Psyllid ID: psy3408

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MVRMSSLLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHVKTGRIELNLIIACSLDLRTE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccccccccEEEEccccHHHHHHHHHccccccEEEEEcccccccccccccHHHHHcccccccccccccccccccccccccEEEccccccccccHHHHHHHHccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHccccccccccHHHccccccEEEEcccHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHccccccccEEccccccHHHcccccccccccccEEcccccccEEEEEEcccccHcHHHHHccccccccc
Coil and Loop (DISEMBL)
MVRMSSLLLTLISTVFTVVStaednisgkfDFIIVGGGSAGAVLANRLSEELDWRVLLIEaggdppeaselpgyWFNLLKSRQdwayrtqpdnrmffglenrvnhwprgkglggfpatgliysnhvktgRIELNLIIACSLDLRTE
Flexible Loop (DISEMBL)
MVRMSSLLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGgdppeaseLPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHVKTGRIELNLIIAcsldlrte
Low Complexity Region (SEG)
MVRMSSLLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHVKTGRIELNLIIACSLDLRTE
Disordered region (IsUnstruct)
******LLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD***ASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHVKTGRIELNLIIACSLD****
Disordered Region (DISOPRED)
*VRMSSLLLTLIST**************KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHVKTGRIELNLIIA*SL*****
Disordered Region (DISEMBL)
MVRMSSLLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHVKTGRIELNLIIACSLDLRTE
Disordered Region (DISPRO)
MVRMSSLLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHVKTGRIELNLIIACSLDL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVRMSSLLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHVKTGRIELNLIIACSLDLRTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.643	0.150	0.452	1e-18
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.643	0.150	0.452	2e-18
Q9AJD6	507	Pyridoxine 4-oxidase OS=M	N/A	N/A	0.561	0.161	0.459	4e-12
A4XPI5	565	Choline dehydrogenase OS=	yes	N/A	0.568	0.146	0.463	6e-12
C6DKY4	559	Choline dehydrogenase OS=	yes	N/A	0.547	0.143	0.467	1e-11
A6VEI3	561	Choline dehydrogenase OS=	yes	N/A	0.568	0.147	0.463	2e-11
Q9HTJ2	561	Choline dehydrogenase OS=	yes	N/A	0.568	0.147	0.463	2e-11
B7V5R3	561	Choline dehydrogenase OS=	yes	N/A	0.568	0.147	0.463	2e-11
A8AJN0	558	Choline dehydrogenase OS=	yes	N/A	0.561	0.146	0.466	2e-11
Q02DZ0	561	Choline dehydrogenase OS=	yes	N/A	0.568	0.147	0.463	2e-11

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
           ++DFI++GGGSAG+V+A+RLSE   W+VLLIEAGGD P  +++P  + N + S  D+ Y 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 89  TQPDNRMFFGLENRVNHWPRGKGLGGFPA-TGLIY 122
           T+P+         +  +WPRGK LGG     G++Y
Sbjct: 124 TEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMY 158

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
           ++DFI++GGGSAG+V+A+RLSE   W+VLLIEAGGD P  +++P  + N + S  D+ Y 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 89  TQPDNRMFFGLENRVNHWPRGKGLGGFPA-TGLIY 122
           T+P+         +  +WPRGK LGG     G++Y
Sbjct: 124 TEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMY 158

Essential for cuticular modification during development.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|Q9AJD6|PNO_MICLT Pyridoxine 4-oxidase OS=Microbacterium luteolum GN=pno PE=1 SV=3

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL-PGYWFNLLKSRQDWAY 87
           ++D  I+G GSAGA++A RLSE+    VLLIEAGG P +   L P  W  +     DW Y
Sbjct: 3   QYDVAIIGAGSAGALIAARLSEDPARNVLLIEAGGRPSDPDILKPSMWPAIQHRSYDWDY 62

Query: 88  RTQPDNRMFFGLENRVNHWPRGKGLGG 114
           +T P      G   R   W RGKGLGG
Sbjct: 63  KTTPQE----GAAGRSFAWARGKGLGG 85

Microbacterium luteolum (taxid: 69367)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 2

>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA PE=3 SV=1

 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)

Query: 26  ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
           +S +FD+II+G GSAG VLA RL+E+ D  VLL+EAGG  P+      +++P    F L 
Sbjct: 1   MSHEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRLDFRTQMPAALAFPLQ 58

Query: 80  KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
             R +WAY T P+  M     NR     RGKGLGG
Sbjct: 59  GRRYNWAYETDPEPHM----NNRRMECGRGKGLGG 89

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 12/92 (13%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
           ++D+II+G GSAG VLA RL+EE D  VLL+EAGG  P+      +++P    F L   R
Sbjct: 2   EYDYIIIGAGSAGNVLATRLTEESDVSVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59

Query: 83  QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
            +WAY T P+  M     NR     RGKGLGG
Sbjct: 60  YNWAYETDPEPHM----NNRRMECGRGKGLGG 87

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A6VEI3|BETA_PSEA7 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=betA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)

Query: 26  ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
           +S +FD+II+G GSAG VLA RL+E+ D  VLL+EAGG  P+      +++P    F L 
Sbjct: 1   MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRFDFRTQMPAALAFPLQ 58

Query: 80  KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
             R +WAY T P+  M     NR     RGKGLGG
Sbjct: 59  GRRYNWAYETDPEPYM----NNRRMECGRGKGLGG 89

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas aeruginosa (strain PA7) (taxid: 381754)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q9HTJ2|BETA_PSEAE Choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=betA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)

Query: 26  ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
           +S +FD+II+G GSAG VLA RL+E+ D  VLL+EAGG  P+      +++P    F L 
Sbjct: 1   MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRFDFRTQMPAALAFPLQ 58

Query: 80  KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
             R +WAY T P+  M     NR     RGKGLGG
Sbjct: 59  GRRYNWAYETDPEPYM----NNRRMECGRGKGLGG 89

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B7V5R3|BETA_PSEA8 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=betA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)

Query: 26  ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
           +S +FD+II+G GSAG VLA RL+E+ D  VLL+EAGG  P+      +++P    F L 
Sbjct: 1   MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRFDFRTQMPAALAFPLQ 58

Query: 80  KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
             R +WAY T P+  M     NR     RGKGLGG
Sbjct: 59  GRRYNWAYETDPEPYM----NNRRMECGRGKGLGG 89

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas aeruginosa (strain LESB58) (taxid: 557722)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 8/90 (8%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEA---SELPGYW-FNLLKSRQD 84
            FD+II+G GSAG VLA RL+E+ D  VLL+EAGG    A   +++P    F L   R +
Sbjct: 2   HFDYIIIGAGSAGNVLATRLTEDSDTTVLLLEAGGPDYRADFRTQMPAALAFPLQGKRYN 61

Query: 85  WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           WAY T+P+  M +    R     RGKGLGG
Sbjct: 62  WAYETEPEPHMNY----RRMECGRGKGLGG 87

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q02DZ0|BETA_PSEAB Choline dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=betA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)

Query: 26  ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
           +S +FD+II+G GSAG VLA RL+E+ D  VLL+EAGG  P+      +++P    F L 
Sbjct: 1   MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRFDFRTQMPAALAFPLQ 58

Query: 80  KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
             R +WAY T P+  M     NR     RGKGLGG
Sbjct: 59  GRRYNWAYETDPEPYM----NNRRMECGRGKGLGG 89

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas aeruginosa (strain UCBPP-PA14) (taxid: 208963)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
195566782	845	GD15828 [Drosophila simulans] gi|1942043	0.760	0.131	0.421	7e-20
198471152	691	GA21849 [Drosophila pseudoobscura pseudo	0.616	0.130	0.533	8e-20
195174259	551	GL27090 [Drosophila persimilis] gi|19411	0.616	0.163	0.533	1e-19
194894917	648	GG19433 [Drosophila erecta] gi|190649793	0.760	0.171	0.410	1e-19
195354607	648	GM12020 [Drosophila sechellia] gi|194129	0.760	0.171	0.421	1e-19
195432695	658	GK19744 [Drosophila willistoni] gi|19416	0.616	0.136	0.533	2e-19
350425602	605	PREDICTED: glucose dehydrogenase [accept	0.890	0.214	0.416	3e-19
242011451	616	glucose dehydrogenase precursor, putativ	0.589	0.139	0.523	3e-19
24642051	646	CG9509 [Drosophila melanogaster] gi|7293	0.739	0.167	0.429	3e-19
195354593	601	GM12028 [Drosophila sechellia] gi|194129	0.616	0.149	0.522	3e-19

>gi|195566782|ref|XP_002106955.1| GD15828 [Drosophila simulans] gi|194204351|gb|EDX17927.1| GD15828 [Drosophila simulans]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 78/121 (64%), Gaps = 10/121 (8%)

Query: 4   MSSLLLTLISTVFT---VVSTAED-------NISGKFDFIIVGGGSAGAVLANRLSEELD 53
           +S ++  L+ T+ +   +VS A         ++S  +DF+++G GSAG+V+A+RLSE  D
Sbjct: 232 LSGMVTVLVQTLLSSQCLVSPASQWPVDYVGDLSQPYDFVVIGAGSAGSVVASRLSENPD 291

Query: 54  WRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLG 113
           WRVL++EAGGDPP  SELP  +F L  ++  W Y T+P +    G+++   +WPRGK LG
Sbjct: 292 WRVLVLEAGGDPPIESELPALFFGLQHTKFTWNYFTEPSDDACQGMKDGRCYWPRGKMLG 351

Query: 114 G 114
           G
Sbjct: 352 G 352

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198471152|ref|XP_001355514.2| GA21849 [Drosophila pseudoobscura pseudoobscura] gi|198145790|gb|EAL32573.2| GA21849 [Drosophila pseudoobscura pseudoobscura]

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 64/90 (71%)

Query: 25  NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQD 84
           N+  ++DFI+VG GSAGAV+ANRLSE   W+VLLIEAG D  E S++P     L  S+ D
Sbjct: 52  NLYPEYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLD 111

Query: 85  WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           WAY+T+P N+   G++N   +WPRG+ LGG
Sbjct: 112 WAYKTEPSNKACLGMQNNRCNWPRGRVLGG 141

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195174259|ref|XP_002027896.1| GL27090 [Drosophila persimilis] gi|194115585|gb|EDW37628.1| GL27090 [Drosophila persimilis]

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 64/90 (71%)

Query: 25  NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQD 84
           N+  ++DFI+VG GSAGAV+ANRLSE   W+VLLIEAG D  E S++P     L  S+ D
Sbjct: 52  NLYPEYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLD 111

Query: 85  WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           WAY+T+P N+   G++N   +WPRG+ LGG
Sbjct: 112 WAYKTEPSNKACLGMQNNRCNWPRGRVLGG 141

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894917|ref|XP_001978144.1| GG19433 [Drosophila erecta] gi|190649793|gb|EDV47071.1| GG19433 [Drosophila erecta]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 76/117 (64%), Gaps = 6/117 (5%)

Query: 4   MSSLLLTLISTVFTVVSTAE------DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVL 57
           M+ L+ +L+S+   +   ++       ++S  +DF+++G GSAG+V+A+RLSE  DW+VL
Sbjct: 39  MTVLVQSLLSSQCLISPASQWPVDYVGDLSQPYDFVVIGAGSAGSVVASRLSENPDWKVL 98

Query: 58  LIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           ++EAGGDPP  SELP  +F L  ++  W Y T+P +    G++    +WPRGK LGG
Sbjct: 99  VLEAGGDPPIESELPALFFGLQHTKFMWNYFTEPSDEACLGMKEGRCYWPRGKMLGG 155

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354607|ref|XP_002043788.1| GM12020 [Drosophila sechellia] gi|194129014|gb|EDW51057.1| GM12020 [Drosophila sechellia]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 10/121 (8%)

Query: 4   MSSLLLTLISTVFT---VVSTAED-------NISGKFDFIIVGGGSAGAVLANRLSEELD 53
           +S ++  L+ T+ +   +VS A         ++S  +DF+++G GSAG+V+A+RLSE  D
Sbjct: 35  LSGMVTVLVQTLLSSQCLVSPASQWPVDYVGDLSQPYDFVVIGAGSAGSVVASRLSENPD 94

Query: 54  WRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLG 113
           WRVL++EAGGDPP  SELP  +F L  +   W Y T+P +    G+++   +WPRGK LG
Sbjct: 95  WRVLVLEAGGDPPIESELPALFFGLQHTNFTWNYFTEPSDDACQGMKDGRCYWPRGKMLG 154

Query: 114 G 114
           G
Sbjct: 155 G 155

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432695|ref|XP_002064352.1| GK19744 [Drosophila willistoni] gi|194160437|gb|EDW75338.1| GK19744 [Drosophila willistoni]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 64/90 (71%)

Query: 25  NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQD 84
           N+  ++DFI+VG GSAGAV+ANRLSE   W+VLLIEAG D  E S++P     L  S+ D
Sbjct: 52  NLWPEYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLD 111

Query: 85  WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           WAY+T+P N+   G++N   +WPRG+ LGG
Sbjct: 112 WAYKTEPSNKACLGMQNNRCNWPRGRVLGG 141

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425602|ref|XP_003494173.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus impatiens]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 7/137 (5%)

Query: 4   MSSLLLTLISTVFTVVSTAEDNISGK-----FDFIIVGGGSAGAVLANRLSEELDWRVLL 58
           +S LL   + TV+++V  +  NIS K     +DF IVGGGSAG V+ANRLSE  DW VLL
Sbjct: 17  LSILLGMSLYTVYSIVPYSSYNISSKSLLPTYDFTIVGGGSAGTVMANRLSEVEDWDVLL 76

Query: 59  IEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPAT 118
           +EAG D     ++P    NL +S  DW Y T+P+      +E     WPRGK LGG  ++
Sbjct: 77  LEAGADGSAMYDVPTLATNLQRSEIDWNYTTEPNENYCLAMEGGQCRWPRGKVLGG--SS 134

Query: 119 GLIYSNHVKTGRIELNL 135
           G+ Y  +V+  + + ++
Sbjct: 135 GINYMLYVRGAKKDYDI 151

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|242011451|ref|XP_002426463.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212510575|gb|EEB13725.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 62/86 (72%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
           ++DFI+VGGGSAG+V+A+RLSE   W+VLLIEAGG+ P  +++P  +FN + S  DW Y+
Sbjct: 58  EYDFIVVGGGSAGSVVASRLSEIPHWKVLLIEAGGNEPTGAQVPSMFFNFVGSNIDWNYK 117

Query: 89  TQPDNRMFFGLENRVNHWPRGKGLGG 114
           T+P++R       R   WPRGK LGG
Sbjct: 118 TEPEDRACLNEPERRCSWPRGKVLGG 143

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24642051|ref|NP_572983.1| CG9509 [Drosophila melanogaster] gi|7293015|gb|AAF48402.1| CG9509 [Drosophila melanogaster]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 6/114 (5%)

Query: 7   LLLTLISTVFTVVSTAE------DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
           L+ TL+S+   V   ++       ++S  +DF+++G GSAG+V+A+RLSE  DWRVL++E
Sbjct: 40  LVQTLLSSQCLVSPASQWPVDYVGDLSQPYDFVVIGAGSAGSVVASRLSENPDWRVLVLE 99

Query: 61  AGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           AGGDPP  SELP  +F L  +   W Y T+P +     +++   +WPRGK LGG
Sbjct: 100 AGGDPPVESELPALFFGLQHTNFTWNYFTEPSDEACQAMKDGRCYWPRGKMLGG 153

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354593|ref|XP_002043781.1| GM12028 [Drosophila sechellia] gi|194129007|gb|EDW51050.1| GM12028 [Drosophila sechellia]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 63/90 (70%)

Query: 25  NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQD 84
           N+  ++DFI+VG GSAGAV+ANRLSE   W+VLLIEAG D  E S++P     L  S+ D
Sbjct: 52  NLYPEYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLD 111

Query: 85  WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           WAY+T+P  +   G++N   +WPRG+ LGG
Sbjct: 112 WAYKTEPSTKACLGMQNNRCNWPRGRVLGG 141

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.712	0.147	0.481	3.3e-20
FB|FBgn0030594	646	CG9509 [Drosophila melanogaste	0.616	0.139	0.488	1.6e-19
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.636	0.148	0.468	3.8e-18
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.623	0.143	0.472	1.7e-17
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.623	0.145	0.472	2.1e-17
FB|FBgn0030593	623	CG9512 [Drosophila melanogaste	0.643	0.150	0.431	2.7e-17
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.582	0.117	0.517	7.5e-17
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.609	0.102	0.483	2.7e-16
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.609	0.143	0.460	1.8e-15
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.609	0.143	0.438	4.9e-15

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 3.3e-20, P = 3.3e-20
 Identities = 51/106 (48%), Positives = 71/106 (66%)

Query:    25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQD 84
             N+  ++DFI+VG GSAGAV+ANRLSE   W+VLLIEAG D  E S++P     L  S+ D
Sbjct:    52 NLYPEYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLD 111

Query:    85 WAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHVKTGR 130
             WAY+T+P  +   G++N   +WPRG+ LGG  ++ L Y  +V+  R
Sbjct:   112 WAYKTEPSTKACLGMQNNRCNWPRGRVLGG--SSVLNYMLYVRGNR 155

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030594 CG9509 [Drosophila melanogaster (taxid:7227)]

 Score = 242 (90.2 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 44/90 (48%), Positives = 63/90 (70%)

Query:    25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQD 84
             ++S  +DF+++G GSAG+V+A+RLSE  DWRVL++EAGGDPP  SELP  +F L  +   
Sbjct:    64 DLSQPYDFVVIGAGSAGSVVASRLSENPDWRVLVLEAGGDPPVESELPALFFGLQHTNFT 123

Query:    85 WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
             W Y T+P +     +++   +WPRGK LGG
Sbjct:   124 WNYFTEPSDEACQAMKDGRCYWPRGKMLGG 153

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0007498 "mesoderm development" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 3.8e-18, P = 3.8e-18
 Identities = 45/96 (46%), Positives = 65/96 (67%)

Query:    29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
             ++DFI++GGGSAG+V+A+RLSE   W+VLLIEAGGD P  +++P  + N + S  D+ Y 
Sbjct:    64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query:    89 TQPDNRMFFG-LENRVNHWPRGKGLGGFPA-TGLIY 122
             T+P+       +E R  +WPRGK LGG     G++Y
Sbjct:   124 TEPEPMACLSSMEQRC-YWPRGKVLGGTSVLNGMMY 158

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 43/91 (47%), Positives = 59/91 (64%)

Query:    24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQ 83
             +++   +DFI++GGGSAG VLA RLSE  +W VLL+EAGGD P   +LP  +    +S  
Sbjct:    51 EDLRESYDFIVIGGGSAGCVLAARLSENPEWSVLLLEAGGDEPLLIDLPQLYPVFQRSPW 110

Query:    84 DWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
             DW Y T+P +R    +E++   WPR K LGG
Sbjct:   111 DWKYLTEPSDRYCLAMEDQRCFWPRAKVLGG 141

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 222 (83.2 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 43/91 (47%), Positives = 60/91 (65%)

Query:    24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQ 83
             D+I   +DFI++G GSAGAV+ANRL+E  +W VLL+EAGGD  E +++P     L  S+ 
Sbjct:    54 DDILDHYDFIVIGAGSAGAVVANRLTEVENWNVLLLEAGGDETELTDVPLMAGYLQLSKI 113

Query:    84 DWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
             DW Y+T+P       ++    +WPRGK LGG
Sbjct:   114 DWQYKTEPSGTSCLAMQGGRCNWPRGKVLGG 144

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 41/95 (43%), Positives = 60/95 (63%)

Query:    30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRT 89
             +DFI++G G++GAV+A RL+E  +W+VLL+EAGGDPP  +E   +      S  DW Y +
Sbjct:    58 YDFIVIGSGTSGAVVAGRLAEVKNWKVLLLEAGGDPPIETEFVAWHMATQFSEWDWQYHS 117

Query:    90 QPDNRMFFGLENRVNHWPRGKGLGGFPA-TGLIYS 123
             +P+ R    ++    HWPRGK LGG      +IY+
Sbjct:   118 KPNGRACMAMKGESCHWPRGKMLGGTNGMNAMIYA 152

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 218 (81.8 bits), Expect = 7.5e-17, P = 7.5e-17
 Identities = 44/85 (51%), Positives = 57/85 (67%)

Query:    30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRT 89
             +DFII+GGGSAG VLA+RLSE   W++LL+EAGG   E S++P     L KS+ DW YRT
Sbjct:    95 YDFIIIGGGSAGTVLASRLSEIPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRT 154

Query:    90 QPDNRMFFGLENRVNHWPRGKGLGG 114
             QP       ++++   W RGK LGG
Sbjct:   155 QPQPTACQAMKDKRCCWTRGKVLGG 179

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 44/91 (48%), Positives = 60/91 (65%)

Query:    26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW 85
             I  ++DF+++GGGSAGAV+ANRLSE  +W VLL+EAGGD  E S++P     L  +  DW
Sbjct:   292 IRRQYDFVVIGGGSAGAVVANRLSEVRNWTVLLLEAGGDETEISDVPALAGYLQLTELDW 351

Query:    86 AYRTQPDN-RMFF-GLENRVNHWPRGKGLGG 114
              Y+T P + R +   ++     WPRGK LGG
Sbjct:   352 KYQTTPSSTRQYCQAMKGDRCFWPRGKVLGG 382

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 41/89 (46%), Positives = 54/89 (60%)

Query:    26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW 85
             I+ K+DFI+VG G+AG  LA RLSE   WRVLL+EAGG    A ++P     L     +W
Sbjct:    58 ITTKYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYAMDIPIVAHLLQLGEINW 117

Query:    86 AYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
              Y+T+P N     + N   +WPRGK +GG
Sbjct:   118 KYKTEPSNSYCLAMNNNRCNWPRGKVMGG 146

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 200 (75.5 bits), Expect = 4.9e-15, P = 4.9e-15
 Identities = 39/89 (43%), Positives = 52/89 (58%)

Query:    26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW 85
             +  ++DFI+VG G+AG  LA RLSE   WRVLL+EAGG      ++P     L     +W
Sbjct:    56 LDSEYDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVMDVPIVAHFLQLGEMNW 115

Query:    86 AYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
              YRTQP +     + N   +WPRGK +GG
Sbjct:   116 KYRTQPSDHACLAMNNNRCNWPRGKVMGG 144

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	146
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-24
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	7e-19
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	7e-15
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	4e-08
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	2e-05
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	3e-05
TIGR00031	377	TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mu	4e-05
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	7e-05
COG0562	374	COG0562, Glf, UDP-galactopyranose mutase [Cell env	7e-05
PRK05732	395	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl h	1e-04
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	2e-04
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	3e-04
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	6e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	6e-04
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	7e-04
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	0.001
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	0.001
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	0.001
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	0.001
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.003
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	0.003
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	0.004
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	0.004

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 97.6 bits (244), Expect = 1e-24
 Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 8/90 (8%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS---ELP-GYWFNLLKSRQD 84
           ++D+II+G GSAG VLANRLSE+ D  VLL+EAGG         ++P    F L   R +
Sbjct: 5   EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYN 64

Query: 85  WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           WAY T+P+  M     NR    PRGK LGG
Sbjct: 65  WAYETEPEPHM----NNRRMECPRGKVLGG 90

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 81.3 bits (201), Expect = 7e-19
 Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 7/93 (7%)

Query: 24  DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG-DPPEASELP-GYWFNLLKS 81
             +  ++D++IVG GSAG+VLA RLS+     VL++EAGG D     ++P  Y F +   
Sbjct: 2   SEMKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGP 60

Query: 82  RQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           R DW +RT+P+      L  R   WPRGK LGG
Sbjct: 61  RYDWGFRTEPEP----HLRGRELAWPRGKVLGG 89

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 69.9 bits (171), Expect = 7e-15
 Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 19/102 (18%)

Query: 31  DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG-----DP----PEASELPGYWFNLLKS 81
           D+II+GGGSAG+VLA RLSE++   VL++EAGG     D     P A   P         
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYP-----AGNK 55

Query: 82  RQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPA-TGLIY 122
           R +W Y T+P+  M     NR     RGK LGG  +  G+IY
Sbjct: 56  RYNWIYETEPEPHM----NNRRVGHARGKVLGGSSSINGMIY 93

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELP 72
          D ++VGGGSAG V+A RLSE+    V ++EAG    + S LP
Sbjct: 2  DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLP 43

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
          +D+I+VGGG+AG  LA  LS   ++ VLL+E GG P
Sbjct: 56 YDYIVVGGGTAGCPLAATLS--QNFSVLLLERGGVP 89

Length = 587

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGY 74
          D +IVGGG  G  LA  L+     +V LIEA   P  A   PG+
Sbjct: 1  DIVIVGGGPVGLALALALARSGGLKVALIEAT--PLPAPADPGF 42

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 1/32 (3%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
           FD+IIVG G +G VLAN L+ +L+ RVL++E
Sbjct: 1  MFDYIIVGAGLSGIVLANILA-QLNKRVLVVE 31

This enzyme is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate. It contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 377

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA---GGD 64
          + ++D I++G G AG  LA R +  L  +V LIE    GG 
Sbjct: 3  AQRYDAIVIGAGQAGPPLAARAA-GLGMKVALIERGLLGGT 42

Length = 463

>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
           FD++IVG G +GAV+A   + +L  RVL++E 
Sbjct: 1  MFDYLIVGAGLSGAVIAEVAA-QLGKRVLIVEK 32

Length = 374

>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 29 KFDFIIVGGGSAGAVLA---NRLSEELDWRVLLIEAGGDPPEASELPGY 74
          + D IIVGGG AGA LA   +RLS      V LIEA    PE+   PG+
Sbjct: 3  RMDVIIVGGGMAGATLALALSRLSHG-GLPVALIEAFA--PESDAHPGF 48

Length = 395

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 31 DFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPP 66
          D +IVG G AG +LA RL +     RVLLI+AG  PP
Sbjct: 1  DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPP 37

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
          ++D +++G G AG V A R + +L  +V L+E G 
Sbjct: 4  EYDVVVIGAGPAGYVAAIRAA-QLGLKVALVEKGE 37

Length = 454

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
          D IIVGGG  G  LA  LS     ++ LIEA
Sbjct: 1  DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
          ++D +IVG G AG+  A RL+ +    VL++E G +P
Sbjct: 3  EYDVVIVGAGPAGSSAARRLA-KAGLDVLVLEKGSEP 38

Length = 396

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 29 KFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIE 60
           +D +I+GGG  GA  A  LSE E D  V L+E
Sbjct: 3  DYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35

Length = 429

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
          IVG G +G V A  L++     VL++E     
Sbjct: 1  IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDRI 31

Length = 66

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
          S K D +I+GGG  G   A  L+E     V ++EAG     A+
Sbjct: 2  SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGGGAA 43

Length = 387

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 22/89 (24%)

Query: 30 FDFIIVGGGSAGAVLANRLSEEL---DWRVLLIEAGGDPPEASE----LPGYWFN----- 77
          FD +IVGGG  G  LA  L       D +VLL++A  +P   S       G + N     
Sbjct: 1  FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSI 60

Query: 78 ------LLKSRQDWAY----RTQPDNRMF 96
                  K    W +    R QP  RM 
Sbjct: 61 TPASISFFKKIGAWDHIQSDRIQPFGRMQ 89

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
          K+D I++G G AG V A R ++    +V LIE G
Sbjct: 3  KYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKG 35

Length = 460

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66
          D +I+GGG AG   A RL+  L  +V LIE  G   
Sbjct: 1  DVVIIGGGPAGLAAAIRLA-RLGLKVALIEREGGTC 35

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 24/105 (22%), Positives = 29/105 (27%), Gaps = 10/105 (9%)

Query: 30  FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE----ASELPGYWFNLLKSRQDW 85
            D  IVG G AG  LA  L+      V L+E              L       L+    W
Sbjct: 3   LDVAIVGAGPAGLALALALARA-GLDVTLLERAPRELLERGRGIALSPNALRALERLGLW 61

Query: 86  ----AYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHV 126
               A    P + M      R         LG   A G +     
Sbjct: 62  DRLEALGVPPLHVMVVDDGGRRLLIFDAAELGR-GALGYVVPRSD 105

Length = 387

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
          +D IIVGG  AG VLA  LS++   +VL++E
Sbjct: 34 YDVIIVGGSIAGPVLAKALSKQ-GRKVLMLE 63

Length = 567

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
          D +++GGG  G   A  L+      V L+E G     AS
Sbjct: 1  DVVVIGGGIVGLSTAYELARR-GLSVTLLERGDLASGAS 38

