Psyllid ID: psy3383

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGPARVH
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccHHHccccHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MEIFRqvaerpvpehtltldederadtpwwkckKWALHILSRIFErygspggvvsdYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLfpflsytdadeelwssdpheyirvkfgelgparvh
Flexible Loop (DISEMBL)
meifrqvaerpvpehtltldederadtpwwkCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFgelgparvh
Low Complexity Region (SEG)
MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGPARVH
Disordered region (IsUnstruct)
************************ADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFG********
Disordered Region (DISOPRED)
*EIFRQVAERPVPEHTL**DEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGPAR**
Disordered Region (DISEMBL)
*********RPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGPARVH
Disordered Region (DISPRO)
MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGPARVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
O95373	1038	Importin-7 OS=Homo sapien	yes	N/A	0.944	0.146	0.578	5e-53
Q9EPL8	1038	Importin-7 OS=Mus musculu	yes	N/A	0.944	0.146	0.578	6e-53
Q7TMY7	1010	Importin-8 OS=Mus musculu	no	N/A	0.944	0.150	0.565	2e-50
O15397	1037	Importin-8 OS=Homo sapien	no	N/A	0.944	0.146	0.559	4e-50
P46970	1048	Nonsense-mediated mRNA de	yes	N/A	0.900	0.138	0.337	5e-20
O59809	1029	Probable importin c550.11	yes	N/A	0.919	0.143	0.346	7e-17
Q55CX9	1065	Probable importin-7 homol	yes	N/A	0.906	0.137	0.282	5e-15
Q04175	944	Importin beta SMX1 OS=Sac	no	N/A	0.894	0.152	0.231	7e-06

>sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1

 Score =  206 bits (524), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           +EI + V  R VP  TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct: 229 IEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
           A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct: 289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348

Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
           IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct: 349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380

Functions in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously, is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with KPNB1 mediates the nuclear import of H1 histone and the Ran-binding site of IPO7 is not required but synergizes with that of KPNB1 in importin/substrate complex dissociation. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In vitro, mediates the nuclear import of HIV-1 reverse transcription complex (RTC) integrase. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.
Homo sapiens (taxid: 9606)

>sp|Q9EPL8|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2

 Score =  206 bits (523), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           +EI + V  R VP  TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct: 229 VEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
           A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct: 289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348

Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
           IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct: 349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380

Functions in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with KPNB1 mediates the nuclear import of H1 histone and the Ran-binding site of IPO7 is not required but synergizes with that of KPNB1 in importin/substrate complex dissociation (By similarity). In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones.

Mus musculus (taxid: 10090)

>sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3

 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 110/152 (72%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           MEIFR + +R VP  TL +DED+R +  WWKCKKWALHI++R+FERYGSPG V  +Y EF
Sbjct: 230 MEIFRTIIDRTVPPETLQIDEDDRPELVWWKCKKWALHIVARLFERYGSPGNVTKEYFEF 289

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
           + ++LKT++ GI  VLL  L QYR   YI+PRV+QQA NYL Q V H   W ++KPH   
Sbjct: 290 SEFFLKTYAVGIQQVLLKILDQYRQKEYIAPRVLQQAFNYLNQGVVHAVTWKQMKPHIQN 349

Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
           I ++V+F  + Y D DEELW  DP+EYIR+KF
Sbjct: 350 ISEDVIFSVMCYKDEDEELWQEDPYEYIRMKF 381

Seems to function in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously, is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro mediates the nuclear import of SRP19.

Mus musculus (taxid: 10090)

>sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2

 Score =  196 bits (499), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 110/152 (72%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           MEIFR + +R VP  TL +DED+R +  WWKCKKWALHI++R+FERYGSPG V  +Y EF
Sbjct: 230 MEIFRTIIDRTVPPETLHIDEDDRPELVWWKCKKWALHIVARLFERYGSPGNVTKEYFEF 289

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
           + ++LKT++ GI  VLL  L QYR   Y++PRV+QQA NYL Q V H   W ++KPH   
Sbjct: 290 SEFFLKTYAVGIQQVLLKILDQYRQKEYVAPRVLQQAFNYLNQGVVHSITWKQMKPHIQN 349

Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
           I ++V+F  + Y D DEELW  DP+EYIR+KF
Sbjct: 350 ISEDVIFSVMCYKDEDEELWQEDPYEYIRMKF 381

Seems to function in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter-like protein in association with the importin-beta subunit KPNB1. Acting autonomously, is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro mediates the nuclear import of SRP19.

Homo sapiens (taxid: 9606)

>sp|P46970|NMD5_YEAST Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD5 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 3/148 (2%)

Query: 4   FRQVAERPVPEHTLTLDEDE-RADTPWWKCKKWALHILSRIFERYGSPGGVVS-DYEEFA 61
           F  + ++P+P+  L + + E R+  PW KCKKWAL  L R+F+RY S        Y+EF 
Sbjct: 244 FVSIIQQPLPQEVLAISDIEVRSKNPWVKCKKWALANLYRLFQRYASTSLTRKFQYDEFK 303

Query: 62  RWYLKTFSAGILDVLLATLAQYRAGH-YISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
           + Y + F    L V+   + ++  G  ++S   +   LN++ Q V     W  + PH   
Sbjct: 304 QMYCEEFLTQFLQVVFDQIEKWGTGQLWLSDECLYYILNFVEQCVVQKTTWKLVGPHYNV 363

Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYI 148
           I+Q V+FP L  T    E + +DP EYI
Sbjct: 364 ILQHVIFPLLKPTAETLEAFDNDPQEYI 391

Active in protein import into the nucleus. Its major import substrate is transcription elongation factor TFIIS.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59809|IMA3_SCHPO Probable importin c550.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.11 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 5/153 (3%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSD---- 56
           +++   V ++P+PE  ++L+ + R    W KCKKWA + L+RIF RYG P  +V D    
Sbjct: 225 IQLLLAVVQKPLPESLMSLEPEVRQSHVWHKCKKWAYYSLNRIFTRYGEPSSLVGDSANK 284

Query: 57  YEEFARWYLKTFSAGILDVLLATLAQYRAGH-YISPRVMQQALNYLTQAVGHGHCWARLK 115
           Y  FA+ ++      IL+  +     +  G  ++SPRV+     +  + V     WA LK
Sbjct: 285 YRAFAKNFITNVVPNILETYIQQTILWTQGQLWLSPRVLYFLGCFYEECVKPKSTWALLK 344

Query: 116 PHATAIIQEVLFPFLSYTDADEELWSSDPHEYI 148
           PH   +I   +FP L  ++ DEELW  DP E+I
Sbjct: 345 PHLQLLIGSFVFPQLCMSEEDEELWELDPVEFI 377

Active in protein import into the nucleus.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 83/156 (53%), Gaps = 10/156 (6%)

Query: 4   FRQVAERPV-PEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVV--SDYEEF 60
           F ++ +RP+ P+  +   +D R +  WW  K+    +L+ +F +  +       S  +  
Sbjct: 231 FVRIIQRPITPQENVKHADDCRKNQ-WWLLKRTTAKLLNLLFRKSATSVRSTDHSSVKAL 289

Query: 61  ARWYLKTFSAGILDVL---LATLAQ-YRAGHYISPRVMQQALNYLTQAVGHGHCWARLKP 116
            + ++  +S  ++ V    L+TL Q Y+  HY   R  Q+ + Y + A+ +G  +  +KP
Sbjct: 290 NKLFMPVYSVEVMKVFYEQLSTLEQLYKGVHY--ERYQQKLIEYFSFAIKYGVTYVAMKP 347

Query: 117 HATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             + +IQ+VLFP + + D D ELW  DP+E++R +F
Sbjct: 348 WLSTLIQQVLFPIICFNDRDAELWECDPNEFLRSQF 383

May function in nuclear protein import.

