999998 6888765  58899999999999997 888876  8899999999999983

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=1.2e-26  Score=231.10  Aligned_cols=263  Identities=21%  Similarity=0.196  Sum_probs=224.4

Q ss_pred             ecCCceEEEecCCCCccccCccCccccEEEeccCCCcc---cccccccCCCccEEEeeC-CCCcccCcccccccccccEE
Q psy3330          28 CFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISN---VHYTLSFYIELRSLDLSV-NKINVLGSHNFEYQNKLLNL  103 (608)
Q Consensus        28 c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~---l~~~~~~~~~L~~L~Ls~-n~l~~i~~~~f~~l~~L~~L  103 (608)
                      |...|..|.|...+       ...+|+.|+|+++.+++   +|.+++++++|++|+|++ |++++.-|..|+++++|++|
T Consensus        34 C~~~w~gv~C~~~~-------~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L  106 (313)
T d1ogqa_          34 CNRTWLGVLCDTDT-------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL  106 (313)
T ss_dssp             TTTCSTTEEECCSS-------SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEE
T ss_pred             CCCcCCCeEEeCCC-------CcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchh
Confidence            43357789997543       22479999999999984   788999999999999997 78885444579999999999


Q ss_pred             EccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCc-cEEEccCCC
Q psy3330         104 NISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSL-RILKLDNNQ  182 (608)
Q Consensus       104 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L-~~L~L~~n~  182 (608)
                      +|++|++.++++..+..+..|+++++++|.+....+..+.++++|+.+++++|.+.+.. |..+..+.++ +.++++.|+
T Consensus       107 ~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i-p~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSE
T ss_pred             hhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccc-cccccccccccccccccccc
Confidence            99999999999888999999999999999999888899999999999999999998766 6777777776 899999999


Q ss_pred             CCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCC
Q psy3330         183 ILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIP  262 (608)
Q Consensus       183 l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~  262 (608)
                      +++..+..+..+.   ...+++..+...+..+..+.. +++++.+++++|.+.+..+ .+..+++|+.|+|++|++++..
T Consensus       186 l~~~~~~~~~~l~---~~~l~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~i  260 (313)
T d1ogqa_         186 LTGKIPPTFANLN---LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             EEEECCGGGGGCC---CSEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECC
T ss_pred             ccccccccccccc---ccccccccccccccccccccc-ccccccccccccccccccc-ccccccccccccCccCeecccC
Confidence            9988887777653   557999999998888877776 8999999999999987644 6788999999999999999533


Q ss_pred             hhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCC
Q psy3330         263 TKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLI  304 (608)
Q Consensus       263 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~  304 (608)
                      |..+.++++|++|+|++|++++..|. +..+++|+.+++.++
T Consensus       261 P~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         261 PQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN  301 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSS
T ss_pred             ChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCC
Confidence            46899999999999999999976564 677888988888643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-25  Score=217.09  Aligned_cols=203  Identities=26%  Similarity=0.340  Sum_probs=155.9

Q ss_pred             CCceecC--CceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcccCcccccccccc
Q psy3330          24 SRCQCFD--QKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINVLGSHNFEYQNKL  100 (608)
Q Consensus        24 ~~C~c~~--~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L  100 (608)
                      +-|.|..  ....|+|++.+++++|.++|+++++|+|++|+|+.++. +|.++++|++|+|++|+|+.++.  ++.+++|
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L   79 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccc
Confidence            4588874  45689999999999999999999999999999999885 68889999999999999988864  5678889


Q ss_pred             cEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccC
Q psy3330         101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDN  180 (608)
Q Consensus       101 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  180 (608)
                      ++|+|++|+++..+. .+.++++|+.|++++|.+..+.+..+..+.++++|++++|.+..++ +..+..+++|+.+++++
T Consensus        80 ~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          80 GTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLAN  157 (266)
T ss_dssp             CEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccc-ccccccccccccccccccceeeccccccccccccccccccccceec-cccccccccchhccccc
Confidence            999999998887754 5778888888888888888887777778888888888888887776 66777777777777777


Q ss_pred             CCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCC
Q psy3330         181 NQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNII  234 (608)
Q Consensus       181 n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  234 (608)
                      |+++.+++..+..+  ++|++|+|++|+++.+++..+.  +++|+.|+|++|.+
T Consensus       158 N~l~~~~~~~~~~l--~~L~~L~Ls~N~L~~lp~~~~~--~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         158 NNLTELPAGLLNGL--ENLDTLLLQENSLYTIPKGFFG--SHLLPFAFLHGNPW  207 (266)
T ss_dssp             SCCSCCCTTTTTTC--TTCCEEECCSSCCCCCCTTTTT--TCCCSEEECCSCCB
T ss_pred             ccccccCccccccc--cccceeecccCCCcccChhHCC--CCCCCEEEecCCCC
Confidence            77777776666555  3466666666666554433332  45555555555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=3.9e-25  Score=220.04  Aligned_cols=254  Identities=21%  Similarity=0.212  Sum_probs=148.1

Q ss_pred             cccEEEccCCCCCCC--ChhhhcCCCcCcEeeccC-CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330          99 KLLNLNISYNEISAL--SKDTFKGLKELKTLDLSY-NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI  175 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  175 (608)
                      +++.|+|++|.+++.  .|..++++++|++|+|++ |++++..|..|+++++|++|+|++|++.+.. +..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-cccccchhhhcc
Confidence            455566665555531  123455555555555553 4444333444445555555555555544443 333444444444


Q ss_pred             EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCcc-CEEecc
Q psy3330         176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTL-HSLDLS  254 (608)
Q Consensus       176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls  254 (608)
                      ++++                          .|.+.+..+..+.. ++.++.+++++|.+.+..|..+..+..+ +.++++
T Consensus       130 l~l~--------------------------~N~~~~~~p~~l~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         130 LDFS--------------------------YNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             EECC--------------------------SSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred             cccc--------------------------cccccccCchhhcc-Ccccceeeccccccccccccccccccccccccccc
Confidence            4444                          44444333444443 5555555555555554444444444443 556666


Q ss_pred             CCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccC
Q psy3330         255 NNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLT  334 (608)
Q Consensus       255 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~  334 (608)
                      +|++++..+..+..+.. ..++++++...+..+..+..+++++.+++                                 
T Consensus       183 ~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~---------------------------------  228 (313)
T d1ogqa_         183 RNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHL---------------------------------  228 (313)
T ss_dssp             SSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEEC---------------------------------
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccccccccccc---------------------------------
Confidence            66666555555555433 35666666666665555555555544433                                 


Q ss_pred             CCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCC
Q psy3330         335 PLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTN  414 (608)
Q Consensus       335 ~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~  414 (608)
                                  ++|.+++.++                          .+..+++|+.|+|++|++.+.+|.. |+++++
T Consensus       229 ------------~~~~l~~~~~--------------------------~~~~~~~L~~L~Ls~N~l~g~iP~~-l~~L~~  269 (313)
T d1ogqa_         229 ------------AKNSLAFDLG--------------------------KVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKF  269 (313)
T ss_dssp             ------------CSSEECCBGG--------------------------GCCCCTTCCEEECCSSCCEECCCGG-GGGCTT
T ss_pred             ------------cccccccccc--------------------------ccccccccccccCccCeecccCChH-HhCCCC
Confidence                        3444433221                          2344578888999999866689887 888999


Q ss_pred             CCEEEcCCCccc-ccCCCCCCCCCCCEEEccCCccccccCC
Q psy3330         415 LKSVSLKGNSLS-HLEASHFPLERISFLDLSDNPLHCDCNL  454 (608)
Q Consensus       415 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~L~~N~~~CdC~~  454 (608)
                      |++|+|++|+|+ .||+ ...+++|+.+++++|++.|..|+
T Consensus       270 L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         270 LHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             CCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTS
T ss_pred             CCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCC
Confidence            999999999999 6774 46788999999999998887553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-24  Score=204.15  Aligned_cols=226  Identities=21%  Similarity=0.302  Sum_probs=145.4

Q ss_pred             CCCC-ceecCCceEEEecCCCCccccCccCccccEEEeccCCCccccc-ccccCCCccEEEeeCCCCcc-cCcccccccc
Q psy3330          22 CPSR-CQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHY-TLSFYIELRSLDLSVNKINV-LGSHNFEYQN   98 (608)
Q Consensus        22 Cp~~-C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~-~~~~~~~L~~L~Ls~n~l~~-i~~~~f~~l~   98 (608)
                      |++. |.|..  ..++|++.+++++|..+|+++++|++++|+|+.++. +|.++++|++|++++|.+.. +++.+|.+++
T Consensus         1 ~~~~~C~C~~--~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~   78 (242)
T d1xwdc1           1 CHHRICHCSN--RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP   78 (242)
T ss_dssp             CCCSSEEECS--SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT
T ss_pred             CcCCcCCCcC--CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc
Confidence            7766 99964  589999999999999999999999999888888876 67788888888888887654 6677788888