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
KOG1238|consensus	623		99.94
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.86
PRK02106	560	choline dehydrogenase; Validated	99.85
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	99.83
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	99.82
PLN02785	587	Protein HOTHEAD	99.79
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.95
COG2081	408	Predicted flavoproteins [General function predicti	98.85
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.75
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.66
PRK10157	428	putative oxidoreductase FixC; Provisional	98.63
PRK10015	429	oxidoreductase; Provisional	98.62
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.61
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.57
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.55
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.5
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.48
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.47
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.47
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.47
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.46
PRK09126	392	hypothetical protein; Provisional	98.46
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.45
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.44
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.41
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.41
PRK08013	400	oxidoreductase; Provisional	98.4
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.37
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.37
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.36
PRK07045	388	putative monooxygenase; Reviewed	98.35
PRK08274	466	tricarballylate dehydrogenase; Validated	98.35
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.34
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.34
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.34
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.34
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.34
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.34
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.34
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.34
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.33
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.33
PRK06116	450	glutathione reductase; Validated	98.32
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.32
PRK06370	463	mercuric reductase; Validated	98.32
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.31
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.3
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.3
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.29
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.29
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.29
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.29
PLN02985	514	squalene monooxygenase	98.28
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.28
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.28
PRK06185	407	hypothetical protein; Provisional	98.27
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.27
PRK08244	493	hypothetical protein; Provisional	98.27
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.27
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.26
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.26
PRK06184	502	hypothetical protein; Provisional	98.26
PRK07208	479	hypothetical protein; Provisional	98.26
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.24
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.24
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.24
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.24
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.24
PRK07121	492	hypothetical protein; Validated	98.23
PLN02676	487	polyamine oxidase	98.23
PLN02463	447	lycopene beta cyclase	98.23
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.22
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.22
KOG0029|consensus	501		98.21
PRK07190	487	hypothetical protein; Provisional	98.21
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.21
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.21
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.21
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.2
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.2
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.2
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.2
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.2
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.19
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.19
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.19
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.19
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.19
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.19
KOG1298|consensus	509		98.19
PRK06847	375	hypothetical protein; Provisional	98.18
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.18
TIGR02053	463	MerA mercuric reductase. This model represents the	98.18
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.18
PRK06834	488	hypothetical protein; Provisional	98.17
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.17
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.16
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.16
PLN02268	435	probable polyamine oxidase	98.16
PLN02661	357	Putative thiazole synthesis	98.15
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.15
PRK07236	386	hypothetical protein; Provisional	98.15
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.15
PTZ00367	567	squalene epoxidase; Provisional	98.15
PRK06753	373	hypothetical protein; Provisional	98.14
PRK07804	541	L-aspartate oxidase; Provisional	98.14
PLN02576	496	protoporphyrinogen oxidase	98.14
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.13
PRK14694	468	putative mercuric reductase; Provisional	98.13
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.13
PRK08163	396	salicylate hydroxylase; Provisional	98.13
PRK07233	434	hypothetical protein; Provisional	98.13
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.13
PRK13748	561	putative mercuric reductase; Provisional	98.12
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.12
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.12
PRK07588	391	hypothetical protein; Provisional	98.11
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.11
PLN02697	529	lycopene epsilon cyclase	98.11
PRK05257	494	malate:quinone oxidoreductase; Validated	98.11
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.11
PRK06996	398	hypothetical protein; Provisional	98.11
PTZ00058	561	glutathione reductase; Provisional	98.1
PRK06126	545	hypothetical protein; Provisional	98.1
PLN02507	499	glutathione reductase	98.09
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.08
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.08
PRK11445	351	putative oxidoreductase; Provisional	98.08
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.07
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.06
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.05
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.05
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.05
PTZ00052	499	thioredoxin reductase; Provisional	98.04
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.04
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.04
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.04
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.03
PRK07538	413	hypothetical protein; Provisional	98.02
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.01
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.01
PRK14727	479	putative mercuric reductase; Provisional	98.0
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.0
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.0
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.0
PRK10262	321	thioredoxin reductase; Provisional	97.99
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.99
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.99
PLN02546	558	glutathione reductase	97.99
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.98
COG3573	552	Predicted oxidoreductase [General function predict	97.98
PRK06175	433	L-aspartate oxidase; Provisional	97.98
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.98
PRK08401	466	L-aspartate oxidase; Provisional	97.97
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.97
PRK08294	634	phenol 2-monooxygenase; Provisional	97.97
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.97
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.96
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.96
PLN02815	594	L-aspartate oxidase	97.95
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.95
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.95
PRK08275	554	putative oxidoreductase; Provisional	97.95
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.93
PRK05868	372	hypothetical protein; Validated	97.93
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.93
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.93
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.93
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.92
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.92
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.91
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.91
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.91
COG0579	429	Predicted dehydrogenase [General function predicti	97.91
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.89
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.89
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.89
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.87
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.87
PRK06475	400	salicylate hydroxylase; Provisional	97.87
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.86
PLN02568	539	polyamine oxidase	97.86
PRK07395	553	L-aspartate oxidase; Provisional	97.86
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.85
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.82
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.82
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.82
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.81
PRK12839	572	hypothetical protein; Provisional	97.8
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.79
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.78
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.78
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.78
COG3349	485	Uncharacterized conserved protein [Function unknow	97.78
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.77
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.77
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.76
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.75
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.75
PRK08071	510	L-aspartate oxidase; Provisional	97.74
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.74
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.73
PRK09077	536	L-aspartate oxidase; Provisional	97.73
KOG2820|consensus	399		97.73
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.73
PRK12831	464	putative oxidoreductase; Provisional	97.72
KOG2415|consensus	621		97.72
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.69
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.67
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.66
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.65
PLN02852	491	ferredoxin-NADP+ reductase	97.63
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.62
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.62
KOG1399|consensus	448		97.62
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.61
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.6
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.59
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.58
PLN02529	738	lysine-specific histone demethylase 1	97.56
PRK07846	451	mycothione reductase; Reviewed	97.56
PLN02612	567	phytoene desaturase	97.56
KOG2614|consensus	420		97.53
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.53
PRK07512	513	L-aspartate oxidase; Provisional	97.52
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.51
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.51
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.51
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.51
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.49
PLN02487	569	zeta-carotene desaturase	97.48
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.47
KOG0685|consensus	498		97.47
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.47
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.47
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.46
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.45
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.44
KOG2665|consensus	453		97.41
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.41
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.4
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.38
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.38
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.35
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.29
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.25
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.24
PLN03000	881	amine oxidase	97.23
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.22
KOG3855|consensus	481		97.2
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.18
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.14
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.14
PTZ00188	506	adrenodoxin reductase; Provisional	97.13
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.11
KOG1335|consensus	506		97.1
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.03
PLN02976	1713	amine oxidase	97.03
KOG4716|consensus	503		97.03
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.03
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.96
KOG2853|consensus	509		96.96
PRK13984	604	putative oxidoreductase; Provisional	96.94
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.92
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.88
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.84
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.76
KOG4254|consensus	561		96.75
KOG0405|consensus	478		96.69
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.66
KOG2960|consensus	328		96.63
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.6
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	96.59
KOG0042|consensus	680		96.56
PRK09897	534	hypothetical protein; Provisional	96.55
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.51
KOG2311|consensus	679		96.46
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.3
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.22
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.11
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.03
KOG1276|consensus	491		95.96
KOG4405|consensus	547		95.94
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	95.8
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.7
KOG0399|consensus	2142		95.69
KOG1800|consensus	468		95.61
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.55
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.53
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	95.46
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.35
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.3
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.23
KOG2404|consensus	477		95.06
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.04
KOG1439|consensus	440		95.01
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	94.99
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.9
PRK14989	847	nitrite reductase subunit NirD; Provisional	94.89
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.88
KOG2844|consensus	856		94.88
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	94.87
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	94.79
TIGR02053	463	MerA mercuric reductase. This model represents the	94.77
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.77
KOG3851|consensus	446		94.73
PRK07846	451	mycothione reductase; Reviewed	94.7
KOG2755|consensus	334		94.64
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	94.63
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	94.6
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	94.58
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.53
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	94.49
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.46
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.46
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	94.44
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.4
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	94.39
PRK06370	463	mercuric reductase; Validated	94.32
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	94.31
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.19
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.18
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.17
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.16
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	94.03
PRK09564	444	coenzyme A disulfide reductase; Reviewed	93.92
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.9
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	93.86
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	93.75
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.72
KOG0404|consensus	322		93.71
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.69
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.65
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	93.64
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	93.5
PRK07845	466	flavoprotein disulfide reductase; Reviewed	93.37
PRK10262	321	thioredoxin reductase; Provisional	93.36
PLN02507	499	glutathione reductase	93.35
PRK06116	450	glutathione reductase; Validated	93.34
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.33
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.33
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	93.17
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.03
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	92.98
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.87
PTZ00153	659	lipoamide dehydrogenase; Provisional	92.83
PRK13748	561	putative mercuric reductase; Provisional	92.76
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	92.71
PTZ00058	561	glutathione reductase; Provisional	92.71
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.71
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.71
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	92.65
PRK14694	468	putative mercuric reductase; Provisional	92.57
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.5
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.49
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	92.39
PRK14727	479	putative mercuric reductase; Provisional	92.34
PLN02546	558	glutathione reductase	92.33
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	92.28
PRK12770	352	putative glutamate synthase subunit beta; Provisio	91.82
PRK14989	847	nitrite reductase subunit NirD; Provisional	91.81
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.78
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.71
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	91.7
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.67
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	91.65
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.61
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.61
PTZ00052	499	thioredoxin reductase; Provisional	91.39
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.28
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	91.06
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.02
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.81
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.73
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	90.72
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	90.63
PRK06719	157	precorrin-2 dehydrogenase; Validated	90.62
PRK10669	558	putative cation:proton antiport protein; Provision	90.41
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	90.32
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.96
PRK12831	464	putative oxidoreductase; Provisional	89.96
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.44
PRK09496	453	trkA potassium transporter peripheral membrane com	89.39
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	89.23
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	88.99
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	88.89
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	88.86
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.82
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	88.68
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	88.65
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	88.45
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	88.42
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	88.23
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	88.16
PRK09496	453	trkA potassium transporter peripheral membrane com	87.98
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	87.95
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	87.94
PRK04148	134	hypothetical protein; Provisional	87.89
PRK15116	268	sulfur acceptor protein CsdL; Provisional	87.88
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	87.88
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	87.79
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	87.41
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	87.15
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	87.03
PRK07417	279	arogenate dehydrogenase; Reviewed	86.99
KOG2852|consensus	380		86.91
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	86.9
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	86.74
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	86.7
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	86.46
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	86.32
PRK11730	715	fadB multifunctional fatty acid oxidation complex	86.23
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	86.22
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	86.13
PRK03659	601	glutathione-regulated potassium-efflux system prot	86.07
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	86.01
PRK03562	621	glutathione-regulated potassium-efflux system prot	85.97
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	85.91
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.91
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	85.84
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	85.62
KOG3923|consensus	342		85.62
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	85.47
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	85.39
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	85.17
KOG2495|consensus	491		85.0
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	84.98
KOG2304|consensus	298		84.93
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	84.62
PRK08017	256	oxidoreductase; Provisional	84.37
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	84.27
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	84.19
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	84.16
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	84.07
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	83.62
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	83.56
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	83.5
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	83.38
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	83.19
PRK06223	307	malate dehydrogenase; Reviewed	83.13
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	83.06
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	82.66
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	82.66
PRK08306	296	dipicolinate synthase subunit A; Reviewed	82.51
PLN02353	473	probable UDP-glucose 6-dehydrogenase	82.44
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	82.44
PRK12814	652	putative NADPH-dependent glutamate synthase small	82.19
PTZ00082	321	L-lactate dehydrogenase; Provisional	82.11
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	82.02
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	82.01
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	82.0
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	81.84
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	81.73
KOG1336|consensus	478		81.73
PRK07774	250	short chain dehydrogenase; Provisional	81.71
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	81.69
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	81.61
PRK07326	237	short chain dehydrogenase; Provisional	81.58
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	81.54
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	81.45
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	81.43
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	81.16
COG0281	432	SfcA Malic enzyme [Energy production and conversio	80.91
PRK12779	944	putative bifunctional glutamate synthase subunit b	80.83
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	80.77
PLN02572	442	UDP-sulfoquinovose synthase	80.72
PRK06057	255	short chain dehydrogenase; Provisional	80.72
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	80.69
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	80.61
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	80.54
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	80.5
PRK10537	393	voltage-gated potassium channel; Provisional	80.45
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	80.32
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.27
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	80.17
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.13
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	80.07
PRK12548	289	shikimate 5-dehydrogenase; Provisional	80.06

>KOG1238|consensus

Probab=99.94  E-value=6.3e-27  Score=196.96  Aligned_cols=111  Identities=40%  Similarity=0.710  Sum_probs=101.8

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcchhhhcccCccccccccCCCccccccCCCCeee
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNH  105 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~  105 (146)
                      ....|||||||+|.|||++|.+|+|.+..+|||||+|+.+....++|.....+.....+|.|.++|++..|+.+.++.++
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~  133 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCY  133 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCcee
Confidence            45689999999999999999999998899999999999998788888666666778999999999999999999999999


Q ss_pred             eccccEEeccccc-cceecCCChhhhhhhhHH
Q psy3408         106 WPRGKGLGGFPAT-GLIYSNHVKTGRIELNLI  136 (146)
Q Consensus       106 ~~rG~~lGGsS~i-~~~~~R~~~~df~~~~~~  136 (146)
                      |||||+|||||.+ +|+|.|+++.|||+|..-
T Consensus       134 wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~  165 (623)
T KOG1238|consen  134 WPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAE  165 (623)
T ss_pred             cCccceecccccccceEEecCCccchHHHHHh
Confidence            9999999999999 999999999999776543

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.86  E-value=2.1e-22  Score=157.52  Aligned_cols=101  Identities=40%  Similarity=0.692  Sum_probs=73.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcc-hhhhcccCccccccccCCCccccccCCCCeeeecc
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPG-YWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPR  108 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~-~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~r  108 (146)
                      |||||||+|++|+++|.+|+++++++|||||+|+........+. ..........+|.+.+.|+.    ...++.+.+++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   76 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP----FLNGRTINWPR   76 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE----CTTTTSEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc----ccccceeeeec
Confidence            89999999999999999999975579999999988654332111 12222345677888887776    56778889999


Q ss_pred             ccEEeccccc-cceecCCChhhhhhhh
Q psy3408         109 GKGLGGFPAT-GLIYSNHVKTGRIELN  134 (146)
Q Consensus       109 G~~lGGsS~i-~~~~~R~~~~df~~~~  134 (146)
                      |++|||||.| +|++.|+++.||++|.
T Consensus        77 G~~lGGsS~in~~~~~R~~~~df~~w~  103 (296)
T PF00732_consen   77 GKGLGGSSAINGGVYFRPSPSDFDEWA  103 (296)
T ss_dssp             B-STTGGGGTS--BE-B--HHHHHHHH
T ss_pred             ceecCCcccccccccccCCcccchhhh
Confidence            9999999999 9999999999997754

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK02106 choline dehydrogenase; Validated

Probab=99.85  E-value=3.1e-21  Score=163.57  Aligned_cols=103  Identities=41%  Similarity=0.636  Sum_probs=83.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC---CCCccCcchhhhc-ccCccccccccCCCccccccCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEASELPGYWFNL-LKSRQDWAYRTQPDNRMFFGLENR  102 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~---~~~~~~p~~~~~~-~~~~~~w~~~~~p~~~~~~~~~~~  102 (146)
                      ..+|||||||+|++|+++|.+|++.++++|||||+|+..   ....+.|...... ....++|.|.+.|++    ...++
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~----~~~~~   78 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP----HMNNR   78 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC----CCCCC
Confidence            357999999999999999999999559999999999653   2334455533222 234568999888887    45667


Q ss_pred             eeeeccccEEeccccc-cceecCCChhhhhhh
Q psy3408         103 VNHWPRGKGLGGFPAT-GLIYSNHVKTGRIEL  133 (146)
Q Consensus       103 ~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~  133 (146)
                      .+.+++|++|||||.| +|+|+|+.+.||+.|
T Consensus        79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w  110 (560)
T PRK02106         79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNW  110 (560)
T ss_pred             eeecccccccCCCCCccceEEecCCHHHHHHH
Confidence            8899999999999999 999999999999665

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=99.83  E-value=1.1e-20  Score=159.95  Aligned_cols=103  Identities=39%  Similarity=0.714  Sum_probs=88.0

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC-CccCcchhhhcccC-ccccccccCCCccccccCCCCe
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-ASELPGYWFNLLKS-RQDWAYRTQPDNRMFFGLENRV  103 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~p~~~~~~~~~~~~  103 (146)
                      ...+||+||||+|.+|+++|.+|++ ++++|+|||+|+.... ...+|..+...... ..+|.|.++|++    ...++.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~   78 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRE   78 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCcc
Confidence            4568999999999999999999995 6999999999976432 45666655555443 788999999988    678889


Q ss_pred             eeeccccEEeccccc-cceecCCChhhhhhh
Q psy3408         104 NHWPRGKGLGGFPAT-GLIYSNHVKTGRIEL  133 (146)
Q Consensus       104 ~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~  133 (146)
                      +.++||++|||+|.| +|+|+|+++.||+.|
T Consensus        79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w  109 (542)
T COG2303          79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAW  109 (542)
T ss_pred             ccccccCcccchhhhccceeecCCHHHHHHH
Confidence            999999999999999 999999999999554

>TIGR01810 betA choline dehydrogenase

Probab=99.82  E-value=1.8e-20  Score=158.03  Aligned_cols=99  Identities=39%  Similarity=0.626  Sum_probs=80.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC---CCccCcchhhhc-ccCccccccccCCCccccccCCCCeeee
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP---EASELPGYWFNL-LKSRQDWAYRTQPDNRMFFGLENRVNHW  106 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~---~~~~~p~~~~~~-~~~~~~w~~~~~p~~~~~~~~~~~~~~~  106 (146)
                      ||||||+|.+|+++|.+|+++++.+|||||+|+...   .....|...... ....++|.|.+.|++    ...++.+.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~   76 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP----HMNNRRVGH   76 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC----CCCCceEee
Confidence            899999999999999999997447999999997532   234455432222 234568999999988    566788999


Q ss_pred             ccccEEeccccc-cceecCCChhhhhhh
Q psy3408         107 PRGKGLGGFPAT-GLIYSNHVKTGRIEL  133 (146)
Q Consensus       107 ~rG~~lGGsS~i-~~~~~R~~~~df~~~  133 (146)
                      ++|++|||||.| +|+|.|+++.||+.|
T Consensus        77 ~~g~~lGGss~in~~~~~R~~~~d~~~w  104 (532)
T TIGR01810        77 ARGKVLGGSSSINGMIYQRGNPMDYEKW  104 (532)
T ss_pred             ecccccCCCCCEeeeEEecCCHHHHHHH
Confidence            999999999999 999999999999665

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PLN02785 Protein HOTHEAD

Probab=99.79  E-value=2.9e-19  Score=152.44  Aligned_cols=99  Identities=27%  Similarity=0.341  Sum_probs=78.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcchhhhcccCccccccccCCCccccccCCCCeeee
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHW  106 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~  106 (146)
                      ...|||||||+|.+|+++|.+|++  +.+|||||+|+.+.....+.. ...+.....+|.|.+.||.    ...++.+.+
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~-~~~~~~~~~d~~~~~~~q~----~~~~~~~~~  125 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSF-LENFHIGLADTSPTSASQA----FISTDGVIN  125 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhh-HHhhCCcccccCCcccccc----ccCCCceec
Confidence            447999999999999999999999  589999999975321111111 1112234568999988886    455678899


Q ss_pred             ccccEEeccccc-cceecCCChhhhhh
Q psy3408         107 PRGKGLGGFPAT-GLIYSNHVKTGRIE  132 (146)
Q Consensus       107 ~rG~~lGGsS~i-~~~~~R~~~~df~~  132 (146)
                      +|||+|||||.+ +|+|.|++++||++
T Consensus       126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~  152 (587)
T PLN02785        126 ARARVLGGGTCINAGFYSRASTRFIQK  152 (587)
T ss_pred             cccceecchhhhcCeEEEeCCHHHhcc
Confidence            999999999999 99999999999976

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.95  E-value=2.5e-09  Score=90.97  Aligned_cols=36  Identities=25%  Similarity=0.515  Sum_probs=33.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ||+||||+|++|+++|..|+++ |++|+|||++...+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccC
Confidence            6999999999999999999996 99999999987653

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.85  E-value=2.6e-09  Score=86.92  Aligned_cols=86  Identities=24%  Similarity=0.288  Sum_probs=58.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcchhhhcccCccccccccCCCccccccCCCCeeee
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHW  106 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~  106 (146)
                      ++.+|+||||+|++|+++|..+++. |++|+|||+++..+....+.+....+..+...      |+.+.           
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~------~~~~l-----------   62 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA------PDEFL-----------   62 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccceeEecCCCCcccccccc------HHHHH-----------
Confidence            3578999999999999999999996 99999999999877555555544443322111      11100           


Q ss_pred             ccccEEeccccc-cceecCCChhhhhhh
Q psy3408         107 PRGKGLGGFPAT-GLIYSNHVKTGRIEL  133 (146)
Q Consensus       107 ~rG~~lGGsS~i-~~~~~R~~~~df~~~  133 (146)
                         ..-+|.+.. ...+-|+.++||..|
T Consensus        63 ---s~~p~~~~fl~sal~~ft~~d~i~~   87 (408)
T COG2081          63 ---SRNPGNGHFLKSALARFTPEDFIDW   87 (408)
T ss_pred             ---HhCCCcchHHHHHHHhCCHHHHHHH
Confidence               001244444 666778888888665

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.75  E-value=1.2e-08  Score=83.53  Aligned_cols=38  Identities=39%  Similarity=0.735  Sum_probs=35.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +.||++|||+|+||+++|+.|+++ |.+|+|||+++.++
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G   39 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPG   39 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence            579999999999999999999997 89999999998875

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.66  E-value=3.6e-08  Score=80.43  Aligned_cols=48  Identities=35%  Similarity=0.462  Sum_probs=41.6

Q ss_pred             hhccccccccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          17 TVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        17 ~~~~~~~~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +.+++.+......+|++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus         6 ~~~~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~   53 (415)
T PRK07364          6 ATSPTLPSTRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPAE   53 (415)
T ss_pred             cCCCCCCCCCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCcc
Confidence            35556677777789999999999999999999996 9999999998764

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.63  E-value=4.5e-08  Score=80.97  Aligned_cols=38  Identities=47%  Similarity=0.611  Sum_probs=34.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +.||+||||+|++|+++|+.|+++ |++|+|||+++.+.
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~~g   41 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSAG   41 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCCCC
Confidence            469999999999999999999996 99999999987653

>PRK10015 oxidoreductase; Provisional

Probab=98.62  E-value=5.3e-08  Score=80.62  Aligned_cols=37  Identities=43%  Similarity=0.655  Sum_probs=34.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+||+||||+|++|+++|+.|+++ |.+|+|||+++.+
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~~   40 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSA   40 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence            469999999999999999999996 9999999998765

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.61  E-value=4e-08  Score=81.94  Aligned_cols=39  Identities=33%  Similarity=0.470  Sum_probs=34.9

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...+.||++|||+|++|+++|..|+++ |++|+|||+...
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~~   73 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKLD   73 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCC
Confidence            345689999999999999999999996 999999999754

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.57  E-value=7.1e-08  Score=76.79  Aligned_cols=60  Identities=28%  Similarity=0.504  Sum_probs=45.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC----------CccCcchhhhcc--cCcccccccc
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE----------ASELPGYWFNLL--KSRQDWAYRT   89 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~----------~~~~p~~~~~~~--~~~~~w~~~~   89 (146)
                      .||++|||+|.+|+++|..+++. |++|||||+.+..+.          ...+..+.++++  .++..|.|.+
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~   72 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVN   72 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHh
Confidence            37999999999999999988886 999999999887642          234444555554  3456677754

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.55  E-value=1.2e-07  Score=71.86  Aligned_cols=38  Identities=34%  Similarity=0.471  Sum_probs=31.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .++|++|||+|++|+++|+.|+++ |.||+++|+...++
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~~G   53 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLSPG   53 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS-B
T ss_pred             ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            479999999999999999999997 99999999986653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.50  E-value=1.5e-07  Score=74.03  Aligned_cols=36  Identities=39%  Similarity=0.578  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++|++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccc
Confidence            48999999999999999999997 9999999998765

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.48  E-value=2e-07  Score=71.92  Aligned_cols=35  Identities=46%  Similarity=0.775  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ||++|||+|++|+++|.+|++. |.+|+|||+.+..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~~   35 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSFP   35 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            7999999999999999999996 9999999998754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.47  E-value=2.4e-07  Score=72.00  Aligned_cols=37  Identities=30%  Similarity=0.401  Sum_probs=34.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|+.|+++ |.+|+|||+....
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~~   56 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAF   56 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            378999999999999999999996 9999999998765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.47  E-value=2.9e-07  Score=57.59  Aligned_cols=32  Identities=28%  Similarity=0.451  Sum_probs=29.1

Q ss_pred             EECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        34 IIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      |||+|++|+.+|+.|+++ +++|+|+|+.+..+
T Consensus         1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence            899999999999999997 99999999998765

...

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.47  E-value=1.8e-07  Score=77.23  Aligned_cols=36  Identities=39%  Similarity=0.612  Sum_probs=27.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ||++|||+|++|+++|..+++. |.+|+|||+++..+
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~-g~~V~vlE~~~~~g   36 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEK-GARVLVLERNKRVG   36 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS-
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCcccc
Confidence            7999999999999999999996 99999999998764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.46  E-value=2.1e-07  Score=78.24  Aligned_cols=38  Identities=21%  Similarity=0.405  Sum_probs=34.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +.+|+||||+|.+|+++|..|+++ |++|+|+||....+
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~G   39 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVG   39 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCC
Confidence            468999999999999999999997 99999999887654

>PRK09126 hypothetical protein; Provisional

Probab=98.46  E-value=2.2e-07  Score=75.24  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=33.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +++|++|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence            479999999999999999999996 999999999875

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.45  E-value=2.2e-07  Score=75.62  Aligned_cols=32  Identities=31%  Similarity=0.675  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ||++|||+|++|+++|..|+++ |.+|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA-GIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            7999999999999999999996 9999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.44  E-value=3.3e-07  Score=71.28  Aligned_cols=37  Identities=27%  Similarity=0.312  Sum_probs=33.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+.+|++|++. |++|+|||+....
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~~   60 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSF   60 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence            378999999999999999999995 9999999998664

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.41  E-value=3.4e-07  Score=73.60  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +++|++|||+|..|+++|++|++. |++|+|||++..
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence            468999999999999999999997 999999999854

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.41  E-value=3.8e-07  Score=73.70  Aligned_cols=38  Identities=42%  Similarity=0.670  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++.+|++|||+|++|+++|..|++. |.+|+|+|+++..
T Consensus         3 ~~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~   40 (388)
T PRK07608          3 HMKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPP   40 (388)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCc
Confidence            4578999999999999999999996 9999999998764

>PRK08013 oxidoreductase; Provisional

Probab=98.40  E-value=4e-07  Score=74.40  Aligned_cols=37  Identities=30%  Similarity=0.443  Sum_probs=34.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +++|++|||+|++|+++|..|+++ |++|+|||+.+..
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~~   38 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVPE   38 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCCc
Confidence            468999999999999999999996 9999999998763

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.37  E-value=4.7e-07  Score=74.91  Aligned_cols=36  Identities=42%  Similarity=0.719  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++||+||||+|++|+.+|.+|++. |++|+|+|+++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~   37 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNA   37 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCC
Confidence            479999999999999999999996 999999999753

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.37  E-value=1.3e-06  Score=73.78  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++||||||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~-Ga~VivlEK~~~~   96 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDA-GMNPVILEKMPVA   96 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCC
Confidence            478999999999999999999996 9999999998764

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.36  E-value=4.8e-07  Score=75.44  Aligned_cols=39  Identities=23%  Similarity=0.330  Sum_probs=36.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +++||+||||+|.+|+++|..|+++ |+||++||+.+..+
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yG   40 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYG   40 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcC
Confidence            5689999999999999999999996 99999999998775

>PRK07045 putative monooxygenase; Reviewed

Probab=98.35  E-value=6.3e-07  Score=72.72  Aligned_cols=37  Identities=30%  Similarity=0.446  Sum_probs=34.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+++|..|+++ |.+|+|+|+.+..
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcc
Confidence            568999999999999999999996 9999999998765

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.35  E-value=6.4e-07  Score=74.55  Aligned_cols=37  Identities=32%  Similarity=0.463  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..++|+||||+|.+|+.+|.+++++ |.+|+|||+.+.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~-G~~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            3578999999999999999999996 999999999863

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.34  E-value=5.2e-07  Score=73.10  Aligned_cols=37  Identities=35%  Similarity=0.541  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.||++|||+|++|+++|..|+++ |++|+|||+.+.
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~   39 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAP   39 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCCC
Confidence            3579999999999999999999996 999999999753

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.34  E-value=6.3e-07  Score=75.79  Aligned_cols=37  Identities=30%  Similarity=0.505  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++.||+||||+|..|+.+|.+|+++ |.+|+|||+++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~   40 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDL   40 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            4579999999999999999999996 999999999854

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.34  E-value=6.3e-07  Score=74.12  Aligned_cols=36  Identities=33%  Similarity=0.554  Sum_probs=33.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++||++|||+|++|..+|.+|++. |++|+|+|+++.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~   37 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKA   37 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCc
Confidence            479999999999999999999996 999999999863

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.34  E-value=6.6e-07  Score=75.45  Aligned_cols=37  Identities=30%  Similarity=0.529  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+||++|||+|..|+.+|++|+++ |.+|+|||+++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d~   40 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDDL   40 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence            4579999999999999999999997 999999999954

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.34  E-value=6.7e-07  Score=72.65  Aligned_cols=37  Identities=35%  Similarity=0.504  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...+|++|||+|++|+++|..|+++ |.+|+|||+.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence            3578999999999999999999997 999999999864

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.34  E-value=6.2e-07  Score=70.57  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      |++|||+|.+|+++|++|+++ |++|+|||++..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~~~   33 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERGDI   33 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHT-TSEEEEEESSST
T ss_pred             CEEEECcCHHHHHHHHHHHHC-CCeEEEEeeccc
Confidence            899999999999999999996 999999999933

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.34  E-value=6.8e-07  Score=72.36  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++.+|+||||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~~   42 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPPY   42 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCCC
Confidence            3468999999999999999999996 9999999998653