Dictyostelium discoideum (taxid: 44689)

>sp|Q04175|SXM1_YEAST Importin beta SMX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SXM1 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 3/147 (2%)

Query: 7   VAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLK 66
           +  +P+P   + LD  +R+     K  KW    L+R  +RY      ++  +EF  +   
Sbjct: 230 LCSKPLPVEVMELDPADRSLDKRVKVNKWGFGNLNRFLQRYNKITKAIT--KEFIDYIFN 287

Query: 67  TFSAGILDVLLATLAQY-RAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEV 125
           T    IL      +  +     ++S   +   +++L + V     +  ++PH   I + V
Sbjct: 288 TIVPIILREFFKDIEAWGNNSLWLSDSSLYFLISFLEKCVTIDQLYPLIEPHLQIIFENV 347

Query: 126 LFPFLSYTDADEELWSSDPHEYIRVKF 152
           +FP L   +   EL   D  EY R  F
Sbjct: 348 IFPCLCANEQSIELLEDDQEEYTRRYF 374

Nuclear transport factor (karyopherin) involved in protein transport between the cytoplasm and nucleoplasm. Required for the nuclear import of ribosomal proteins (RPL11, RPL16, RPL25, RPL31A), the poly(A)-binding protein PAB1, the HO endonuclease or the tRNA and snRNA chaperone LHP1. Indirectly involved in nuclear mRNA export through its PAB1 nuclear import activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
260826444	1346	hypothetical protein BRAFLDRAFT_125867 [	0.944	0.112	0.618	2e-58
357622657	967	importin-7 [Danaus plexippus]	0.944	0.157	0.631	3e-58
91078256	1044	PREDICTED: similar to importin-7 [Tribol	0.944	0.145	0.684	8e-58
307214125	1062	Importin-7 [Harpegnathos saltator]	0.944	0.143	0.649	2e-56
380026689	1057	PREDICTED: importin-7 [Apis florea]	0.944	0.143	0.642	3e-56
110767987	1028	PREDICTED: importin-7-like, partial [Api	0.944	0.147	0.642	3e-56
307186404	1062	Importin-7 [Camponotus floridanus]	0.944	0.143	0.642	4e-56
332021582	1059	Importin-7 [Acromyrmex echinatior]	0.944	0.143	0.642	6e-56
340708547	1057	PREDICTED: importin-7-like [Bombus terre	0.944	0.143	0.636	4e-55
345496691	603	PREDICTED: importin-7-like, partial [Nas	0.944	0.252	0.642	5e-55

>gi|260826444|ref|XP_002608175.1| hypothetical protein BRAFLDRAFT_125867 [Branchiostoma floridae] gi|229293526|gb|EEN64185.1| hypothetical protein BRAFLDRAFT_125867 [Branchiostoma floridae]

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/152 (61%), Positives = 115/152 (75%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           ME  +Q+ ERP+PE TL +DEDER D PWWKCKKWA+HIL+R+FERYGSPG V  +Y  F
Sbjct: 229 MEALKQIMERPIPEQTLQIDEDERPDLPWWKCKKWAMHILARVFERYGSPGNVTKEYNSF 288

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
           A WY+KTFSAGIL+VLL  L  YR   Y++PRV+QQ LNYL   V H  CW  LKPH   
Sbjct: 289 AEWYIKTFSAGILNVLLKVLDGYRRKQYVTPRVLQQTLNYLNTGVSHAICWKVLKPHMVD 348

Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
           +I+EV+FP + YTD D+ LW+ DP+EYIR+KF
Sbjct: 349 VIREVVFPLMCYTDEDDLLWNEDPYEYIRMKF 380

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357622657|gb|EHJ74083.1| importin-7 [Danaus plexippus]

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 96/152 (63%), Positives = 118/152 (77%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           ME+ R V E+PVPEHTL +DEDER + PWWKCKKWA+H L R+FERYGSP  V  +Y +F
Sbjct: 151 MEVLRSVMEQPVPEHTLQVDEDERMELPWWKCKKWAVHTLYRLFERYGSPVNVRDEYVQF 210

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
           A WYL TF+ GIL+VLL  L QYR   Y+SPRV+QQ ++Y+ Q + H H W  LKPH  A
Sbjct: 211 AEWYLTTFTGGILEVLLRVLDQYRNKIYVSPRVLQQTISYIDQCISHAHSWKLLKPHMFA 270

Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
           II++VLFP +SY++ADEELW SDPHEYIR+KF
Sbjct: 271 IIKDVLFPLMSYSEADEELWFSDPHEYIRIKF 302

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078256|ref|XP_970842.1| PREDICTED: similar to importin-7 [Tribolium castaneum] gi|270003922|gb|EFA00370.1| hypothetical protein TcasGA2_TC003212 [Tribolium castaneum]

 Score =  228 bits (580), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 118/152 (77%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           ME+ RQV ERPVP   L  DEDER D PWWKCKKWALHIL R+FERYGSPG V  +Y EF
Sbjct: 229 MEVCRQVVERPVPPAALQPDEDERPDLPWWKCKKWALHILYRMFERYGSPGLVTKEYNEF 288

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
           A WYL+TFSAGIL+VLL  L  YR+GH++ PRV+QQ LNYL QAV H + W  LKPH  A
Sbjct: 289 AEWYLQTFSAGILEVLLRQLDGYRSGHWVPPRVLQQTLNYLNQAVSHAYTWRILKPHMPA 348

Query: 121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
           IIQ+VLFP +SY+  D ELW+ DPHEYIRVKF
Sbjct: 349 IIQDVLFPLMSYSPEDHELWTVDPHEYIRVKF 380

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214125|gb|EFN89289.1| Importin-7 [Harpegnathos saltator]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 123/154 (79%), Gaps = 2/154 (1%)

Query: 1   MEIFRQVAERPVPEHTLT--LDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYE 58
           M++ RQVA+RPVP  T    LDEDERA+ PWWKCKKWALHIL R+FERYGSPG V  +Y+
Sbjct: 231 MDVVRQVADRPVPPETNNPDLDEDERAELPWWKCKKWALHILHRMFERYGSPGSVTKEYK 290

Query: 59  EFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHA 118
           EF+ WYL+TFSAGIL+VLL  L QYR   Y+SPRV+QQ++NY+ Q V H + W  LKPH 
Sbjct: 291 EFSEWYLQTFSAGILEVLLKILDQYRRKIYVSPRVVQQSINYINQGVSHAYSWKFLKPHM 350

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             II++V+FP LSY+ ADEELW++DP+EYIRVKF
Sbjct: 351 FEIIRDVIFPILSYSAADEELWNNDPYEYIRVKF 384

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026689|ref|XP_003697077.1| PREDICTED: importin-7 [Apis florea]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 99/154 (64%), Positives = 123/154 (79%), Gaps = 2/154 (1%)

Query: 1   MEIFRQVAERPVPEHTLT--LDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYE 58
           M++ RQVA+RPVP  T    LD+DERA+ PWWKCKKWALHIL R+FERYGSPG V  +Y+
Sbjct: 227 MDVVRQVADRPVPPETNNPDLDDDERAELPWWKCKKWALHILRRMFERYGSPGNVTQEYK 286

Query: 59  EFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHA 118
           EF+RWYL+TFS GIL+VLL  L QYR   Y+SPRV+QQ++NY+ Q V H + W  LKPH 
Sbjct: 287 EFSRWYLRTFSGGILEVLLKILDQYRRKIYVSPRVIQQSINYINQGVSHAYSWKFLKPHM 346