Q ss_pred             cccEEEccC-CCCCCCChhhhcCCCcCcEeeccCCcCCccChh-hhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330          99 KLLNLNISY-NEISALSKDTFKGLKELKTLDLSYNKISVINKT-AFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL  176 (608)
Q Consensus        99 ~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  176 (608)
                      .++++.+.. |++..+++..|.++++|+++++++|++...++. .+..+..+..+...++.+..+. +..|..+      
T Consensus        79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~-~~~~~~~------  151 (242)
T d1xwdc1          79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGL------  151 (242)
T ss_dssp             TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC-TTSSTTS------
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc-ccccccc------
Confidence            888887764 567777767777777777777777776654332 2233344444444555555444 3333333      


Q ss_pred             EccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEE-EccCCCCCccCcccccCCCccCEEeccC
Q psy3330         177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTL-ALSSNIISFINESSFVTLRTLHSLDLSN  255 (608)
Q Consensus       177 ~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  255 (608)
                                        + ..++.|++++|+++.+....|.  ..+++.+ .+.+|.++.+++..|.++++|++|++++
T Consensus       152 ------------------~-~~l~~L~l~~n~l~~i~~~~~~--~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~  210 (242)
T d1xwdc1         152 ------------------S-FESVILWLNKNGIQEIHNCAFN--GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR  210 (242)
T ss_dssp             ------------------B-SSCEEEECCSSCCCEECTTTTT--TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT
T ss_pred             ------------------c-ccceeeeccccccccccccccc--chhhhccccccccccccccHHHhcCCCCCCEEECCC
Confidence                              2 2344455555555544444443  2333333 3455556655555566666666666666


Q ss_pred             CcCCCCChhhhhCCCCCCEEec
Q psy3330         256 NNLSAIPTKQLSKLSALVNLDL  277 (608)
Q Consensus       256 n~l~~l~~~~~~~l~~L~~L~L  277 (608)
                      |+++.+|+..|.++++|+.+++
T Consensus       211 N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         211 TRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCCCCCCSSSCTTCCEEESSSE
T ss_pred             CcCCccCHHHHcCCcccccCcC
Confidence            6666666555555555554444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=2.9e-23  Score=190.42  Aligned_cols=176  Identities=23%  Similarity=0.483  Sum_probs=136.8

Q ss_pred             cCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCc-cChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccc
Q psy3330         248 LHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSN-IDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLS  326 (608)
Q Consensus       248 L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~  326 (608)
                      .++++.++++++.+|.+..   +++++|+|++|+|+. +.+..|..+++|+.|++                         
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L-------------------------   61 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLEL-------------------------   61 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEEC-------------------------
T ss_pred             CCEEEEeCCCcCccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeec-------------------------
Confidence            3466777777777765321   467777777777764 44555666666654444                         


Q ss_pred             cccccccCCCCCceecEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCc
Q psy3330         327 IPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPS  406 (608)
Q Consensus       327 ~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~  406 (608)
                                          ++|.+..+                         .+..|..+++|++|+|++|+ +..+|+
T Consensus        62 --------------------~~N~i~~~-------------------------~~~~~~~~~~L~~L~Ls~N~-l~~l~~   95 (192)
T d1w8aa_          62 --------------------KRNQLTGI-------------------------EPNAFEGASHIQELQLGENK-IKEISN   95 (192)
T ss_dssp             --------------------CSSCCCCB-------------------------CTTTTTTCTTCCEEECCSCC-CCEECS
T ss_pred             --------------------cccccccc-------------------------cccccccccccceeeecccc-ccccCH
Confidence                                44444433                         34556667888899999997 999999


Q ss_pred             ccCCCCCCCCEEEcCCCcccccCCCCC-CCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCC
Q psy3330         407 KLFQGNTNLKSVSLKGNSLSHLEASHF-PLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSIS  485 (608)
Q Consensus       407 ~~f~~l~~L~~L~L~~N~l~~l~~~~~-~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (608)
                      ++|.++++|++|+|++|+|++|+++.+ .+++|++++|++|||.|+|++.|+..|++...                    
T Consensus        96 ~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~--------------------  155 (192)
T d1w8aa_          96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS--------------------  155 (192)
T ss_dssp             SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC--------------------
T ss_pred             HHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhc--------------------
Confidence            999999999999999999999999887 68999999999999999999999999987321                    


Q ss_pred             CCCccchhhhhhhhhcCCcceeeccccccCCCCcccCCcccccCCCccccCCc
Q psy3330         486 PGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKGLEVKAVPENSVHCESN  538 (608)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~~~~~C~~~  538 (608)
                                           ...+..+|..|..++|..+.+++.+++.|...
T Consensus       156 ---------------------l~~~~~~c~~p~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         156 ---------------------LNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             ---------------------CSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred             ---------------------ccCCCeEeCCChhhcCCEeeecCHhhCcCCCC
Confidence                                 22356789999999999999999999999754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=4.9e-24  Score=195.66  Aligned_cols=140  Identities=26%  Similarity=0.426  Sum_probs=127.8

Q ss_pred             CCCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcc-cc-cccccCCCccEEEeeCCCCcccCcccccccc
Q psy3330          21 ICPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISN-VH-YTLSFYIELRSLDLSVNKINVLGSHNFEYQN   98 (608)
Q Consensus        21 ~Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~-l~-~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~   98 (608)
                      .||..|.|..  ..|+|++.++++||.++|+++++|+|++|.|+. ++ ..|.++++|+.|+|++|.+..+++..|..++
T Consensus         1 ~CP~~C~C~~--~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~   78 (192)
T d1w8aa_           1 DCPAMCHCEG--TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             CCCTTSEEET--TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CcCCCCEEcC--CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc
Confidence            4999999965  489999999999999999999999999999986 44 4678999999999999999999999999999


Q ss_pred             cccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccC
Q psy3330          99 KLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFE  162 (608)
Q Consensus        99 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  162 (608)
                      +|++|+|++|+|+.+++++|.++++|++|+|++|+|+.+++++|.++++|++|+|++|.+....
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999887654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.7e-22  Score=188.65  Aligned_cols=222  Identities=23%  Similarity=0.265  Sum_probs=152.5

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCC-CChhhhcCCCcCcEeeccC-
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA-LSKDTFKGLKELKTLDLSY-  131 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~-  131 (608)
                      +.++.++..++.+|..+.  +++++|++++|.|+.+++.+|.++++|++|++++|.+.. +++.+|.+++.++++.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            356666677777776442  466777777777777777667777777777777776653 4455566666666666543 


Q ss_pred             CcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCcc
Q psy3330         132 NKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIET  211 (608)
Q Consensus       132 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~  211 (608)
                      |++..+.+..|.++++|+.+++++|.+........+.                        .+  ..+..+...++.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~------------------------~l--~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH------------------------SL--QKVLLDIQDNINIHT  142 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTC------------------------BS--SCEEEEEESCTTCCE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccc------------------------cc--ccccccccccccccc
Confidence            4555555555555566666666555554432111111                        12  335555556666666


Q ss_pred             ccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhC
Q psy3330         212 VLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFK  291 (608)
Q Consensus       212 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~  291 (608)
                      +....|......++.+++++|+++.+....|....-++.+.+++|+++++++..|.++++|+.|++++|+++.+++..|.
T Consensus       143 i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         143 IERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             ccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            66666665234789999999999998887776554445556788999999988999999999999999999999998899


Q ss_pred             CCCCCceeeccC
Q psy3330         292 SLFSLKLVKINL  303 (608)
Q Consensus       292 ~l~~L~~L~l~~  303 (608)
                      ++++|+.+++..
T Consensus       223 ~l~~L~~l~~~~  234 (242)
T d1xwdc1         223 NLKKLRARSTYN  234 (242)
T ss_dssp             TCCEEESSSEES
T ss_pred             CCcccccCcCCC
Confidence            999888887754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=2.4e-19  Score=180.46  Aligned_cols=138  Identities=22%  Similarity=0.313  Sum_probs=74.4

Q ss_pred             eEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCC
Q psy3330          33 LEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISA  112 (608)
Q Consensus        33 ~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~  112 (608)
                      ..+++++.+++++|. .++++++|++++|+|+.+|..   ..+|+.|++++|+++.++.-    .+.|++|++++|.++.
T Consensus        41 ~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          41 HELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK  112 (353)
T ss_dssp             SEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS
T ss_pred             CEEEeCCCCCCCCCC-CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh----cccccccccccccccc
Confidence            456666666666664 445666666666666666543   23556666666666555421    1346666666666665


Q ss_pred             CChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCC
Q psy3330         113 LSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVP  187 (608)
Q Consensus       113 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  187 (608)
                      ++.  ++.+++|++|+++++.+...+.    ....+..+.+..+.....   ..+..++.++.+.+.+|....++
T Consensus       113 lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~---~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         113 LPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEEL---PELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             CCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC---CCCTTCTTCCEEECCSSCCSSCC
T ss_pred             ccc--hhhhccceeecccccccccccc----ccccccchhhcccccccc---ccccccccceecccccccccccc
Confidence            542  4455666666666665554322    123455555554443332   23445555666666655554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.8e-20  Score=181.68  Aligned_cols=249  Identities=28%  Similarity=0.397  Sum_probs=173.8