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.34  E-value=6.3e-07  Score=73.46  Aligned_cols=34  Identities=35%  Similarity=0.578  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +|++|||+|++|+++|..|+++ |++|+|||+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCCC
Confidence            6999999999999999999996 999999999754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.33  E-value=6.5e-07  Score=72.05  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ||++|||+|..|+++|++|+++ |++|+|||++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            6999999999999999999996 999999999754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.33  E-value=7.4e-07  Score=67.86  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .+.|++|||+|++|+++|++|+++ |.||+|+|+.-..+
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ls~G   66 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFG   66 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhC-CceEEEEEeecccC
Confidence            367999999999999999999996 99999999976543

>PRK06116 glutathione reductase; Validated

Probab=98.32  E-value=7.6e-07  Score=73.87  Aligned_cols=34  Identities=44%  Similarity=0.668  Sum_probs=32.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+||++|||+|++|..+|.+|++. |++|+|+|++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            479999999999999999999996 9999999996

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.32  E-value=8e-07  Score=72.20  Aligned_cols=34  Identities=38%  Similarity=0.653  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+|++|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence            58999999999999999999996 99999999875

>PRK06370 mercuric reductase; Validated

Probab=98.32  E-value=7.9e-07  Score=74.05  Aligned_cols=37  Identities=38%  Similarity=0.561  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +.+||++|||+|++|..+|.++++. |++|+|+|++..
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~~   39 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGLL   39 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCcc
Confidence            4579999999999999999999996 999999998643

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.31  E-value=6.6e-07  Score=72.96  Aligned_cols=34  Identities=38%  Similarity=0.648  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ++|++|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence            68999999999999999999996 99999999986

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.30  E-value=8.4e-07  Score=71.27  Aligned_cols=34  Identities=41%  Similarity=0.620  Sum_probs=32.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      |++|||+|++|+++|..|+++ |.+|+|+|+.+.+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCcc
Confidence            799999999999999999997 9999999999764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.30  E-value=8.1e-07  Score=73.97  Aligned_cols=35  Identities=37%  Similarity=0.716  Sum_probs=32.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+||++|||+|++|..+|.++++. |++|+|+|++.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence            369999999999999999999996 99999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.29  E-value=9.1e-07  Score=72.35  Aligned_cols=34  Identities=38%  Similarity=0.602  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      |+||||+|.+|+.+|.+++++ |.+|+|||+++..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~-G~~V~lvek~~~~   34 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEA-GAKVLLVEKGPRL   34 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHT-TT-EEEEESSSGG
T ss_pred             CEEEECCCHHHHHHHHHHhhh-cCeEEEEEeeccc
Confidence            899999999999999999996 9999999999873

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.29  E-value=8.7e-07  Score=73.38  Aligned_cols=35  Identities=43%  Similarity=0.615  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      |+||||+|++|+.+|..+++. |.+|+|||+.+..+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~-G~~VlLiE~~~~lG   35 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARA-GAKVLLIEKGGFLG   35 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-TS-EEEE-SSSSST
T ss_pred             CEEEECccHHHHHHHHHHHHC-CCEEEEEECCccCC
Confidence            899999999999999999996 99999999998753

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.29  E-value=9.9e-07  Score=73.72  Aligned_cols=34  Identities=29%  Similarity=0.528  Sum_probs=31.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+||++|||+|++|..+|.++++. |++|+|+|+.
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~   35 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR   35 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            469999999999999999999996 9999999974

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.29  E-value=1.5e-06  Score=70.94  Aligned_cols=39  Identities=36%  Similarity=0.501  Sum_probs=33.5

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGG   63 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~   63 (146)
                      ..+.++|++|||+|..|+++|++|+++.| ++|+|||++.
T Consensus        26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            34568999999999999999999998426 5999999974

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN02985 squalene monooxygenase

Probab=98.28  E-value=1.3e-06  Score=74.09  Aligned_cols=41  Identities=39%  Similarity=0.558  Sum_probs=36.0

Q ss_pred             ccccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          23 EDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        23 ~~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +...+..+|++|||+|++|+++|..|+++ |++|+|||+...
T Consensus        37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~~   77 (514)
T PLN02985         37 EERKDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLR   77 (514)
T ss_pred             ccCcCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcCC
Confidence            34456689999999999999999999997 999999999754

>TIGR02730 carot_isom carotene isomerase

Probab=98.28  E-value=1.1e-06  Score=73.75  Aligned_cols=36  Identities=33%  Similarity=0.504  Sum_probs=33.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ||+||||+|.+|+++|..|+++ |++|+||||.+.++
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~G   36 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVK-GAKVLVLERYLIPG   36 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHC-CCcEEEEECCCCCC
Confidence            6999999999999999999996 99999999987764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.28  E-value=1e-06  Score=71.94  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +|++|||+|..|+.+|++|++. |++|+|||+++.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            5999999999999999999996 999999999864

>PRK06185 hypothetical protein; Provisional

Probab=98.27  E-value=1.1e-06  Score=71.58  Aligned_cols=37  Identities=35%  Similarity=0.470  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+++|++|||+|++|+++|..|+++ |++|+|||+.+.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence            3579999999999999999999996 999999999764

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.27  E-value=1.1e-06  Score=70.51  Aligned_cols=34  Identities=32%  Similarity=0.483  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +|++|||+|..|+++|++|++. |++|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            6999999999999999999996 999999999764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08244 hypothetical protein; Provisional

Probab=98.27  E-value=1.3e-06  Score=73.32  Aligned_cols=36  Identities=33%  Similarity=0.596  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++||+|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            58999999999999999999996 9999999998654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.27  E-value=1e-06  Score=73.17  Aligned_cols=33  Identities=24%  Similarity=0.471  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +||++|||+|++|..+|.++++. |++|+|+|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence            69999999999999999999996 9999999995

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.26  E-value=1.3e-06  Score=72.57  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..||++|||+|++|..+|.+|++. |++|+|+|+++..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~   40 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNV   40 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccc
Confidence            469999999999999999999996 9999999997543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.26  E-value=1.2e-06  Score=73.09  Aligned_cols=36  Identities=33%  Similarity=0.645  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ...||++|||+|++|..+|.+|++. |++|+|+|++.
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~   37 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK   37 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence            3579999999999999999999996 99999999963

>PRK06184 hypothetical protein; Provisional

Probab=98.26  E-value=1.4e-06  Score=73.24  Aligned_cols=37  Identities=35%  Similarity=0.518  Sum_probs=34.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++||+|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            468999999999999999999997 9999999998654

>PRK07208 hypothetical protein; Provisional

Probab=98.26  E-value=1.8e-06  Score=71.95  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=35.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ++..|++|||+|++|+++|++|+++ |++|+|+|+.+..+
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~G   40 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVG   40 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence            4578999999999999999999997 99999999987754

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.24  E-value=1.8e-06  Score=71.99  Aligned_cols=38  Identities=32%  Similarity=0.351  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      +.++|++|||+|..|+++|++|+++ +|.+|+|||++..
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            4468999999999999999999995 4899999999753

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.24  E-value=1.5e-06  Score=67.41  Aligned_cols=33  Identities=33%  Similarity=0.552  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ||++|||+|++|+.+|..|++. |++|+|+|+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence            6999999999999999999996 99999999875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.24  E-value=1.5e-06  Score=72.30  Aligned_cols=35  Identities=29%  Similarity=0.495  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+||++|||+|++|..+|.++++. |++|+|+|++.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence            479999999999999999999996 99999999975

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.24  E-value=1.5e-06  Score=70.39  Aligned_cols=34  Identities=38%  Similarity=0.582  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      |+||||+|++|+.+|..|++. |.+|+|||+.+..
T Consensus         1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~~   34 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPPI   34 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCC
Confidence            899999999999999999986 9999999998654

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.24  E-value=1.5e-06  Score=72.12  Aligned_cols=34  Identities=44%  Similarity=0.692  Sum_probs=31.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+||+||||+|++|..+|.+|++. |++|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            469999999999999999999996 9999999994

>PRK07121 hypothetical protein; Validated

Probab=98.23  E-value=1.7e-06  Score=72.73  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++||||||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~-G~~VillEK~~~~   55 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAA-GARVLVLERAAGA   55 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            479999999999999999999996 9999999998764

>PLN02676 polyamine oxidase

Probab=98.23  E-value=3.2e-06  Score=71.20  Aligned_cols=38  Identities=34%  Similarity=0.420  Sum_probs=34.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~~   66 (146)
                      ..+|++|||+|++|+.+|++|+++ |. +|+|||+.+..+
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~G   63 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIG   63 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCC
Confidence            478999999999999999999996 87 699999988764

>PLN02463 lycopene beta cyclase

Probab=98.23  E-value=1.5e-06  Score=72.48  Aligned_cols=37  Identities=35%  Similarity=0.536  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...||++|||+|++|+.+|.+|+++ |.+|+|||+.+.
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~   62 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPL   62 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCcc
Confidence            3478999999999999999999996 999999999754

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.22  E-value=1.9e-06  Score=70.23  Aligned_cols=37  Identities=35%  Similarity=0.654  Sum_probs=33.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .+|++|||+|..|+++|++|+++ +|++|+|||++...
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~   39 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP   39 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence            58999999999999999999983 48999999998643

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.22  E-value=1.6e-06  Score=69.97  Aligned_cols=34  Identities=47%  Similarity=0.612  Sum_probs=31.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~   65 (146)
                      |++|||+|++|+++|..|+++ | ++|+|+|+.+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCcc
Confidence            899999999999999999997 9 999999998764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>KOG0029|consensus

Probab=98.21  E-value=2e-06  Score=72.71  Aligned_cols=41  Identities=29%  Similarity=0.418  Sum_probs=36.7

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ......+|||||||.+|+++|..|.+. |.+|+|||+.++.+
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVG   51 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcC
Confidence            344578999999999999999999996 99999999988864

>PRK07190 hypothetical protein; Provisional

Probab=98.21  E-value=1.9e-06  Score=72.56  Aligned_cols=37  Identities=19%  Similarity=0.330  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+++|..|+++ |.+|+|||+.+.+
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~   40 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGP   40 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcc
Confidence            468999999999999999999996 9999999998754

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.21  E-value=1.6e-06  Score=70.45  Aligned_cols=36  Identities=31%  Similarity=0.500  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhC-CCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G~~   64 (146)
                      .||++|||+|++|+++|..|+++. |.+|+|+|+.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            379999999999999999999962 499999999865

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.21  E-value=1.6e-06  Score=70.80  Aligned_cols=34  Identities=41%  Similarity=0.659  Sum_probs=31.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +.+|++|||+|++|+++|..|+++ |++|+|+|+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~   36 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ   36 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            468999999999999999999996 9999999996

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.21  E-value=1.8e-06  Score=73.60  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..||++|||+|..|+.+|++|+++ |.+|+|||+++.
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~r-G~~V~LlEk~d~   40 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALR-GLRCILVERHDI   40 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCC
Confidence            369999999999999999999996 999999999753

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.20  E-value=1.9e-06  Score=70.14  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+|++|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCc
Confidence            68999999999999999999996 999999999875

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.20  E-value=1.7e-06  Score=71.58  Aligned_cols=33  Identities=48%  Similarity=0.837  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHH----hCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSE----ELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~----~~g~~VlvLE~G~   63 (146)
                      ||++|||+|++|+++|..|++    + |.+|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence            799999999999999999998    5 99999999954

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.20  E-value=2.1e-06  Score=71.65  Aligned_cols=35  Identities=23%  Similarity=0.435  Sum_probs=32.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+||++|||+|++|..+|.++++. |++|+|+|++.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~   37 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY   37 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence            369999999999999999999996 99999999863

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.20  E-value=1.9e-06  Score=74.24  Aligned_cols=36  Identities=31%  Similarity=0.458  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.+|||||||+|+||+.+|..+++. |.+|+|||+..
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~   37 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL   37 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence            3479999999999999999999996 99999999974

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.20  E-value=1.9e-06  Score=69.65  Aligned_cols=35  Identities=54%  Similarity=0.595  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh--CCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G   62 (146)
                      ..+|++|||+|++|+++|..|+++  .|.+|+|+|+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            578999999999999999999883  29999999995

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.19  E-value=2.1e-06  Score=73.29  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +.||++|||||+||+.+|..|++. +++|+|+|++..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~~   38 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDDF   38 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            469999999999999999999996 999999999753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.19  E-value=2.4e-06  Score=71.53  Aligned_cols=37  Identities=22%  Similarity=0.257  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..||+||||+|++|..+|.++++. |++|+|+|+.+..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~~   39 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYSTL   39 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCcc
Confidence            479999999999999999999996 9999999986433

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.19  E-value=2.1e-06  Score=70.04  Aligned_cols=35  Identities=23%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+|++|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            57999999999999999999996 999999999875

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.19  E-value=2.2e-06  Score=71.17  Aligned_cols=32  Identities=34%  Similarity=0.665  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      .||+||||+|++|+.+|.+|++. |++|+|+|+
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~   32 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK   32 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence            48999999999999999999996 999999999

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.19  E-value=1.8e-06  Score=70.30  Aligned_cols=34  Identities=50%  Similarity=0.732  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHH--HHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRL--SEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L--~~~~g~~VlvLE~G~~~   65 (146)
                      |+||||+|+||+++|.+|  ++ ++++|+|||+....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCccc
Confidence            899999999999999999  66 59999999998765

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.19  E-value=2.4e-06  Score=69.90  Aligned_cols=36  Identities=47%  Similarity=0.708  Sum_probs=32.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +|++|||+|++|+++|.+|++. |.+|+|||+.+..+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence            6999999999999999999986 99999999976554

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG1298|consensus

Probab=98.19  E-value=1.9e-06  Score=70.41  Aligned_cols=39  Identities=41%  Similarity=0.542  Sum_probs=34.8

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ....+|+||||+|.+|+.+|+.|+++ |+||.||||.-..
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~E   80 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSE   80 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhC-CcEEEEEeccccc
Confidence            34578999999999999999999997 9999999997543

>PRK06847 hypothetical protein; Provisional

Probab=98.18  E-value=2.7e-06  Score=68.46  Aligned_cols=37  Identities=30%  Similarity=0.311  Sum_probs=33.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +..|++|||+|++|+++|..|++. |.+|+|+|+.+..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~~   39 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPEW   39 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCC
Confidence            467999999999999999999996 9999999998653

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.18  E-value=2.1e-06  Score=74.41  Aligned_cols=36  Identities=33%  Similarity=0.473  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +.||+||||+|..|+.+|++|+++ |.+|+|||+++.
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~r-Gl~V~LvE~~d~  105 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATR-GLRVGLVEREDF  105 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecccc
Confidence            459999999999999999999996 999999999854

>TIGR02053 MerA mercuric reductase

Probab=98.18  E-value=2.2e-06  Score=71.39  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ||+||||+|++|..+|.++++. |++|+|+|++..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~~   34 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGPL   34 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCcc
Confidence            7999999999999999999996 999999999653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.18  E-value=2e-06  Score=70.05  Aligned_cols=33  Identities=39%  Similarity=0.544  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+|++|||+|++|+++|..|+++ |++|.|||+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence            57999999999999999999997 9999999998

>PRK06834 hypothetical protein; Provisional

Probab=98.17  E-value=2.7e-06  Score=71.64  Aligned_cols=36  Identities=28%  Similarity=0.484  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+|++|||+|++|+++|..|+++ |.+|+|||+.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            368999999999999999999996 999999999765

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.17  E-value=2.7e-06  Score=71.29  Aligned_cols=36  Identities=31%  Similarity=0.556  Sum_probs=33.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -|+||||+|.+|+++|..|+++ |++|+|+|+.+..+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~G   37 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPG   37 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            5899999999999999999996 99999999987764

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.16  E-value=3.5e-06  Score=71.52  Aligned_cols=38  Identities=37%  Similarity=0.471  Sum_probs=35.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+|++|||+|++|+++|..|++. |.+|+|||+.+..
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~~   45 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPTL   45 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            5689999999999999999999996 9999999998754

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.16  E-value=2.9e-06  Score=71.85  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +.++|+||||+| +|+.+|.++++. |.+|+|||+.+..
T Consensus         5 d~~~DVvVVG~G-aGl~aA~~aa~~-G~~V~vlEk~~~~   41 (513)
T PRK12837          5 DEEVDVLVAGSG-GGVAGAYTAARE-GLSVALVEATDKF   41 (513)
T ss_pred             CCccCEEEECch-HHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            358899999999 999999999996 9999999998764

>PLN02268 probable polyamine oxidase

Probab=98.16  E-value=3e-06  Score=69.81  Aligned_cols=36  Identities=31%  Similarity=0.517  Sum_probs=33.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .++||||+|.+|+++|+.|.++ |++|+|||+.++.+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~G   36 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIG   36 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Confidence            3799999999999999999995 99999999998875

>PLN02661 Putative thiazole synthesis

Probab=98.15  E-value=2.9e-06  Score=68.85  Aligned_cols=37  Identities=41%  Similarity=0.560  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+|++|||+|++|+.+|+.|+++++.+|+|||++...
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~  128 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP  128 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            5799999999999999999998568999999997654

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.15  E-value=3e-06  Score=68.20  Aligned_cols=38  Identities=39%  Similarity=0.535  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +.++|++|||+|..|+++|+.|++. |.+|+|+|++...
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~   39 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG   39 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence            4578999999999999999999996 8999999998653

>PRK07236 hypothetical protein; Provisional

Probab=98.15  E-value=3.4e-06  Score=68.51  Aligned_cols=37  Identities=22%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++..|++|||+|++|+++|..|+++ |.+|+|+|+.+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            4568999999999999999999996 999999999864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=3e-06  Score=67.56  Aligned_cols=35  Identities=37%  Similarity=0.645  Sum_probs=31.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~   63 (146)
                      +.||++|||+||+|+.+|..+++. +.+ ++|+|++.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~~   37 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGGE   37 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence            579999999999999999999996 877 78888753

>PTZ00367 squalene epoxidase; Provisional

Probab=98.15  E-value=3e-06  Score=72.72  Aligned_cols=38  Identities=42%  Similarity=0.628  Sum_probs=34.3

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.+..+|+||||+|++|+++|..|+++ |++|+|+|+..
T Consensus        29 ~~~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~   66 (567)
T PTZ00367         29 RTNYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL   66 (567)
T ss_pred             ccccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence            344579999999999999999999996 99999999975

>PRK06753 hypothetical protein; Provisional

Probab=98.14  E-value=3.1e-06  Score=68.09  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=31.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      |++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcc
Confidence            799999999999999999996 9999999998764

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.14  E-value=3.6e-06  Score=71.72  Aligned_cols=39  Identities=26%  Similarity=0.327  Sum_probs=35.0

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -..++|+||||+|.+|+.+|.++++. |.+|+|||++...
T Consensus        13 ~~~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~~   51 (541)
T PRK07804         13 WRDAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAALD   51 (541)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCCC
Confidence            34579999999999999999999996 9999999998754

>PLN02576 protoporphyrinogen oxidase

Probab=98.14  E-value=4.1e-06  Score=70.09  Aligned_cols=40  Identities=28%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+|++|||+|.+|+++|++|+++.|++|+|+|+.+..+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            3467999999999999999999983279999999988764

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.13  E-value=3.6e-06  Score=69.16  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~~~   66 (146)
                      +++|||||.+|+++|+.|+++ |  ++|+|+|+.+..+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLG   38 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCc
Confidence            689999999999999999996 6  8999999987654

>PRK14694 putative mercuric reductase; Provisional

Probab=98.13  E-value=3.4e-06  Score=70.49  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+||++|||+|++|..+|.+|++. |++|+|+|++.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~   39 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT   39 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence            479999999999999999999996 99999999974

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.13  E-value=2.8e-06  Score=68.86  Aligned_cols=33  Identities=18%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +|++|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence            6999999999999999999996 99999999874

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.13  E-value=3.8e-06  Score=68.12  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...|++|||+|++|+++|..|+++ |.+|+|+|+.+..
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~~   39 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAEI   39 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCccc
Confidence            357999999999999999999996 9999999998654

>PRK07233 hypothetical protein; Provisional

Probab=98.13  E-value=3.8e-06  Score=68.53  Aligned_cols=35  Identities=37%  Similarity=0.506  Sum_probs=32.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +++|||+|.+|+++|+.|+++ |++|+|||+.+..+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~G   35 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLG   35 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCC
Confidence            589999999999999999997 99999999998764

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.13  E-value=4.5e-06  Score=70.96  Aligned_cols=38  Identities=24%  Similarity=0.465  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+||+|||+|++|+++|..|++. |.+|+|||+.+..
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~~   58 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDTL   58 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCC
Confidence            3678999999999999999999996 9999999998754

>PRK13748 putative mercuric reductase; Provisional

Probab=98.12  E-value=3.5e-06  Score=71.66  Aligned_cols=35  Identities=31%  Similarity=0.443  Sum_probs=32.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..||+||||+|++|..+|.+|++. |++|+|+|++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            469999999999999999999997 99999999973

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.12  E-value=3.8e-06  Score=71.62  Aligned_cols=35  Identities=40%  Similarity=0.567  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++||||||+|.+|+.+|.+++++ |.+|+|||+++
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            578999999999999999999996 99999999988

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.12  E-value=4.7e-06  Score=68.81  Aligned_cols=34  Identities=29%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~   65 (146)
                      ||||||+|.+|+.+|.+++++ | .+|+|||+.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~-G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKA-GAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHc-CCccEEEEecCCCC
Confidence            899999999999999999996 9 999999998764

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07588 hypothetical protein; Provisional

Probab=98.11  E-value=3.7e-06  Score=68.27  Aligned_cols=34  Identities=32%  Similarity=0.352  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      |++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCCc
Confidence            899999999999999999996 9999999998654

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.11  E-value=4.4e-06  Score=70.64  Aligned_cols=38  Identities=39%  Similarity=0.532  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      ++++|+||||||..|+++|++|++. ++++|+|||+.+.
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~   81 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD   81 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence            3579999999999999999999995 3479999999864

>PLN02697 lycopene epsilon cyclase

Probab=98.11  E-value=3.4e-06  Score=71.82  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +..||++|||+|++|+.+|.+|+++ |++|+|||++.
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~~  141 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDL  141 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCcc
Confidence            3469999999999999999999996 99999999863

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.11  E-value=3.9e-06  Score=70.93  Aligned_cols=39  Identities=28%  Similarity=0.515  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      ..++|++|||+|..|+++|++|++. ++++|+||||....
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~   42 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV   42 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence            3468999999999999999999984 58999999998653

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.11  E-value=3.8e-06  Score=70.76  Aligned_cols=35  Identities=31%  Similarity=0.500  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      +|++|||+|..|+++|++|++. ++++|+|||++..
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~   36 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA   36 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            6999999999999999999984 6999999999764

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK06996 hypothetical protein; Provisional

Probab=98.11  E-value=3.8e-06  Score=68.61  Aligned_cols=39  Identities=33%  Similarity=0.501  Sum_probs=33.1

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhC---CCcEEEEecCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEEL---DWRVLLIEAGGD   64 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~---g~~VlvLE~G~~   64 (146)
                      ..+.+|++|||+|++|+++|..|+++.   |++|+|+|+.+.
T Consensus         8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            345789999999999999999999962   257999999753

>PTZ00058 glutathione reductase; Provisional

Probab=98.10  E-value=3.9e-06  Score=71.92  Aligned_cols=36  Identities=33%  Similarity=0.563  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+||+||||+|++|..+|.++++. |++|+|||++.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~   81 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY   81 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence            3579999999999999999999996 99999999863

>PRK06126 hypothetical protein; Provisional

Probab=98.10  E-value=4.8e-06  Score=70.66  Aligned_cols=38  Identities=29%  Similarity=0.465  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+||+|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~~   42 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDGT   42 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            3468999999999999999999997 9999999998653

>PLN02507 glutathione reductase

Probab=98.09  E-value=4.4e-06  Score=70.53  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      +.+||+||||+|++|..+|.++++. |++|+|+|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            4579999999999999999999996 999999996

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.08  E-value=4.2e-06  Score=70.24  Aligned_cols=34  Identities=29%  Similarity=0.498  Sum_probs=31.6

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +||||+|.+|+++|..|+++ |++|+|||+.+..+
T Consensus         1 vvVIGaG~~GL~aA~~La~~-G~~V~VlE~~~~~G   34 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAA-GIPVTVVEQRDKPG   34 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhC-CCcEEEEECCCCCc
Confidence            58999999999999999996 99999999988764

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.08  E-value=4.6e-06  Score=69.86  Aligned_cols=33  Identities=36%  Similarity=0.592  Sum_probs=31.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      ..||+||||+|++|+.+|.++++. |++|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence            479999999999999999999996 999999998

>PRK11445 putative oxidoreductase; Provisional

Probab=98.08  E-value=4.8e-06  Score=67.06  Aligned_cols=34  Identities=32%  Similarity=0.533  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .||++|||+|++|+++|..|++ . .+|+|||+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence            3799999999999999999998 4 89999999864

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.07  E-value=5.2e-06  Score=71.42  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=34.9

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+.++|+||||+|.+|+.+|.+++++ |.+|+|||+++..
T Consensus         8 ~~~~~DVvVVG~G~AGl~AA~~aae~-G~~VivlEk~~~~   46 (584)
T PRK12835          8 FDREVDVLVVGSGGGGMTAALTAAAR-GLDTLVVEKSAHF   46 (584)
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEcCCCC
Confidence            34579999999999999999999996 9999999998754

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.06  E-value=5.6e-06  Score=67.45  Aligned_cols=35  Identities=51%  Similarity=0.783  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      |++|||+|++|+.+|.+|+++ +|++|+|||+++..
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~   36 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI   36 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            899999999999999999983 59999999998743

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.05  E-value=9e-06  Score=69.72  Aligned_cols=37  Identities=27%  Similarity=0.404  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +.++|+||||+| +|+.+|.+.+++ |.+|+|||+.+..
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~-G~~v~v~Ek~~~~   50 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHEL-GLSVLIVEKSSYV   50 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            559999999999 899999999996 9999999998654

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.05  E-value=6.7e-06  Score=70.50  Aligned_cols=37  Identities=19%  Similarity=0.241  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|+||||+|.+|+.+|.+++++ |.+|+|||+....
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~-G~~v~llEk~~~~   44 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKL-GLDVVVLEKEPVF   44 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            478999999999999999999996 9999999998754

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.05  E-value=6.2e-06  Score=68.25  Aligned_cols=38  Identities=32%  Similarity=0.461  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhC---CCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEEL---DWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~---g~~VlvLE~G~~~~   66 (146)
                      ..|++|||+|.+|+++|++|+++.   |++|+|+|+.+..+
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG   42 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence            368999999999999999999842   89999999988754

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.04  E-value=5.4e-06  Score=69.98  Aligned_cols=32  Identities=28%  Similarity=0.604  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      .||+||||+|++|..+|.++++. |++|+|||+
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~   36 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDY   36 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence            58999999999999999999996 999999996

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.04  E-value=8.5e-06  Score=68.29  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=35.5

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .....+++|||+|++|+.+|.+|.+. |++|+|+|+++..+
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vG   46 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVG   46 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence            34468999999999999999999996 99999999987654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.04  E-value=5.7e-06  Score=71.97  Aligned_cols=35  Identities=46%  Similarity=0.662  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+|++|||+|.+|+++|++|+++ |++|+|||++..
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~  294 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEA  294 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence            47999999999999999999997 999999999853

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.04  E-value=6.3e-06  Score=67.26  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      |++|||+|..|+++|.+|+++ |++|+|||++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~-g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQA-GHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCCc
Confidence            899999999999999999996 999999999854

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.03  E-value=8.6e-06  Score=70.52  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++||||||+|.||+.+|.+++++ |.+|+|||++...
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~lveK~~~~   64 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVEL-GYKTACISKLFPT   64 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHc-CCcEEEEeccCCC
Confidence            3578999999999999999999996 9999999998654

>PRK07538 hypothetical protein; Provisional

Probab=98.02  E-value=7.4e-06  Score=67.17  Aligned_cols=35  Identities=31%  Similarity=0.516  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .|++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCcc
Confidence            3899999999999999999996 9999999998653

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.01  E-value=7.4e-06  Score=70.53  Aligned_cols=37  Identities=30%  Similarity=0.295  Sum_probs=33.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+||||||+|.||+.+|.+++++ |.+|+|||++...
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~~   38 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPVK   38 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCCC
Confidence            356999999999999999999996 9999999987653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.01  E-value=8.9e-06  Score=59.87  Aligned_cols=33  Identities=33%  Similarity=0.572  Sum_probs=26.4

Q ss_pred             EEECCCHHHHHHHHHHHHhCCCc-EEEEecCCCCC
Q psy3408          33 IIVGGGSAGAVLANRLSEELDWR-VLLIEAGGDPP   66 (146)
Q Consensus        33 iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~~~~   66 (146)
                      +|||+|++|+.+|..|.+. |.+ |+|||+++..+
T Consensus         1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~G   34 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRPG   34 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT-T---EEEEESSSSST
T ss_pred             CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCC
Confidence            6999999999999999997 888 99999997754

...