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             II++VLFP LSY+ ADEELW+++P+EYIRVKF
Sbjct: 347 FEIIRDVLFPILSYSAADEELWNNNPYEYIRVKF 380

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110767987|ref|XP_624116.2| PREDICTED: importin-7-like, partial [Apis mellifera]

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 99/154 (64%), Positives = 123/154 (79%), Gaps = 2/154 (1%)

Query: 1   MEIFRQVAERPVPEHTLT--LDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYE 58
           M++ RQVA+RPVP  T    LD+DERA+ PWWKCKKWALHIL R+FERYGSPG V  +Y+
Sbjct: 199 MDVVRQVADRPVPPETNNPDLDDDERAELPWWKCKKWALHILRRMFERYGSPGNVTQEYK 258

Query: 59  EFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHA 118
           EF+RWYL+TFS GIL+VLL  L QYR   Y+SPRV+QQ++NY+ Q V H + W  LKPH 
Sbjct: 259 EFSRWYLRTFSGGILEVLLKILDQYRRKIYVSPRVIQQSINYINQGVSHAYSWKFLKPHM 318

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             II++VLFP LSY+ ADEELW+++P+EYIRVKF
Sbjct: 319 FEIIRDVLFPILSYSAADEELWNNNPYEYIRVKF 352

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186404|gb|EFN72038.1| Importin-7 [Camponotus floridanus]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 99/154 (64%), Positives = 123/154 (79%), Gaps = 2/154 (1%)

Query: 1   MEIFRQVAERPVPE--HTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYE 58
           M++ RQ+A+RPVP   ++  LD+DERA+ PWWKCKKWALHIL R+FERYGSPG V  +Y+
Sbjct: 232 MDVVRQIADRPVPPEINSADLDDDERAELPWWKCKKWALHILHRMFERYGSPGNVTKEYQ 291

Query: 59  EFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHA 118
           EFA WYL+TFSAGIL+VLL  L QYR   Y+SPRV+QQ++NY+ Q V H   W  LKPH 
Sbjct: 292 EFAEWYLQTFSAGILEVLLKILDQYRRKIYVSPRVVQQSINYINQGVSHAFSWKFLKPHM 351

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             II++VLFP LSY+ ADEELW++DP+EYIRVKF
Sbjct: 352 FEIIRDVLFPILSYSAADEELWNTDPYEYIRVKF 385

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021582|gb|EGI61947.1| Importin-7 [Acromyrmex echinatior]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 99/154 (64%), Positives = 121/154 (78%), Gaps = 2/154 (1%)

Query: 1   MEIFRQVAERPVPEHTLT--LDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYE 58
           M++ RQ+A+RPVP  T    LD+DER + PWWKCKKWALHIL R+FERYGSPG V  +Y+
Sbjct: 229 MDVIRQIADRPVPPETNNPDLDDDERVELPWWKCKKWALHILHRVFERYGSPGNVTKEYK 288

Query: 59  EFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHA 118
           EF+ WYL+TFSAGIL+VLL  L QYR   YISPRV+QQ++NY+ Q V H   W  LKPH 
Sbjct: 289 EFSEWYLQTFSAGILEVLLKILDQYRRKIYISPRVIQQSINYINQGVSHAFSWKFLKPHM 348

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             II++VLFP LSY+ ADEELW++DP+EYIRVKF
Sbjct: 349 FEIIRDVLFPILSYSAADEELWNTDPYEYIRVKF 382

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708547|ref|XP_003392885.1| PREDICTED: importin-7-like [Bombus terrestris]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 122/154 (79%), Gaps = 2/154 (1%)

Query: 1   MEIFRQVAERPVPEHTLT--LDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYE 58
           M++ RQVA+RPVP  T    LD+DERA+ PWWKCKKWALHIL R+FERYGSPG V  +Y+
Sbjct: 227 MDVVRQVADRPVPPETNNPDLDDDERAELPWWKCKKWALHILRRMFERYGSPGNVTHEYK 286

Query: 59  EFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHA 118
           EF+ WYL+TFS GIL+VLL  L QYR   Y+SPRV+QQ++NY+ Q V H + W  LKPH 
Sbjct: 287 EFSGWYLRTFSGGILEVLLKILDQYRRKIYVSPRVIQQSINYINQGVSHAYSWKFLKPHM 346

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             II++VLFP LSY+ ADEELW+++P+EYIRVKF
Sbjct: 347 FEIIRDVLFPILSYSAADEELWNNNPYEYIRVKF 380

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496691|ref|XP_001602555.2| PREDICTED: importin-7-like, partial [Nasonia vitripennis]

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 118/154 (76%), Gaps = 2/154 (1%)

Query: 1   MEIFRQVAERPVPEHTLT--LDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYE 58
           M++ RQVA+RPVP  T    LDEDERA+ PWWKCKKWALHIL R+FERYGSPG V  DY+
Sbjct: 228 MDVIRQVADRPVPPETNNPDLDEDERAELPWWKCKKWALHILQRMFERYGSPGSVTKDYK 287

Query: 59  EFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHA 118
           EF+ WYL+TFS GIL+VLL  L QYR   Y+SPRV+QQ+LNY+ Q V H   W  LKPH 
Sbjct: 288 EFSEWYLQTFSGGILEVLLKILDQYRRKIYVSPRVLQQSLNYIDQGVSHAFSWKFLKPHM 347

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             I+ +VLFP +SYT  DEEL+ +DP+EYIRVKF
Sbjct: 348 FEIVCDVLFPIMSYTAEDEELYLTDPYEYIRVKF 381

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
UNIPROTKB|F1NBA8	1009	IPO7 "Uncharacterized protein"	0.944	0.150	0.585	1.4e-48
UNIPROTKB|I3LDM3	1010	IPO7 "Uncharacterized protein"	0.944	0.150	0.578	5e-48
UNIPROTKB|E1BGE5	1038	IPO7 "Uncharacterized protein"	0.944	0.146	0.578	5.4e-48
UNIPROTKB|E2R2C4	1038	IPO7 "Uncharacterized protein"	0.944	0.146	0.578	5.4e-48
UNIPROTKB|F6X4J2	1038	IPO7 "Uncharacterized protein"	0.944	0.146	0.578	5.4e-48
UNIPROTKB|O95373	1038	IPO7 "Importin-7" [Homo sapien	0.944	0.146	0.578	5.4e-48
MGI|MGI:2152414	1038	Ipo7 "importin 7" [Mus musculu	0.944	0.146	0.578	5.4e-48
RGD|1310849	1038	Ipo7 "importin 7" [Rattus norv	0.944	0.146	0.578	5.4e-48
FB|FBgn0026252	1049	msk "moleskin" [Drosophila mel	0.937	0.143	0.601	9.2e-48
UNIPROTKB|O42480	1038	ipo7 "RanBP7" [Xenopus laevis	0.944	0.146	0.572	1.1e-47

UNIPROTKB|F1NBA8 IPO7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 516 (186.7 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 89/152 (58%), Positives = 111/152 (73%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
             +EI + V +R VP  TL +DED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct:   200 IEILKTVVDRDVPAETLQVDEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 259

Query:    61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
             A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct:   260 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHAVTWKNLKPHIQG 319

Query:   121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct:   320 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 351

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

UNIPROTKB|I3LDM3 IPO7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 511 (184.9 bits), Expect = 5.0e-48, P = 5.0e-48
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
             +EI + V  R VP  TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct:   201 IEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 260

Query:    61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
             A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct:   261 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 320

Query:   121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct:   321 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 352

GO:0042393 "histone binding" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|E1BGE5 IPO7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 511 (184.9 bits), Expect = 5.4e-48, P = 5.4e-48
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
             +EI + V  R VP  TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct:   229 IEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288