Q ss_pred             cCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEE
Q psy3330         123 ELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYL  202 (608)
Q Consensus       123 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L  202 (608)
                      ++++|+|++|+|+.+++.+|.++++|++|++++|++..+. +..+..+..++.+...                       
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~-----------------------   88 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLS-----------------------   88 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECC-----------------------
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccc-----------------------
Confidence            3444555555555444444555555555555555544444 3344444444443332                       


Q ss_pred             EccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCC
Q psy3330         203 YLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNF  282 (608)
Q Consensus       203 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  282 (608)
                        ..+.++.+.+..|.+ +++|++|++++|.+..+....+...++|+.+++++|++++++++.|..+++|+.|++++|.+
T Consensus        89 --~~~~~~~l~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          89 --DNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             --SCTTCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --cccccccccchhhcc-cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence              122333334445554 67777777777777777677777888999999999999999999999999999999999999


Q ss_pred             CccChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhhhccc
Q psy3330         283 SNIDSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVAFKSL  362 (608)
Q Consensus       283 ~~~~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~~~l  362 (608)
                      +++++.+|.++++|+.+++.++.        ..+-.|..+..             ..++++|++++|.+.++++..|..+
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~--------l~~i~~~~f~~-------------l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNR--------VAHVHPHAFRD-------------LGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSC--------CCEECTTTTTT-------------CTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             cccchhhhccccccchhhhhhcc--------ccccChhHhhh-------------hhhcccccccccccccccccccccc
Confidence            99999999999999999996432        22222222211             1245899999999999887665321


Q ss_pred             ccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcCCCcccccCCCCCCCCCCCEEE
Q psy3330         363 FSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLKGNSLSHLEASHFPLERISFLD  442 (608)
Q Consensus       363 ~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~  442 (608)
                                                                                               ++|++|+
T Consensus       225 -------------------------------------------------------------------------~~L~~L~  231 (284)
T d1ozna_         225 -------------------------------------------------------------------------RALQYLR  231 (284)
T ss_dssp             -------------------------------------------------------------------------TTCCEEE
T ss_pred             -------------------------------------------------------------------------cccCEEE
Confidence                                                                                     1345688


Q ss_pred             ccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhcCCcceeeccccccCCCCcccC
Q psy3330         443 LSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKNNHSLTIVLNNLKCSSPPDIKG  522 (608)
Q Consensus       443 L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g  522 (608)
                      +++|||.|||++.|+..|++..                                         .....+++|+.|.+++|
T Consensus       232 l~~N~l~C~C~~~~l~~~l~~~-----------------------------------------~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         232 LNDNPWVCDCRARPLWAWLQKF-----------------------------------------RGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             CCSSCEECSGGGHHHHHHHHHC-----------------------------------------CSEECCCBEEESGGGTT
T ss_pred             ecCCCCCCCccchHHHHHHHhC-----------------------------------------cCCCCceEeCCchHHcC
Confidence            9999999999999999999831                                         12335789999999999


Q ss_pred             CcccccCCCcc
Q psy3330         523 LEVKAVPENSV  533 (608)
Q Consensus       523 ~~~~~~~~~~~  533 (608)
                      +.+.+++.+++
T Consensus       271 ~~l~~l~~~~l  281 (284)
T d1ozna_         271 RDLKRLAANDL  281 (284)
T ss_dssp             CBGGGSCGGGS
T ss_pred             CccccCCHHHC
Confidence            99999988877

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=1.5e-18  Score=174.52  Aligned_cols=202  Identities=22%  Similarity=0.313  Sum_probs=126.0

Q ss_pred             ccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          51 PEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      .++++|+|+++.++.+|+.   .++|++|++++|+|+.+|..    ..+|++|++++|+++.++.  +  .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCS--C--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhh--h--cccccccccc
Confidence            4678888888888888753   46788888888888887642    4578888888888776652  1  1358888888


Q ss_pred             CCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCc
Q psy3330         131 YNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIE  210 (608)
Q Consensus       131 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~  210 (608)
                      +|.+..++.  +..+++|+.|+++++.+....  .   ....+..+.+..+......  .+..+  ..++.+++.+|.+.
T Consensus       107 ~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~--~---~~~~l~~l~~~~~~~~~~~--~l~~l--~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         107 NNQLEKLPE--LQNSSFLKIIDVDNNSLKKLP--D---LPPSLEFIAAGNNQLEELP--ELQNL--PFLTAIYADNNSLK  175 (353)
T ss_dssp             SSCCSSCCC--CTTCTTCCEEECCSSCCSCCC--C---CCTTCCEEECCSSCCSSCC--CCTTC--TTCCEEECCSSCCS
T ss_pred             ccccccccc--hhhhccceeeccccccccccc--c---ccccccchhhccccccccc--ccccc--ccceeccccccccc
Confidence            888877743  466778888888877776553  1   2345566666655443322  23334  34667777776665


Q ss_pred             cccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCcc
Q psy3330         211 TVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNI  285 (608)
Q Consensus       211 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  285 (608)
                      .....     ....+.+...++.+..+.  .+..++.|+.+++++|....++.    ...++..+.+.++.+...
T Consensus       176 ~~~~~-----~~~~~~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~~~~~~~----~~~~l~~~~~~~~~~~~~  239 (353)
T d1jl5a_         176 KLPDL-----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL  239 (353)
T ss_dssp             SCCCC-----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCC
T ss_pred             ccccc-----cccccccccccccccccc--ccccccccccccccccccccccc----cccccccccccccccccc
Confidence            44321     122344555555544432  24456677777777766655542    234566666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.7e-20  Score=163.56  Aligned_cols=143  Identities=20%  Similarity=0.238  Sum_probs=125.0

Q ss_pred             cEEecCCCCCCCcChhhhcccccccccccccCCCCCcCChhhhcCCcccceeecccCccccccCcccCCCCCCCCEEEcC
Q psy3330         342 DRLDLSGNNFSNIDSVAFKSLFSLKLVKINLIPNLDSIDQRAFVDNIQLETVIINENMNLKQLPSKLFQGNTNLKSVSLK  421 (608)
Q Consensus       342 ~~L~ls~n~l~~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~f~~l~~L~~L~Ls~N~~l~~lp~~~f~~l~~L~~L~L~  421 (608)
                      +.++++++++..++ ..+..+++|+.|++...+.++.+++.+|.++++|+.|++++|+ ++.|+.++|.++++|++|+|+
T Consensus        11 ~~l~c~~~~~~~~p-~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGALDSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCCTTT-TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCccCc-ccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceecc
Confidence            45788888888775 4477889999999987577999999999999999999999998 999999999999999999999


Q ss_pred             CCcccccCCCCCCCCCCCEEEccCCccccccCChHHHHHHHhhhccccccccceeccCCCccCCCCCccchhhhhhhhhc
Q psy3330         422 GNSLSHLEASHFPLERISFLDLSDNPLHCDCNLLWLWILVQLQVKSTMETTTVAYEMTSNTSISPGTTTEAQRVDRIIKN  501 (608)
Q Consensus       422 ~N~l~~l~~~~~~l~~L~~L~L~~N~~~CdC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (608)
                      +|+|+++|.+.+...+|+.|+|++|||.|||.+.|+..|.+....                                   
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~-----------------------------------  133 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLG-----------------------------------  133 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCS-----------------------------------
T ss_pred             CCCCcccChhhhccccccccccCCCcccCCchHHHHHHHHHhccC-----------------------------------
Confidence            999999999999777899999999999999999999999874311                                   


Q ss_pred             CCcceeeccccccCCCCcccCCcc
Q psy3330         502 NHSLTIVLNNLKCSSPPDIKGLEV  525 (608)
Q Consensus       502 ~~~~~~~~~~~~C~~p~~~~g~~~  525 (608)
                          .....+.+|.+|.+++|.+.
T Consensus       134 ----~~~~~~~~C~~p~~l~~~p~  153 (156)
T d2ifga3         134 ----GVPEQKLQCHGQGPLAHMPN  153 (156)
T ss_dssp             ----SCGGGCCCCSSSSCSSCCCC
T ss_pred             ----ccCcCCcEECcChHHCcCCc
Confidence                12345789999999988764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2.9e-18  Score=161.32  Aligned_cols=201  Identities=23%  Similarity=0.340  Sum_probs=128.3

Q ss_pred             EeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCC
Q psy3330          80 DLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT  159 (608)
Q Consensus        80 ~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  159 (608)
                      +++.++++++.  .++.+.+|++|++.+|.|+.+.  .+..+++|++|++++|.++.+.+  +..+++|+++++++|.++
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence            34444444332  3344555666666666665553  25556666666666666655432  555666666666666655


Q ss_pred             ccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCc
Q psy3330         160 YFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINE  239 (608)
Q Consensus       160 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  239 (608)
                      .+.   .+.++++|+.+.++++....+..  +...  ..+..+.++++.+....+  +.. .++|+.|++++|.+.... 
T Consensus        99 ~i~---~l~~l~~L~~l~l~~~~~~~~~~--~~~~--~~~~~l~~~~~~~~~~~~--~~~-~~~L~~L~l~~n~~~~~~-  167 (227)
T d1h6ua2          99 NVS---AIAGLQSIKTLDLTSTQITDVTP--LAGL--SNLQVLYLDLNQITNISP--LAG-LTNLQYLSIGNAQVSDLT-  167 (227)
T ss_dssp             CCG---GGTTCTTCCEEECTTSCCCCCGG--GTTC--TTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCCG-
T ss_pred             ccc---cccccccccccccccccccccch--hccc--cchhhhhchhhhhchhhh--hcc-ccccccccccccccccch-
Confidence            442   35556666666666665554433  2222  346666666666654432  343 677888888888876543 