>PRK14727 putative mercuric reductase; Provisional

Probab=98.00  E-value=1e-05  Score=67.91  Aligned_cols=38  Identities=29%  Similarity=0.331  Sum_probs=34.1

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ....||+||||+|++|..+|.+|++. |++|+|+|++..
T Consensus        13 ~~~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~   50 (479)
T PRK14727         13 SKLQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADV   50 (479)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCc
Confidence            34579999999999999999999996 999999999744

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.00  E-value=7.5e-06  Score=71.00  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+||||||+|.||+.+|.+++++ |.+|+|||++...
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~~   43 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLFG   43 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCCC
Confidence            468999999999999999999996 9999999998643

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.00  E-value=7.6e-06  Score=70.14  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++||||||+|.+|+.+|.+++++ |.+|+|||+++.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~-G~~V~lveK~~~   39 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASA-GFKVAVISKVFP   39 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHC-CCcEEEEEccCC
Confidence            468999999999999999999996 999999999864

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.00  E-value=7.9e-06  Score=69.13  Aligned_cols=35  Identities=29%  Similarity=0.549  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEec
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEA   61 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~   61 (146)
                      +..+|++|||||.+|+++|+.|++ .++++|+||||
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            457899999999999999999998 35899999999

>PRK10262 thioredoxin reductase; Provisional

Probab=97.99  E-value=9.5e-06  Score=64.35  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ...+|++|||+|++|+.+|..|++. |++|+++|+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEee
Confidence            4679999999999999999999996 9999999864

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.99  E-value=8.7e-06  Score=70.11  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=33.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++||||||+|.||+.+|.++++. |.+|+|||++...
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lleK~~~~   42 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQS-GQSCALLSKVFPT   42 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCC
Confidence            468999999999999999999996 9999999998653

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.99  E-value=9.2e-06  Score=69.50  Aligned_cols=37  Identities=22%  Similarity=0.438  Sum_probs=33.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|+||||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~-G~~v~liEk~~~~   41 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADS-GLEPLIVEKQDKV   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            489999999999999999999996 9999999997553

>PLN02546 glutathione reductase

Probab=97.99  E-value=8e-06  Score=69.98  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=31.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      .+||++|||+|++|..+|.++++. |++|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            369999999999999999999996 999999996

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.98  E-value=8.6e-06  Score=70.25  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++||||||+|.+|+.+|.++++. |.+|+|||++..
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~-G~~V~lveK~~~   46 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEA-GLKTACITKVFP   46 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCC
Confidence            478999999999999999999996 999999999864

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.98  E-value=9.1e-06  Score=65.70  Aligned_cols=38  Identities=37%  Similarity=0.581  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+|+||||+|.+|+++|.+|+++ |++|+|||+....
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeq   40 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQ   40 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhc-CceEEEEcccccc
Confidence            3478999999999999999999996 9999999997664

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.98  E-value=8.3e-06  Score=67.71  Aligned_cols=36  Identities=33%  Similarity=0.447  Sum_probs=31.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++||||||+|.+|+.+|.+++ + |.+|+|||+++..
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~-G~~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-K-DLKILMVSKGKLN   38 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-c-CCCEEEEecCCCC
Confidence            4689999999999999999974 4 8999999998764

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.98  E-value=1e-05  Score=67.10  Aligned_cols=35  Identities=40%  Similarity=0.600  Sum_probs=32.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ++||++|||+|.+|+.+|..|+++ |++|+|||++.
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~~-g~~v~vi~~~~   35 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAEA-GKRVALVAKGQ   35 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEECCC
Confidence            368999999999999999999997 99999999974

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.97  E-value=9.5e-06  Score=67.90  Aligned_cols=34  Identities=35%  Similarity=0.498  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +||||||+|.+|+.+|.+++++ |.+|+|||++..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            6999999999999999999996 999999999854

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.97  E-value=9.4e-06  Score=69.91  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+||+|||+|.+|+.+|.++++. |.+|+|||++..
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~vleK~~~   46 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARA-GLSVAVLSKVFP   46 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCC
Confidence            468999999999999999999996 999999999754

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.97  E-value=1.2e-05  Score=69.80  Aligned_cols=39  Identities=33%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++||+|||+|++|+++|..|++.+|.+|.|||+.+..
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~   68 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR   68 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence            458899999999999999999999229999999998654

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.97  E-value=1e-05  Score=69.49  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      .++||||||+|.+|+.+|.+++++ ++.+|+|||++..
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            468999999999999999999985 2489999999865

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.96  E-value=9.8e-06  Score=70.41  Aligned_cols=37  Identities=30%  Similarity=0.343  Sum_probs=33.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++||||||+|.||+.+|.+++++ |.+|+|||++...
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~-G~~VilveK~~~~   85 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPT   85 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhc-CCcEEEEEcCCCC
Confidence            358999999999999999999996 9999999998653

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.96  E-value=9.7e-06  Score=69.28  Aligned_cols=33  Identities=27%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ||||||+|.+|+.+|.+++++ |.+|+|||+++.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~-G~~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKA-GLNTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHC-CCcEEEEeccCC
Confidence            899999999999999999996 999999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN02815 L-aspartate oxidase

Probab=97.95  E-value=1.1e-05  Score=69.51  Aligned_cols=40  Identities=30%  Similarity=0.475  Sum_probs=34.3

Q ss_pred             cccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        24 ~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +....++||||||+|.+|+.+|.++++. | +|+|||+++..
T Consensus        24 ~~~~~~~DVlVVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~   63 (594)
T PLN02815         24 DESTKYFDFLVIGSGIAGLRYALEVAEY-G-TVAIITKDEPH   63 (594)
T ss_pred             cCcccccCEEEECccHHHHHHHHHHhhC-C-CEEEEECCCCC
Confidence            3334578999999999999999999996 8 89999998764

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.95  E-value=1.7e-05  Score=66.18  Aligned_cols=41  Identities=22%  Similarity=0.362  Sum_probs=36.1

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCCCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGGDPP   66 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~~~~   66 (146)
                      ...+++|++|||+|++|+.+|++|.++ |.. ++|+||..+.+
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~G   45 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVG   45 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcC
Confidence            345689999999999999999999996 777 99999997654

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.95  E-value=1.2e-05  Score=67.39  Aligned_cols=37  Identities=32%  Similarity=0.579  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+||+||||+|++|-.+|.++++. |++|+++|++..
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~   38 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGER   38 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCC
Confidence            4589999999999999999999996 888999999953

>PRK08275 putative oxidoreductase; Provisional

Probab=97.95  E-value=1.2e-05  Score=68.78  Aligned_cols=37  Identities=35%  Similarity=0.572  Sum_probs=33.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      .++||||||+|.||+.+|.++++. +|.+|+|||+++.
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            468999999999999999999984 3689999999875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.93  E-value=1.6e-05  Score=69.29  Aligned_cols=36  Identities=28%  Similarity=0.437  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+..+++|||+|++|+++|..|+++ |.+|.|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence            4578999999999999999999997 99999999975

>PRK05868 hypothetical protein; Validated

Probab=97.93  E-value=1.4e-05  Score=64.95  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      |++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~~   36 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPGL   36 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Confidence            899999999999999999996 9999999998764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.93  E-value=1.6e-05  Score=68.05  Aligned_cols=38  Identities=24%  Similarity=0.432  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++|++|||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus         5 ~~~~DvvVvG~G~aG~~aA~~aa~~-G~~v~llEk~~~~   42 (557)
T PRK07843          5 VQEYDVVVVGSGAAGMVAALTAAHR-GLSTVVVEKAPHY   42 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCC
Confidence            3478999999999999999999996 9999999997653

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.93  E-value=1.4e-05  Score=58.50  Aligned_cols=33  Identities=39%  Similarity=0.618  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      |++|||+|++|+.+|.+|++. +.+|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcC-CCeEEEEecccc
Confidence            799999999999999999985 999999988653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.93  E-value=1.2e-05  Score=68.91  Aligned_cols=36  Identities=31%  Similarity=0.413  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCC---CcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELD---WRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g---~~VlvLE~G~~~   65 (146)
                      ++||+|||+|.+|+.+|.+++++ |   .+|+|||++...
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~~   43 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQPM   43 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccCC
Confidence            68999999999999999999996 6   899999998654

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.92  E-value=1.5e-05  Score=66.05  Aligned_cols=39  Identities=33%  Similarity=0.443  Sum_probs=35.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ....|+||||+|.+|+++|++|.++ |++|+|||..+..+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcC
Confidence            4578999999999999999999997 99999999987753

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.92  E-value=1.8e-05  Score=68.08  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=35.3

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ....++|++|||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus         8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~-g~~v~~iek~~~~   47 (581)
T PRK06134          8 PPDLECDVLVIGSGAAGLSAAVTAAWH-GLKVIVVEKDPVF   47 (581)
T ss_pred             CCCCccCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            345589999999999999999999996 9999999997643

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.91  E-value=1.3e-05  Score=69.91  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=33.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+||||||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~-G~~VivleK~~~~   40 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQR-GLDTIVLSLVPAK   40 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHc-CCCEEEEeCCCCC
Confidence            368999999999999999999996 9999999997653

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.91  E-value=1.4e-05  Score=69.14  Aligned_cols=37  Identities=35%  Similarity=0.451  Sum_probs=33.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      .++||||||+|.||+.+|.++++. +|.+|+|||++..
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            468999999999999999999984 3899999999865

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.91  E-value=1.6e-05  Score=69.21  Aligned_cols=36  Identities=39%  Similarity=0.499  Sum_probs=32.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++||||||+|.+|+.+|.++++. |.+|+|||+...
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~-G~~VilieK~~~   69 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGEL-GYNVKVFCYQDS   69 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence            368999999999999999999996 999999998544

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.91  E-value=1.9e-05  Score=65.58  Aligned_cols=40  Identities=38%  Similarity=0.508  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~   66 (146)
                      ++.|||+|||+|..|+++|++|++. |.++|+|||+-+...
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a   41 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA   41 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence            3579999999999999999999994 349999999988764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.89  E-value=1.6e-05  Score=67.00  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+||+||||+|++|..+|.++++..|++|+|+|++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            46999999999999999999999338999999973

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.89  E-value=1.8e-05  Score=62.13  Aligned_cols=35  Identities=34%  Similarity=0.398  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+++|||+|++|+++|+.|+++ |.+|+|+|||.-.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~Gv   36 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGV   36 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCc
Confidence            3689999999999999999997 9999999998653

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.89  E-value=2e-05  Score=65.35  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +++|||+|++|+++|++|+++ |++|+|+|+.+..+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~G   35 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLG   35 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence            489999999999999999996 99999999987653

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.87  E-value=1.4e-05  Score=66.40  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhC-----CCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEEL-----DWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~-----g~~VlvLE~G~~~~   66 (146)
                      +++|||+|.+|+++|++|+++.     +.+|+|||+.+..+
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G   43 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG   43 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence            6999999999999999999851     37999999988764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.87  E-value=1.8e-05  Score=66.70  Aligned_cols=33  Identities=30%  Similarity=0.628  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +||+||||+|++|..+|.++++. |++|+++|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            58999999999999999999996 9999999973

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.87  E-value=2.1e-05  Score=64.21  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|++|+++|..|+++ |++|.|+|+.+..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcc
Confidence            4799999999999999999996 9999999998653

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.86  E-value=1.7e-05  Score=67.52  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++||||||+|.+|+.+|.++ +. |.+|+|||++..
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~-G~~VilleK~~~   40 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ER-GKNVVIVSKGLF   40 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hc-CCCEEEEEccCC
Confidence            368999999999999999999 75 999999999864

>PLN02568 polyamine oxidase

Probab=97.86  E-value=2.5e-05  Score=66.74  Aligned_cols=38  Identities=29%  Similarity=0.487  Sum_probs=33.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC-----CcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD-----WRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g-----~~VlvLE~G~~~~   66 (146)
                      +..|++|||+|.+|+++|.+|++. |     ++|+|+|+....+
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcC
Confidence            457999999999999999999985 5     8999999988764

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.86  E-value=2.1e-05  Score=67.37  Aligned_cols=37  Identities=35%  Similarity=0.458  Sum_probs=32.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++||||||+|.||+.+|.+++ . |.+|+|||+++..
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~-G~~V~lieK~~~~   43 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-S-HLRVGLITKDTLK   43 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-c-CCCEEEEEccCCC
Confidence            45789999999999999999985 3 8899999998754

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.85  E-value=2e-05  Score=68.74  Aligned_cols=33  Identities=24%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +||+||||+|++|..+|.++++. |++|+|+|++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            68999999999999999999996 9999999975

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.82  E-value=3.9e-05  Score=65.00  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=31.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      ...||++|||+|++|+.+|.+|++. |++|+|+|.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~-G~~v~li~~  242 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARK-GIRTGIVAE  242 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec
Confidence            4579999999999999999999996 999999986

>TIGR00551 nadB L-aspartate oxidase

Probab=97.82  E-value=2.5e-05  Score=65.69  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++|++|||+|.+|+.+|.++++. |. |+|||+++..
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~-G~-V~lleK~~~~   36 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQ-GR-VIVLSKAPVT   36 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhC-CC-EEEEEccCCC
Confidence            57999999999999999999996 76 9999998653

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.82  E-value=2.7e-05  Score=62.66  Aligned_cols=36  Identities=31%  Similarity=0.506  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++||++|||+|.+|+.++.+|.++ |+++.||-+|..
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~-Gk~c~iv~~gQs   36 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQA-GKRCAIVNRGQS   36 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhc-CCcEEEEeCChh
Confidence            479999999999999999999997 999999999975

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.81  E-value=2.9e-05  Score=64.54  Aligned_cols=35  Identities=26%  Similarity=0.215  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -|++|||+|++|+.+|..|+++ |++|.|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence            4899999999999999999996 9999999987654

>PRK12839 hypothetical protein; Provisional

Probab=97.80  E-value=3.5e-05  Score=66.23  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|.+|+.+|..++++ |.+|+|||++...
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~-g~~v~~iek~~~~   43 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYG-GAKVLVVEKASTC   43 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            478999999999999999999996 9999999998653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.79  E-value=3.6e-05  Score=69.93  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+.+|.++++. |++|+|+|+++..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~  198 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEA  198 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence            468999999999999999999995 9999999998665

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.78  E-value=3.8e-05  Score=66.09  Aligned_cols=38  Identities=26%  Similarity=0.260  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .++||||||+|.+|+.+|.+++++ ++.+|+|||++...
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            368999999999999999999985 25799999998654

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.78  E-value=2.9e-05  Score=67.28  Aligned_cols=34  Identities=29%  Similarity=0.511  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHH----HhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLS----EELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~----~~~g~~VlvLE~G~~~   65 (146)
                      ||||||+|.||+.+|.+++    ++ |.+|+|||++...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~-G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKK-GLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhC-CCeEEEEEccCCC
Confidence            8999999999999999998    54 8999999998653

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.78  E-value=3.9e-05  Score=66.06  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      ++|++|||+|.+|+.+|.+++++ ++.+|+|||++...
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~   40 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM   40 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            58999999999999999999984 25799999998654

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=3.2e-05  Score=64.91  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .|+|+|+|.||+.+|++|+++ |++|.|+|+++..+
T Consensus         2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~G   36 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLG   36 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccC
Confidence            589999999999999999997 99999999998764

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.77  E-value=4.3e-05  Score=69.36  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ....+++|||+|+||+.+|+.|++. |++|+|+|+.+..
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccc
Confidence            3468999999999999999999996 9999999998654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.77  E-value=3.7e-05  Score=69.24  Aligned_cols=36  Identities=33%  Similarity=0.500  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+||||+|.+|+.+|.++++. |.+|+|||++..
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~-G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEH-GANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccc
Confidence            478999999999999999999996 999999999875

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.76  E-value=3.8e-05  Score=65.29  Aligned_cols=38  Identities=34%  Similarity=0.594  Sum_probs=35.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++.+|++|||||..|+-+|..++.+ |.+|+|+|+++.-
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~R-Gl~v~LvE~~D~A   47 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKGDLA   47 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhC-CCeEEEEecCccc
Confidence            3789999999999999999999996 9999999999763

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.75  E-value=3.9e-05  Score=70.83  Aligned_cols=37  Identities=30%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+||||||+|.+|+.+|.+.+++ |.+|+|||+++..
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~~  444 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAKL  444 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCCC
Confidence            468999999999999999999996 9999999998764

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.75  E-value=4.2e-05  Score=62.69  Aligned_cols=34  Identities=38%  Similarity=0.495  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~   65 (146)
                      +++|||+|++|+++|..|+++ | .+|.|+|+.+..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcC
Confidence            689999999999999999997 6 599999998664

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.74  E-value=4.5e-05  Score=64.62  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++||||||+|.||+.+|.++++  +.+|+|||+++..
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~   37 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKR   37 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCC
Confidence            6899999999999999999865  7899999998754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.74  E-value=4.1e-05  Score=64.90  Aligned_cols=34  Identities=29%  Similarity=0.542  Sum_probs=31.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      ...||++|||+|++|+.+|.+|++. |++|+|+|.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec
Confidence            4579999999999999999999996 999999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.73  E-value=4.2e-05  Score=65.79  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=31.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++||||||+|.+|+.+|.++++  +.+|+|||++..
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~--~~~VilleK~~~   38 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGP--RARTAVLTKLYP   38 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHh--CCCEEEEeCCCC
Confidence            46899999999999999999987  389999999864

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.73  E-value=4.2e-05  Score=65.18  Aligned_cols=36  Identities=39%  Similarity=0.591  Sum_probs=32.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++||||||+|.+|+.+|.++++.  .+|+|||++...
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~~   42 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPLS   42 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCCC
Confidence            468999999999999999999883  799999998753

>KOG2820|consensus

Probab=97.73  E-value=4e-05  Score=61.71  Aligned_cols=38  Identities=34%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ....|+||||+|..|+.+|++|++. |.++++||+-+.+
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~p   42 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPLP   42 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence            4578999999999999999999997 8999999998765

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.73  E-value=6.2e-05  Score=64.73  Aligned_cols=38  Identities=32%  Similarity=0.454  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +.++|++|||+|.+|+.+|..++++ |++|+|||+.+..
T Consensus        14 ~~~~dvvvvG~G~aG~~aa~~~~~~-g~~v~l~ek~~~~   51 (578)
T PRK12843         14 DAEFDVIVIGAGAAGMSAALFAAIA-GLKVLLVERTEYV   51 (578)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            4578999999999999999999996 9999999997653

>PRK12831 putative oxidoreductase; Provisional

Probab=97.72  E-value=5.7e-05  Score=63.32  Aligned_cols=38  Identities=26%  Similarity=0.422  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ....|++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence            3467999999999999999999996 9999999987653

>KOG2415|consensus

Probab=97.72  E-value=4.2e-05  Score=63.35  Aligned_cols=39  Identities=36%  Similarity=0.511  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-----CCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-----LDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-----~g~~VlvLE~G~~~~   66 (146)
                      ..+|++|||+|++|+++|.||.+.     ...+|.|+|++...+
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G  118 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG  118 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC
Confidence            368999999999999999999862     256999999988754

>TIGR00275 flavoprotein, HI0933 family

Probab=97.69  E-value=3.4e-05  Score=63.39  Aligned_cols=33  Identities=39%  Similarity=0.563  Sum_probs=30.1

Q ss_pred             EEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        33 iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +|||+|++|+++|.+++++ |++|+|||+.+..+
T Consensus         1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~G   33 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKIG   33 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcccc
Confidence            6999999999999999996 99999999987653

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.67  E-value=6.1e-05  Score=62.48  Aligned_cols=34  Identities=47%  Similarity=0.707  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ||++|||+|.+|+.+|..|+++ +++|+|+|++..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~-g~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEA-GKKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCCEEEEeCCCc
Confidence            6999999999999999999996 999999999863

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.66  E-value=6.2e-05  Score=62.74  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +++|||+|++|..+|.++++. |++|+|+|++..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcc
Confidence            789999999999999999996 999999999754

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.65  E-value=5.5e-05  Score=62.20  Aligned_cols=28  Identities=46%  Similarity=0.631  Sum_probs=25.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEE
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLI   59 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvL   59 (146)
                      ||||||+|.||+.+|..+++. |.+|+|+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~-G~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARM-GAKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-T--EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCCEEEE
Confidence            899999999999999999997 9999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.63  E-value=0.00011  Score=62.17  Aligned_cols=44  Identities=30%  Similarity=0.327  Sum_probs=36.1

Q ss_pred             ccccCCcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCCC
Q psy3408          23 EDNISGKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPP   66 (146)
Q Consensus        23 ~~~~~~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~~   66 (146)
                      +.......+++|||+|++|+.+|..|++ ..|++|.|+|+.+.+.
T Consensus        20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            3334456799999999999999999986 2499999999988753

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.62  E-value=8e-05  Score=62.03  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      |++|||+|.+|+.+|..|++. |.+|+|+|+.+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence            799999999999999999996 999999998665

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.62  E-value=8.8e-05  Score=63.70  Aligned_cols=38  Identities=29%  Similarity=0.491  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++|+||||+|.||+.+|.+++++ |.+|+|||+....
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~   41 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPK   41 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccC
Confidence            4579999999999999999999997 8999999998764

>KOG1399|consensus

Probab=97.62  E-value=7.2e-05  Score=62.58  Aligned_cols=39  Identities=28%  Similarity=0.366  Sum_probs=35.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE   67 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~   67 (146)
                      ..-+++|||+|++|+++|..|.+. |+.|.++||.++.+.
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGG   43 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGG   43 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccc
Confidence            456999999999999999999996 999999999988753

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.61  E-value=9.4e-05  Score=62.13  Aligned_cols=35  Identities=29%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +++|||+|.+|+++|++|+++ |++|+|+|+.+..+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~G   35 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIG   35 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCC
Confidence            479999999999999999996 99999999987653

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.60  E-value=0.00011  Score=61.33  Aligned_cols=38  Identities=29%  Similarity=0.415  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...++++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            3468999999999999999999996 9999999997654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.59  E-value=9.2e-05  Score=67.05  Aligned_cols=38  Identities=32%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+|+|||+|+||+++|..|+++ |++|+|+|+.+..+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~G  342 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLG  342 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCC
Confidence            357999999999999999999996 99999999987653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.58  E-value=0.00012  Score=61.31  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~  178 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRI  178 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence            457999999999999999999996 9999999998664

>PLN02529 lysine-specific histone demethylase 1

Probab=97.56  E-value=0.00013  Score=64.52  Aligned_cols=38  Identities=32%  Similarity=0.466  Sum_probs=34.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...|++|||+|++|+.+|..|+++ |++|+|+|+.+..+
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G  196 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPG  196 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCc
Confidence            467999999999999999999996 99999999987654

>PRK07846 mycothione reductase; Reviewed

Probab=97.56  E-value=0.0001  Score=61.53  Aligned_cols=33  Identities=36%  Similarity=0.669  Sum_probs=28.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +||+||||+|++|..+|.+  +. |++|+|+|++..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~-G~~V~lie~~~~   33 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FA-DKRIAIVEKGTF   33 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HC-CCeEEEEeCCCC
Confidence            4899999999999988865  43 999999998643

>PLN02612 phytoene desaturase

Probab=97.56  E-value=0.00013  Score=62.60  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|.+|+++|++|+++ |++|+|+|+.+..
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~  128 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVL  128 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCC
Confidence            357999999999999999999996 9999999997654

>KOG2614|consensus

Probab=97.53  E-value=0.00014  Score=59.83  Aligned_cols=36  Identities=33%  Similarity=0.538  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+++|||||.+|+++|..|.++ |.+|+|+|+..++
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecccc
Confidence            46899999999999999999996 9999999996554

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.53  E-value=0.00017  Score=62.82  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=33.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~  362 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEI  362 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            457999999999999999999996 9999999997654

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.52  E-value=9.9e-05  Score=62.60  Aligned_cols=34  Identities=29%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++||||||+|.+|+.+|.+++   +.+|+|||+++.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCC
Confidence            4689999999999999999985   459999999875

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.51  E-value=0.00016  Score=64.36  Aligned_cols=38  Identities=29%  Similarity=0.524  Sum_probs=34.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+++|||+|++|+.+|..|++. |++|+|+|+....+
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~G  274 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCC
Confidence            467999999999999999999996 99999999987654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.51  E-value=0.00016  Score=65.92  Aligned_cols=37  Identities=27%  Similarity=0.140  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|++|+.+|..|+++ |++|+|+|+.+..
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~  465 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVV  465 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence            357999999999999999999997 9999999998655

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.51  E-value=0.00011  Score=63.69  Aligned_cols=31  Identities=35%  Similarity=0.507  Sum_probs=29.3

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      |||||+|.||+.+|.++++. |.+|+|||+++
T Consensus         1 VlVVG~G~AGl~AAl~Aae~-G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAEL-GYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHc-CCCEEEEEecC
Confidence            68999999999999999996 99999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.51  E-value=0.00014  Score=64.54  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      +++|||+|++|+++|..|+++ +|++|+|+|+.+..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            689999999999999999985 38999999998753

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.49  E-value=0.00016  Score=64.02  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=33.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~  466 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEI  466 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            467999999999999999999996 9999999996543

>PLN02487 zeta-carotene desaturase

Probab=97.48  E-value=0.00022  Score=61.38  Aligned_cols=38  Identities=26%  Similarity=0.261  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+++|||+|++|+.+|++|+++ |++|+|+|+.+..+
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~g  111 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIG  111 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCC
Confidence            346999999999999999999996 99999999987653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.47  E-value=0.00016  Score=62.57  Aligned_cols=34  Identities=35%  Similarity=0.535  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ||+||||+|++|+.+|..+++. |.+|+|||+...
T Consensus         1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~~   34 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNLD   34 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCCEEEEecccc
Confidence            7999999999999999999996 999999998743

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>KOG0685|consensus

Probab=97.47  E-value=0.00019  Score=59.99  Aligned_cols=40  Identities=35%  Similarity=0.439  Sum_probs=35.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE   67 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~   67 (146)
                      ....++|||+|.+|+.+|.+|-+.....|+|+|+.++.+.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence            3558999999999999999999877889999999988753

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.47  E-value=0.00021  Score=59.58  Aligned_cols=38  Identities=26%  Similarity=0.457  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ....+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCC
Confidence            3457999999999999999999996 9999999998654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.47  E-value=0.00032  Score=44.63  Aligned_cols=34  Identities=35%  Similarity=0.470  Sum_probs=31.6

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ++|||+|+.|+-+|..|++. +++|.|+|+.+...
T Consensus         2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~   35 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh
Confidence            78999999999999999996 99999999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR03452 mycothione_red mycothione reductase

Probab=97.46  E-value=0.00017  Score=60.19  Aligned_cols=33  Identities=30%  Similarity=0.538  Sum_probs=27.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +||+||||+|++|..+|.  ++. |++|.|+|++..
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~-g~~V~lie~~~~   34 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFA-DKRIAIVEKGTF   34 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHC-CCeEEEEeCCCC
Confidence            699999999999988754  444 999999998643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.45  E-value=0.0002  Score=59.83  Aligned_cols=35  Identities=37%  Similarity=0.477  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~~~   66 (146)
                      .++|||+|.+|+.+|++|.++ +  ..+.|+|++++.+
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~G   38 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVG   38 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCC
Confidence            489999999999999999996 6  8999999997753

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.44  E-value=0.00023  Score=64.67  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|++|+.+|..|+++ |++|+|+|+.+..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~  574 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENA  574 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence            456999999999999999999997 9999999998654

>KOG2665|consensus

Probab=97.41  E-value=0.00013  Score=58.61  Aligned_cols=44  Identities=30%  Similarity=0.457  Sum_probs=38.1

Q ss_pred             cccccCCcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408          22 AEDNISGKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP   65 (146)
Q Consensus        22 ~~~~~~~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~   65 (146)
                      +.+.....||.+|||+|..|+..|.+|.- +|+.+|.|||+....
T Consensus        41 ~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l   85 (453)
T KOG2665|consen   41 AESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL   85 (453)
T ss_pred             ccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence            34556678999999999999999999984 689999999998764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.41  E-value=0.00022  Score=59.68  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      |+||||+|++|..+|..+++. |++|+|+|++..
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~~   35 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDGL   35 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCC
Confidence            899999999999999999996 999999998753

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.40  E-value=0.00022  Score=59.70  Aligned_cols=43  Identities=42%  Similarity=0.606  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC---CcEEEEecCCCCC---CCccCcch
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD---WRVLLIEAGGDPP---EASELPGY   74 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g---~~VlvLE~G~~~~---~~~~~p~~   74 (146)
                      ||+|||+|++|.++|..|++. +   .+|+|||+...+.   ....+|.+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~-~~~~~~v~lie~~~~~~~~vGe~~~p~~   49 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARA-GPDALSVTLIESPDIPRIGVGESTLPSL   49 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHH-CTCSSEEEEEE-SSS---SSEEE--THH
T ss_pred             CEEEECCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCCCCCccccchHHH
Confidence            799999999999999999996 5   8999999987653   13455543

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.38  E-value=0.00042  Score=58.36  Aligned_cols=39  Identities=26%  Similarity=0.417  Sum_probs=34.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...-+++|||+|.+|+.+|.+|++. |.+|.|+|+.+..+
T Consensus       122 ~v~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiG  160 (622)
T COG1148         122 EVSKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIG  160 (622)
T ss_pred             hhccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccc
Confidence            3455899999999999999999997 99999999988754

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.38  E-value=0.00041  Score=59.63  Aligned_cols=38  Identities=21%  Similarity=0.177  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh---CCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE---LDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~---~g~~VlvLE~G~~~~   66 (146)
                      .-+++|||||.+|+++|..|++.   +|.+|.|+|+.+..+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G   62 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG   62 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence            46899999999999999999985   478999999987754

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.35  E-value=0.00032  Score=58.54  Aligned_cols=39  Identities=31%  Similarity=0.435  Sum_probs=30.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +.+||+||+|.|..-+++|..|+++ |++||.||+.+..+
T Consensus         2 ~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYG   40 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSC
T ss_pred             CccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcC
Confidence            5689999999999999999999997 99999999998875