Query:    61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
             A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct:   289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348

Query:   121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct:   349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380

GO:0042393 "histone binding" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|E2R2C4 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 511 (184.9 bits), Expect = 5.4e-48, P = 5.4e-48
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
             +EI + V  R VP  TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct:   229 IEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288

Query:    61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
             A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct:   289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348

Query:   121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct:   349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|F6X4J2 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 511 (184.9 bits), Expect = 5.4e-48, P = 5.4e-48
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
             +EI + V  R VP  TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct:   229 IEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288

Query:    61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
             A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct:   289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348

Query:   121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct:   349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|O95373 IPO7 "Importin-7" [Homo sapiens (taxid:9606)]

 Score = 511 (184.9 bits), Expect = 5.4e-48, P = 5.4e-48
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
             +EI + V  R VP  TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct:   229 IEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288

Query:    61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
             A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct:   289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348

Query:   121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct:   349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005215 "transporter activity" evidence=TAS

GO:0008536 "Ran GTPase binding" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

MGI|MGI:2152414 Ipo7 "importin 7" [Mus musculus (taxid:10090)]

 Score = 511 (184.9 bits), Expect = 5.4e-48, P = 5.4e-48
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
             +EI + V  R VP  TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct:   229 VEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288

Query:    61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
             A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct:   289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348

Query:   121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct:   349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0042393 "histone binding" evidence=IDA

RGD|1310849 Ipo7 "importin 7" [Rattus norvegicus (taxid:10116)]

 Score = 511 (184.9 bits), Expect = 5.4e-48, P = 5.4e-48
 Identities = 88/152 (57%), Positives = 110/152 (72%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
             +EI + V  R VP  TL ++ED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y EF
Sbjct:   229 VEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEF 288

Query:    61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
             A  +LK F+ G+  VLL  L QY+   Y++PRV+QQ LNY+ Q V H   W  LKPH   
Sbjct:   289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQG 348

Query:   121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             IIQ+V+FP + YTDADEELW  DP+EYIR+KF
Sbjct:   349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKF 380

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006606 "protein import into nucleus" evidence=IEA;ISO

GO:0008565 "protein transporter activity" evidence=IEA

GO:0042393 "histone binding" evidence=IEA;ISO

FB|FBgn0026252 msk "moleskin" [Drosophila melanogaster (taxid:7227)]

 Score = 509 (184.2 bits), Expect = 9.2e-48, P = 9.2e-48
 Identities = 92/153 (60%), Positives = 118/153 (77%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSD-YEE 59
             MEI RQVA+R VP+ +  LD+DER + P+WK KKWALHI+ R+FERYGSP  VVS+ Y++
Sbjct:   231 MEICRQVADRAVPDSS-HLDDDERTEFPYWKTKKWALHIMVRMFERYGSPSNVVSEKYQK 289

Query:    60 FARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHAT 119
             FA WYL TFS G+L+VLL  L QYR   Y+SPRV+   LNYL  AV H + W  +KPH  
Sbjct:   290 FAEWYLPTFSQGVLEVLLKILDQYRNRVYVSPRVLTDVLNYLKNAVSHAYTWKLIKPHMV 349

Query:   120 AIIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             A+IQ+V+FP +S+TD+D+ELW SDP+EYIR+KF
Sbjct:   350 AVIQDVIFPIMSFTDSDQELWESDPYEYIRLKF 382

GO:0006606 "protein import into nucleus" evidence=ISS;IDA;TAS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0005643 "nuclear pore" evidence=IEA;ISS

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IPI

GO:0005938 "cell cortex" evidence=IDA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0035311 "wing cell fate specification" evidence=IMP

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0000189 "MAPK import into nucleus" evidence=IMP

GO:0016318 "ommatidial rotation" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0042052 "rhabdomere development" evidence=IMP

GO:0048749 "compound eye development" evidence=IGI;IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0045465 "R8 cell differentiation" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|O42480 ipo7 "RanBP7" [Xenopus laevis (taxid:8355)]

 Score = 508 (183.9 bits), Expect = 1.1e-47, P = 1.1e-47
 Identities = 87/152 (57%), Positives = 110/152 (72%)

Query:     1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
             +EI + V +R VP  TL +DED+R + PWWKCKKWALHIL+R+FERYGSPG V  +Y +F
Sbjct:   229 IEILKTVVDRDVPAETLQVDEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNDF 288

Query:    61 ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATA 120
             A  +LK F+ G+  VLL  L QY+   YI+PRV+QQ LNY  Q V H   W  LKPH   
Sbjct:   289 AEVFLKAFAVGVQQVLLKVLYQYKEKQYIAPRVLQQTLNYFNQGVSHAVTWKNLKPHIQG 348

Query:   121 IIQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
             IIQ+V+FP + YTD+DE+LW  DP+EYIR+KF
Sbjct:   349 IIQDVIFPLMCYTDSDEDLWQEDPYEYIRMKF 380

GO:0005515 "protein binding" evidence=IPI

GO:0006610 "ribosomal protein import into nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EPL8	IPO7_MOUSE	No assigned EC number	0.5789	0.9440	0.1464	yes	N/A
O95373	IPO7_HUMAN	No assigned EC number	0.5789	0.9440	0.1464	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	161
COG5656	970	COG5656, SXM1, Importin, protein involved in nucle	1e-26
pfam08506	370	pfam08506, Cse1, Cse1	2e-04

>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

 Score =  104 bits (260), Expect = 1e-26
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 3   IFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFAR 62
           +  ++ ++P+P   L+LD + R+ + W KCKKWA + L R F+RY       S Y  F  
Sbjct: 229 LSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKS-YLSFYI 287

Query: 63  WYLKTFSAGILDVLLATLAQYRAGH-YISPRVMQQALNYLTQAVGHGHCWARLKPHATAI 121
            ++ T    IL      + ++  G  ++S   +     ++   V     W  ++PH   I
Sbjct: 288 TFM-TRVPMILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYI 346

Query: 122 IQEVLFPFLSYTDADEELWSSDPHEYIRVKF 152
           I  V+FP L  ++ +EEL+ +DP EYIR  +
Sbjct: 347 ISGVIFPLLCLSEEEEELFENDPDEYIRRYY 377

Length = 970

>gnl|CDD|219873 pfam08506, Cse1, Cse1

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 40/161 (24%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFER---YGSPGGVVSDY 57
           M IF +      P   L  D+DE A             + + I E    Y         Y
Sbjct: 84  MGIFHKYLTYDNP--LLETDDDEEAGVL--------EKLKASICENLQLY------TQRY 127

Query: 58  EEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPH 117
           EE    YL  F   + ++L++T  Q +    +S     +AL++LT +V      AR   +
Sbjct: 128 EEEFGPYLNEFVTAVWNLLVSTSPQPKYDILVS-----KALSFLT-SV------ARRPHY 175

Query: 118 A---------TAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
           A           I ++V+ P ++  ++DEEL+  DP EYIR
Sbjct: 176 AELFNNESVLKQICEKVVLPNVTLRESDEELFEDDPIEYIR 216

This domain is present in Cse1 nuclear export receptor proteins. Cse1 mediates the nuclear export of importin alpha. This domain contains HEAT repeats. Length = 370

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG1991|consensus	1010		100.0
COG5656	970	SXM1 Importin, protein involved in nuclear import	100.0
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	100.0
KOG1992|consensus	960		99.9
COG5657	947	CSE1 CAS/CSE protein involved in chromosome segreg	99.29
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	93.41
KOG2274|consensus	1005		88.17
KOG1993|consensus	978		82.97