Q ss_pred             ccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeecc
Q psy3330         240 SSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKIN  302 (608)
Q Consensus       240 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~  302 (608)
                       .+.++++|++|++++|+++++++  +.++++|++|+|++|+++++++  ++.+++|+.|+++
T Consensus       168 -~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 -PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             -hhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence             47788888899998888888764  7888889999999988888764  7788888888874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=3.1e-18  Score=161.08  Aligned_cols=206  Identities=25%  Similarity=0.366  Sum_probs=168.7

Q ss_pred             ccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCC
Q psy3330          53 VQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYN  132 (608)
Q Consensus        53 l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  132 (608)
                      +..++++.++++.+. .+..+.+|+.|++.+|+|++++  .+..+++|++|++++|.++.+.+  +.++++|+++++++|
T Consensus        21 ~~~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            344566666666543 4566788999999999999884  48889999999999999988764  889999999999999


Q ss_pred             cCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccc
Q psy3330         133 KISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETV  212 (608)
Q Consensus       133 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~  212 (608)
                      .++.+.  .+.++++|+.++++++......   .+...+.++.+.++.+.+....+  +...  ++++.|++++|.++..
T Consensus        96 ~~~~i~--~l~~l~~L~~l~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~--~~~~--~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2          96 PLKNVS--AIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP--LAGL--TNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             CCSCCG--GGTTCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GGGC--TTCCEEECCSSCCCCC
T ss_pred             cccccc--cccccccccccccccccccccc---hhccccchhhhhchhhhhchhhh--hccc--cccccccccccccccc
Confidence            988773  5788999999999998887653   36777899999999888776543  4445  5699999999988766


Q ss_pred             cCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCCChhhhhCCCCCCEEeccC
Q psy3330         213 LDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAIPTKQLSKLSALVNLDLSG  279 (608)
Q Consensus       213 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~l~~L~~L~Ls~  279 (608)
                      .+  +.. +++|+.|++++|+++.+.  .+.++++|++|++++|+++++++  +.++++|+.|++++
T Consensus       167 ~~--l~~-l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 TP--LAN-LSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             GG--GTT-CTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             hh--hcc-cccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            43  555 899999999999998864  37889999999999999999974  89999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6.8e-17  Score=148.27  Aligned_cols=161  Identities=31%  Similarity=0.428  Sum_probs=79.8

Q ss_pred             ccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccE
Q psy3330          96 YQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRI  175 (608)
Q Consensus        96 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  175 (608)
                      .++++++|++++|.++.+.  .+..+++|++|++++|+++++.+  ++++++|++|++++|.+..++   .+.++++|+.
T Consensus        38 ~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~  110 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT---PLANLTNLTG  110 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSE
T ss_pred             HhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc---cccccccccc
Confidence            3445555555555555543  24455555555555555555432  455555555555555554442   2445555555


Q ss_pred             EEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccC
Q psy3330         176 LKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN  255 (608)
Q Consensus       176 L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  255 (608)
                      |+++++....++.  +..                           +++|+.|++++|.+..+  ..+.++++|+.|++++
T Consensus       111 L~l~~~~~~~~~~--~~~---------------------------l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~  159 (199)
T d2omxa2         111 LTLFNNQITDIDP--LKN---------------------------LTNLNRLELSSNTISDI--SALSGLTSLQQLNFSS  159 (199)
T ss_dssp             EECCSSCCCCCGG--GTT---------------------------CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCS
T ss_pred             ccccccccccccc--cch---------------------------hhhhHHhhhhhhhhccc--cccccccccccccccc
Confidence            5555544433221  112                           44444555555544433  1244455555555555


Q ss_pred             CcCCCCChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCce
Q psy3330         256 NNLSAIPTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKL  298 (608)
Q Consensus       256 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~  298 (608)
                      |+++++++  ++++++|+.|++++|++++++  .++.+++|+.
T Consensus       160 n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~  198 (199)
T d2omxa2         160 NQVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLES  198 (199)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCSE
T ss_pred             ccccCCcc--ccCCCCCCEEECCCCCCCCCc--cccCCCCCCc
Confidence            55555542  555555555555555555543  2444555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.3e-17  Score=149.02  Aligned_cols=162  Identities=27%  Similarity=0.346  Sum_probs=113.1

Q ss_pred             EEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCC
Q psy3330         102 NLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNN  181 (608)
Q Consensus       102 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  181 (608)
                      .+.++.+.+++...  ...+.++++|++++|+++.+.  .+..+++|++|++++|+++++. +  +.++++|++|++++|
T Consensus        22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~-~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT-P--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG-G--GTTCTTCCEEECCSS
T ss_pred             HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCcc-c--ccCCccccccccccc
Confidence            34455555554432  234556666777776666553  3455666666666666666553 2  556666666666655


Q ss_pred             CCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCCcCCCC
Q psy3330         182 QILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNNNLSAI  261 (608)
Q Consensus       182 ~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  261 (608)
                      .+..+++                            +.. ++.|+.|+++++....+  ..+..+++|+.|++++|++..+
T Consensus        95 ~~~~~~~----------------------------l~~-l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~  143 (199)
T d2omxa2          95 QIADITP----------------------------LAN-LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI  143 (199)
T ss_dssp             CCCCCGG----------------------------GTT-CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC
T ss_pred             ccccccc----------------------------ccc-ccccccccccccccccc--cccchhhhhHHhhhhhhhhccc
Confidence            5443321                            333 67788888888877665  3477899999999999999988


Q ss_pred             ChhhhhCCCCCCEEeccCCCCCccChhhhCCCCCCceeeccCCC
Q psy3330         262 PTKQLSKLSALVNLDLSGNNFSNIDSVAFKSLFSLKLVKINLIP  305 (608)
Q Consensus       262 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~l~~~~  305 (608)
                      +  .+..+++|+.|++++|+++++++  ++++++|+.|++++++
T Consensus       144 ~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         144 S--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK  183 (199)
T ss_dssp             G--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             c--cccccccccccccccccccCCcc--ccCCCCCCEEECCCCC
Confidence            6  48899999999999999998764  8899999999998653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=9.3e-17  Score=148.65  Aligned_cols=163  Identities=31%  Similarity=0.396  Sum_probs=77.2

Q ss_pred             cccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEE
Q psy3330          97 QNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRIL  176 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  176 (608)
                      +.+|++|++++|.++.+..  +..+++|++|++++|+++++++  ++.+++|++|++++|+++.++   .+.++++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS---SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG---GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc---ccccccccccc
Confidence            4455566666666555542  4555566666666666655532  445566666666666655542   25555566666


Q ss_pred             EccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCCCccccCCCccEEEccCCCCCccCcccccCCCccCEEeccCC
Q psy3330         177 KLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDNSFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSNN  256 (608)
Q Consensus       177 ~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  256 (608)
                      ++++|.+..++.  +..+  +.++.+++++|.+++..  .+.. +++|+.+++++|.++++.  .+.++++|++|++++|
T Consensus       118 ~l~~~~~~~~~~--l~~l--~~l~~l~~~~n~l~~~~--~~~~-l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         118 SLEHNGISDING--LVHL--PQLESLYLGNNKITDIT--VLSR-LTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             ECTTSCCCCCGG--GGGC--TTCCEEECCSSCCCCCG--GGGG-CTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             cccccccccccc--cccc--ccccccccccccccccc--cccc-cccccccccccccccccc--cccCCCCCCEEECCCC
Confidence            665555443321  2222  22444444444333221  1111 444444444444444332  1344444444444444


Q ss_pred             cCCCCChhhhhCCCCCCEEec
Q psy3330         257 NLSAIPTKQLSKLSALVNLDL  277 (608)
Q Consensus       257 ~l~~l~~~~~~~l~~L~~L~L  277 (608)
                      ++++++  .+.++++|+.|+|
T Consensus       189 ~i~~l~--~l~~l~~L~~L~L  207 (210)
T d1h6ta2         189 HISDLR--ALAGLKNLDVLEL  207 (210)
T ss_dssp             CCCBCG--GGTTCTTCSEEEE
T ss_pred             CCCCCh--hhcCCCCCCEEEc
Confidence            444443  2444444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.1e-16  Score=148.13  Aligned_cols=181  Identities=26%  Similarity=0.330  Sum_probs=140.6

Q ss_pred             EEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCC
Q psy3330          56 IILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKIS  135 (608)
Q Consensus        56 L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  135 (608)
                      ..+..+.++.... ...+.+|++|++++|.++.+..  +..+++|++|++++|+|+.+++  +..+++|++|++++|+++
T Consensus        29 ~~l~~~~~~~~~~-~~~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          29 DNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HHhCcCccCCccC-HHHhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccc--cccCcccccccccccccc
Confidence            3455555554321 1345678888999988887753  6788899999999999888764  678889999999999888