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.29  E-value=0.00044  Score=60.38  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~  228 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQA  228 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            357999999999999999999996 9999999998654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.25  E-value=0.00051  Score=55.34  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ..+++|||+|++|+.+|..|++. |++|.++|+.+...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g   54 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG   54 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence            45999999999999999999996 99999999987653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.24  E-value=0.00053  Score=57.54  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            467999999999999999999996 9999999998654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN03000 amine oxidase

Probab=97.23  E-value=0.00051  Score=61.59  Aligned_cols=38  Identities=29%  Similarity=0.466  Sum_probs=34.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+++|||+|++|+.+|..|.+. |++|+|+|+.++.+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riG  220 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence            468999999999999999999996 99999999988764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.22  E-value=0.00066  Score=59.10  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence            467899999999999999999996 9999999998764

>KOG3855|consensus

Probab=97.20  E-value=0.00047  Score=56.96  Aligned_cols=41  Identities=41%  Similarity=0.713  Sum_probs=34.1

Q ss_pred             cccCCcccEEEECCCHHHHHHHHHHHHhC---CCcEEEEecCCC
Q psy3408          24 DNISGKFDFIIVGGGSAGAVLANRLSEEL---DWRVLLIEAGGD   64 (146)
Q Consensus        24 ~~~~~~~D~iIIG~G~aG~~~A~~L~~~~---g~~VlvLE~G~~   64 (146)
                      .-....||++|||+|+.|..+|..|..++   .+||+|+|.+..
T Consensus        31 ~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   31 STDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             cCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            33445899999999999999999998632   679999999944

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.18  E-value=0.00031  Score=58.10  Aligned_cols=30  Identities=37%  Similarity=0.496  Sum_probs=28.1

Q ss_pred             EECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        34 IIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      |||+|.+|+.+|.+++++ |.+|+||||.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~-Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRA-GASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence            799999999999999996 999999999874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.14  E-value=0.00093  Score=56.37  Aligned_cols=36  Identities=25%  Similarity=0.343  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~  178 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRC  178 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            46999999999999999999996 9999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.14  E-value=0.0005  Score=62.30  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ....|+|||+|+||+.+|+.|++. |++|.|+|+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEccc
Confidence            456999999999999999999996 9999999985

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.13  E-value=0.00097  Score=56.51  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=33.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+.|||+|++|+.+|.+|.++.+++|.|+|+-+.+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            45799999999999999987654599999999998763

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.11  E-value=0.00073  Score=57.75  Aligned_cols=35  Identities=29%  Similarity=0.410  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .|+|||+|++|+++|..|.+. |..|+++|+.++.+
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iG   37 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIG   37 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSS
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCC
Confidence            589999999999999999996 99999999998865

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1335|consensus

Probab=97.10  E-value=0.0011  Score=54.61  Aligned_cols=36  Identities=25%  Similarity=0.554  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..||++|||+|++|-++|.+.++. |.+...+|+...
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~   73 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGT   73 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCc
Confidence            489999999999999999999996 999999999544

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.03  E-value=0.0012  Score=54.07  Aligned_cols=36  Identities=31%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~~~   65 (146)
                      ..+++|||+|++|+.+|..|++. +.  +|+|+++.+..
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~~   40 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERHL   40 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCCC
Confidence            35899999999999999999985 55  79999998654

>PLN02976 amine oxidase

Probab=97.03  E-value=0.0011  Score=62.17  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .+|++|||+|++|+.+|..|++. |++|+|||+.+..+
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vG  729 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIG  729 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCC
Confidence            57999999999999999999996 99999999976653

>KOG4716|consensus

Probab=97.03  E-value=0.00071  Score=54.94  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=31.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ...||.||||+|.+|+++|.+.+.- |++|.+||-=
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV   51 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFV   51 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeec
Confidence            4579999999999999999999995 9999999974

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.03  E-value=0.001  Score=56.98  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=32.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~  172 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKL  172 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            356899999999999999999996 9999999987654

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.96  E-value=0.0014  Score=55.00  Aligned_cols=38  Identities=32%  Similarity=0.622  Sum_probs=35.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~   65 (146)
                      +++||++||+|..|++++..|++ .|.+++.|+||-+..
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~   40 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV   40 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence            57999999999999999999998 689999999998765

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG2853|consensus

Probab=96.96  E-value=0.001  Score=54.09  Aligned_cols=40  Identities=28%  Similarity=0.452  Sum_probs=34.3

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~   65 (146)
                      ...++|++|||+|-.|++.|.-|.+   +.|.+|+|+|+.+..
T Consensus        83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            3458899999999999999999986   347999999998764

>PRK13984 putative oxidoreductase; Provisional

Probab=96.94  E-value=0.0017  Score=56.09  Aligned_cols=38  Identities=29%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ....+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~  318 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP  318 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            3467899999999999999999996 9999999998754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.92  E-value=0.0015  Score=54.18  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      +++|||+|++|..+|.+|++. ++.+|+|+|+.+..
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            699999999999999999873 46899999999764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.88  E-value=0.0016  Score=53.84  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      +++|||+|++|+.+|..|++. ++.+|+|+|+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            589999999999999999984 24599999998753

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.84  E-value=0.0011  Score=56.65  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..|||||||+|-||+-+|...++. |.+++||=...+
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~d   38 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNLD   38 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhcc-CCeEEEEEcCCC
Confidence            459999999999999999999996 999999876644

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.76  E-value=0.002  Score=53.30  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +...++||||+|++|+.+|.+|.+. +.+|+|||+.+..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence            4467999999999999999999764 7899999987654

>KOG4254|consensus

Probab=96.75  E-value=0.0017  Score=54.34  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=34.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...||++|||+|..|+.+|..|++. +.+|.++|+....
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~-g~~V~vlerrhv~   49 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARY-GQSVAVLERRHVI   49 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhc-CcceEEEEEeeec
Confidence            6689999999999999999999995 9999999998554

>KOG0405|consensus

Probab=96.69  E-value=0.0022  Score=52.32  Aligned_cols=35  Identities=34%  Similarity=0.574  Sum_probs=32.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..|||+|||+|.+|...|.+.++. |.+|.|+|..-
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f   53 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASH-GAKVALCELPF   53 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhc-CceEEEEecCC
Confidence            489999999999999999999997 99999999983

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.66  E-value=0.0025  Score=51.57  Aligned_cols=38  Identities=29%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +.||+|+||.|++++.+|..|.+.+..+++.||+.+..
T Consensus         1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            36899999999999999999999756999999987754

>KOG2960|consensus

Probab=96.63  E-value=0.00063  Score=52.08  Aligned_cols=37  Identities=38%  Similarity=0.561  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~   65 (146)
                      +.|+||||+|.+|+.+|+..++ +|..+|.+||+.-.+
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP  113 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP  113 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence            4599999999999999999994 689999999996544

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.60  E-value=0.0031  Score=50.69  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~~   65 (146)
                      ++||||+|++|..+|.+|.++  ++.+|+|+|+.+..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            489999999999999999642  47899999988664

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=96.59  E-value=0.0022  Score=54.09  Aligned_cols=33  Identities=33%  Similarity=0.516  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ||+|||+|.+|+++|..|++  ..+|+||-|++..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~--~~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAP--SFRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCC--CCcEEEEeCCCCC
Confidence            99999999999999999988  4899999998764

>KOG0042|consensus

Probab=96.56  E-value=0.0009  Score=57.05  Aligned_cols=36  Identities=36%  Similarity=0.597  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +||++|||+|..|.-+|.-.+-+ |.+|.++|+++..
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TR-GLktaLVE~~DF~  102 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATR-GLKTALVEAGDFA  102 (680)
T ss_pred             cccEEEECCCccCcceeehhhcc-cceeEEEeccccc
Confidence            59999999999999999998885 9999999999874

>PRK09897 hypothetical protein; Provisional

Probab=96.55  E-value=0.004  Score=53.34  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~   66 (146)
                      .+++|||+|++|+.+|.+|.+. ...+|.|+|+....+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG   39 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence            4799999999999999999873 245899999976543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.51  E-value=0.0052  Score=49.84  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~   64 (146)
                      .+++|||+|+||..+|.+|.+ .++.+|+||++.+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            489999999999999999987 34678999998764

>KOG2311|consensus

Probab=96.46  E-value=0.0037  Score=52.83  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=31.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+|||||||+|-||+-+|...++- |.+.++|-..-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhc-CCceEEeeccc
Confidence            6689999999999999999998886 88888876653

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.30  E-value=0.005  Score=51.77  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=33.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.|.|||+||+|+.+|..|+++ |++|++.|+-+..+
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~G  159 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDG  159 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCc
Confidence            6899999999999999999997 99999999987753

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.22  E-value=0.006  Score=49.76  Aligned_cols=37  Identities=27%  Similarity=0.278  Sum_probs=33.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...++.|||+|.+|+++|.-|++  .++|.|.|++...+
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rlG   43 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRLG   43 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhc--ccceEEEecccccc
Confidence            45689999999999999999998  58999999987754

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.11  E-value=0.0095  Score=47.84  Aligned_cols=38  Identities=29%  Similarity=0.364  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE   67 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~   67 (146)
                      ..+++|||+|+.|+.+|..++++ |++|+++|+.+....
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~  173 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGG  173 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccch
Confidence            46999999999999999999996 999999999988643

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.0034  Score=51.26  Aligned_cols=35  Identities=34%  Similarity=0.563  Sum_probs=29.7

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcE-EEEec
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRV-LLIEA   61 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~V-lvLE~   61 (146)
                      ....||++|||+|++|.++|...+++ |.+. ++-||
T Consensus       208 ~k~~yDVLvVGgGPAgaaAAiYaARK-GiRTGl~aer  243 (520)
T COG3634         208 AKDAYDVLVVGGGPAGAAAAIYAARK-GIRTGLVAER  243 (520)
T ss_pred             ccCCceEEEEcCCcchhHHHHHHHhh-cchhhhhhhh
Confidence            34579999999999999999999997 7776 66666

>KOG1276|consensus

Probab=95.96  E-value=0.013  Score=48.90  Aligned_cols=39  Identities=28%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPPE   67 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~~   67 (146)
                      .-+++|+|+|.+|+.+|+.|++. +...+.|.|++++.+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG   50 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG   50 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence            56899999999999999999985 3344677999988653

>KOG4405|consensus

Probab=95.94  E-value=0.011  Score=49.23  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=36.9

Q ss_pred             cccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        24 ~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +....+||+||||.|.-=+++|...++. |.+||.|++....+
T Consensus         3 D~lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYG   44 (547)
T KOG4405|consen    3 DILPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYG   44 (547)
T ss_pred             cCCchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccC
Confidence            3455689999999999999999999996 99999999987764

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=95.80  E-value=0.013  Score=41.86  Aligned_cols=32  Identities=22%  Similarity=0.449  Sum_probs=27.5

Q ss_pred             EEECCCHHHHHHHHHHHHhC----CCcEEEEecCCC
Q psy3408          33 IIVGGGSAGAVLANRLSEEL----DWRVLLIEAGGD   64 (146)
Q Consensus        33 iIIG~G~aG~~~A~~L~~~~----g~~VlvLE~G~~   64 (146)
                      .|||+|++|+.++.+|.+..    ..++.|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            49999999999999999863    679999999544

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.70  E-value=0.02  Score=46.56  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +--+.|||+|.+|+-+|++++++ |.+|.|.|..+..
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~k   38 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPVK   38 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHc-CCcEEEEEccccc
Confidence            34688999999999999999996 9999999998764

>KOG0399|consensus

Probab=95.69  E-value=0.018  Score=53.35  Aligned_cols=45  Identities=22%  Similarity=0.321  Sum_probs=37.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CccCcch
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE--ASELPGY   74 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~--~~~~p~~   74 (146)
                      -..+.|||+|++|+.+|..|-++ ||.|+|.||.++.+.  -+-+|.+
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggll~ygipnm 1831 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGLLMYGIPNM 1831 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCceeeecCCcc
Confidence            46899999999999999999996 999999999988752  2344543

>KOG1800|consensus

Probab=95.61  E-value=0.021  Score=47.07  Aligned_cols=37  Identities=30%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~   65 (146)
                      ...+.|||+|+||..+|+.|-+ .++.+|-|.|+-+.+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            4489999999999999999988 467999999999875

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.55  E-value=0.022  Score=43.50  Aligned_cols=33  Identities=39%  Similarity=0.671  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|||+|..|...|..|++. |+.|+++|+-+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence            589999999999999999997 999999999764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.53  E-value=0.026  Score=46.82  Aligned_cols=37  Identities=32%  Similarity=0.519  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G~~~   65 (146)
                      .-.+||||+|++|+.+|.+|.+++ +.++++||+.+..
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h   40 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH   40 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence            457999999999999999999963 4789999998764

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=95.46  E-value=0.019  Score=48.15  Aligned_cols=40  Identities=30%  Similarity=0.518  Sum_probs=34.8

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHh----CCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEE----LDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~----~g~~VlvLE~G~~~   65 (146)
                      ....+|+|+||+|++|..+|++++..    +..+++++|.|.+.
T Consensus        15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~   58 (486)
T COG2509          15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI   58 (486)
T ss_pred             hhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence            45679999999999999999999964    37899999999765

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.35  E-value=0.037  Score=38.88  Aligned_cols=31  Identities=29%  Similarity=0.588  Sum_probs=28.8

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.|+|+|..|+..|.+|+++ +++|.++-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence            57999999999999999995 99999999987

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.30  E-value=0.032  Score=45.61  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  179 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAATV  179 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            3699999999999999999996 9999999998764

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.23  E-value=0.034  Score=46.57  Aligned_cols=35  Identities=31%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|+.|+-+|..|++. |.+|.|+|+++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~i  215 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRI  215 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCcc
Confidence            3799999999999999999996 9999999998764

>KOG2404|consensus

Probab=95.06  E-value=0.037  Score=44.97  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+||||+|.+|++++.++-.. +..|++||+....
T Consensus        11 pvvVIGgGLAGLsasn~iin~-gg~V~llek~~s~   44 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINK-GGIVILLEKAGSI   44 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhc-CCeEEEEeccCCc
Confidence            599999999999999999996 6679999997654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.04  E-value=0.041  Score=44.57  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. +.+|.++|+++..
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~~  176 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAASL  176 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCcc
Confidence            3799999999999999999996 9999999998754

>KOG1439|consensus

Probab=95.01  E-value=0.014  Score=48.14  Aligned_cols=39  Identities=26%  Similarity=0.419  Sum_probs=35.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +++||+||+|.|.-=|+++..|+.+ |++||++++.+..+
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG   40 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYG   40 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCC
Confidence            4579999999999999999999997 99999999988764

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.99  E-value=0.045  Score=45.30  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  192 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTI  192 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            699999999999999999995 9999999998754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.90  E-value=0.047  Score=45.35  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCC
Confidence            4799999999999999999996 9999999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=94.89  E-value=0.056  Score=48.83  Aligned_cols=37  Identities=14%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh---CCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE---LDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~---~g~~VlvLE~G~~~~   66 (146)
                      -+++|||+|++|..+|.+|.+.   .+.+|+|+++.+...
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            3799999999999999999763   357999999997753

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.88  E-value=0.041  Score=49.19  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=29.9

Q ss_pred             EEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGDPP   66 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~~~   66 (146)
                      ++|||+|++|..+|.+|.+.  .+++|+|+|+.+...
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~   37 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN   37 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence            58999999999999998873  367999999987753

>KOG2844|consensus

Probab=94.88  E-value=0.041  Score=48.31  Aligned_cols=34  Identities=29%  Similarity=0.590  Sum_probs=28.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G   62 (146)
                      ...|++|||+|..|+.+|+.|++. |.+ ++++|+.
T Consensus        38 ~~A~vvViggG~~g~~~~yhlak~-g~k~avlle~~   72 (856)
T KOG2844|consen   38 STADVVVIGGGSLGCSTAYHLAKR-GMKGAVLLERS   72 (856)
T ss_pred             CcccEEEEcCCchhHHHHHHHHHc-cccceEEEeee
Confidence            357999999999999999999996 777 5666654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=94.87  E-value=0.052  Score=45.32  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|+.|+-+|..|++. |.+|.++|+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~l  205 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQL  205 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence            3799999999999999999986 9999999998764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=94.79  E-value=0.055  Score=45.19  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~i  201 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERV  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence            3799999999999999999996 9999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR02053 MerA mercuric reductase

Probab=94.77  E-value=0.056  Score=45.08  Aligned_cols=35  Identities=20%  Similarity=0.382  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  201 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSDRL  201 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcC
Confidence            4789999999999999999996 9999999998654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.77  E-value=0.062  Score=45.29  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~~   65 (146)
                      ++|.|||+|+.|+.+|.+|.+.  +..++.|+|.....
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            6899999999999999999883  23349999998764

>KOG3851|consensus

Probab=94.73  E-value=0.036  Score=44.94  Aligned_cols=39  Identities=28%  Similarity=0.467  Sum_probs=32.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .+++.++|||+|.+|+.+|.++.++ +.-+|-|||-..+.
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H   76 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH   76 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence            3689999999999999999999874 35589999987653

>PRK07846 mycothione reductase; Reviewed

Probab=94.70  E-value=0.059  Score=45.03  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l  201 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRL  201 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence            4799999999999999999995 9999999998764

>KOG2755|consensus

Probab=94.64  E-value=0.03  Score=44.15  Aligned_cols=34  Identities=44%  Similarity=0.652  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~   64 (146)
                      .+||||+|.||.++|..|++ .|...+++|-+.+.
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            37999999999999999997 46789999988765

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.63  E-value=0.06  Score=45.19  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|+.|+-+|..|++. |.+|.|||+++..
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~i  209 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQV  209 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence            3789999999999999999996 9999999998764

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=94.60  E-value=0.06  Score=44.24  Aligned_cols=37  Identities=30%  Similarity=0.370  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .||+||+|.|.-=++.+..|+-+ |++|++|++.+..+
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG   42 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYG   42 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccC
Confidence            69999999999999999999997 99999999988764

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=94.58  E-value=0.043  Score=43.68  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          39 SAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        39 ~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .+|+++|++|+++ |++|+|+|+.+..+
T Consensus         1 iaGL~aA~~L~~~-G~~v~vlEa~~r~G   27 (450)
T PF01593_consen    1 IAGLAAAYYLAKA-GYDVTVLEASDRVG   27 (450)
T ss_dssp             HHHHHHHHHHHHT-TTEEEEEESSSSSB
T ss_pred             ChHHHHHHHHHhC-CCCEEEEEcCCCCC
Confidence            4899999999997 99999999998875

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.53  E-value=0.067  Score=44.02  Aligned_cols=35  Identities=31%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  172 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERI  172 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence            3799999999999999999995 9999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.49  E-value=0.072  Score=44.65  Aligned_cols=35  Identities=17%  Similarity=0.222  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~i  209 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDRI  209 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCCC
Confidence            4789999999999999999996 9999999998764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.46  E-value=0.073  Score=42.27  Aligned_cols=33  Identities=33%  Similarity=0.471  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|.-|...|..|++. |.+|.++.|+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence            4689999999999999999996 99999999974

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.46  E-value=0.055  Score=38.78  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=28.6

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.|+|+|..|..+|..|+++ |++|.|..+..
T Consensus         2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            67999999999999999997 99999998864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=94.44  E-value=0.039  Score=45.78  Aligned_cols=38  Identities=45%  Similarity=0.733  Sum_probs=31.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC------------CcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD------------WRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g------------~~VlvLE~G~~~   65 (146)
                      ...+++|||+|+.|.=+|.+|++...            .+|.|+|+++..
T Consensus       154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            45689999999999999999987311            389999999875

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.40  E-value=0.077  Score=44.19  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  207 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRI  207 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCc
Confidence            3689999999999999999996 9999999998764

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.39  E-value=0.076  Score=44.38  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~  207 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLDRA  207 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence            789999999999999999996 9999999998754

>PRK06370 mercuric reductase; Validated

Probab=94.32  E-value=0.082  Score=44.11  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~  206 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRL  206 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCC
Confidence            3789999999999999999996 9999999998764

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.31  E-value=0.071  Score=44.25  Aligned_cols=40  Identities=28%  Similarity=0.322  Sum_probs=35.6

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++..+|+|.||-|++-+.+|..|.+..+++++.|||.+..
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            3567899999999999999999999767999999998864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.19  E-value=0.09  Score=43.72  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  210 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRL  210 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence            3699999999999999999996 9999999998764

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.18  E-value=0.078  Score=38.69  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=28.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.++|||+|.++.-+|..|++. +.+|.++=|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence            35899999999999999999997 89999998765

...

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.17  E-value=0.081  Score=43.95  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l  183 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDKI  183 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence            789999999999999999996 9999999998653

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.16  E-value=0.1  Score=41.42  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|.-|+..|..|+++ |+.|.++.++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            4699999999999999999996 99999999875

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=94.03  E-value=0.099  Score=43.46  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  204 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRI  204 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCc
Confidence            3799999999999999999996 9999999998754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=93.92  E-value=0.1  Score=43.03  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|+.|+-+|..|++. |.+|.++|+++..
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  184 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRI  184 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCccc
Confidence            4799999999999999999986 9999999998653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.90  E-value=0.11  Score=38.23  Aligned_cols=32  Identities=19%  Similarity=0.444  Sum_probs=27.3

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +.|||+|..|...|..++.. |++|.++|..+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHhC-CCcEEEEECChH
Confidence            67999999999999999996 999999998654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR03452 mycothione_red mycothione reductase

Probab=93.86  E-value=0.11  Score=43.40  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|+.|+-+|..|++. |.+|.++|+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~l  204 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKL  204 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence            3799999999999999999996 9999999998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=93.75  E-value=0.15  Score=42.97  Aligned_cols=35  Identities=29%  Similarity=0.460  Sum_probs=32.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .++|||+|.-|+=.|.-+++- |.+|.|||+++..-
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iL  209 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRIL  209 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCC
Confidence            589999999999999999995 99999999998753

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.72  E-value=0.1  Score=41.35  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ++.|||+|..|...|..|+++ |++|.++++.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence            588999999999999999996 99999999864

>KOG0404|consensus

Probab=93.71  E-value=0.082  Score=41.01  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|||+|+++-.+|..++++ ..|.+|.|-..
T Consensus         9 e~v~IiGSGPAa~tAAiYaara-elkPllfEG~~   41 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGMM   41 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhc-ccCceEEeeee
Confidence            4899999999999999999996 99999999753

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.69  E-value=0.11  Score=40.60  Aligned_cols=30  Identities=27%  Similarity=0.491  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      .+.|||+|..|...|..|+++ |++|.++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence            478999999999999999996 999999988

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.65  E-value=0.12  Score=43.37  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|||+|..|..+|..|.++ |.+|.++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLEL-GARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            3699999999999999999986 99999999764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=93.64  E-value=0.13  Score=42.78  Aligned_cols=34  Identities=26%  Similarity=0.284  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~  201 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELI  201 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCC
Confidence            689999999999999999986 9999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=93.50  E-value=0.14  Score=42.95  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.|+|+++..
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  218 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRL-GAEVTILEALPAF  218 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCcc
Confidence            3789999999999999999996 9999999998754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=93.37  E-value=0.16  Score=42.61  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~  212 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRV  212 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcC
Confidence            689999999999999999996 9999999998764

>PRK10262 thioredoxin reductase; Provisional

Probab=93.36  E-value=0.15  Score=40.32  Aligned_cols=35  Identities=26%  Similarity=0.231  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +++|.++++.+..
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCcc
Confidence            3789999999999999999996 8999999998643

>PLN02507 glutathione reductase

Probab=93.35  E-value=0.15  Score=43.24  Aligned_cols=34  Identities=21%  Similarity=0.181  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~  238 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELP  238 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCc
Confidence            799999999999999999986 9999999998754

>PRK06116 glutathione reductase; Validated

Probab=93.34  E-value=0.16  Score=42.23  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++++++..
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  202 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAP  202 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            3789999999999999999996 9999999998754

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.33  E-value=0.14  Score=39.87  Aligned_cols=31  Identities=23%  Similarity=0.478  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+.|||+|..|...|..|++. |++|.++.+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            478999999999999999996 9999999983

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.33  E-value=0.19  Score=33.50  Aligned_cols=32  Identities=28%  Similarity=0.515  Sum_probs=28.1

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +||+|.|..|..++..|.+. +.+|+++|..+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCcH
Confidence            68999999999999999994 789999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=93.17  E-value=0.15  Score=43.39  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++|+++..
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l  387 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADEL  387 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcC
Confidence            3899999999999999999985 8999999987654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.03  E-value=0.19  Score=41.61  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~  193 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASLF  193 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            789999999999999999996 9999999998654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=92.98  E-value=0.16  Score=43.67  Aligned_cols=35  Identities=31%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCcc
Confidence            3799999999999999999986 9999999998753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.87  E-value=0.19  Score=38.61  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCccc
Confidence            3799999999999999999986 8999999998653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=92.83  E-value=0.18  Score=44.37  Aligned_cols=34  Identities=21%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~l  347 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQL  347 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCcc
Confidence            789999999999999999996 9999999998764

>PRK13748 putative mercuric reductase; Provisional

Probab=92.76  E-value=0.19  Score=42.89  Aligned_cols=32  Identities=13%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|||+|..|+-+|..|++. |.+|.|+|+..
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~  303 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARL-GSKVTILARST  303 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence            699999999999999999996 99999999853

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=92.71  E-value=0.2  Score=42.60  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|.-+|..|+.. +++|.|+++++..
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccc
Confidence            3899999999999999999996 8999999998754

>PTZ00058 glutathione reductase; Provisional

Probab=92.71  E-value=0.19  Score=43.39  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~i  272 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRL  272 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccc
Confidence            3689999999999999999996 9999999998754

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.71  E-value=0.16  Score=37.59  Aligned_cols=33  Identities=24%  Similarity=0.430  Sum_probs=26.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.|||.|..|+.+|..|+++ |++|+-+|..+.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhC-CCEEEEEeCChH
Confidence            467999999999999999997 999999998765

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.71  E-value=0.18  Score=41.91  Aligned_cols=33  Identities=21%  Similarity=0.421  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.|||.|.+|..+|.-|.++ |++|.+.|+...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence            378999999999999999986 999999998754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=92.65  E-value=0.18  Score=45.14  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~l  175 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGL  175 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCch
Confidence            689999999999999999996 9999999998654

>PRK14694 putative mercuric reductase; Provisional

Probab=92.57  E-value=0.22  Score=41.67  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|||+|+.|+-+|..|++. +.+|.+++++.
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~  211 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR  211 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence            789999999999999999996 99999999753

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.50  E-value=0.23  Score=38.97  Aligned_cols=32  Identities=16%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|...|..|+++ |++|.++++.+
T Consensus         5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            588999999999999999996 99999998764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.49  E-value=0.22  Score=38.97  Aligned_cols=32  Identities=19%  Similarity=0.426  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..|+++ |++|.++++.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence            478999999999999999996 99999998764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=92.39  E-value=0.23  Score=39.65  Aligned_cols=32  Identities=31%  Similarity=0.467  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|...|..|+++ |++|.++++..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence            589999999999999999996 99999999864

>PRK14727 putative mercuric reductase; Provisional

Probab=92.34  E-value=0.23  Score=41.71  Aligned_cols=31  Identities=16%  Similarity=0.309  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .++|||+|..|+-+|..|++. |.+|.++++.
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~  220 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARS  220 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence            699999999999999999986 9999999985

>PLN02546 glutathione reductase

Probab=92.33  E-value=0.23  Score=42.82  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. +.+|.|+|+++..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~i  287 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKV  287 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEecccc
Confidence            3799999999999999999985 9999999998754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=92.28  E-value=0.25  Score=40.87  Aligned_cols=35  Identities=34%  Similarity=0.697  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-------------CCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-------------LDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-------------~g~~VlvLE~G~~~   65 (146)
                      .++|||+|+.|+-+|.+|++.             .+.+|.|+|+++..
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            799999999999999999862             36899999998764

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=91.82  E-value=0.3  Score=39.26  Aligned_cols=32  Identities=19%  Similarity=0.096  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~   63 (146)
                      .++|||+|..|+-+|..|.+. +.+ |.|+++.+
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence            689999999999999999885 776 99999865

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=91.81  E-value=0.27  Score=44.51  Aligned_cols=34  Identities=26%  Similarity=0.199  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~l  180 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPML  180 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence            589999999999999999996 9999999998753

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.78  E-value=0.29  Score=38.94  Aligned_cols=32  Identities=31%  Similarity=0.361  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|.-|...|..|+++ |++|.++.+..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence            378999999999999999996 99999999843

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.71  E-value=0.79  Score=37.53  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+++|||+|..|..+|..+... |.+|.++++..
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            45799999999999999999886 88999998753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=91.70  E-value=0.3  Score=41.29  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .++|||+|..|+-+|..|++. |.+|.++++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHh-CCcEEEEEec
Confidence            689999999999999999996 9999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.67  E-value=0.31  Score=38.41  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+-|||+|..|...|..++.+ |+.|.++|..+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            578999999999999999996 999999998765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=91.65  E-value=0.32  Score=40.62  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|||+|..|+-+|..|.+. |.+|.++++...
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCc
Confidence            3799999999999999999996 899999999854

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.61  E-value=0.38  Score=37.71  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.+.|||+|..|..+|..|+++ |++|.+.++.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            3588999999999999999996 99999998753

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.61  E-value=0.32  Score=40.29  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.++|+|+|..|..+|..|++. |++|.+.|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            35689999999999999999997 99999999864

>PTZ00052 thioredoxin reductase; Provisional

Probab=91.39  E-value=0.32  Score=41.21  Aligned_cols=31  Identities=26%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence            789999999999999999996 9999999974