>KOG1991|consensus

Probab=100.00  E-value=1.6e-52  Score=379.41  Aligned_cols=158  Identities=53%  Similarity=1.023  Sum_probs=155.7

Q ss_pred             ChHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383           1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL   80 (161)
Q Consensus         1 m~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll   80 (161)
                      |++|++|+++|+|.|+++.|+|+|..+|||||||||+|||||+|+|||+|+++.++|++||++|..+|++.|+++++++|
T Consensus       228 ~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l  307 (1010)
T KOG1991|consen  228 MELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKIL  307 (1010)
T ss_pred             HHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcCCc
Q psy3383          81 AQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGPA  158 (161)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~d~  158 (161)
                      ++|+++.|++||+++++++||++||+++.+|++++||++.|++++|||.||++|+|+|+||+||+||||+++|++||.
T Consensus       308 ~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~  385 (1010)
T KOG1991|consen  308 EQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDG  385 (1010)
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999983

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-40  Score=292.91  Aligned_cols=154  Identities=28%  Similarity=0.538  Sum_probs=147.9

Q ss_pred             hHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHH
Q psy3383           2 EIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLA   81 (161)
Q Consensus         2 ~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~   81 (161)
                      +++++|+++|+|.|++..|++.|..++|.||||||+.++||+|+|||.++. .+.|..|+..|++ +.|.|+++++++++
T Consensus       228 ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~-~~~y~~f~~~f~t-~vp~il~tffkqie  305 (970)
T COG5656         228 QLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSY-KKSYLSFYITFMT-RVPMILATFFKQIE  305 (970)
T ss_pred             HHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999998544 4589999999998 99999999999999


Q ss_pred             HhhcC-cccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcCC
Q psy3383          82 QYRAG-HYISPRVMQQALNYLTQAVGHGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGP  157 (161)
Q Consensus        82 ~~~~~-~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~d  157 (161)
                      .|++| .|++|+++|++..|+..||..+.+|++++||++-|++++|||.+|+|++++|+||+||+|||||++|++++
T Consensus       306 ~wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~  382 (970)
T COG5656         306 EWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDN  382 (970)
T ss_pred             HhhcCCeecchHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcC
Confidence            99985 79999999999999999999999999999999999999999999999999999999999999999999987

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=100.00  E-value=2.7e-34  Score=244.60  Aligned_cols=138  Identities=28%  Similarity=0.471  Sum_probs=111.2

Q ss_pred             ChHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383           1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL   80 (161)
Q Consensus         1 m~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll   80 (161)
                      |+.|+++|++++|...   ++|+.+..++||+|+|+++|++++.+||++         +|     ++|+|.|++.+|++|
T Consensus        84 m~~f~~~L~~~~p~l~---~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e---------~f-----~~~l~~fv~~vw~lL  146 (370)
T PF08506_consen   84 MEIFHKYLTYPNPALE---EDDDDEPGLLEKVKAWICENLNLYAEKYEE---------EF-----EPFLPTFVQAVWNLL  146 (370)
T ss_dssp             HHHHHHHHH--SGGG----TT-SSS--HHHHHHHHHHHHHHHHHHH-HH---------HH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccC---CCCcccccHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHH
Confidence            7899999999998533   333446778999999999999999999976         56     799999999999999


Q ss_pred             HHhhcCcccCHHHHHHHHHHHHHhhcCchhhh-cc--hhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcCC
Q psy3383          81 AQYRAGHYISPRVMQQALNYLTQAVGHGHCWA-RL--KPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGP  157 (161)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~-~l--kp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~d  157 (161)
                      .+++. ....|.+++.+++||+.+++. .+|+ ++  +||+++||++||||+||+|++|+|+|||||+|||||++|++|-
T Consensus       147 ~~~~~-~~~~D~lv~~al~FL~~v~~~-~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~  224 (370)
T PF08506_consen  147 TKISQ-QPKYDILVSKALQFLSSVAES-PHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDS  224 (370)
T ss_dssp             TC--S-SGGGHHHHHHHHHHHHHHHTS-HHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS--
T ss_pred             HHhhh-cccccHHHHHHHHHHHHHHcc-hhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcccccc
Confidence            99876 556799999999999987764 4565 65  7999999999999999999999999999999999999999754

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1992|consensus

Probab=99.90  E-value=2e-23  Score=187.92  Aligned_cols=138  Identities=24%  Similarity=0.314  Sum_probs=123.6

Q ss_pred             ChHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383           1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL   80 (161)
Q Consensus         1 m~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll   80 (161)
                      |+.|++++++++|  .++.  |+.+....-|+|.-+|.|++.|.+||.+         +|     ++|+|.|++++|++|
T Consensus       236 M~~F~k~l~~~~p--~le~--~~ee~~~l~~lka~ICEi~~LY~~kYeE---------ef-----~~fl~~fv~~~W~LL  297 (960)
T KOG1992|consen  236 MGAFHKLLTYDNP--LLES--DEEEATVLDKLKAQICEIFNLYATKYEE---------EF-----QPFLPDFVTATWNLL  297 (960)
T ss_pred             HHHHHHHHhccCc--cccc--CcccccHHHHHHHHHHHHHHHHHHhhHH---------HH-----HhhHHHHHHHHHHHH
Confidence            7899999999999  5554  4457889999999999999999999988         78     899999999999999


Q ss_pred             HHhhcCcccCHHHHHHHHHHHHHhhcCchhhh-cc--hhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcCC
Q psy3383          81 AQYRAGHYISPRVMQQALNYLTQAVGHGHCWA-RL--KPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGP  157 (161)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~-~l--kp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~d  157 (161)
                      ...++ ...+|.++++|++||+.+++ ...|. ++  ...+.+|++.||+||++++++|+|+|||||.|||||+++|+|-
T Consensus       298 ~~~s~-~~kyD~Lvs~Al~FLt~V~~-r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDv  375 (960)
T KOG1992|consen  298 VSTSP-DTKYDYLVSKALQFLTSVSR-RPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDV  375 (960)
T ss_pred             HhcCC-CccHHHHHHHHHHHHHHHHh-hhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCc
Confidence            99876 66799999999999998765 55665 55  6779999999999999999999999999999999999999985


Q ss_pred             c
Q psy3383         158 A  158 (161)
Q Consensus       158 ~  158 (161)
                      .
T Consensus       376 d  376 (960)
T KOG1992|consen  376 D  376 (960)
T ss_pred             c
Confidence            4

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]

Probab=99.29  E-value=7.3e-12  Score=114.78  Aligned_cols=139  Identities=20%  Similarity=0.278  Sum_probs=114.1

Q ss_pred             ChHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383           1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL   80 (161)
Q Consensus         1 m~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll   80 (161)
                      |+.|...+.+-.|  .+..|  .-+.....|+|.-++.+++.|-+||-+         -|     +.+.-.|++.+|.++
T Consensus       230 m~~F~klls~~~~--~lq~~--~le~~~~~~l~~~i~e~f~ly~t~yp~---------~i-----t~li~dfv~~vw~~l  291 (947)
T COG5657         230 MEHFCKLLSYSNP--VLQKD--CLEDCVYFKLKGSICEIFNLYTTKYPE---------VI-----TYLIYDFVEIVWNLL  291 (947)
T ss_pred             HHHHHHHHhhcch--hhhhh--hcccceeeeecccHHHHHHHHhhccHH---------Hh-----hHHHHHHHHHHHHHH
Confidence            6788888888776  43332  223367889999999999999999976         23     557779999999999