Q ss_pred             ccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCcccccCCCCCCceEEEccCCCCccccCC
Q psy3330         136 VINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPNNVLSNLPHQSLHYLYLNENLIETVLDN  215 (608)
Q Consensus       136 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  215 (608)
                      .++  .+.++++|+.|++++|.+..+.   .+..+++++.+++++|.++..+.  +..+  ++|+.+++++|+++++.+ 
T Consensus       104 ~l~--~l~~l~~L~~L~l~~~~~~~~~---~l~~l~~l~~l~~~~n~l~~~~~--~~~l--~~L~~l~l~~n~l~~i~~-  173 (210)
T d1h6ta2         104 DLS--SLKDLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDITV--LSRL--TKLDTLSLEDNQISDIVP-  173 (210)
T ss_dssp             CGG--GGTTCTTCCEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG--GGGC--TTCSEEECCSSCCCCCGG-
T ss_pred             ccc--cccccccccccccccccccccc---ccccccccccccccccccccccc--cccc--cccccccccccccccccc-
Confidence            774  5788889999999988887653   47788899999999988876543  4455  569999999999887653 


Q ss_pred             CccccCCCccEEEccCCCCCccCcccccCCCccCEEeccC
Q psy3330         216 SFPFTLTNLHTLALSSNIISFINESSFVTLRTLHSLDLSN  255 (608)
Q Consensus       216 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  255 (608)
                       +.. +++|+.|++++|.++.+.  .+.++++|++|+|++
T Consensus       174 -l~~-l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 -LAG-LTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GTT-CTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             -ccC-CCCCCEEECCCCCCCCCh--hhcCCCCCCEEEccC
Confidence             555 889999999999998763  588899999999864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-18  Score=182.40  Aligned_cols=381  Identities=17%  Similarity=0.126  Sum_probs=210.1

Q ss_pred             ccccEEEeccCCCccc--ccccccCCCccEEEeeCCCCcccC----cccccccccccEEEccCCCCCCCChhhh----c-
Q psy3330          51 PEVQTIILRENRISNV--HYTLSFYIELRSLDLSVNKINVLG----SHNFEYQNKLLNLNISYNEISALSKDTF----K-  119 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~l--~~~~~~~~~L~~L~Ls~n~l~~i~----~~~f~~l~~L~~L~Ls~n~i~~~~~~~~----~-  119 (608)
                      .++++||+++|+++..  ..-+..+++++.|+|++|+++...    ..++..+++|++|+|++|.|+......+    . 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4689999999999864  345677889999999999887533    2346778899999999998864322222    2 


Q ss_pred             CCCcCcEeeccCCcCCccC----hhhhCCCCCCcEEEccCCCCCccCchhhh-----cCCCCccEEEccCCCCCCCCcc-
Q psy3330         120 GLKELKTLDLSYNKISVIN----KTAFRDTLHLELLILSFNNITYFEDSEIF-----SSLKSLRILKLDNNQILDVPNN-  189 (608)
Q Consensus       120 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~-  189 (608)
                      ...+|++|+|++|+++...    +..+..+++|++|++++|.+.... ...+     ...................... 
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG-LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhh-hhhhhhcccccccccccccccccccchhhhcc
Confidence            2357999999999987643    345678899999999999886543 1111     1122233333333322211100 


Q ss_pred             ---cccCCCCCCceEEEccCCCCccccC----CCccccCCCccEEEccCCCCCccC----cccccCCCccCEEeccCCcC
Q psy3330         190 ---VLSNLPHQSLHYLYLNENLIETVLD----NSFPFTLTNLHTLALSSNIISFIN----ESSFVTLRTLHSLDLSNNNL  258 (608)
Q Consensus       190 ---~~~~l~~~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l  258 (608)
                         .+...  ..++.++++++.......    ..+.........+.+.++.+....    ...+...+.++.+++++|++
T Consensus       161 ~~~~l~~~--~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         161 LASVLRAK--PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHC--TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccc--cccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence               01111  335566666554432110    001111223445555555443211    11223345566666666654


Q ss_pred             CC-----CChhhhhCCCCCCEEeccCCCCCccCh----hhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhcccccc
Q psy3330         259 SA-----IPTKQLSKLSALVNLDLSGNNFSNIDS----VAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPL  329 (608)
Q Consensus       259 ~~-----l~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~  329 (608)
                      ..     ...........++.+++++|.+.....    ..+...+.++.+++++++        ........+..     
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~--------i~~~~~~~l~~-----  305 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE--------LGDEGARLLCE-----  305 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC--------CHHHHHHHHHH-----
T ss_pred             cccccchhhccccccccccccccccccccccccccccccccccccccccccccccc--------ccccccchhhc-----
Confidence            32     111223344566666666666554322    122344555555553221        10000000000     


Q ss_pred             ccccCCCCCceecEEecCCCCCCCcChhhh----cccccccccccccCCCCCcCChhh----h-cCCcccceeecccCcc
Q psy3330         330 AFSLTPLGTLKCDRLDLSGNNFSNIDSVAF----KSLFSLKLVKINLIPNLDSIDQRA----F-VDNIQLETVIINENMN  400 (608)
Q Consensus       330 ~~~~~~~~~~~l~~L~ls~n~l~~~~~~~~----~~l~~L~~l~l~~~~~l~~~~~~~----f-~~l~~L~~L~Ls~N~~  400 (608)
                         ........++.+++++|.++......+    ....+|+.|+++. +.+...+...    + ...+.|++|+|++|. 
T Consensus       306 ---~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-  380 (460)
T d1z7xw1         306 ---TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADCD-  380 (460)
T ss_dssp             ---HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-
T ss_pred             ---cccccccccccccccccchhhhhhhhcccccccccchhhhheee-ecccCcccchhhhhhhcccCCCCEEECCCCC-
Confidence               000011134677777777766544433    3344677777766 4554322222    2 346779999999997 


Q ss_pred             ccc-----cCcccCCCCCCCCEEEcCCCcccc-----cCCCCC-CCCCCCEEEccCCccccccC
Q psy3330         401 LKQ-----LPSKLFQGNTNLKSVSLKGNSLSH-----LEASHF-PLERISFLDLSDNPLHCDCN  453 (608)
Q Consensus       401 l~~-----lp~~~f~~l~~L~~L~L~~N~l~~-----l~~~~~-~l~~L~~L~L~~N~~~CdC~  453 (608)
                      ++.     ++. ++..+++|++|||++|+|+.     +...+. ....|+.|++.+|+|..+..
T Consensus       381 i~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         381 VSDSSCSSLAA-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             CCHHHHHHHHH-HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             CChHHHHHHHH-HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            654     322 25567899999999999873     222222 23479999999999986543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-17  Score=173.56  Aligned_cols=356  Identities=17%  Similarity=0.149  Sum_probs=227.2

Q ss_pred             CCccEEEeeCCCCcccC-cccccccccccEEEccCCCCCCCC----hhhhcCCCcCcEeeccCCcCCccChh----hhC-
Q psy3330          74 IELRSLDLSVNKINVLG-SHNFEYQNKLLNLNISYNEISALS----KDTFKGLKELKTLDLSYNKISVINKT----AFR-  143 (608)
Q Consensus        74 ~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~-  143 (608)
                      ++|+.||+++|++++.. ...+..++++++|+|++|.++...    ..++..+++|++|+|++|.|+.....    .+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999998754 234667899999999999987432    24567899999999999998643222    222 


Q ss_pred             CCCCCcEEEccCCCCCccCc---hhhhcCCCCccEEEccCCCCCCCCccccc----CCCCCCceEEEccCCCCccccC--
Q psy3330         144 DTLHLELLILSFNNITYFED---SEIFSSLKSLRILKLDNNQILDVPNNVLS----NLPHQSLHYLYLNENLIETVLD--  214 (608)
Q Consensus       144 ~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~~~L~~L~L~~n~l~~~~~--  214 (608)
                      ...+|++|++++|.++....   +..+..+++|++|++++|.+.......+.    ... ............+.....  
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ-CRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCBGGGHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccc-cccccccccccccchhhhcc
Confidence            33589999999999876431   34577889999999999987643221111    110 223344444433322111  


Q ss_pred             --CCccccCCCccEEEccCCCCCccCc----ccc-cCCCccCEEeccCCcCCCCCh----hhhhCCCCCCEEeccCCCCC
Q psy3330         215 --NSFPFTLTNLHTLALSSNIISFINE----SSF-VTLRTLHSLDLSNNNLSAIPT----KQLSKLSALVNLDLSGNNFS  283 (608)
Q Consensus       215 --~~~~~~l~~L~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~Ls~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~  283 (608)
                        ..+.. ...++.+.++++.......    ..+ ........+++..+.+.....    ..+...+.++.+++++|.+.
T Consensus       161 ~~~~l~~-~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         161 LASVLRA-KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence              11222 5678889988877642110    111 223456678888876654321    24566789999999999875