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.28  E-value=0.42  Score=38.13  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|...|..|+++ |++|.++++..
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            589999999999999999996 99999999853

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=91.06  E-value=0.32  Score=38.86  Aligned_cols=33  Identities=27%  Similarity=0.539  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.|+|+|.-|+..|++|+++ |..|+++-|.+.
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence            478999999999999999997 799999988874

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.02  E-value=0.43  Score=35.78  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=29.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .-.++|||+|..|...|..|.+. |.+|.|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence            45799999999999999999996 8999999764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.81  E-value=0.44  Score=37.40  Aligned_cols=33  Identities=18%  Similarity=0.399  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.|||+|..|...|..|+++ |++|.++|+-+.
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~   37 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEE   37 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence            478999999999999999996 999999987643

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.73  E-value=0.44  Score=38.39  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+-|||+|..|...|..++.+ |+.|.+.|.-+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            588999999999999999996 99999999864

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=90.72  E-value=0.45  Score=40.52  Aligned_cols=36  Identities=25%  Similarity=0.151  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~   65 (146)
                      -++-|||+|.|++++|.-|-+   .+|.++.|||+-+..
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~   41 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP   41 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence            467899999999999999987   468899999997654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=90.63  E-value=0.38  Score=40.73  Aligned_cols=36  Identities=19%  Similarity=0.144  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHH--hCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSE--ELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~--~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..++.  ..|.+|.|+|+++..
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i  225 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI  225 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence            369999999999999976543  128999999998764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=90.62  E-value=0.5  Score=34.00  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=27.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEe
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE   60 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE   60 (146)
                      .-.++|||+|..|..-|..|.+. |.+|.|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDT-GAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence            45799999999999999999996 99999994

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.41  E-value=0.53  Score=40.41  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +-++||+|.|.-|..+|.+|.++ |++|+++|+.++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHH
Confidence            46899999999999999999996 999999998754

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=90.32  E-value=0.51  Score=37.18  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..|++. |+.|.++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            588999999999999999996 99999999864

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.00  E-value=0.56  Score=36.58  Aligned_cols=31  Identities=16%  Similarity=0.427  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+.|||+|..|...|..++++ |+.|+++|..
T Consensus         5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~   35 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDIS   35 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHC-CCceEEEeCC
Confidence            588999999999999999996 9999999854

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.96  E-value=0.66  Score=36.61  Aligned_cols=32  Identities=25%  Similarity=0.515  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|...|..|++. |++|.++++..
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            588999999999999999996 99999998643

>PRK12831 putative oxidoreductase; Provisional

Probab=89.96  E-value=0.55  Score=39.47  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|||+|..|.-+|..|.+. |.+|.++++...
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRL-GAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCEEEEEeecCc
Confidence            4899999999999999999996 888999998754

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.44  E-value=0.72  Score=36.52  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|..|..+|..|+++ |++|.+..+..
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            4688999999999999999996 99999998864

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.39  E-value=0.62  Score=38.49  Aligned_cols=32  Identities=41%  Similarity=0.591  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +++|+|.|..|..+|..|.++ |+.|.++|+.+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            589999999999999999996 99999999854

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=89.23  E-value=0.73  Score=34.42  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|+|.|..|..+|..|.+. |.+|++.+...
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEE-GAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            4699999999999999999996 99999988753

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=88.99  E-value=0.6  Score=38.53  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+-|||.|..|..+|..|+++ |++|+++++.+.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc-CCeEEEEECCHH
Confidence            478999999999999999996 999999998654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=88.89  E-value=0.69  Score=38.29  Aligned_cols=34  Identities=24%  Similarity=0.555  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +++|||+|.-|.++|+.|++....+|++.+|-..
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            6899999999999999999963389999988743

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=88.86  E-value=1  Score=31.34  Aligned_cols=35  Identities=14%  Similarity=0.286  Sum_probs=29.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~   63 (146)
                      ....++|||+|-+|..++..|.+. |.+ +.|+-|-.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence            356899999999999999999997 665 99988753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.82  E-value=0.58  Score=39.43  Aligned_cols=33  Identities=12%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|||+|..|+=.|.+|++. .++|.++.+++.
T Consensus       206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~  238 (461)
T PLN02172        206 VVVVIGNFASGADISRDIAKV-AKEVHIASRASE  238 (461)
T ss_pred             EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence            699999999999999999996 889999998654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=88.68  E-value=0.69  Score=38.41  Aligned_cols=34  Identities=15%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+.|||.|..|+.+|..|+++ |++|..+++.+.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHH
Confidence            3588999999999999999997 999999987544

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=88.65  E-value=0.8  Score=35.92  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|...|..|+++ |+.|.+.|+.+
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            488999999999999999996 99999998754

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=88.45  E-value=1  Score=32.48  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=28.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ...++|+|+|..|.-+|.-+... |.+|.++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence            46899999999999999988886 99999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=88.42  E-value=0.85  Score=38.06  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      -.++|||+|..|.-+|..|.+. |. +|.++++.+.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCc
Confidence            4799999999999999999986 66 8999998643

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=88.23  E-value=0.81  Score=39.09  Aligned_cols=33  Identities=24%  Similarity=0.455  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+-|||+|..|.-.|..++++ |+.|.+.|+.+.
T Consensus         7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e   39 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAE   39 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            588999999999999999996 999999987643

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=88.16  E-value=0.95  Score=34.02  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|||+|..|..-+..|.+. |.+|.|+....
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~~   42 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEEL   42 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            4799999999999999999996 99999997643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.98  E-value=0.9  Score=37.55  Aligned_cols=35  Identities=40%  Similarity=0.566  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|.|..|..+|..|.+. +..|+++|+-+.
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~-~~~v~vid~~~~  265 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKE-GYSVKLIERDPE  265 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHH
Confidence            45799999999999999999996 999999988653

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=87.95  E-value=0.98  Score=35.97  Aligned_cols=31  Identities=29%  Similarity=0.540  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC-cEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW-RVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G   62 (146)
                      .+.|||+|..|...|..|+.+ |+ .|+++|.-
T Consensus         3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~   34 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVV   34 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence            578999999999999999996 65 79999983

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=87.94  E-value=1  Score=33.89  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=28.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.||| +|..|..+|..|+++ |++|.+..+.+
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence            378997 799999999999996 89999988764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK04148 hypothetical protein; Provisional

Probab=87.89  E-value=0.61  Score=32.93  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.+++||-| .|..+|..|++. |+.|+.+|-.+.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence            469999999 887779999996 999999997755

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=87.88  E-value=1.1  Score=35.31  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~   65 (146)
                      ....++|||.|-.|+.+|..|++. | .++.|+|.....
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V~   66 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDVC   66 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEec
Confidence            467899999999999999999996 6 799999976543

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=87.88  E-value=1  Score=35.86  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~   64 (146)
                      .+.|||+|..|..+|..|+++ +  ..+.++|+...
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCch
Confidence            488999999999999999996 6  58999998653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=87.79  E-value=1.1  Score=33.59  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=30.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G   62 (146)
                      ....+.|||.|--|+..|..|++. |. ++.++|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            456899999999999999999996 77 69998887

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=87.41  E-value=1.1  Score=36.35  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=30.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      ....++|||.|.-|+.+|..|++. |. ++.|+|...
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence            456899999999999999999996 76 888898875

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=87.15  E-value=1  Score=37.45  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+-|||+|..|++.|.-|++. ||.|+.+|--..
T Consensus         2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~~   34 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDES   34 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCHH
Confidence            467999999999999999997 999999998654

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=87.03  E-value=0.65  Score=30.80  Aligned_cols=33  Identities=30%  Similarity=0.371  Sum_probs=28.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ...++|||+|..|..-+..|.+. |.+|.|+...
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence            45799999999999999999996 8999999776

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=86.99  E-value=1  Score=35.18  Aligned_cols=32  Identities=25%  Similarity=0.187  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|..+|..|.++ |++|.++++.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            478999999999999999996 89999998754

>KOG2852|consensus

Probab=86.91  E-value=0.27  Score=39.49  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhC-----CCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEEL-----DWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~-----g~~VlvLE~G~~   64 (146)
                      .-.++|||+|..|+-+|+-|++++     ...+.++|...-
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I   50 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI   50 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc
Confidence            368999999999999999999963     278999998643

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=86.90  E-value=1.7  Score=27.72  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=28.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      .-.++|+|.|..|..++..|.+..+.++.+.++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            457999999999999999999854678888887

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=86.74  E-value=1.8  Score=29.85  Aligned_cols=35  Identities=20%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~   65 (146)
                      ..++|+|.|.-|+.+|..|++. |. ++.|+|.....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIVE   38 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB-
T ss_pred             CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCccee
Confidence            4689999999999999999997 55 78999887543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=86.70  E-value=1  Score=37.69  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+|+|||+|.+|.-.|.+|++. +.+|.++=|.+..
T Consensus       176 KrV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~~  210 (443)
T COG2072         176 KRVLVIGAGASAVDIAPELAEV-GASVTLSQRSPPH  210 (443)
T ss_pred             CeEEEECCCccHHHHHHHHHhc-CCeeEEEecCCCc
Confidence            4899999999999999999997 7999999888764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=86.46  E-value=1.2  Score=39.72  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~~   64 (146)
                      -.++|||+|..|.-+|..+.+. |.+ |.++++.+.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCc
Confidence            3799999999999999999886 776 999998754

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=86.32  E-value=1.5  Score=35.52  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=31.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      .....++|||+|--|+.+|..|++. |. ++.++|...
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence            3467899999999999999999997 66 899999864

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.23  E-value=1.1  Score=39.88  Aligned_cols=34  Identities=15%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.+.|||+|..|.-.|..++.+ |++|.++|....
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            3588999999999999999996 999999998754

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=86.22  E-value=1.2  Score=38.01  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+-|||+|..|.-.|..|+++ |+.|.+.|+.+.
T Consensus         9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e   41 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG   41 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            478999999999999999996 999999987654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=86.13  E-value=1.3  Score=36.89  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|.|+.|..+|..+... |.+|+++|..+.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChh
Confidence            34789999999999999999886 889999988654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=86.07  E-value=1  Score=39.20  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +-++||+|.|..|-.+|..|.++ ++++++||..++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~  434 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMAN-KMRITVLERDIS  434 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhC-CCCEEEEECCHH
Confidence            46899999999999999999996 999999998765

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=86.01  E-value=2.4  Score=32.31  Aligned_cols=34  Identities=24%  Similarity=0.510  Sum_probs=29.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC---cEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW---RVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~---~VlvLE~G~   63 (146)
                      .-.++|+|+|-+|..+|..|.+. |.   ++.++++-+
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence            34799999999999999999986 65   599999974

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=85.97  E-value=1.3  Score=38.79  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +-++||+|.|..|-..|..|.++ +.++++||+.++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~  434 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPD  434 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHH
Confidence            46899999999999999999996 999999999865

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.91  E-value=0.95  Score=37.40  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .-|+.|||+|-+|.-+|..|+-- -..|.+||=.+..
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~eL  389 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEL  389 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhh-hheeeeeecchhh
Confidence            34999999999999999999874 5688999987653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.91  E-value=1.3  Score=36.73  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|+|+|..|..+|..|++. |.+|.+.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            479999999999999999996 99999998764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=85.84  E-value=1.7  Score=31.13  Aligned_cols=32  Identities=19%  Similarity=0.404  Sum_probs=26.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+-+||-|..|..+|.+|.++ |++|.+.++-+
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~   34 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP   34 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred             EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence            467999999999999999996 99999999774

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=85.62  E-value=1.3  Score=37.54  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+-|||+|..|...|..|+++ |++|.+.++.+
T Consensus         6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            478999999999999999996 99999998754

>KOG3923|consensus

Probab=85.62  E-value=1.3  Score=35.62  Aligned_cols=38  Identities=18%  Similarity=0.091  Sum_probs=29.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH------hCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE------ELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~------~~g~~VlvLE~G~~~   65 (146)
                      ...++.|||+|.-|++.|..+.+      .|..+|.+++-...+
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e   45 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE   45 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence            45689999999999999966655      245688888776554

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=85.47  E-value=1.3  Score=39.51  Aligned_cols=35  Identities=11%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      --.+.|||+|..|.-.|..++.+ |+.|.++|....
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~  347 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQH  347 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            34688999999999999999996 999999997643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=85.39  E-value=1.9  Score=31.46  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=30.5

Q ss_pred             CCcccEEEECCCH-HHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGS-AGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~-aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .....++|||+|- .|..+|..|.++ |.+|.++.+-.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~~   78 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSKT   78 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECCc
Confidence            4567999999996 699899999996 88899998863

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=85.17  E-value=1.8  Score=34.31  Aligned_cols=33  Identities=24%  Similarity=0.512  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~   64 (146)
                      .+.|||+|..|..+|..|+.. +  ..+.++++...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence            478999999999999999986 6  57999998544

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG2495|consensus

Probab=85.00  E-value=0.48  Score=39.79  Aligned_cols=37  Identities=38%  Similarity=0.621  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-------------CCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-------------LDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-------------~g~~VlvLE~G~~~   65 (146)
                      -..++|||+||.|.-+|.+|+.-             ...+|.++|+.+..
T Consensus       218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i  267 (491)
T KOG2495|consen  218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI  267 (491)
T ss_pred             eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence            46999999999999999999851             24489999999853

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=84.98  E-value=1.6  Score=34.47  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...+.|+|.|..|..+|..|... |.+|.+.++...
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~~  185 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSAL-GARVFVGARSSA  185 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            45799999999999999999986 899999998643

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>KOG2304|consensus

Probab=84.93  E-value=1.3  Score=34.53  Aligned_cols=38  Identities=26%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ......|-|||+|..|+-.|+..+.. |+.|.|+++..+
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~s-g~~V~l~d~~~~   45 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATS-GLNVWLVDANED   45 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhc-CCceEEecCCHH
Confidence            34456899999999999999999885 999999998765

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=84.62  E-value=2  Score=33.10  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=29.5

Q ss_pred             EEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          32 FIIVG-GGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        32 ~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++|.| +|+-|..++.+|.++ |++|..+.+....
T Consensus         3 ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~   36 (314)
T COG0451           3 ILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDG   36 (314)
T ss_pred             EEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCcc
Confidence            88999 499999999999997 9999999987553

>PRK08017 oxidoreductase; Provisional

Probab=84.37  E-value=2  Score=32.25  Aligned_cols=32  Identities=25%  Similarity=0.283  Sum_probs=28.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|.|+ |.-|..+|.+|.++ |.+|+++.+..
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~   36 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRR-GYRVLAACRKP   36 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4899998 99999999999996 89999987753

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=84.27  E-value=2.2  Score=29.61  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      .++|||.|--|+.+|..|++. |. ++.+++....
T Consensus         1 ~VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARS-GVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCc
Confidence            378999999999999999996 65 7899987754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=84.19  E-value=1.6  Score=33.18  Aligned_cols=30  Identities=30%  Similarity=0.514  Sum_probs=26.9

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +.|+|.|--|..+|.+|+++ |+.|.+--+.
T Consensus         4 ~~i~GtGniG~alA~~~a~a-g~eV~igs~r   33 (211)
T COG2085           4 IAIIGTGNIGSALALRLAKA-GHEVIIGSSR   33 (211)
T ss_pred             EEEeccChHHHHHHHHHHhC-CCeEEEecCC
Confidence            68999999999999999996 9999998444

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=84.16  E-value=2  Score=31.47  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=28.6

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .-.++|+|+ |..|..+|..|++. +.+|.++.|.
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            457999996 99999999999986 8899998765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=84.07  E-value=1.9  Score=34.04  Aligned_cols=32  Identities=31%  Similarity=0.522  Sum_probs=27.4

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      +.|||+|..|..+|..|+.+ +. .|.++|....
T Consensus         1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence            46999999999999999985 65 9999998644

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=83.62  E-value=1.7  Score=33.98  Aligned_cols=31  Identities=16%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +-|||.|..|..+|..|++. |++|.+.++.+
T Consensus         2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~   32 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP   32 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            67999999999999999996 99999998864

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=83.56  E-value=2.8  Score=26.77  Aligned_cols=32  Identities=25%  Similarity=0.480  Sum_probs=27.1

Q ss_pred             EEEECCCHHHHHHHHHHHHhCC---CcEEEE-ecCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELD---WRVLLI-EAGGD   64 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g---~~VlvL-E~G~~   64 (146)
                      +.|||+|-.|..++..|.+. +   .+|.++ ++.++
T Consensus         2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSHH
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcHH
Confidence            56899999999999999996 7   888866 77654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=83.50  E-value=1.8  Score=31.54  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=28.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..--.++|+|-|..|..+|.+|+.. |.+|.|.|..+.
T Consensus        21 l~Gk~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DPi   57 (162)
T PF00670_consen   21 LAGKRVVVIGYGKVGKGIARALRGL-GARVTVTEIDPI   57 (162)
T ss_dssp             -TTSEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSHH
T ss_pred             eCCCEEEEeCCCcccHHHHHHHhhC-CCEEEEEECChH
Confidence            3345799999999999999999996 999999998764

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=83.38  E-value=2.7  Score=29.94  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             EEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          32 FIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++|+|+ |..|..++.+|.++ +++|.++=|.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~   33 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS   33 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch
Confidence            689996 99999999999997 899999988755

...

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=83.19  E-value=2.4  Score=33.45  Aligned_cols=36  Identities=31%  Similarity=0.326  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..-++|||.|.-|...|..|.++ |+.|-++.+....
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~   38 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSA   38 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcH
Confidence            34689999999999999999996 9999999887653

>PRK06223 malate dehydrogenase; Reviewed

Probab=83.13  E-value=2.3  Score=33.53  Aligned_cols=32  Identities=31%  Similarity=0.512  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..++.. +. .|.++|.-.
T Consensus         4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~   36 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE   36 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence            689999999999999999985 54 899999743

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=83.06  E-value=1.8  Score=38.78  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.+-|||+|..|.-.|..++.+ |+.|.++|..+.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhC-CCcEEEecCCHH
Confidence            4688999999999999999996 999999997654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=82.66  E-value=2.4  Score=34.47  Aligned_cols=30  Identities=23%  Similarity=0.312  Sum_probs=27.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC--------CcEEEEec
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD--------WRVLLIEA   61 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g--------~~VlvLE~   61 (146)
                      .+.|||+|.-|..+|..|+++ +        ++|.+..+
T Consensus         1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~   38 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF   38 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence            367999999999999999996 7        99999987

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=82.66  E-value=3.1  Score=30.31  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=27.8

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      ++|||.|-.|+.+|..|++. |. ++.++|...
T Consensus         2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~   33 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV   33 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence            78999999999999999996 66 599999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=82.51  E-value=2.5  Score=33.49  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ....++|||.|..|..++..|.+. |.+|.+.++-.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            356899999999999999999986 89999998874

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=82.44  E-value=2.2  Score=36.21  Aligned_cols=34  Identities=15%  Similarity=0.274  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhC-CCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G~~   64 (146)
                      .+.|||.|..|+.+|..|+++. +++|+.+|....
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            4889999999999999999852 578999987654

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=82.44  E-value=2.4  Score=33.36  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      -.++|||+|-+|..+|..|++. |. ++.|++|-.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence            4799999999999999999986 64 799998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=82.19  E-value=2.5  Score=37.15  Aligned_cols=35  Identities=14%  Similarity=0.127  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|||+|..|.-+|..+.+....+|.|+++.+.
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~  358 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR  358 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            37899999999999999988862346999998754

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=82.11  E-value=3  Score=33.49  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      ..+.|||+|..|..+|..++.. +. ++.|+|.-+.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence            4689999999999999999885 74 8999997554

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=82.02  E-value=2.3  Score=33.52  Aligned_cols=32  Identities=16%  Similarity=0.364  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ++-|||.|..|..+|..|+++ |++|.+.++.+
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~-G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQ-GHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            578999999999999999996 99999998764

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=82.01  E-value=2.6  Score=32.70  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|+|+|-.|..+|..|++. |.+|.++.|..
T Consensus       118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~  150 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRTV  150 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3689999999999999999996 88999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=82.00  E-value=1.1  Score=31.31  Aligned_cols=36  Identities=22%  Similarity=0.390  Sum_probs=27.7

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ...+..+-|||+|..|..++..|.++ |+.|.-+...
T Consensus         7 ~~~~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~sr   42 (127)
T PF10727_consen    7 QAARLKIGIIGAGRVGTALARALARA-GHEVVGVYSR   42 (127)
T ss_dssp             -----EEEEECTSCCCCHHHHHHHHT-TSEEEEESSC
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeC
Confidence            44578999999999999999999996 9988777554

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=81.84  E-value=2.6  Score=35.10  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|.|..|..+|..+... |.+|+++|..+.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChh
Confidence            44799999999999999999986 899999987653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=81.73  E-value=2.5  Score=33.60  Aligned_cols=37  Identities=14%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..-.++|||+|..|..++..|.+....+|.++++...
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~  213 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYE  213 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            3557999999999999999998853578999988643

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG1336|consensus

Probab=81.73  E-value=2.5  Score=35.88  Aligned_cols=37  Identities=22%  Similarity=0.136  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .-.++++|+|..|.-+|..|... +++|.+++..+..-
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~-~~~VT~V~~e~~~~  249 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSK-AKSVTVVFPEPWLL  249 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhc-CceEEEEccCccch
Confidence            44699999999999999999996 99999999987653

>PRK07774 short chain dehydrogenase; Provisional

Probab=81.71  E-value=3  Score=31.14  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=28.7

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..++|.|+ |.-|..+|..|.++ |.+|+++.+..
T Consensus         7 k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~   40 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALARE-GASVVVADINA   40 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            35899997 88999999999996 99999998753

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=81.69  E-value=2.1  Score=35.04  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=29.3

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.+.||| .|..|..+|..|.++ |+.|.+.++.+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~-G~~V~~~d~~~  132 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLS-GYQVRILEQDD  132 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHC-CCeEEEeCCCc
Confidence            4688999 899999999999996 99999999753

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=81.61  E-value=3.5  Score=30.72  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      ....++|||.|--|+.+|..|++. |. ++.++|...
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence            467899999999999999999997 64 899998874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07326 short chain dehydrogenase; Provisional

Probab=81.58  E-value=2.7  Score=31.08  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=27.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      --++|+|+ |.-|..+|.+|.++ |.+|+++.+.+
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~   40 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAE-GYKVAITARDQ   40 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCH
Confidence            45788885 88999999999996 99999998754

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=81.54  E-value=2.9  Score=35.32  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|.-+|..+.+....+|.++|..+..
T Consensus       284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~  319 (485)
T TIGR01317       284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP  319 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence            479999999999998877766545689999987653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=81.45  E-value=2.8  Score=33.44  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=27.4

Q ss_pred             EEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP   65 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~   65 (146)
                      ++|||+|.+|..+|..|.+ .++..+.++++....
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~   35 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY   35 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence            5899999999999998887 346788877777554

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=81.43  E-value=2.7  Score=35.24  Aligned_cols=35  Identities=26%  Similarity=0.243  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|.|..|..+|..|... |.+|++.|..+.
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~  246 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPI  246 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCch
Confidence            44799999999999999999986 889999987653

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=81.16  E-value=5.5  Score=35.48  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.+.|||+|..|.-.|..++...|+.|.++|..+.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~  344 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ  344 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46889999999999999999324999999998643

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=80.91  E-value=4.7  Score=33.79  Aligned_cols=50  Identities=16%  Similarity=0.305  Sum_probs=36.8

Q ss_pred             hhhhccccc--cccCCcccEEEECCCHHHHHHHHHHHHhCCC---cEEEEecCCCC
Q psy3408          15 VFTVVSTAE--DNISGKFDFIIVGGGSAGAVLANRLSEELDW---RVLLIEAGGDP   65 (146)
Q Consensus        15 ~~~~~~~~~--~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~---~VlvLE~G~~~   65 (146)
                      ++++.++..  ........+++.|+|.+|+.+|..|... |.   ++.++|+-+..
T Consensus       183 lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~-g~~~~~i~~~D~~G~l  237 (432)
T COG0281         183 LAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAA-GVKEENIFVVDRKGLL  237 (432)
T ss_pred             HHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHh-CCCcccEEEEecCCcc
Confidence            444555542  3334567899999999999999999985 54   79999997543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=80.83  E-value=2.7  Score=38.66  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -+++|||+|..|.=+|..+.+. |.+|.++.+.+.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~~  481 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRTK  481 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEecCc
Confidence            4799999999999999999886 889999998753

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=80.77  E-value=2.2  Score=34.69  Aligned_cols=33  Identities=18%  Similarity=0.455  Sum_probs=26.1

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      ++|+|+|..|..++..|++.... +|+|.++...
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~   34 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE   34 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH
Confidence            68999999999999999997445 8899888654

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02572 UDP-sulfoquinovose synthase

Probab=80.72  E-value=3.5  Score=34.47  Aligned_cols=31  Identities=26%  Similarity=0.529  Sum_probs=27.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      -.++|.|+ |+-|..++.+|.++ |++|.++++
T Consensus        48 k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d~   79 (442)
T PLN02572         48 KKVMVIGGDGYCGWATALHLSKR-GYEVAIVDN   79 (442)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEec
Confidence            36899996 99999999999996 999999864

>PRK06057 short chain dehydrogenase; Provisional

Probab=80.72  E-value=3.3  Score=31.22  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|+|+ |.-|..+|.+|+++ |.+|.++.+...
T Consensus         8 ~~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~~   42 (255)
T PRK06057          8 RVAVITGGGSGIGLATARRLAAE-GATVVVGDIDPE   42 (255)
T ss_pred             CEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHH
Confidence            46899998 78899999999996 999999987543

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=80.69  E-value=1.4  Score=35.56  Aligned_cols=23  Identities=30%  Similarity=0.167  Sum_probs=20.0

Q ss_pred             HHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          43 VLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        43 ~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ++|++|+++ |++|+|||+.+..+
T Consensus         1 ~AA~~L~~~-G~~v~vlEa~~~~G   23 (419)
T TIGR03467         1 SAAVELARA-GARVTLFEARPRLG   23 (419)
T ss_pred             ChHHHHHhC-CCceEEEecCCCCC
Confidence            378999996 99999999998764

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=80.61  E-value=6.7  Score=34.93  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.+.|||+|..|.-.|..++...|+.|.++|..+.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46889999999999999998424999999998753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=80.54  E-value=3.4  Score=33.04  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=31.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      |++|||+|-+..--|..|++- ..+|.++-|++...
T Consensus       145 ~v~ViGgG~sAve~Al~L~~~-a~~Vtlv~r~~~~r  179 (305)
T COG0492         145 DVVVIGGGDSAVEEALYLSKI-AKKVTLVHRRDEFR  179 (305)
T ss_pred             eEEEEcCCHHHHHHHHHHHHh-cCeEEEEecCcccC
Confidence            999999999999999999995 88899999987753

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=80.50  E-value=3.7  Score=28.53  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=28.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.++|||.|..|...|..|.+....+|.+.++..
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            34689999999999999999985237899988754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK10537 voltage-gated potassium channel; Provisional

Probab=80.45  E-value=3.1  Score=34.48  Aligned_cols=33  Identities=24%  Similarity=0.138  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +-++||+|.|.-|..++.+|.++ +.+|+++|..
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~-g~~vvVId~d  272 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQR-GQAVTVIVPL  272 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHC-CCCEEEEECc
Confidence            45799999999999999999986 8999999964

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=80.32  E-value=3.5  Score=31.74  Aligned_cols=37  Identities=16%  Similarity=0.155  Sum_probs=30.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ....++|||.|--|+.+|..|+..+-.++.|+|....
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            4679999999999999999999973347888877643

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.27  E-value=3  Score=34.93  Aligned_cols=32  Identities=19%  Similarity=0.187  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|+|.|.+|..+|..|.+. |.+|.+.|+.+
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence            689999999999999999986 99999999865

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=80.17  E-value=2.7  Score=33.80  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+-|||+|..|.-.|..++. .|+.|.+.|....
T Consensus         5 kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~   37 (307)
T COG1250           5 KVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPE   37 (307)
T ss_pred             EEEEEcccchhHHHHHHHhh-cCCceEEEeCCHH
Confidence            57799999999999999999 5999999998743

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.13  E-value=3.6  Score=34.17  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+|.|..|..+|..|+++ |.+|.+.|....
T Consensus         7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~   39 (445)
T PRK04308          7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK   39 (445)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            589999999999999999996 999999997654

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=80.07  E-value=3.4  Score=32.30  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~   64 (146)
                      .-.++|+|+|-+|..++..|.+. | .+|.|+.|-..
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~~  158 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDL-GVAEITIVNRTVE  158 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCHH
Confidence            34789999999999999999986 7 78999988643

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=80.06  E-value=3.5  Score=32.51  Aligned_cols=33  Identities=9%  Similarity=0.282  Sum_probs=27.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~   63 (146)
                      -.++|+|+|=+|..+|..|++. |.+ |.|+.|..
T Consensus       127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence            4689999999999999999986 765 99998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		1e-13
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		2e-10
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		2e-06
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		2e-05
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		1e-04
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		1e-04
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		2e-04

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 31  DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL-PGYWFNLLKSRQDWAYRT 89
           D +IVGGGSAG++LA RLSE+ D RVLLIEAG +P +     P  W  L     DW YRT
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRT 78
Query: 90  QPDNRMFFGLENRVNHWPRGKGLGG 114
           +       G   R +HW RG+ +GG
Sbjct: 79  EAQ----AGTAGRAHHWARGRLIGG 99

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 30  FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG-GDPPEASEL--PGYWFNLLKSRQDWA 86
           FDF+IVGGG+AG  +A RL+E  +  VL++EAG G+P +  E+  P    +L  S+ DWA
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 87  YRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           Y+T    R  +    + N   RGK LGG
Sbjct: 67  YKTTMVRRDDYERIEKPNT--RGKTLGG 92