Q ss_pred             HHhhcCcccCHHHHHHHHHHHHHhhc--Cchhhhcchh----HHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccC
Q psy3383          81 AQYRAGHYISPRVMQQALNYLTQAVG--HGHCWARLKP----HATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGE  154 (161)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~fL~~~v~--~~~~~~~lkp----~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~  154 (161)
                      ++... .++.|.++..++.++...++  .+.+...+-.    -+.++++.++.|+++++++|+|+|+|||.||||.+...
T Consensus       292 ttit~-~~~~d~Lv~k~l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~  370 (947)
T COG5657         292 TTITR-PYIRDYLVSKSLTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKT  370 (947)
T ss_pred             HhhcC-ccccchhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccc
Confidence            99865 77899999999999999998  7778876644    68999999999999999999999999999999966655


Q ss_pred             cCCc
Q psy3383         155 LGPA  158 (161)
Q Consensus       155 ~~d~  158 (161)
                      .=+.
T Consensus       371 dye~  374 (947)
T COG5657         371 DYEV  374 (947)
T ss_pred             cchh
Confidence            3333

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=93.41  E-value=0.69  Score=35.16  Aligned_cols=73  Identities=21%  Similarity=0.261  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhc-Cch
Q psy3383          31 KCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVG-HGH  109 (161)
Q Consensus        31 K~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~-~~~  109 (161)
                      .+++-|+..+.++|.+=+.       +.++.+-+..+.+|.|++..+++++.        ..+...++..|..++. ++.
T Consensus        83 ~~~~~ai~~L~~l~~~~~~-------~p~l~Rei~tp~l~~~i~~ll~l~~~--------~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen   83 SVLEAAIITLTRLFDLIRG-------KPTLTREIATPNLPKFIQSLLQLLQD--------SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             HHHHHHHHHHHHHHHHhcC-------CCchHHHHhhccHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHCCc
Confidence            6788999999999988554       34777778899999999999999885        3466677888888875 333


Q ss_pred             hhhcchhHHHHH
Q psy3383         110 CWARLKPHATAI  121 (161)
Q Consensus       110 ~~~~lkp~l~~l  121 (161)
                         .++||...|
T Consensus       148 ---t~rp~~~ki  156 (165)
T PF08167_consen  148 ---TFRPFANKI  156 (165)
T ss_pred             ---cccchHHHH
Confidence               445554443

>KOG2274|consensus

Probab=88.17  E-value=1.1  Score=42.77  Aligned_cols=90  Identities=18%  Similarity=0.376  Sum_probs=66.9

Q ss_pred             HHhhhhHHHHHHHHHHHHHhhc--------C--------------cccCHHHHHHHHHHHHHhhcCchhhhcchhHHHHH
Q psy3383          64 YLKTFSAGILDVLLATLAQYRA--------G--------------HYISPRVMQQALNYLTQAVGHGHCWARLKPHATAI  121 (161)
Q Consensus        64 f~~~~~~~~l~~~l~ll~~~~~--------~--------------~~~~~~~~~~~l~fL~~~v~~~~~~~~lkp~l~~l  121 (161)
                      .+..|+..++..+|+++++.-.        +              ...-..++-+++.|++..++....-+.++..+..+
T Consensus       264 ~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~l  343 (1005)
T KOG2274|consen  264 LINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPEL  343 (1005)
T ss_pred             hhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            3456777777888886643210        0              11123566789999999988777777777788888


Q ss_pred             HHHhHhccCcCCcchhccccCChHHHHHHhccC
Q psy3383         122 IQEVLFPFLSYTDADEELWSSDPHEYIRVKFGE  154 (161)
Q Consensus       122 i~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~  154 (161)
                      +...+. .+.++++..|.|.+||.+||-...|+
T Consensus       344 I~~~v~-y~Qlseeqie~w~sD~~~fV~dEd~~  375 (1005)
T KOG2274|consen  344 IYQLVA-YLQLSEEQIEVWTSDVNQFVADEDDG  375 (1005)
T ss_pred             HHHHHH-HHHhhHHHHHHHhccHHHhhccCCCC
Confidence            887776 57899999999999999999988777

>KOG1993|consensus

Probab=82.97  E-value=0.68  Score=43.68  Aligned_cols=39  Identities=18%  Similarity=0.418  Sum_probs=33.4

Q ss_pred             hhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhcc
Q psy3383         115 KPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFG  153 (161)
Q Consensus       115 kp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d  153 (161)
                      .+-+..||...|==.+.++++|.|.|.+||++|+..+--
T Consensus       368 ~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~  406 (978)
T KOG1993|consen  368 DNRITNLCDLLVTHYFLLTEEELEEWTQDPEGWVLEQSG  406 (978)
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHhcChHHhhhhccc
Confidence            455778888888888999999999999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	5e-20

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960

 Score = 85.0 bits (209), Expect = 5e-20
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           M IF +      P   L   ++    +   K K     ++     RY           + 
Sbjct: 233 MGIFHKYLSYSNP--LLEDPDETEHASVLIKVKSSIQELVQLYTTRYE----------DV 280

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWA--RLKPHA 118
               +  F     ++L +   Q +    +S     ++L++LT        +     +   
Sbjct: 281 FGPMINEFIQITWNLLTSISNQPKYDILVS-----KSLSFLTAVTRIPKYFEIFNNESAM 335

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGE 154
             I ++++ P ++  + D EL+  DP EYIR     
Sbjct: 336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.86
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.66
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.46
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.14
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.88
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	95.74
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	93.07
1qgr_A	876	Protein (importin beta subunit); transport recepto	80.97

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.86  E-value=1.5e-21  Score=180.04  Aligned_cols=138  Identities=17%  Similarity=0.279  Sum_probs=117.4

Q ss_pred             hHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHH
Q psy3383           2 EIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLA   81 (161)
Q Consensus         2 ~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~   81 (161)
                      ++|.++++.+.|.  ...|+|+++..+|||+|||+++++++++.||++         .|     .++++.|++.+|+++.
T Consensus       234 ~~~~~~l~~~~p~--~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~---------~f-----~~~~~~~~~~~~~~l~  297 (960)
T 1wa5_C          234 GIFHKYLSYSNPL--LEDPDETEHASVLIKVKSSIQELVQLYTTRYED---------VF-----GPMINEFIQITWNLLT  297 (960)
T ss_dssp             HHHHHHHSCCSCC--CC------CCCHHHHHHHHHHHHHHHHHHHCHH---------HH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCc--ccCCcccccccHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHH
Confidence            5678888887763  334446678899999999999999999999975         55     6889999999999998


Q ss_pred             HhhcCcccCHHHHHHHHHHHHHhhcCchhhhcch--hHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcC
Q psy3383          82 QYRAGHYISPRVMQQALNYLTQAVGHGHCWARLK--PHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELG  156 (161)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~lk--p~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~  156 (161)
                      .+++ .+.+++++..+++|++.+++.+..|+.++  |++..|++.+|+|+|+++++|+|+|++||.||||++.|..+
T Consensus       298 ~~~~-~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d  373 (960)
T 1wa5_C          298 SISN-QPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSD  373 (960)
T ss_dssp             HCCS-CTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC--
T ss_pred             hcCC-CcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCccc
Confidence            7654 67899999999999999999999999997  99999999999999999999999999999999999987543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.66  E-value=7.5e-05  Score=69.47  Aligned_cols=121  Identities=12%  Similarity=0.081  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHH-----------HHHHhCCCCCCCcc-hHHHHHHHHh---hh---------hHHHHHHHHHHHHHhhcC
Q psy3383          31 KCKKWALHILSR-----------IFERYGSPGGVVSD-YEEFARWYLK---TF---------SAGILDVLLATLAQYRAG   86 (161)
Q Consensus        31 K~KKwa~~il~r-----------l~~Ryg~~~~~~~~-~~~fa~~f~~---~~---------~~~~l~~~l~ll~~~~~~   86 (161)
                      ++++|.-.++..           +..+|+.++..+.+ .+.+++.|..   .+         ..+.+..+++.+-.....
T Consensus       276 ~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~  355 (1049)
T 3m1i_C          276 QTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI  355 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcC
Confidence            788887777763           44567654333222 2345544421   11         123344555554443221