Q ss_pred             cc-----ChhhhCCCCCCceeeccCCCCCCCCCcccccCCchhhhccccccccccCCCCCceecEEecCCCCCCCcChhh
Q psy3330         284 NI-----DSVAFKSLFSLKLVKINLIPNLDSIDQPLSLSLPPLLLSLSIPLAFSLTPLGTLKCDRLDLSGNNFSNIDSVA  358 (608)
Q Consensus       284 ~~-----~~~~f~~l~~L~~L~l~~~~~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~l~~L~ls~n~l~~~~~~~  358 (608)
                      ..     ....+.....++.++++++....    ...+.....+..             ...++.+++++|.+++.....
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~----~~~~~~~~~l~~-------------~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITA----KGCGDLCRVLRA-------------KESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCH----HHHHHHHHHHHH-------------CTTCCEEECTTCCCHHHHHHH
T ss_pred             ccccchhhcccccccccccccccccccccc----cccccccccccc-------------cccccccccccccccccccch
Confidence            42     22334567789999996432110    000001111111             113478999999987643333


Q ss_pred             h-----cccccccccccccCCCCCcCChh----hhcCCcccceeecccCccccc-----cCcccCCCCCCCCEEEcCCCc
Q psy3330         359 F-----KSLFSLKLVKINLIPNLDSIDQR----AFVDNIQLETVIINENMNLKQ-----LPSKLFQGNTNLKSVSLKGNS  424 (608)
Q Consensus       359 ~-----~~l~~L~~l~l~~~~~l~~~~~~----~f~~l~~L~~L~Ls~N~~l~~-----lp~~~f~~l~~L~~L~L~~N~  424 (608)
                      +     .....|+.++++. +.+......    .+..+++|++|+|++|+ ++.     +........+.|++|+|++|+
T Consensus       303 l~~~l~~~~~~L~~l~l~~-~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKS-CSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             hhccccccccccccccccc-cchhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCCC
Confidence            2     2345688888876 445544433    33456789999999997 643     444433457889999999999


Q ss_pred             ccc-----cCCCCCCCCCCCEEEccCCcccc
Q psy3330         425 LSH-----LEASHFPLERISFLDLSDNPLHC  450 (608)
Q Consensus       425 l~~-----l~~~~~~l~~L~~L~L~~N~~~C  450 (608)
                      |+.     |.+.+..+++|++|+|++|++..
T Consensus       381 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         381 VSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            974     44444457899999999999974

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.4e-16  Score=136.55  Aligned_cols=124  Identities=19%  Similarity=0.248  Sum_probs=67.7

Q ss_pred             cccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccC
Q psy3330          52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSY  131 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  131 (608)
                      ++++|+|++|+|+.++..+..+++|+.|+|++|.|+.++  .|..+++|++|++++|+++.+++..+..+++|++|++++
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            455566666666655544455555666666666665553  255555666666666666555555555555666666666


Q ss_pred             CcCCccCh-hhhCCCCCCcEEEccCCCCCccCc--hhhhcCCCCccEEE
Q psy3330         132 NKISVINK-TAFRDTLHLELLILSFNNITYFED--SEIFSSLKSLRILK  177 (608)
Q Consensus       132 n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~  177 (608)
                      |+++.++. ..+..+++|++|++++|+++..+.  +..+..+++|+.||
T Consensus        97 N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          97 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            65555433 345555555555555555544421  12344555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.4e-16  Score=134.73  Aligned_cols=115  Identities=23%  Similarity=0.288  Sum_probs=84.6

Q ss_pred             CCCCceecCCceEEEecCCCCccccCccCccccEEEeccCCCcccccccccCCCccEEEeeCC-CCcccCcccccccccc
Q psy3330          22 CPSRCQCFDQKLEASCTDAGLEVVPIQLNPEVQTIILRENRISNVHYTLSFYIELRSLDLSVN-KINVLGSHNFEYQNKL  100 (608)
Q Consensus        22 Cp~~C~c~~~~~~v~C~~~~l~~ip~~~~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n-~l~~i~~~~f~~l~~L  100 (608)
                      ||..|.|... ..++|++.++.++|..++                     .+++|++|++++| .++.+++.+|.++++|
T Consensus         1 CP~~C~c~~~-~~l~c~~~~~~~~p~~l~---------------------~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L   58 (156)
T d2ifga3           1 CPDACCPHGS-SGLRCTRDGALDSLHHLP---------------------GAENLTELYIENQQHLQHLELRDLRGLGEL   58 (156)
T ss_dssp             CCSSSCCSSS-SCEECCSSCCCTTTTTSC---------------------SCSCCSEEECCSCSSCCEECGGGSCSCCCC
T ss_pred             CcCCCCcCCC-CeEEecCCCCccCccccc---------------------CccccCeeecCCCccccccCchhhcccccc
Confidence            9999999743 469999999888876554                     3556666777655 4777777777777777


Q ss_pred             cEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCC
Q psy3330         101 LNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNIT  159 (608)
Q Consensus       101 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  159 (608)
                      +.|+|++|+|+.+++++|.++++|++|+|++|+|+.+++..|..+ +|+.|+|++|.+.
T Consensus        59 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            777777777777777777777777777777777777776666554 5777777777764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=4.4e-15  Score=124.18  Aligned_cols=119  Identities=21%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             cEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCc
Q psy3330          54 QTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNK  133 (608)
Q Consensus        54 ~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  133 (608)
                      |.|+|++|+++.++. +..+++|++|++++|.|+.+|+ .|+.+++|++|++++|.|+.++  .+..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCCc
Confidence            456777777776653 5666677777777777776654 4666777777777777776664  36666777777777777


Q ss_pred             CCccCh-hhhCCCCCCcEEEccCCCCCccCc--hhhhcCCCCccEE
Q psy3330         134 ISVINK-TAFRDTLHLELLILSFNNITYFED--SEIFSSLKSLRIL  176 (608)
Q Consensus       134 l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L  176 (608)
                      ++.++. ..+..+++|+.|++++|++...+.  ......+++|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            666543 456666666667766666654321  2233344555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2e-15  Score=132.87  Aligned_cols=117  Identities=29%  Similarity=0.289  Sum_probs=96.9

Q ss_pred             ccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCC
Q psy3330          69 TLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHL  148 (608)
Q Consensus        69 ~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  148 (608)
                      .+.+..+++.|+|++|+|+.++ ..+..+++|++|+|++|.|+.++  .|..+++|++|++++|+++.+++..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccc
Confidence            4567788999999999999886 46678889999999999998885  48888999999999999998887777888899


Q ss_pred             cEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCCCc
Q psy3330         149 ELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDVPN  188 (608)
Q Consensus       149 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  188 (608)
                      +.|++++|+++.+.....+..+++|++|++++|.++..+.
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccc
Confidence            9999999998887533567888888888888888776653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.8e-14  Score=119.21  Aligned_cols=106  Identities=24%  Similarity=0.300  Sum_probs=86.4

Q ss_pred             cEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCC
Q psy3330          77 RSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFN  156 (608)
Q Consensus        77 ~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  156 (608)
                      |.|+|++|+++.++.  +..+++|++|++++|+|+.+++ .|..+++|+.|++++|.|+.++  .+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            578899999988763  7888899999999999988875 5888889999999999888874  4788888999999998


Q ss_pred             CCCccCchhhhcCCCCccEEEccCCCCCCCC
Q psy3330         157 NITYFEDSEIFSSLKSLRILKLDNNQILDVP  187 (608)
Q Consensus       157 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  187 (608)
                      ++..++....+..+++|++|++++|.++..+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            8887764456788888888888888776543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.9e-14  Score=137.16  Aligned_cols=183  Identities=18%  Similarity=0.162  Sum_probs=101.3

Q ss_pred             cccccEEEccCCCCCCC-ChhhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCC-CCCccCchhhhcCCCCcc
Q psy3330          97 QNKLLNLNISYNEISAL-SKDTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFN-NITYFEDSEIFSSLKSLR  174 (608)
Q Consensus        97 l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~  174 (608)
                      ..+|++|+++++.++.. ....+.++++|++|+++++.++......+..+++|++|+++++ .++.......+.++++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34566666666655432 1233556666666666666665544455666666666666664 343322122344566666


Q ss_pred             EEEccCCC-CCCCC-cccccCCCCCCceEEEccCC--CCccccCCCccccCCCccEEEccCC-CCCccCcccccCCCccC
Q psy3330         175 ILKLDNNQ-ILDVP-NNVLSNLPHQSLHYLYLNEN--LIETVLDNSFPFTLTNLHTLALSSN-IISFINESSFVTLRTLH  249 (608)
Q Consensus       175 ~L~L~~n~-l~~~~-~~~~~~l~~~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  249 (608)
                      +|+++++. ++... ...+.... +.++.|+++++  .++...-..+...+++|++|++++| .++......+..+++|+
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVS-ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSC-TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ccccccccccccccchhhhcccc-cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            66666642 22100 01111111 34667776653  2322111122223677888888775 45555555667778888


Q ss_pred             EEeccCC-cCCCCChhhhhCCCCCCEEeccCC
Q psy3330         250 SLDLSNN-NLSAIPTKQLSKLSALVNLDLSGN  280 (608)
Q Consensus       250 ~L~Ls~n-~l~~l~~~~~~~l~~L~~L~Ls~N  280 (608)
                      +|++++| .+++-....+.++++|+.|+++++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            8888874 555443345677888888888776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.2e-14  Score=135.27  Aligned_cols=234  Identities=18%  Similarity=0.100  Sum_probs=141.5