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 28  GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE--ASELPGYWFNLL-KSRQD 84
             FD+++VG G+AG V+A RL+E+ D  VL++EAG        +E P     L+  S  D
Sbjct: 1   ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFD 60
Query: 85  WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           W Y T        G   R   +PRG+ LGG
Sbjct: 61  WNYTTTAQ----AGYNGRSIAYPRGRMLGG 86

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 26  ISGK-FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG---GDPPEASELPGYWFNLLKS 81
           ++GK +D+II GGG  G  +A +L+E    +VL+IE G    +     E P  +  +  +
Sbjct: 20  VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGT 79
Query: 82  RQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
             D  Y T P       + NR N+   GKGLGG
Sbjct: 80  TVDQNYLTVP------LINNRTNNIKAGKGLGG 106

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 16 FTVVSTAED----NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEA 68
          F+ +S A D     + G +D++IVGGG++G  LA  LSE+  ++VL++E G  P   P  
Sbjct: 9  FSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNV 66
Query: 69 SELPGYWFNLLK 80
              G+ +NL +
Sbjct: 67 LTADGFVYNLQQ 78

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 16 FTVVSTAED----NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEA 68
          F+ +S A D     + G +D++IVGGG++G  LA  LSE+  ++VL++E G  P   P  
Sbjct: 9  FSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNV 66
Query: 69 SELPGYWFNLLK 80
              G+ +NL +
Sbjct: 67 LTADGFVYNLQQ 78

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 13/70 (18%)
Query: 16 FTVVSTAED----NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL 71
          F+ +S A D     + G +D++IVGGG++G  LA  LSE+  ++VL++E G        L
Sbjct: 9  FSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERG-------TL 59
Query: 72 PGYWFNLLKS 81
          P  + NLL S
Sbjct: 60 PTAYPNLLTS 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	1e-35
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	2e-35
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	5e-34
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	1e-33
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	1e-32
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	6e-32
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	6e-31
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	1e-26
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	2e-10
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	8e-09
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	1e-08
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	2e-07
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	3e-07
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-06
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	2e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	4e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	5e-06
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-05
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	2e-05
3atr_A	453	Conserved archaeal protein; saturating double bond	3e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	8e-05
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	3e-04
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	5e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	6e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	8e-04

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  128 bits (323), Expect = 1e-35
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 18  VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL---PGY 74
           ++S         +D+II GGG  G  +A +L+E    +VL+IE G        +   P  
Sbjct: 13  LLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNA 72

Query: 75  WFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           +  +  +  D  Y T P       + NR N+   GKGLGG
Sbjct: 73  YGQIFGTTVDQNYLTVP------LINNRTNNIKAGKGLGG 106

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  127 bits (321), Expect = 2e-35
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 17  TVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL---PG 73
           ++++  +D      D+II GGG  G   A RL+E  +  VL+IE+G    +   +     
Sbjct: 7   SLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLN 66

Query: 74  YWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
            + ++  S  D AY T           N+      G GLGG
Sbjct: 67  AYGDIFGSSVDHAYETVEL-----ATNNQTALIRSGNGLGG 102

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  123 bits (311), Expect = 5e-34
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 28  GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG--DPPEASELP-GYWFNLLKSRQD 84
             FD+++VG G+AG V+A RL+E+ D  VL++EAG   +    +E P      +  S  D
Sbjct: 1   ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFD 60

Query: 85  WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           W Y T        G   R   +PRG+ LGG
Sbjct: 61  WNYTTTAQA----GYNGRSIAYPRGRMLGG 86

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  122 bits (309), Expect = 1e-33
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 30  FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL---PGYWFNLLKSRQDWA 86
           FDF+IVGGG+AG  +A RL+E  +  VL++EAG   PE       P    +L  S+ DWA
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66

Query: 87  YRTQPDNRMFFGLENRVNHWP--RGKGLGG 114
           Y+T          +      P  RGK LGG
Sbjct: 67  YKTTMVR----RDDYERIEKPNTRGKTLGG 92

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  119 bits (300), Expect = 1e-32
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 18  VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELP---GY 74
                +  + G +D++IVGGG++G  LA  LSE   ++VL++E G  P     +    G+
Sbjct: 15  AYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGF 72

Query: 75  WFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
            +NL   +Q+   +T  +      +        RG+ LGG
Sbjct: 73  VYNL---QQEDDGKTPVER----FVSEDGIDNVRGRVLGG 105

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  117 bits (296), Expect = 6e-32
 Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 20  STAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG-DPPEASELPGYWFNL 78
           + A+   +   D +IVGGGSAG++LA RLSE+ D RVLLIEAG          P  W  L
Sbjct: 8   TRAKVEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPAL 67

Query: 79  LKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
                DW YRT+       G   R +HW RG+ +GG
Sbjct: 68  QGRSYDWDYRTEAQA----GTAGRAHHWARGRLIGG 99

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  114 bits (289), Expect = 6e-31
 Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG-DPPEASELP-GYWFNLLKSRQDWA 86
           +FD+I+VGGGSAGA +A RLSE+    V L+EAG  D      L    W  LL+S  DW 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72

Query: 87  YRTQPDNRMFFGLENRVNHWPRGKGLGG 114
           Y  +P         N      R K +GG
Sbjct: 73  YPIEPQENG-----NSFMRHARAKVMGG 95

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  102 bits (257), Expect = 1e-26
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 27  SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD--------PPEASELPGYWFNL 78
           +  +D+IIVG G  G + A+RLSE    +VLL+E GG                       
Sbjct: 5   ATPYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKF 63

Query: 79  LKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
                  +  T  +         +      G  +GG
Sbjct: 64  DIPGLFESLFTDSNP----FWWCKDITVFAGCLVGG 95

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 24/115 (20%)

Query: 30  FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG----GDPPEASELPGYWFNLLKS---- 81
              +++G G   AV A RL E    + L++E G       P+ +   G      +S    
Sbjct: 6   VPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 64

Query: 82  --------RQDWAYRTQPDNRMFFGLENRVNH----WPRGKGLGGFPATGLIYSN 124
                      W      +   + G+ +RVN+       G+G+GG     L+   
Sbjct: 65  NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGG---GSLVNGG 116

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG----DPPEASELPGYWFNLLKSRQD 84
           +   +++G G  GAV A RL++       ++E G        +     G      +S   
Sbjct: 11  RVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69

Query: 85  WAYRTQP-DNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHV 126
                QP  N M FG+   ++ +        F    +     V
Sbjct: 70  ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGV 112

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
          +FD  +VG G  G  +A R++ +LD RVL++E
Sbjct: 7  RFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 20 STAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
          +T E   S  FD++IVG G AG+VLA RL+     RVL+++ 
Sbjct: 20 TTNEQQESKGFDYLIVGAGFAGSVLAERLA-SSGQRVLIVDR 60

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWF-NLLKSRQDWAY 87
           K+D +IVG G  G   A  L     ++V + + G    ++    G    N ++ +++   
Sbjct: 46  KYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIG--EIDSGLKIGAHKKNTVEYQKNIDK 102

Query: 88  RTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNH 125
                      +   VN                 +  +
Sbjct: 103 FVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRN 140

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
              +IVG G +GAV+  +L+ E   +V +I+ 
Sbjct: 3  SKKILIVGAGFSGAVIGRQLA-EKGHQVHIIDQ 34

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 32/114 (28%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG--------------------- 63
             D +++G G  G   A RL++      +++++    GG                     
Sbjct: 10  SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIF 69

Query: 64  -DPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFP 116
                  +        L    DW          +   + +   +P    +   P
Sbjct: 70  SHYKYFDD---CLDEALPKEDDWYTHQ---RISYVRCQGQWVPYPFQNNISMLP 117

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
          +D+IIVG G  GAV AN L  +L+ +VL+IE 
Sbjct: 2  YDYIIVGSGLFGAVCANELK-KLNKKVLVIEK 32

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 30  FDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGDPPEASELPGYWFN 77
            D IIVG GS+G   A  +++   D +V +IE+   P   S L G  F+
Sbjct: 66  SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFS 114

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 29  KFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPPE--ASELPGYWFNLLKSRQDW 85
            FD +++G G  GA  A  L +      +LL+E GG P E  A+ L    +         
Sbjct: 36  AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQ 95

Query: 86  AYRTQPDNRMFFGLE 100
             + +       G  
Sbjct: 96  EAQAEWTREQLLGAL 110

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
          K+D +I+GGG AG+  A +LS     ++LL+++    
Sbjct: 6  KYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPWN 41

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFN 77
           D ++VG GSAG   A  +S+  + +V +IE    P   + L G  F+
Sbjct: 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFS 87

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
           D +I G G  GA+LA  L      RV+++E        +
Sbjct: 7  IDVLINGCGIGGAMLAYLLG-RQGHRVVVVEQARRERAIN 45

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
          K D +++G G AG V A+ +++   ++V ++E    P
Sbjct: 5  KVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQKFP 40

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG 63
              +I+G G  G   A RL+E       L E     GG
Sbjct: 9  TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 30  FDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW 85
            D +IVG GS G   A  LS    D R+ ++EAG  P   + L G  F+ +  R+  
Sbjct: 80  TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPA 136

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
           FD I++GGG  G+ LA+ ++     RVLL+E    P
Sbjct: 7  VFDLIVIGGGPGGSTLASFVAMR-GHRVLLLEREAFP 42

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	99.92
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.9
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	99.9
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.84
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	99.83
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.79
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.77
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.74
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.73
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.58
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.01
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.9
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.77
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.7
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.63
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.61
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.6
3dme_A	369	Conserved exported protein; structural genomics, P	98.58
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.55
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.54
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.52
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.52
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.51
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.49
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.47
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.47
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.45
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.44
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.43
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.43
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.42
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.42
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.4
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.4
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.4
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.4
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.39
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.39
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.38
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.37
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.37
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.36
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.34
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.34
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.34
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.34
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.34
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.33
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.33
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.33
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.33
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.32
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.32
3atr_A	453	Conserved archaeal protein; saturating double bond	98.32
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.32
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.31
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.31
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.31
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.3
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.3
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.3
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.3
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.3
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.3
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.3
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.29
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.28
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.28
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.28
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.28
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.28
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.27
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.27
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.27
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.27
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.27
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.27
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.26
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.26
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.26
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.25
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.25
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.25
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.25
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.25
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.24
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.24
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.23
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.23
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.23
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.23
4dna_A	463	Probable glutathione reductase; structural genomic	98.22
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.22
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.22
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.22
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.22
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.22
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.21
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.21
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.21
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.21
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.2
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.19
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.19
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.19
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.19
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.18
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.18
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.17
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.17
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.17
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.16
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.16
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.16
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.16
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.15
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.15
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.14
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.14
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.13
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.13
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.13
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.13
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.13
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.13
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.12
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.12
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.12
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.12
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.12
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.12
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.12
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.11
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.11
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.1
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.1
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.1
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.1
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.1
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.1
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.1
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.1
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.1
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.1
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.09
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.09
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.09
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.08
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.08
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.07
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.07
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.07
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.06
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.06
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.05
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.05
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.05
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.04
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.04
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.03
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.03
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.02
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.01
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.01
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.01
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.0
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.98
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.97
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.96
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.94
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.92
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.9
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.9
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.89
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.88
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.87
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.84
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.82
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.81
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.8
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.78
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.78
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.77
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.76
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.75
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.75
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.75
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.75
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.73
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.73
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.72
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.71
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.7
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.7
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.7
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.7
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.69
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.61
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.6
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.58
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.57
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.56
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.55
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.51
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.46
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.33
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.33
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.26
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.25
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.21
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.18
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.1
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.12
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.12
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.85
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.85
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.79
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.79
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.75
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.66
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.53
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.5
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.49
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.46
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	95.36
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.35
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.25
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	95.19
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.04
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	94.94
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	94.79
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.73
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.69
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	94.62
1ojt_A	482	Surface protein; redox-active center, glycolysis,	94.56
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.51
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	94.48
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.46
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.46
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	94.46
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.4
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	94.38
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	94.32
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	94.31
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	94.23
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.19
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.14
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.13
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	94.13
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.09
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.03
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.03
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	93.98
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	93.96
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.91
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	93.86
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	93.84
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	93.82
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	93.73
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	93.71
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	93.69
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	93.68
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	93.64
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.62
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	93.61
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.55
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	93.53
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	93.52
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.42
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	93.39
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	93.38
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	93.35
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.25
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.25
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	93.24
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.13
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.1
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	92.97
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.93
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	92.92
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.81
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.8
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	92.77
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.67
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	92.66
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	92.61
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	92.58
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.54
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.53
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.43
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	92.4
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	92.39
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	92.38
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.32
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.21
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	92.02
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	91.96
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	91.91
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	91.88
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	91.83
1fec_A	490	Trypanothione reductase; redox-active center, oxid	91.68
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	91.64
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	91.57
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.53
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.51
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	91.42
3r9u_A	315	Thioredoxin reductase; structural genomics, center	91.38
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	91.19
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	91.16
4dna_A	463	Probable glutathione reductase; structural genomic	91.11
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	91.08
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.85
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	90.8
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	90.77
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	90.7
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	90.42
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	90.41
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	90.29
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	90.27
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.21
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	90.2
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	89.98
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	89.98
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	89.97
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	89.97
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	89.93
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	89.91
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	89.88
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.84
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	89.61
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	89.6
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	89.44
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	89.15
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	89.13
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.13
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	89.09
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	89.01
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.95
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	88.94
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	88.86
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	88.86
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	88.83
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	88.79
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	88.78
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	88.76
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	88.71
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	88.67
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	88.65
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	88.64
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	88.58
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.52
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	88.51
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	88.45
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	88.34
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	88.23
3qha_A	296	Putative oxidoreductase; seattle structural genomi	88.23
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	88.21
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	88.16
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	88.12
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	88.12
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	88.09
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	88.03
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	87.87
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	87.85
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	87.81
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	87.73
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	87.72
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	87.66
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	87.52
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	87.51
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	87.45
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.39
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	87.15
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	87.11
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	87.08
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	87.06
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	87.05
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.04
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	86.99
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	86.86
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	86.8
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	86.76
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	86.73
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	86.73
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	86.68
4ezb_A	317	Uncharacterized conserved protein; structural geno	86.64
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	86.59
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	86.51
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	86.47
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	86.45
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	86.41
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	86.37
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	86.36
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	86.26
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	86.26
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	86.15
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	86.06
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.95
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	85.93
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	85.9
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	85.77
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	85.65
4g65_A	461	TRK system potassium uptake protein TRKA; structur	85.62
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	85.59
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	85.54
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	85.51
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	85.48
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	85.47
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	85.41
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	85.35
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	85.26
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	85.23
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	85.19
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	85.03
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	84.86
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	84.83
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	84.8
3tl2_A	315	Malate dehydrogenase; center for structural genomi	84.64
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	84.64
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	84.39
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	84.38
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	84.35
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	84.34
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	84.33
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	84.24
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	84.21
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	84.13
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	84.11
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	84.07
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	84.06
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	83.93
1lnq_A	336	MTHK channels, potassium channel related protein;	83.9
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.77
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	83.74
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	83.6
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	83.53
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	83.15
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	83.02
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	83.0
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	82.97
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	82.84
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	82.76
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	82.65
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	82.52
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	82.48
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	82.43
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	82.31
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	82.14
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	82.04
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	82.0
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	81.93
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	81.89
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	81.88
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	81.73
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	81.67
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	81.61
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	81.49
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	81.49
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	81.47
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	81.46
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	81.37
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	81.28
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	81.27
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	81.22
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	81.15
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	81.11
4fk1_A	304	Putative thioredoxin reductase; structural genomic	81.02
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	81.0
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	80.79
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	80.74
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	80.68
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	80.65
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	80.63
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	80.57
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	80.55
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	80.48
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	80.36
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	80.36
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	80.34
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	80.27
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	80.17
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	80.12
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	80.06

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=99.92  E-value=1.2e-25  Score=186.34  Aligned_cols=109  Identities=40%  Similarity=0.653  Sum_probs=93.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC-CCccCcchhhhcccCccccccccCCCccccccCCCCeee
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP-EASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNH  105 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~-~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~  105 (146)
                      .++|||||||+|++|+++|.||++.++++|||||+|+... .....|..+..+..++++|.|.++||+    ...++.+.
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~----~~~~~~~~   90 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQA----GTAGRAHH   90 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBG----GGTTBCCE
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccC----CCCCCeEe
Confidence            3489999999999999999999996689999999998653 445677777667778899999999998    67888999


Q ss_pred             eccccEEeccccc-cceecCCChhhhhhhhHHHHhhcc
Q psy3408         106 WPRGKGLGGFPAT-GLIYSNHVKTGRIELNLIIACSLD  142 (146)
Q Consensus       106 ~~rG~~lGGsS~i-~~~~~R~~~~df~~~~~~~~~~~~  142 (146)
                      ++||++|||||+| +|+|+|+.+.||+.|   ++..+|
T Consensus        91 ~~rG~~lGGsS~in~~~~~R~~~~Dfd~w---~~~~~~  125 (526)
T 3t37_A           91 WARGRLIGGSSCLHAMGYMRGHPSDFQAW---VDASGD  125 (526)
T ss_dssp             ECCBCBTTGGGGTSCCBCCCCCHHHHHHH---HHHHSC
T ss_pred             ccCccEECcHHHHhhCEEecCCHHHHHHH---HHhcCC
Confidence            9999999999999 999999999999665   444443

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.90  E-value=2e-24  Score=182.76  Aligned_cols=117  Identities=26%  Similarity=0.321  Sum_probs=94.5

Q ss_pred             hccccccccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC---CCccCcchhhhcccCccccccccCCCcc
Q psy3408          18 VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP---EASELPGYWFNLLKSRQDWAYRTQPDNR   94 (146)
Q Consensus        18 ~~~~~~~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~---~~~~~p~~~~~~~~~~~~w~~~~~p~~~   94 (146)
                      +.........++|||||||+|.+|+++|.||++.++.+|||||+|++..   .....|..+.....+.++|.|.++||. 
T Consensus         8 ~~~~~~~~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-   86 (583)
T 3qvp_A            8 LLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-   86 (583)
T ss_dssp             SBCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-
T ss_pred             hccCHhhcCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-
Confidence            3444455666789999999999999999999987799999999998432   234555555555577899999999986 


Q ss_pred             ccccCCCCeeeeccccEEeccccc-cceecCCChhhhhhhhHHHHhhcc
Q psy3408          95 MFFGLENRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIELNLIIACSLD  142 (146)
Q Consensus        95 ~~~~~~~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~~~~~~~~~~  142 (146)
                          ..++.+.++|||+|||||.+ +|+|.|+++.||+.   |+++.+|
T Consensus        87 ----~~~r~~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~---W~~~g~~  128 (583)
T 3qvp_A           87 ----TNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDS---WETVFGN  128 (583)
T ss_dssp             ----TTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHH---HHHTSCC
T ss_pred             ----CCCCeeeccCceecCCcCcccceEEEeCCHHHHHH---HHHhCCC
Confidence                46778899999999999999 99999999999965   5555443

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=99.90  E-value=3.1e-24  Score=181.11  Aligned_cols=107  Identities=34%  Similarity=0.512  Sum_probs=93.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC--CCCccCcchhhhcc-cCccccccccCCCccccccCCCCeee
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP--PEASELPGYWFNLL-KSRQDWAYRTQPDNRMFFGLENRVNH  105 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~--~~~~~~p~~~~~~~-~~~~~w~~~~~p~~~~~~~~~~~~~~  105 (146)
                      +|||||||+|.+|+++|.+|++.++++|+|||+|+..  .....+|.....+. .++++|.|.++||+    ..+++.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~----~~~~r~~~   77 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQA----GYNGRSIA   77 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCG----GGTTCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCC----CCCCceEe
Confidence            6999999999999999999999669999999999875  34567787665554 37899999999998    78899999


Q ss_pred             eccccEEeccccc-cceecCCChhhhhhhhHHHHhhcc
Q psy3408         106 WPRGKGLGGFPAT-GLIYSNHVKTGRIELNLIIACSLD  142 (146)
Q Consensus       106 ~~rG~~lGGsS~i-~~~~~R~~~~df~~~~~~~~~~~~  142 (146)
                      ++|||+|||||.+ +|+|.|+++.||+.   |++.+|+
T Consensus        78 ~~rGk~lGGsS~iN~m~~~Rg~~~d~d~---W~~~~G~  112 (566)
T 3fim_B           78 YPRGRMLGGSSSVHYMVMMRGSTEDFDR---YAAVTGD  112 (566)
T ss_dssp             CCCBCBTTGGGGTSCCBCCCCCHHHHHH---HHHHHTC
T ss_pred             ccCCcEEcCcccccceEEecCCHHHHHH---HHhcCCC
Confidence            9999999999999 99999999999955   5666554

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.84  E-value=5.8e-22  Score=167.56  Aligned_cols=100  Identities=35%  Similarity=0.509  Sum_probs=83.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC---CCCccCcchhhhcccCccccccccCCCccccccCCCCe
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRV  103 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~---~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~  103 (146)
                      .++|||||||+|.||+++|.+|++.++.+|||||+|+..   .....+|..+..+..++++|.|.++.+        ++.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~~--------~r~   75 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTMV--------RRD   75 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEEE--------EET
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEEC--------Ccc
Confidence            457999999999999999999999755899999999873   234577877766777889999988722        233


Q ss_pred             ee------eccccEEeccccc-cceecCCChhhhhhhh
Q psy3408         104 NH------WPRGKGLGGFPAT-GLIYSNHVKTGRIELN  134 (146)
Q Consensus       104 ~~------~~rG~~lGGsS~i-~~~~~R~~~~df~~~~  134 (146)
                      +.      ++|||+|||||.+ +|+|.|+++.||+.|.
T Consensus        76 ~~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~  113 (577)
T 3q9t_A           76 DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWE  113 (577)
T ss_dssp             TEEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTH
T ss_pred             ccccccccccccccccCccccCceEeccCCHHHHHHHH
Confidence            33      9999999999999 9999999999997764

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=99.83  E-value=7.8e-21  Score=160.73  Aligned_cols=109  Identities=29%  Similarity=0.362  Sum_probs=88.4

Q ss_pred             cccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC--CCcc-CcchhhhcccCccccccccCCCccccccCC
Q psy3408          24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP--EASE-LPGYWFNLLKSRQDWAYRTQPDNRMFFGLE  100 (146)
Q Consensus        24 ~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~--~~~~-~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~  100 (146)
                      ...+.+||+||||+|.+|+++|.+|++.++++|+|||+|....  .... +|..+..+..+..+|.|.++|      ...
T Consensus        19 ~~~~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p------~~~   92 (587)
T 1gpe_A           19 KVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LIN   92 (587)
T ss_dssp             GTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC------CTT
T ss_pred             ccCcccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc------CCC
Confidence            3335689999999999999999999994499999999998653  2234 676655555567899999887      246


Q ss_pred             CCeeeeccccEEeccccc-cceecCCChhhhhhhhHHHHhhc
Q psy3408         101 NRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIELNLIIACSL  141 (146)
Q Consensus       101 ~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~~~~~~~~~  141 (146)
                      ++.+.+++|++|||+|+| +|+|+|+++.||+.   |++.+|
T Consensus        93 ~~~~~~~rGk~lGGsS~in~~~~~R~~~~D~d~---W~~~~G  131 (587)
T 1gpe_A           93 NRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDS---WEKVFG  131 (587)
T ss_dssp             SCCCEECCBCSTTGGGGTSCCEECCCCHHHHHH---HHHTTC
T ss_pred             CceeeeeccccccccccccceEEecCCHHHHHH---HHHhcC
Confidence            678999999999999999 99999999999966   455434

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.79  E-value=9.5e-20  Score=152.83  Aligned_cols=104  Identities=36%  Similarity=0.517  Sum_probs=86.3

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CccCcchhhhcccCccccccccCCCccccccCCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE--ASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENR  102 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~--~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~  102 (146)
                      .....||+||||+|.+|+++|.+|+++++.+|+|||+|.....  ....|..+........+|.|.+.|++    . .++
T Consensus         9 ~~~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~----~-~~~   83 (546)
T 2jbv_A            9 LSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQE----N-GNS   83 (546)
T ss_dssp             CCCCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCS----S-SCT
T ss_pred             cccCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccC----C-CCc
Confidence            3346899999999999999999999966899999999976532  24555544333455789999999988    4 677


Q ss_pred             eeeeccccEEeccccc-cceecCCChhhhhhh
Q psy3408         103 VNHWPRGKGLGGFPAT-GLIYSNHVKTGRIEL  133 (146)
Q Consensus       103 ~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~  133 (146)
                      .+.+++|++|||+|.+ +|+|.|+.+.||+.|
T Consensus        84 ~~~~~rGk~lGGsS~in~~~~~R~~~~d~d~w  115 (546)
T 2jbv_A           84 FMRHARAKVMGGCSSHNSCIAFWAPREDLDEW  115 (546)
T ss_dssp             TCEECCBCSTTGGGGTSCCBCCCCCHHHHHHH
T ss_pred             eEEeecccccccCccccceEEecCCHHHHHHH
Confidence            8999999999999999 999999999999765

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.77  E-value=4.5e-19  Score=147.45  Aligned_cols=106  Identities=18%  Similarity=0.148  Sum_probs=81.1

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcc---hhhhc-ccCccccccccCCCccc------
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPG---YWFNL-LKSRQDWAYRTQPDNRM------   95 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~---~~~~~-~~~~~~w~~~~~p~~~~------   95 (146)
                      ...+||+||||+|++|+++|.+|++. +++|+|||+|.....  ..|.   +.... .....+|.|.++||+..      
T Consensus         8 ~~~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~   84 (507)
T 1coy_A            8 DGDRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG   84 (507)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCC--CCCccccccccccccccccccccccccccccccccc
Confidence            34589999999999999999999995 999999999976431  2332   11111 13357899999887210      


Q ss_pred             -----cccC------CCCeeeeccccEEeccccc-cceecCCChhhhhhhh
Q psy3408          96 -----FFGL------ENRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIELN  134 (146)
Q Consensus        96 -----~~~~------~~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~~  134 (146)
                           ....      .++.+.+++|++|||+|+| +|+|+|+++.||+.|.
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~  135 (507)
T 1coy_A           85 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL  135 (507)
T ss_dssp             CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC
T ss_pred             cccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC
Confidence                 0122      5668899999999999999 9999999999998874

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.74  E-value=2e-18  Score=143.40  Aligned_cols=104  Identities=20%  Similarity=0.217  Sum_probs=79.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC---CccCcchhhhcccCccccccccCCCc-----------
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE---ASELPGYWFNLLKSRQDWAYRTQPDN-----------   93 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~---~~~~p~~~~~~~~~~~~w~~~~~p~~-----------   93 (146)
                      .+||+||||+|++|+++|.+|++. +++|+|||+|.....   ....+... .......+|.|.++|++           
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~~   81 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVVN   81 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGGC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCCcccccccc-cccCcccccccccccccccccccccccc
Confidence            579999999999999999999995 999999999985431   11222211 11233578999888762           


Q ss_pred             ---ccccc----CCCCeeeeccccEEeccccc-cceecCCChhhhhhh
Q psy3408          94 ---RMFFG----LENRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIEL  133 (146)
Q Consensus        94 ---~~~~~----~~~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~  133 (146)
                         ..+.+    ..++.+.+++|++|||+|.+ +|+|.|+++.||+.|
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w  129 (504)
T 1n4w_A           82 RNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEI  129 (504)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHH
T ss_pred             ccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHh
Confidence               01111    15667899999999999999 999999999999887

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.73  E-value=1.1e-18  Score=146.11  Aligned_cols=98  Identities=28%  Similarity=0.405  Sum_probs=74.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC--CCccCcchhhhcccCccccccccCCCccccccCCCCee
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP--EASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVN  104 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~--~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~  104 (146)
                      ..+|||||||+|.+|+++|.+|++  +.+|+|||+|+...  .....|..+..... ..+| |.+.||+    ...++.+
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~-~~~~-~~t~~q~----~~~~~~~   95 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQ-QEDD-GKTPVER----FVSEDGI   95 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHH-SCCC-SSSSEEE----EECTTSC
T ss_pred             cCcccEEEECccHHHHHHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhcc-CCCc-CcCCCcc----ccCCCcc
Confidence            457999999999999999999999  89999999997642  22333332222111 1234 5666765    3455678


Q ss_pred             eeccccEEeccccc-cceecCCChhhhhh
Q psy3408         105 HWPRGKGLGGFPAT-GLIYSNHVKTGRIE  132 (146)
Q Consensus       105 ~~~rG~~lGGsS~i-~~~~~R~~~~df~~  132 (146)
                      .+++|++|||+|.+ +|+|.|+++.||+.
T Consensus        96 ~~~rg~~lGGsS~in~~~~~R~~~~d~~~  124 (536)
T 1ju2_A           96 DNVRGRVLGGTSIINAGVYARANTSIYSA  124 (536)
T ss_dssp             EEEEECBTTGGGGTSCCEECBCCTTSSTT
T ss_pred             eeecceeccccccccCeEEEeCCHHHHhh
Confidence            89999999999999 99999999999975

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.58  E-value=3.3e-15  Score=124.80  Aligned_cols=92  Identities=27%  Similarity=0.398  Sum_probs=64.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC--C---------------ccCcchhhhcccCcccccccc
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE--A---------------SELPGYWFNLLKSRQDWAYRT   89 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~--~---------------~~~p~~~~~~~~~~~~w~~~~   89 (146)
                      +.+||+||||+|++|+++|.+|+++ |++|+|||+|+....  .               ..+|.+...      .|.   
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~---   74 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFES------LFT---   74 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGG------GGT---
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCCCCcccccccccccccccccceeeccchhHHH------hhc---
Confidence            4579999999999999999999996 999999999975421  0               011111000      011   