Q ss_pred             cccCHHHHHHHHHHHHHhhc----CchhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCc
Q psy3383          87 HYISPRVMQQALNYLTQAVG----HGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGEL  155 (161)
Q Consensus        87 ~~~~~~~~~~~l~fL~~~v~----~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~  155 (161)
                        -.+.+...+++|....++    .+..++.++|++..|+ .++++.|++. +|.+.++|||.||+|+..+..
T Consensus       356 --~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv-~~ll~~m~~~-ed~~~~~dd~~e~~r~~~~d~  424 (1049)
T 3m1i_C          356 --EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLR-LVIIENMVRP-EEVLVVENDEGEIVREFVKES  424 (1049)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHH-HHHHHTCCCC-TTCCEEECTTSCEEECSSCCH
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HHHHHhcCCC-cceeeeeCCCCcchHhhhccc
Confidence              267888899999999887    6677889999999999 5899999984 466666779999988766543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.46  E-value=0.0002  Score=64.73  Aligned_cols=97  Identities=20%  Similarity=0.173  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcCc
Q psy3383          29 WWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHG  108 (161)
Q Consensus        29 ~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~~  108 (161)
                      -..++++|+..+.++...++.              +..++++.+++.+++.+..      ..+.+...+++|+....+.+
T Consensus       228 ~~~vr~~a~~~L~~l~~~~~~--------------~~~~~l~~l~~~l~~~~~~------~~~~vr~~a~e~l~~l~~~~  287 (852)
T 4fdd_A          228 EPEVRKNVCRALVMLLEVRMD--------------RLLPHMHNIVEYMLQRTQD------QDENVALEACEFWLTLAEQP  287 (852)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHH--------------HHGGGHHHHHHHHHHHHTC------SSHHHHHHHHHHHHHHTTST
T ss_pred             CHHHHHHHHHHHHHHHHhCHH--------------HHHHHHHHHHHHHHHHccC------CcHHHHHHHHHHHHHHhcch
Confidence            346889999999999887653              2367778888887776542      25788999999999998887


Q ss_pred             hhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHH
Q psy3383         109 HCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHE  146 (161)
Q Consensus       109 ~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~E  146 (161)
                      ..++.++|++..++. ++++.|+.+++|.++++.||.|
T Consensus       288 ~~~~~~~~~~~~l~p-~ll~~l~~~e~d~~~~~~d~~e  324 (852)
T 4fdd_A          288 ICKDVLVRHLPKLIP-VLVNGMKYSDIDIILLKGDVEG  324 (852)
T ss_dssp             THHHHHTTTHHHHHH-HHHHHTSCCHHHHHHHHC----
T ss_pred             hHHHHHHHHHHHHHH-HHHHHcCCcHhHHHHhcCCccc
Confidence            788889999999995 7799999999999988777654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.14  E-value=0.014  Score=53.33  Aligned_cols=104  Identities=12%  Similarity=0.127  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH------hhhhHHHHHHHHHHHHHhhcCcc-cCHHHHHHHHHHHHHhhc
Q psy3383          34 KWALHILSRIFERYGSPGGVVSDYEEFARWYL------KTFSAGILDVLLATLAQYRAGHY-ISPRVMQQALNYLTQAVG  106 (161)
Q Consensus        34 Kwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~------~~~~~~~l~~~l~ll~~~~~~~~-~~~~~~~~~l~fL~~~v~  106 (161)
                      +|..+.++|++.+||+..     ...|.+.+.      .+.+..+++..++....  .|.+ ..+.+...++.|+...+.
T Consensus       310 ~~~~~~l~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~~~~~~~~~v~~~~l~fw~~l~~  382 (971)
T 2x1g_F          310 EDIIVHIYMLFVSSVERH-----STLLLSGITSADPELSILVHRIVQEILHCTDK--PGIYPVEESCSTMALAFWYMLQD  382 (971)
T ss_dssp             SHHHHHHHHHHHHHHHHT-----HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC--SSCTTTTCTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH-----HHHHHHHhccCcccccHHHHHHHHHHHHHHcC--CCCCCcchhhhHHHHHHHHHHHH
Confidence            388888999999998611     112221111      13334444444443322  1222 367788889999876543


Q ss_pred             ----------CchhhhcchhHHHHHHHHhHhccCcCCcchhccccCChHH
Q psy3383         107 ----------HGHCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDPHE  146 (161)
Q Consensus       107 ----------~~~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP~E  146 (161)
                                .+..+..++|++..|+..++....+.+++|  +.++||.|
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~--~~~~d~~e  430 (971)
T 2x1g_F          383 EVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS--LAKWSSDD  430 (971)
T ss_dssp             HHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT--TSCSCHHH
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc--ccccCHhH
Confidence                      245677889999999998888776544444  44447765

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.88  E-value=0.0095  Score=54.23  Aligned_cols=103  Identities=18%  Similarity=0.256  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhh-hHHHHHHHHHHHHHhhc--Ccc-cCHHHHHHHHHHHHHhhcC--
Q psy3383          34 KWALHILSRIFERYGSPGGVVSDYEEFARWYLKTF-SAGILDVLLATLAQYRA--GHY-ISPRVMQQALNYLTQAVGH--  107 (161)
Q Consensus        34 Kwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~-~~~~l~~~l~ll~~~~~--~~~-~~~~~~~~~l~fL~~~v~~--  107 (161)
                      .|..+.+++++.+||+         .....+.++. .++-+..+++.+-....  |.| ..+.+...++.|....++.  
T Consensus       302 ~~~~~~~~~l~~~~~~---------~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~  372 (963)
T 2x19_B          302 METSHGICRIAVALGE---------NHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDIL  372 (963)
T ss_dssp             HHHHHHHHHHHHHHHH---------HHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH---------HhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHH
Confidence            4778888899999886         2222333211 22333455555443322  233 2556777888888776651  


Q ss_pred             -------chhhhcchhHHHHHHHHhHhccCcCCcc-hhccccCChHH
Q psy3383         108 -------GHCWARLKPHATAIIQEVLFPFLSYTDA-DEELWSSDPHE  146 (161)
Q Consensus       108 -------~~~~~~lkp~l~~li~~vifP~l~~~~~-D~ElfedDP~E  146 (161)
                             +..+..++|++..|+. ++++.|+..++ +.+.|++|+.|
T Consensus       373 ~~~~~~~~~~~~~~~~~l~~l~~-~ll~~~~~p~~~~~~~~~~de~~  418 (963)
T 2x19_B          373 SFEAEKQAVYQQVYRPVYFQLVD-VLLHKAQFPSDEEYGFWSSDEKE  418 (963)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCHHHHHTSCHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHH-HHHHHHcCCCcccccCCChhHHH
Confidence                   4567788999999995 66666664332 23455555543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=95.74  E-value=0.0083  Score=49.12  Aligned_cols=94  Identities=16%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhH-HHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhc
Q psy3383          28 PWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSA-GILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVG  106 (161)
Q Consensus        28 ~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~-~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~  106 (161)
                      +-..+++++++++..+..+|+.         .|     .++++ .+++.++..+..      ..+.+...+++|+..+++
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~---------~~-----~~~~~~~l~~~~~~~~~~------~~~~v~~~a~~~l~~~~~  288 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQ---------YM-----ETYMGPALFAITIEAMKS------DIDEVALQGIEFWSNVCD  288 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGG---------GC-----TTTTTTTHHHHHHHHHHC------SSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHHcC------CchHHHHHHHHHHHHHHH
Confidence            3468899999999999999865         22     34555 666655554431      267888999999998875