Q ss_pred             cccEEEeccCCCcccccccccCCCccEEEeeCCCCccc-CcccccccccccEEEccCCCCCCCChhhhcCCCcCcEeecc
Q psy3330          52 EVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVL-GSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLS  130 (608)
Q Consensus        52 ~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i-~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  130 (608)
                      .+..+.++...+...........+|++||++++.++.. ....+.++++|++|+|+++.++......+..+++|++|+++
T Consensus        24 ~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            34455555444443323334455778888887776542 22346677888888888887776555667777888888887


Q ss_pred             CC-cCCccCh-hhhCCCCCCcEEEccCCC-CCccCchhhhc-CCCCccEEEccCCC--CCCCCc-ccccCCCCCCceEEE
Q psy3330         131 YN-KISVINK-TAFRDTLHLELLILSFNN-ITYFEDSEIFS-SLKSLRILKLDNNQ--ILDVPN-NVLSNLPHQSLHYLY  203 (608)
Q Consensus       131 ~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~l~~L~~L~L~~n~--l~~~~~-~~~~~l~~~~L~~L~  203 (608)
                      ++ .++...- ..+.++++|++|+++++. ++.......+. ..++|+.|+++++.  ++...- .....+  ++|++|+
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~--~~L~~L~  181 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC--PNLVHLD  181 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC--TTCSEEE
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccc--ccccccc
Confidence            74 4543211 223457788888887753 43321122232 34678888887642  221111 112234  4588888


Q ss_pred             ccCC-CCccccCCCccccCCCccEEEccCC-CCCccCcccccCCCccCEEeccCCcCCCCC-hhhhhCCCCCCEEeccCC
Q psy3330         204 LNEN-LIETVLDNSFPFTLTNLHTLALSSN-IISFINESSFVTLRTLHSLDLSNNNLSAIP-TKQLSKLSALVNLDLSGN  280 (608)
Q Consensus       204 L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~l~~L~~L~Ls~N  280 (608)
                      ++++ .+++.....+.. +++|++|+++++ .++......+..+++|+.|+++++ ++.-. ......+|+|+   +..+
T Consensus       182 L~~~~~itd~~~~~l~~-~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~  256 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCS  256 (284)
T ss_dssp             CTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCC
T ss_pred             cccccCCCchhhhhhcc-cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCc
Confidence            8875 456555556665 889999999985 566555566788899999999987 43322 22334566665   5667


Q ss_pred             CCCccChhhhCC
Q psy3330         281 NFSNIDSVAFKS  292 (608)
Q Consensus       281 ~l~~~~~~~f~~  292 (608)
                      .++.+.+..++.
T Consensus       257 ~ls~~~~~~~~~  268 (284)
T d2astb2         257 HFTTIARPTIGN  268 (284)
T ss_dssp             CSCCTTCSSCSS
T ss_pred             cCCCCCCCccCc
Confidence            777765554544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=3.4e-13  Score=134.53  Aligned_cols=231  Identities=21%  Similarity=0.219  Sum_probs=112.8

Q ss_pred             ccccEEEeccCCCcc-----cccccccCCCccEEEeeCCCCcccCc----------ccccccccccEEEccCCCCCCCCh
Q psy3330          51 PEVQTIILRENRISN-----VHYTLSFYIELRSLDLSVNKINVLGS----------HNFEYQNKLLNLNISYNEISALSK  115 (608)
Q Consensus        51 ~~l~~L~L~~n~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~i~~----------~~f~~l~~L~~L~Ls~n~i~~~~~  115 (608)
                      .+++.|+|++|.+..     +...+...++|+.|+++++.......          ..+...++|++|+|++|.++....
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            457777777776643     22345666777777777664432211          123445667777777776665432


Q ss_pred             h----hhcCCCcCcEeeccCCcCCccChh-------------hhCCCCCCcEEEccCCCCCccCc---hhhhcCCCCccE
Q psy3330         116 D----TFKGLKELKTLDLSYNKISVINKT-------------AFRDTLHLELLILSFNNITYFED---SEIFSSLKSLRI  175 (608)
Q Consensus       116 ~----~~~~l~~L~~L~Ls~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~  175 (608)
                      .    .+...++|++|++++|.+......             .....+.|+.+++++|.+.....   ...+...++|++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence            2    233456677777777665421111             11234566666666666553220   122344566666


Q ss_pred             EEccCCCCCCC-----CcccccCCCCCCceEEEccCCCCcccc----CCCccccCCCccEEEccCCCCCccCccc----c
Q psy3330         176 LKLDNNQILDV-----PNNVLSNLPHQSLHYLYLNENLIETVL----DNSFPFTLTNLHTLALSSNIISFINESS----F  242 (608)
Q Consensus       176 L~L~~n~l~~~-----~~~~~~~l~~~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~  242 (608)
                      |++++|++..-     ....+...  ++|+.|++++|.++...    ...+.. .++|++|++++|.++......    +
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~--~~L~~L~Ls~N~i~~~g~~~L~~~l~~-~~~L~~L~Ls~n~i~~~g~~~l~~~l  267 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYC--QELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVDAF  267 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGC--TTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhhhcch--hhhcccccccccccccccccccccccc-cccchhhhhhcCccCchhhHHHHHHh
Confidence            66666665421     01112223  33556666665554321    112222 455555565555554321111    1


Q ss_pred             c--CCCccCEEeccCCcCCCCC----hhhh-hCCCCCCEEeccCCCCCc
Q psy3330         243 V--TLRTLHSLDLSNNNLSAIP----TKQL-SKLSALVNLDLSGNNFSN  284 (608)
Q Consensus       243 ~--~l~~L~~L~Ls~n~l~~l~----~~~~-~~l~~L~~L~Ls~N~l~~  284 (608)
                      .  ....|++|++++|+++.--    ...+ .++++|+.|+|++|.+..
T Consensus       268 ~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            1  1234555555555544311    0112 234555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=8.3e-15  Score=133.51  Aligned_cols=131  Identities=24%  Similarity=0.312  Sum_probs=100.0

Q ss_pred             ccccEEEeccC--CCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhhcCCCcCcEee
Q psy3330          51 PEVQTIILREN--RISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLD  128 (608)
Q Consensus        51 ~~l~~L~L~~n--~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  128 (608)
                      ...+.+++++.  .++.++.++..+++|++|+|++|+|+.++  .+.++++|++|+|++|.|+.++. .+..+++|+.|+
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~   99 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELW   99 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEE
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc--cccCCccccChhhcccccccccc-cccccccccccc
Confidence            34555666554  46667778888889999999999888875  47888899999999998888763 344556788999


Q ss_pred             ccCCcCCccChhhhCCCCCCcEEEccCCCCCccCchhhhcCCCCccEEEccCCCCCCC
Q psy3330         129 LSYNKISVINKTAFRDTLHLELLILSFNNITYFEDSEIFSSLKSLRILKLDNNQILDV  186 (608)
Q Consensus       129 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  186 (608)
                      +++|+++.+  ..+.++++|++|++++|+++.+.....+..+++|+.|++++|.+...
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            999988876  34677788889999988888764235678888888888888876543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.26  E-value=1.6e-12  Score=129.59  Aligned_cols=236  Identities=19%  Similarity=0.148  Sum_probs=167.6

Q ss_pred             cccccccCCCccEEEeeCCCCcccCc----ccccccccccEEEccCCCCCCCC----------hhhhcCCCcCcEeeccC
Q psy3330          66 VHYTLSFYIELRSLDLSVNKINVLGS----HNFEYQNKLLNLNISYNEISALS----------KDTFKGLKELKTLDLSY  131 (608)
Q Consensus        66 l~~~~~~~~~L~~L~Ls~n~l~~i~~----~~f~~l~~L~~L~Ls~n~i~~~~----------~~~~~~l~~L~~L~Ls~  131 (608)
                      +..++.....|+.|+|++|.+.....    ..+...+.|+.|+++++......          ..++...++|++|+|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            33467788999999999998865322    24567899999999987655332          13456788999999999


Q ss_pred             CcCCccCh----hhhCCCCCCcEEEccCCCCCccCc------------hhhhcCCCCccEEEccCCCCCCCCcc----cc
Q psy3330         132 NKISVINK----TAFRDTLHLELLILSFNNITYFED------------SEIFSSLKSLRILKLDNNQILDVPNN----VL  191 (608)
Q Consensus       132 n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~------------~~~~~~l~~L~~L~L~~n~l~~~~~~----~~  191 (608)
                      |.++....    ..+...++|+.|++++|.+.....            .......+.|+.+.+++|.+..-...    .+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            99876533    344567899999999998754210            01124567899999999987643222    22


Q ss_pred             cCCCCCCceEEEccCCCCccc-----cCCCccccCCCccEEEccCCCCCcc----CcccccCCCccCEEeccCCcCCCCC
Q psy3330         192 SNLPHQSLHYLYLNENLIETV-----LDNSFPFTLTNLHTLALSSNIISFI----NESSFVTLRTLHSLDLSNNNLSAIP  262 (608)
Q Consensus       192 ~~l~~~~L~~L~L~~n~l~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~  262 (608)
                      ...  ..++.|++++|.+...     ....+.. .++|+.|++++|.++..    ....+..+++|++|+|++|.+++..
T Consensus       183 ~~~--~~L~~L~L~~n~i~~~g~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         183 QSH--RLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             HHC--TTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             hhh--hhhcccccccccccccccccchhhhhcc-hhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence            334  5699999999998742     2344555 88999999999998642    1245677899999999999987643