Q ss_pred             Cc-------------------hhhhcchhHHHHHHHHhHhccCcCCcchhccccCCh
Q psy3383         107 HG-------------------HCWARLKPHATAIIQEVLFPFLSYTDADEELWSSDP  144 (161)
Q Consensus       107 ~~-------------------~~~~~lkp~l~~li~~vifP~l~~~~~D~ElfedDP  144 (161)
                      ..                   ..++.+++++..++. .++..  +++.|++++++++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p-~l~~~--l~~~d~d~~~~~~  342 (462)
T 1ibr_B          289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP-ILTQT--LTKQDENDDDDDW  342 (462)
T ss_dssp             HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH-HHHHH--TTCCCSSCCTTCC
T ss_pred             HHHHHHHhcccccccCCCccchhHHHHHHHhhhccH-HHHHH--HHhcccccccccc
Confidence            42                   344556777766664 34443  4455555565554

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=93.07  E-value=0.078  Score=46.94  Aligned_cols=62  Identities=13%  Similarity=0.233  Sum_probs=42.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhH-HHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhh
Q psy3383          27 TPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSA-GILDVLLATLAQYRAGHYISPRVMQQALNYLTQAV  105 (161)
Q Consensus        27 ~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~-~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v  105 (161)
                      .+-|+++++|+.++.++..+|+.         .|     .++++ .+++.++..+.   .   ..+.+...+++|+..++
T Consensus       235 ~~~~~~r~~a~~~l~~l~~~~~~---------~~-----~~~l~~~l~~~~~~~~~---~---~~~~vr~~a~~~l~~l~  294 (861)
T 2bpt_A          235 AEDIEVQAAAFGCLCKIMSKYYT---------FM-----KPYMEQALYALTIATMK---S---PNDKVASMTVEFWSTIC  294 (861)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHGG---------GC-----HHHHHHTHHHHHHHHTT---C---SSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHHc---C---CcHHHHHHHHHHHHHHH
Confidence            34689999999999999999875         23     23334 45444443332   1   25789999999999887


Q ss_pred             cCc
Q psy3383         106 GHG  108 (161)
Q Consensus       106 ~~~  108 (161)
                      +..
T Consensus       295 ~~~  297 (861)
T 2bpt_A          295 EEE  297 (861)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=80.97  E-value=2  Score=37.87  Aligned_cols=87  Identities=14%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhH-HHHHHHHHHHHHhhcCcccCHHHHHHHHHHHHHhhcC
Q psy3383          29 WWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSA-GILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGH  107 (161)
Q Consensus        29 ~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~-~~l~~~l~ll~~~~~~~~~~~~~~~~~l~fL~~~v~~  107 (161)
                      .+++++.|+.++.++..+|+.         .|     .++++ .++..+++.+.      ...+.+...+++|+..+++.
T Consensus       230 ~~~vr~~a~~~l~~l~~~~~~---------~~-----~~~~~~~l~~~~~~~~~------~~~~~v~~~al~~l~~l~~~  289 (876)
T 1qgr_A          230 DTRVRVAALQNLVKIMSLYYQ---------YM-----ETYMGPALFAITIEAMK------SDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHSGG---------GC-----HHHHTTTHHHHHHHHHT------CSSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhHH---------HH-----HHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHHHH
Confidence            357889999999999998875         22     23344 55555554332      12567888889888887653


Q ss_pred             c-------------------hhhhcchhHHHHHHHHhHhccCcCCcch
Q psy3383         108 G-------------------HCWARLKPHATAIIQEVLFPFLSYTDAD  136 (161)
Q Consensus       108 ~-------------------~~~~~lkp~l~~li~~vifP~l~~~~~D  136 (161)
                      .                   ..+..+++++..++. .++..|+-.++|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~ll~~l~~~~~d  336 (876)
T 1qgr_A          290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP-ILTQTLTKQDEN  336 (876)
T ss_dssp             HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH-HHHHHTTCCCSS
T ss_pred             HHhHhhhhccccccCCCccchhHHHHHHHHHHHhH-HHHHHhhccccc
Confidence            2                   234456778877775 566666654443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1wa5c_	959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	3e-18

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.4 bits (192), Expect = 3e-18
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 19/151 (12%)

Query: 1   MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEF 60
           M IF +      P   L   ++    +   K K     ++     RY          E+ 
Sbjct: 233 MGIFHKYLSYSNPL--LEDPDETEHASVLIKVKSSIQELVQLYTTRY----------EDV 280

Query: 61  ARWYLKTFSAGILDVLLATLAQYRAGHYISPRVMQQALNYLTQAVGHGHCWARLK--PHA 118
               +  F     ++L +   Q +        ++ ++L++LT        +         
Sbjct: 281 FGPMINEFIQITWNLLTSISNQPK-----YDILVSKSLSFLTAVTRIPKYFEIFNNESAM 335

Query: 119 TAIIQEVLFPFLSYTDADEELWSSDPHEYIR 149
             I ++++ P ++  + D EL+  DP EYIR
Sbjct: 336 NNITEQIILPNVTLREEDVELFEDDPIEYIR 366

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.59

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.7e-15  Score=132.30  Aligned_cols=140  Identities=18%  Similarity=0.290  Sum_probs=115.4

Q ss_pred             ChHHHHhhcCCCCCCCCCCChhhhccchhHHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHH
Q psy3383           1 MEIFRQVAERPVPEHTLTLDEDERADTPWWKCKKWALHILSRIFERYGSPGGVVSDYEEFARWYLKTFSAGILDVLLATL   80 (161)
Q Consensus         1 m~~f~~ii~~~~P~~~~~~d~~~r~~~~~wK~KKwa~~il~rl~~Ryg~~~~~~~~~~~fa~~f~~~~~~~~l~~~l~ll   80 (161)
                      |++|..+++.+.|  ....+++++....++++|||++.++.++..+|++         .|     .++++.|++.+++++
T Consensus       233 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~---------~~-----~~~~~~~~~~~~~~l  296 (959)
T d1wa5c_         233 MGIFHKYLSYSNP--LLEDPDETEHASVLIKVKSSIQELVQLYTTRYED---------VF-----GPMINEFIQITWNLL  296 (959)
T ss_dssp             HHHHHHHHSCCSC--CCC------CCCHHHHHHHHHHHHHHHHHHHCHH---------HH-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccc--cccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHH---------HH-----HHHHHHHHHHHHHHH
Confidence            3568888998887  3344455667788999999999999999999875         33     688899999999998


Q ss_pred             HHhhcCcccCHHHHHHHHHHHHHhhcCchhhhcc--hhHHHHHHHHhHhccCcCCcchhccccCChHHHHHHhccCcCC
Q psy3383          81 AQYRAGHYISPRVMQQALNYLTQAVGHGHCWARL--KPHATAIIQEVLFPFLSYTDADEELWSSDPHEYIRVKFGELGP  157 (161)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~fL~~~v~~~~~~~~l--kp~l~~li~~vifP~l~~~~~D~ElfedDP~EYIr~~~d~~~d  157 (161)
                      ..... ....+.++..++.|+..+++.+.+++.+  .+++..++.++|+|+++++++|.|+|++||.||++++.+..+.
T Consensus       297 ~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~  374 (959)
T d1wa5c_         297 TSISN-QPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDT  374 (959)
T ss_dssp             HHCCS-CTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC---
T ss_pred             HHHhc-ccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhccc
Confidence            88754 5568899999999999999999999876  5999999999999999999999999999999999998876544