Q ss_pred             hh----hhhC--CCCCCEEeccCCCCCccChhh----h-CCCCCCceeeccCC
Q psy3330         263 TK----QLSK--LSALVNLDLSGNNFSNIDSVA----F-KSLFSLKLVKINLI  304 (608)
Q Consensus       263 ~~----~~~~--l~~L~~L~Ls~N~l~~~~~~~----f-~~l~~L~~L~l~~~  304 (608)
                      ..    .+..  .+.|++|++++|+++......    + ..+++|+.|+++++
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            22    2333  467999999999987533222    2 35778999999653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=7.6e-14  Score=127.01  Aligned_cols=133  Identities=29%  Similarity=0.301  Sum_probs=108.5

Q ss_pred             CCccccCcc--CccccEEEeccCCCcccccccccCCCccEEEeeCCCCcccCcccccccccccEEEccCCCCCCCChhhh
Q psy3330          41 GLEVVPIQL--NPEVQTIILRENRISNVHYTLSFYIELRSLDLSVNKINVLGSHNFEYQNKLLNLNISYNEISALSKDTF  118 (608)
Q Consensus        41 ~l~~ip~~~--~~~l~~L~L~~n~i~~l~~~~~~~~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~  118 (608)
                      .++.+|..+  .+++++|+|++|+|+.++ .+..+++|++|++++|.|+.++. .+..+++|++|++++|+++.++  .+
T Consensus        36 ~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~--~~  111 (198)
T d1m9la_          36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GI  111 (198)
T ss_dssp             TCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHH--HH
T ss_pred             chhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccc-cccccccccccccccccccccc--cc
Confidence            455555444  468999999999999986 58899999999999999998874 4556778999999999999874  48


Q ss_pred             cCCCcCcEeeccCCcCCccCh-hhhCCCCCCcEEEccCCCCCccCch---------hhhcCCCCccEEE
Q psy3330         119 KGLKELKTLDLSYNKISVINK-TAFRDTLHLELLILSFNNITYFEDS---------EIFSSLKSLRILK  177 (608)
Q Consensus       119 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~l~~L~~L~  177 (608)
                      ..+++|++|++++|+++.+.. ..+..+++|+.|++++|++......         ..+..+++|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            889999999999999998854 5789999999999999987654311         1256678888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=6.7e-09  Score=90.32  Aligned_cols=85  Identities=28%  Similarity=0.218  Sum_probs=49.7

Q ss_pred             cccccccccEEEccCCCCCCCCh--hhhcCCCcCcEeeccCCcCCccChhhhCCCCCCcEEEccCCCCCccCc------h
Q psy3330          93 NFEYQNKLLNLNISYNEISALSK--DTFKGLKELKTLDLSYNKISVINKTAFRDTLHLELLILSFNNITYFED------S  164 (608)
Q Consensus        93 ~f~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~  164 (608)
                      .+..+++|++|+|++|+|+.+.+  ..+..+++|+.|+|++|.|+.+.+..+-...+|+.|++++|++.....      .
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            34456667777777777666542  345566677777777777766655444344556667777776654320      1


Q ss_pred             hhhcCCCCccEEE
Q psy3330         165 EIFSSLKSLRILK  177 (608)
Q Consensus       165 ~~~~~l~~L~~L~  177 (608)
                      ..+..+++|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            2345566666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.2e-08  Score=88.60  Aligned_cols=87  Identities=24%  Similarity=0.079  Sum_probs=71.3

Q ss_pred             cccccccCCCccEEEeeCCCCcccCc--ccccccccccEEEccCCCCCCCChhhhcCCCcCcEeeccCCcCCccCh----
Q psy3330          66 VHYTLSFYIELRSLDLSVNKINVLGS--HNFEYQNKLLNLNISYNEISALSKDTFKGLKELKTLDLSYNKISVINK----  139 (608)
Q Consensus        66 l~~~~~~~~~L~~L~Ls~n~l~~i~~--~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----  139 (608)
                      ++.....+++|++|+|++|+|+.+++  ..+..+++|+.|+|++|.|+.++.-.+.+...|+.|++++|.+.....    
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            33345679999999999999998864  457789999999999999999887666666789999999999976533    


Q ss_pred             ---hhhCCCCCCcEEE
Q psy3330         140 ---TAFRDTLHLELLI  152 (608)
Q Consensus       140 ---~~~~~l~~L~~L~  152 (608)
                         ..+..+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               3467889999887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=3.4e-05  Score=66.47  Aligned_cols=62  Identities=10%  Similarity=-0.032  Sum_probs=28.6

Q ss_pred             CCCcCcEeeccCCcCCccC----hhhhCCCCCCcEEEccCCCCCccCc------hhhhcCCCCccEEEccCC
Q psy3330         120 GLKELKTLDLSYNKISVIN----KTAFRDTLHLELLILSFNNITYFED------SEIFSSLKSLRILKLDNN  181 (608)
Q Consensus       120 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~l~~L~~L~L~~n  181 (608)
                      ..+.|++|+|++|.++...    ..++...+.|++|++++|.+..+..      ...+...+.|+.|+++.+
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            3344555555555544321    1233444555666665554443320      122334456666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.48  E-value=8.6e-05  Score=63.83  Aligned_cols=106  Identities=14%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             ccccEEEeccC-CCcc-----cccccccCCCccEEEeeCCCCcccCc----ccccccccccEEEccCCCCCCCC----hh
Q psy3330          51 PEVQTIILREN-RISN-----VHYTLSFYIELRSLDLSVNKINVLGS----HNFEYQNKLLNLNISYNEISALS----KD  116 (608)
Q Consensus        51 ~~l~~L~L~~n-~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~i~~----~~f~~l~~L~~L~Ls~n~i~~~~----~~  116 (608)
                      +++++|+|+++ .++.     +-..+...+.|++|+|++|.+..-..    ..+...+.|++|+|++|.|+.-.    ..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            45666666653 3432     11244555666666666666553221    12334456666666666655321    12


Q ss_pred             hhcCCCcCcEeeccCCcCCccCh-------hhhCCCCCCcEEEccCC
Q psy3330         117 TFKGLKELKTLDLSYNKISVINK-------TAFRDTLHLELLILSFN  156 (608)
Q Consensus       117 ~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~L~~n  156 (608)
                      ++...++|++|++++|.+..+..       ..+...+.|+.|+++.+
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            34444556666666665443321       22333456666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.72  E-value=0.00043  Score=59.17  Aligned_cols=86  Identities=14%  Similarity=0.055  Sum_probs=37.9

Q ss_pred             ccccccEEEccCCCCCCCCh----hhhcCCCcCcEeeccCCcCCccC----hhhhCCCCCCcEEEcc--CCCCCccC---
Q psy3330          96 YQNKLLNLNISYNEISALSK----DTFKGLKELKTLDLSYNKISVIN----KTAFRDTLHLELLILS--FNNITYFE---  162 (608)
Q Consensus        96 ~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~--~n~l~~~~---  162 (608)
                      ..++|++|+|++|.++.-..    ..+...+.++.+++++|.++.-.    ...+...++|+.++|.  +|.+....   
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            44455555555554442211    22333455555555555544221    1233444555554443  33443211   


Q ss_pred             chhhhcCCCCccEEEccCC
Q psy3330         163 DSEIFSSLKSLRILKLDNN  181 (608)
Q Consensus       163 ~~~~~~~l~~L~~L~L~~n  181 (608)
                      ....+...++|+.|+++.+
T Consensus       124 La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCCCcCEEeCcCC
Confidence            0223445566666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.44  E-value=0.0008  Score=57.40  Aligned_cols=106  Identities=15%  Similarity=0.157  Sum_probs=53.9

Q ss_pred             ccccEEEecc-CCCcc-----cccccccCCCccEEEeeCCCCcccCc----ccccccccccEEEccCCCCCCCCh----h
Q psy3330          51 PEVQTIILRE-NRISN-----VHYTLSFYIELRSLDLSVNKINVLGS----HNFEYQNKLLNLNISYNEISALSK----D  116 (608)
Q Consensus        51 ~~l~~L~L~~-n~i~~-----l~~~~~~~~~L~~L~Ls~n~l~~i~~----~~f~~l~~L~~L~Ls~n~i~~~~~----~  116 (608)
                      +.+++|+|++ +.++.     +-.++...++|++|++++|.++....    ..+...+.++.+++++|.+..-..    .
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4566666665 34542     12244556666666666666653211    233445666666666666553211    2


Q ss_pred             hhcCCCcCcEeec--cCCcCCccC----hhhhCCCCCCcEEEccCC
Q psy3330         117 TFKGLKELKTLDL--SYNKISVIN----KTAFRDTLHLELLILSFN  156 (608)
Q Consensus       117 ~~~~l~~L~~L~L--s~n~l~~~~----~~~~~~l~~L~~L~L~~n  156 (608)
                      ++...++|+.++|  ++|.+....    ...+...++|+.|++..+
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            3444556665433  344554311    223345566666666554