Q ss_pred             CCCccccccCCCCeeeeccccEEeccccc-cceecCCChhhhhh
Q psy3408          90 QPDNRMFFGLENRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIE  132 (146)
Q Consensus        90 ~p~~~~~~~~~~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~  132 (146)
                      .+..    ........+++|++|||+|.+ +|+|+|+.+.||+.
T Consensus        75 ~~~~----~~~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~  114 (546)
T 1kdg_A           75 DSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSS  114 (546)
T ss_dssp             CSCC----TTBCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCG
T ss_pred             CCCc----cccccccccccceeecccccccceEEecCChHHhcC
Confidence            1110    000113567899999999999 99999999999987

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.01  E-value=3.5e-10  Score=82.05  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +++||+|||+|++|+++|..|+++ |++|+|+|+.+.+
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~-G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSRGS   37 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCC
Confidence            468999999999999999999997 9999999998765

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.90  E-value=9.8e-10  Score=86.17  Aligned_cols=38  Identities=26%  Similarity=0.503  Sum_probs=34.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +++|||+|||+|++|+++|+.|+++ |++|+|||+.+..
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~-G~~V~v~Er~~~~   39 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            4579999999999999999999997 9999999998764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.77  E-value=6e-09  Score=80.30  Aligned_cols=39  Identities=21%  Similarity=0.314  Sum_probs=32.7

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +.+++||++|||+|++|+++|.+|+++ |++|+|+|++..
T Consensus         2 n~M~~yDVvIIGaGpAGlsAA~~lar~-g~~v~lie~~~~   40 (304)
T 4fk1_A            2 NAMKYIDCAVIGAGPAGLNASLVLGRA-RKQIALFDNNTN   40 (304)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSCC
T ss_pred             CCCCCcCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            457789999999999999999999996 999999999743

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.70  E-value=1.4e-08  Score=82.82  Aligned_cols=41  Identities=20%  Similarity=0.351  Sum_probs=36.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE   67 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~   67 (146)
                      ++.+|+||||||++|+++|++|+++.|++|+|||+.+..+.
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            34799999999999999999999855999999999988753

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.63  E-value=4.3e-08  Score=76.40  Aligned_cols=39  Identities=36%  Similarity=0.492  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~~   66 (146)
                      .++|++|||+|++|+++|++|++ +.|++|+|+|+++.++
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            35799999999999999999986 3599999999987654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.61  E-value=3.9e-08  Score=75.66  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=32.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..||++|||+|+||+.+|.+|++. |++|+|+|++..
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~-g~~V~liE~~~~   40 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRA-NLKTVMIERGIP   40 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            479999999999999999999996 999999999743

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.60  E-value=3.1e-08  Score=75.88  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=32.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.||++|||+|+||+.+|.+|++. |++|+|+|++.
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~-g~~v~liE~~~   37 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRS-SLKPVMYEGFM   37 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence            469999999999999999999996 99999999975

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.58  E-value=5.1e-08  Score=75.81  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=33.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|++|||+|++|+++|++|+++ |++|+|||+++.
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~-G~~V~vlE~~~~   38 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAG-GHEVLVAEAAEG   38 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence            468999999999999999999996 999999999864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.55  E-value=6.6e-08  Score=76.08  Aligned_cols=41  Identities=24%  Similarity=0.494  Sum_probs=34.7

Q ss_pred             ccccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          23 EDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        23 ~~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++..+..+|++|||+|++|+.+|++|+++ |++|+|||++..
T Consensus        11 ~~~~~~~~dvvIIGgG~~Gl~~A~~La~~-G~~V~llE~~~~   51 (382)
T 1ryi_A           11 IRAMKRHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTM   51 (382)
T ss_dssp             ---CCSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSST
T ss_pred             hhccCCCCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence            34455689999999999999999999996 999999999754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.54  E-value=7.9e-08  Score=76.72  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=33.9

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+++|++|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~E~~~~~   58 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQS-GIDCDVYEAVKEI   58 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            34579999999999999999999997 9999999998764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.52  E-value=1e-07  Score=77.74  Aligned_cols=41  Identities=27%  Similarity=0.422  Sum_probs=36.8

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE   67 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~   67 (146)
                      .+.++|+||||+|.+|+++|..|+++ |++|+|||+.+..+.
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGG   48 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCc
Confidence            34579999999999999999999996 999999999988753

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.52  E-value=8.4e-08  Score=76.14  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +.+|++|||+|++|+++|++|+++ |++|+|||++...
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~-G~~V~vlE~~~~~   39 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHTFF   39 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            368999999999999999999996 9999999998653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.49  E-value=1.6e-07  Score=75.60  Aligned_cols=37  Identities=24%  Similarity=0.403  Sum_probs=34.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~   65 (146)
                      ..+|+||||+|.+|+++|++|+++ |+ +|+|||++...
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~-G~~~V~vlE~~~~~   42 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARR-GYTNVTVLDPYPVP   42 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSCSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEEeCCCCC
Confidence            468999999999999999999997 99 99999998764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.47  E-value=1.2e-07  Score=76.02  Aligned_cols=35  Identities=40%  Similarity=0.650  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +|+||||+|++|+++|++|+++ |++|+|||+.+..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~-G~~V~vlE~~~~~   36 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence            7999999999999999999997 9999999997654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.45  E-value=1.5e-07  Score=77.75  Aligned_cols=38  Identities=21%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++|+||||+|.+|+++|.+|+++ |.+|+|||+++..
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~-G~~V~vlEk~~~~   76 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARA-GADVLVLERTSGW   76 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            3579999999999999999999996 9999999998765

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.44  E-value=2.2e-07  Score=72.97  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +++|++|||+|.+|+++|++|+++ |++|+|||+..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~-G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARK-GYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCEEEEEeccC
Confidence            478999999999999999999996 99999999975

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.43  E-value=1.9e-07  Score=73.44  Aligned_cols=37  Identities=35%  Similarity=0.619  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +++|++|||+|++|+.+|++|+++ |++|+|||++...
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~-G~~V~vie~~~~~   38 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPP   38 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            368999999999999999999996 9999999998643

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.43  E-value=1.9e-07  Score=74.50  Aligned_cols=37  Identities=30%  Similarity=0.588  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +.+|++|||+|++|+++|..|+++ |.+|+|||+.+.+
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~-G~~V~v~E~~~~~   40 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQKFP   40 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCSS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            368999999999999999999996 9999999998643

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.42  E-value=1.5e-07  Score=73.78  Aligned_cols=36  Identities=36%  Similarity=0.596  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++|++|||+|++|+.+|++|+++ |++|+|||++...
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~-G~~V~vle~~~~~   37 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMPP   37 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHT-TCCEEEECSSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            68999999999999999999997 9999999998653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.42  E-value=2.5e-07  Score=72.81  Aligned_cols=35  Identities=29%  Similarity=0.496  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +++|++|||+|++|+.+|++|+++ |++|+|||++.
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~-G~~V~lle~~~   38 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKRF   38 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            478999999999999999999996 99999999984

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.40  E-value=2.1e-07  Score=74.25  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +|+||||+|.+|+++|++|+++ |++|+|||+.+..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~-G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKA-GHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCceEEEeCCCCC
Confidence            4899999999999999999997 9999999998765

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.40  E-value=3.3e-07  Score=73.67  Aligned_cols=40  Identities=35%  Similarity=0.614  Sum_probs=35.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ..++|++|||+|++|+++|.+|++++|++|+|||+.+..+
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG   44 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            3479999999999999999999995489999999997764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.40  E-value=2.3e-07  Score=74.84  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+.+|..|+++ |.+|+|||+++..
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~-G~~V~vlEk~~~~   39 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKI   39 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            468999999999999999999996 9999999998754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.40  E-value=2.7e-07  Score=74.92  Aligned_cols=37  Identities=35%  Similarity=0.576  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|+||||+|++|+.+|..|+++ |.+|+|||+.+..
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~-G~~V~llEk~~~~   62 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHARAP   62 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            468999999999999999999997 9999999998764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.39  E-value=3.4e-07  Score=68.22  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=32.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ++||++|||+|++|+.+|..|++. |.+|+|||+.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~-g~~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecC
Confidence            468999999999999999999996 9999999997

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.39  E-value=2.8e-07  Score=72.88  Aligned_cols=37  Identities=35%  Similarity=0.466  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHH-hCC-CcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSE-ELD-WRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~-~~g-~~VlvLE~G~~   64 (146)
                      ..++|++|||+|++|+++|++|++ + | ++|+|||++..
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~-G~~~V~vlE~~~~   57 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNH-GITNVAVLEKGWL   57 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHH-CCCCEEEECSSST
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhc-CCCcEEEEeCCCC
Confidence            457999999999999999999999 8 8 99999999863

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.38  E-value=2e-07  Score=76.13  Aligned_cols=36  Identities=33%  Similarity=0.458  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .+|||||+|.+|+++|.+|+++ |++|+|||+.+..+
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~-G~~V~VlEa~~~~G   37 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAA-GIPVLLLEQRDKPG   37 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT-TCCEEEECCC----
T ss_pred             CCEEEECCcHHHHHHHHHHHHC-CCcEEEEccCCCCC
Confidence            3799999999999999999997 99999999987764

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.37  E-value=3.6e-07  Score=72.39  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++|++|||+|++|+.+|..|+++ |.+|+|||+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            58999999999999999999997 999999999764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.37  E-value=3.7e-07  Score=70.07  Aligned_cols=38  Identities=34%  Similarity=0.530  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+.+|..|++.+|.+|+|||+.+..
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~   75 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   75 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence            46899999999999999999999438999999998765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.36  E-value=3.8e-07  Score=74.47  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=33.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ++||++|||+|++|+.+|.+|++. |++|+|+|+++
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence            579999999999999999999997 99999999986

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.34  E-value=4.6e-07  Score=74.97  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=36.5

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ..+++||+||||+|.+|+++|.+|+++ |++|+|||+++..+
T Consensus        16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~-g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           16 FQGEHYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYG   56 (475)
T ss_dssp             -CCCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeccCCCC
Confidence            345689999999999999999999996 99999999998764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.34  E-value=4.7e-07  Score=72.43  Aligned_cols=37  Identities=27%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+++|..|+++ |.+ |+|||+.+..
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~   40 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSEI   40 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCCc
Confidence            468999999999999999999996 999 9999998654

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.34  E-value=4e-07  Score=76.40  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +..||+||||+|++|+.+|..|+++ |.+|+|||+++.
T Consensus        16 ~~~~DVvVIGgGi~Gl~~A~~La~~-G~~V~LlEk~d~   52 (561)
T 3da1_A           16 EKQLDLLVIGGGITGAGIALDAQVR-GIQTGLVEMNDF   52 (561)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSST
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence            3579999999999999999999996 999999999854

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.34  E-value=4.5e-07  Score=76.33  Aligned_cols=38  Identities=32%  Similarity=0.505  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+.+||+|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~-G~~V~VlEr~~~~   84 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAG-GVGALVLEKLVEP   84 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHT-TCCEEEEBSCSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCCC
Confidence            3578999999999999999999997 9999999998664

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.34  E-value=3.6e-07  Score=71.46  Aligned_cols=37  Identities=32%  Similarity=0.545  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +..+|++|||+|.+|+++|++|+ + |++|+|||+++..
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~-G~~V~vlE~~~~~   43 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-A-HGRVVVLEREAQP   43 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-T-TSCEEEECSSSST
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-C-CCCEEEEECCCCc
Confidence            34789999999999999999999 5 9999999998654

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.33  E-value=4.5e-07  Score=72.62  Aligned_cols=36  Identities=17%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .|+||||+|++|+++|++|+++ |++|+|||+.+..+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~-G~~V~vlE~~~~~G   36 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARN-GHEIIVLEKSAMIG   36 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCC
Confidence            3899999999999999999996 99999999987653

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.33  E-value=4.8e-07  Score=71.59  Aligned_cols=38  Identities=29%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +..+|++|||+|++|+.+|..|+++ |.+|+|+|+.+..
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~   46 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQN-GWDVRLHEKSSEL   46 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCC
Confidence            3468999999999999999999996 9999999998665

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.33  E-value=5.4e-07  Score=73.27  Aligned_cols=37  Identities=35%  Similarity=0.618  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +++|+||||+|++|+.+|..|+++ |.+|+|||+.+..
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~-G~~V~llEk~~~~   61 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKL   61 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCCEEEEECCCCC
Confidence            468999999999999999999996 9999999998754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.33  E-value=3.1e-07  Score=73.93  Aligned_cols=37  Identities=30%  Similarity=0.392  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCC------CcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELD------WRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g------~~VlvLE~G~~~~   66 (146)
                      .+|++|||+|++|+++|++|+++ |      ++|+|||+.+..+
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~-G~~~~~~~~V~vlEa~~~~G   47 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKE-IKEKNLPLELTLVEASPRVG   47 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HTTTTCSEEEEEECSSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHh-ccccCCCCCEEEEECCCCCC
Confidence            58999999999999999999997 7      9999999986653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.32  E-value=5.4e-07  Score=73.98  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +++||++|||+|++|+.+|.+|++. |++|+|+|+.+..
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~~   60 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQL-GMKVAVVEKRSTY   60 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            4579999999999999999999996 9999999987654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.32  E-value=5.3e-07  Score=71.61  Aligned_cols=37  Identities=32%  Similarity=0.518  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|..|+++ |.+|+|+|+.+..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCCC
Confidence            368999999999999999999996 9999999998654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.32  E-value=2.8e-07  Score=74.91  Aligned_cols=36  Identities=36%  Similarity=0.604  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +++|++|||+|++|+.+|..|+++ |.+|+|||+.+.
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~-G~~V~vlE~~~~   40 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPW   40 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSS-SCCEEEECSSCG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            368999999999999999999996 999999999865

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.32  E-value=6.4e-07  Score=74.08  Aligned_cols=40  Identities=28%  Similarity=0.374  Sum_probs=35.1

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+.+||+|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~~   46 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLA-GVEVVVLERLVER   46 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCCC-
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCC
Confidence            445689999999999999999999996 9999999998664

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.31  E-value=6.2e-07  Score=71.44  Aligned_cols=37  Identities=27%  Similarity=0.453  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|..|+++ |.+|+|+|+.+..
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~   61 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQN-GIDVSVYERDNDR   61 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSSST
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCc
Confidence            468999999999999999999996 9999999998643

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.31  E-value=6.9e-07  Score=71.41  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=34.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~~   66 (146)
                      +.+|++|||+|++|+++|.+|+++ | ++|+|+|+.+..+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~-g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQA-GFHDYTILERTDHVG   43 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEECCCCCC
Confidence            468999999999999999999996 8 9999999987653

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.31  E-value=5.4e-07  Score=74.32  Aligned_cols=36  Identities=33%  Similarity=0.498  Sum_probs=32.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +.+|++|||+|++|+.+|+.|+++ |++|+|||+++.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~-G~~V~llE~~~~   37 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGR-GLSVLMLEAQDL   37 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSST
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCEEEEECCCC
Confidence            468999999999999999999996 999999999753

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.30  E-value=7.2e-07  Score=71.01  Aligned_cols=38  Identities=42%  Similarity=0.600  Sum_probs=34.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .+||++|||+|++|+.+|.+|+++ +|++|+|||++...
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~  116 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence            368999999999999999999995 59999999998765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.30  E-value=7.5e-07  Score=76.25  Aligned_cols=37  Identities=32%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|+||||+|.+|+++|++|+++ |++|+|||++...
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~~  299 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRR-GAVVTLYCADAQP  299 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTT-TCCEEEEESSSST
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCcEEEEeCCCcc
Confidence            358999999999999999999996 9999999997543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.30  E-value=7.1e-07  Score=67.38  Aligned_cols=35  Identities=43%  Similarity=0.671  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+|++|||+|++|+.+|..|++. |++|+|+|+++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~   36 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA-RKNILLVDAGER   36 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCc
Confidence            58999999999999999999996 999999998653

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.30  E-value=4.7e-07  Score=74.70  Aligned_cols=38  Identities=32%  Similarity=0.400  Sum_probs=34.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~~   66 (146)
                      ..+|++|||+|++|+++|.+|+++ | ++|+|||+.+..+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~-G~~~V~VlEa~~riG   45 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQN-GIQDCLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHT-TCCSEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCCCC
Confidence            468999999999999999999996 8 9999999988764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.30  E-value=6.3e-07  Score=71.29  Aligned_cols=37  Identities=43%  Similarity=0.609  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .+|++|||+|++|+++|.+|+++ |++|+|+|+++..+
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIG   37 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCC
Confidence            37999999999999999999997 99999999987654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.30  E-value=5.8e-07  Score=74.08  Aligned_cols=38  Identities=32%  Similarity=0.525  Sum_probs=34.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +.+|+||||+|.+|+++|.+|+++ |++|+|||+.+..+
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~G   40 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVG   40 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSB
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Confidence            468999999999999999999996 99999999987763

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.30  E-value=7.5e-07  Score=72.10  Aligned_cols=40  Identities=43%  Similarity=0.645  Sum_probs=35.8

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ....+|++|||+|++|+++|.+|+++ |++|+|||+.+..+
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPHIG   65 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHC-CCceEEEeccCCCC
Confidence            34579999999999999999999996 99999999987654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.29  E-value=4.9e-07  Score=69.50  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=32.8

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.+|++|||+|++|+.+|.+|+++ |++|+|+|+.+
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~-g~~v~vie~~~   55 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARA-EIKPILYEGMM   55 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence            34579999999999999999999997 99999999954

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.28  E-value=5.6e-07  Score=73.01  Aligned_cols=39  Identities=23%  Similarity=0.431  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+|++|||+|++|+++|..|+++ |++|+|||+.+..+
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~-g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLG   52 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCCC
Confidence            3468999999999999999999996 99999999987653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.28  E-value=6.8e-07  Score=69.00  Aligned_cols=37  Identities=22%  Similarity=0.518  Sum_probs=33.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~~   38 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEASP   38 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHS-SCCEEEECCSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCC
Confidence            468999999999999999999996 9999999998653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.28  E-value=7.3e-07  Score=75.43  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++.+|++|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~-G~~V~LiEr~~~~   58 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKL-GHDVTIYERSAFP   58 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcC-CCCEEEEcCCCCC
Confidence            4479999999999999999999996 9999999998654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.28  E-value=7.7e-07  Score=72.99  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +||++|||+|++|+.+|.+|++. |++|+|||++
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~   58 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGAL-GKRVAIAEEY   58 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-cCEEEEEeCC
Confidence            69999999999999999999996 9999999994

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.28  E-value=7.2e-07  Score=74.71  Aligned_cols=38  Identities=29%  Similarity=0.390  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++||||||+|++|+.+|..|+++ |.+|+|||+.+..
T Consensus       124 ~~~~DVvVVGaG~aGl~aA~~la~~-G~~V~vlEk~~~~  161 (571)
T 1y0p_A          124 HDTVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVI  161 (571)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            3478999999999999999999996 9999999998765

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.27  E-value=5.7e-07  Score=72.56  Aligned_cols=34  Identities=35%  Similarity=0.608  Sum_probs=31.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G   62 (146)
                      .++|+||||+|.+|+.+|++|+++ | ++|+|||+.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~-G~~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVW-SGGSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHH-HCSCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEccC
Confidence            579999999999999999999997 8 999999993

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.27  E-value=6.8e-07  Score=72.02  Aligned_cols=38  Identities=32%  Similarity=0.358  Sum_probs=34.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .++|++|||+|++|+++|.+|+++ |++|+|||+.+..+
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCC
Confidence            468999999999999999999996 99999999987654

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.27  E-value=8.4e-07  Score=73.35  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=34.4

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .....+||+|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus         8 ~~~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~~   47 (499)
T 2qa2_A            8 HHRSDASVIVVGAGPAGLMLAGELRLG-GVDVMVLEQLPQR   47 (499)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCSSC
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCC
Confidence            345689999999999999999999996 9999999998654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.27  E-value=7.1e-07  Score=74.72  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++|+||||+|++|+.+|..|+++ |.+|+|||+.+..
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~-G~~V~vlEk~~~~  156 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFS  156 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            3578999999999999999999997 9999999998765

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.27  E-value=9.8e-07  Score=75.27  Aligned_cols=36  Identities=39%  Similarity=0.585  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+|+||||+|.+|+++|++|+++ |++|+|||+....
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~~  307 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRR-GWQVTLYCADEAP  307 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence            48999999999999999999996 9999999996543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.27  E-value=8.2e-07  Score=70.71  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+|++|||+|++|+.+|..|+++ |.+|+|+|+.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            468999999999999999999996 999999999865

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.26  E-value=7.6e-07  Score=72.70  Aligned_cols=37  Identities=32%  Similarity=0.595  Sum_probs=33.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+||++|||+|++|+.+|.+|++. |++|+|+|+.+..
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~-G~~V~liEk~~~~   39 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKA-KYNVLMADPKGEL   39 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECTTSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCC
Confidence            469999999999999999999996 9999999976654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.26  E-value=6.3e-07  Score=74.07  Aligned_cols=37  Identities=41%  Similarity=0.714  Sum_probs=33.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+.+|..|+++ |++|+|||+.+..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~-G~~V~liE~~~~~   42 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMR-GHRVLLLEREAFP   42 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCCEEEEccCCCC
Confidence            468999999999999999999996 9999999998743

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.26  E-value=9.7e-07  Score=67.29  Aligned_cols=34  Identities=35%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +.+|++|||+|++|+.+|.+|++. |++|+|+|+.
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   47 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARY-MLKTLVIGET   47 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             CccCEEEECccHHHHHHHHHHHHC-CCcEEEEecc
Confidence            478999999999999999999996 9999999996

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.25  E-value=6.5e-07  Score=72.52  Aligned_cols=37  Identities=24%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~~~~   66 (146)
                      .+|++|||+|.+|+++|++|+++ |+  +|+|||+.+..+
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~-G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRA-PCPPKVVLVESSERLG   40 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTS-SSCCEEEEECSSSSSB
T ss_pred             CceEEEECCcHHHHHHHHHHHhC-CCCCcEEEEeCCCCCC
Confidence            36999999999999999999996 88  999999987653

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.25  E-value=1e-06  Score=71.83  Aligned_cols=39  Identities=31%  Similarity=0.595  Sum_probs=35.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+|++|||+|++|+++|++|+++ |++|+|+|+.+..+
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~G   47 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPG   47 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeccCCCC
Confidence            3478999999999999999999996 99999999987764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.25  E-value=1.1e-06  Score=67.73  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~   40 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMR-GLSFRFVDPLPEP   40 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            468999999999999999999996 9999999998654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.25  E-value=9.2e-07  Score=73.25  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=34.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~-G~~v~viEr~~~~   40 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQ-GVRVLVVERRPGL   40 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSSSC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCC
Confidence            468999999999999999999997 9999999998754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.25  E-value=1.1e-06  Score=68.85  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+..+|++|||+|++|+.+|..|++. |++|+|||+.+..
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~   49 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMN-NISCRIIESMPQL   49 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCC
Confidence            34579999999999999999999996 9999999998654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.24  E-value=8.4e-07  Score=74.89  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+||||+|.+|+.+|.+|+++ |.+|+|||+...
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~-G~~V~vlEK~~~   41 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQS-GQTCALLSKVFP   41 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            478999999999999999999996 999999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.24  E-value=8e-07  Score=74.89  Aligned_cols=38  Identities=39%  Similarity=0.540  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh---C--CCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE---L--DWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~---~--g~~VlvLE~G~~~   65 (146)
                      +++|+||||+|++|+++|.+|++.   +  |.+|+|||+++..
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~   76 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   76 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence            368999999999999999999984   1  8999999998764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.23  E-value=9.3e-07  Score=72.26  Aligned_cols=36  Identities=31%  Similarity=0.600  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.+||++|||+|++|+.+|.+|++. |++|+|+|+..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~-G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence            4579999999999999999999996 99999999874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.23  E-value=1.1e-06  Score=67.66  Aligned_cols=36  Identities=28%  Similarity=0.484  Sum_probs=32.5

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +...+|++|||+|++|+.+|..|++. |++|+|+|+.
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   48 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARS-GFSVAILDKA   48 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhC-CCcEEEEeCC
Confidence            34579999999999999999999996 9999999995

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.23  E-value=9.2e-07  Score=74.33  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=33.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+|++|||+|++|+.+|..|++. |.+|+|||+++.
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~-G~kV~VlEr~~~  141 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQM-GFNPIIVERGKE  141 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHT-TCCCEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEEccCc
Confidence            358999999999999999999996 999999999964

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.23  E-value=9.7e-07  Score=72.15  Aligned_cols=40  Identities=25%  Similarity=0.344  Sum_probs=34.5

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +.+.+|++|||+|++|+++|..|+++ |++|+|+|+.+..+
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~G   49 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAG   49 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCC
Confidence            34578999999999999999999996 99999999987764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.22  E-value=1.1e-06  Score=71.67  Aligned_cols=34  Identities=24%  Similarity=0.364  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+||++|||+|++|+.+|.+|++. |++|+|||++
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~-G~~V~liEk~   37 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEEF   37 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            369999999999999999999996 9999999994

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.22  E-value=1.2e-06  Score=67.23  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~   42 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMR-QASVKIIESLPQL   42 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCC
Confidence            358999999999999999999996 9999999998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.22  E-value=1.2e-06  Score=67.47  Aligned_cols=35  Identities=31%  Similarity=0.608  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ...+|++|||+|++|+.+|.+|++. |++|+|+|+.
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   40 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRA-QLSTLILEKG   40 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHc-CCcEEEEeCC
Confidence            3478999999999999999999996 9999999998

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.22  E-value=1.6e-06  Score=70.36  Aligned_cols=39  Identities=21%  Similarity=0.351  Sum_probs=35.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+|++|||+|.+|+++|..|+++ |++|+|+|+.+..+
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYG   42 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCcc
Confidence            4578999999999999999999996 99999999987764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.22  E-value=1.1e-06  Score=73.79  Aligned_cols=36  Identities=31%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+|++|||+|.+|+.+|+.|+++ |.+|+|||+++.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~r-G~~V~LlE~~~~   66 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAAS-GIKTGLIEMQDF   66 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence            469999999999999999999997 999999999854

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.22  E-value=1.2e-06  Score=71.58  Aligned_cols=37  Identities=30%  Similarity=0.565  Sum_probs=33.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ++|++|||+|++|+++|.+|+++ |++|+|||+.+..+
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G   75 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVA-GFKTLLLEARDRIG   75 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSBSB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Confidence            38999999999999999999996 99999999987653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.21  E-value=9.2e-07  Score=71.56  Aligned_cols=35  Identities=31%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.+|++|||+|++|+++|..|+++ |++|+|||+.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~-G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQH-DVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHT-TCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence            458999999999999999999997 99999999976

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.21  E-value=1.1e-06  Score=71.19  Aligned_cols=37  Identities=30%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+++|++|+++ |  ++|+|||+.+..
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~-g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERA-FPDLNITLLEAGERL   41 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHH-CTTSEEEEECSSSSS
T ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCCCEEEEECCCCC
Confidence            468999999999999999999997 8  999999997664

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.21  E-value=9.3e-07  Score=68.91  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~   65 (146)
                      +|++|||+|++|+++|+.|++   . |++|+|+|+++..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~-G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG-PLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C-CEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC-CceEEEEECCCCC
Confidence            599999999999999999999   6 9999999998654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.21  E-value=1.4e-06  Score=71.44  Aligned_cols=35  Identities=34%  Similarity=0.481  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ..+||++|||+|++|+.+|.+|++. |++|+|+|++
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~-G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLN-GARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            4579999999999999999999996 9999999953

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.20  E-value=1e-06  Score=68.81  Aligned_cols=34  Identities=15%  Similarity=0.211  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCC------CcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELD------WRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g------~~VlvLE~G~~   64 (146)
                      .|++|||+|.+|+++|++|+++ |      ++|+|||++..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCCC
Confidence            3899999999999999999997 5      99999999853

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.19  E-value=1.2e-06  Score=70.21  Aligned_cols=37  Identities=35%  Similarity=0.569  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      ..+|++|||+|++|+.+|+.|+++ +|++|+|||++..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            359999999999999999999993 3899999999754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.19  E-value=1.4e-06  Score=68.53  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+|+|||+|++|+++|..|+++ |++|+|+||.+.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~-G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKH-GIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCEEEEecCCCC
Confidence            3699999999999999999997 9999999997654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.19  E-value=1.5e-06  Score=67.85  Aligned_cols=35  Identities=29%  Similarity=0.474  Sum_probs=32.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      .++|++|||+|++|+.+|.+|++. |+ +|+|||+.+
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~-g~~~v~lie~~~   38 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDF-GITDVIILEKGT   38 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence            468999999999999999999996 88 999999986

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.19  E-value=1.2e-06  Score=74.55  Aligned_cols=37  Identities=30%  Similarity=0.359  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...+|+||||+|.+|+.+|.+|+++ |.+|+|||+...
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~~-G~~V~vlEK~~~   52 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSEA-GFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCG
T ss_pred             cccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCC
Confidence            4578999999999999999999996 999999999754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.18  E-value=1.8e-06  Score=71.58  Aligned_cols=36  Identities=31%  Similarity=0.529  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+||++|||+|++|+.+|.+|++. |++|+|+|+.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~-G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQY-GKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccC
Confidence            4579999999999999999999996 99999999954

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.18  E-value=1.5e-06  Score=72.58  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+||+|||+|++|+++|..|++. |.+|+|||+.+..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~-G~~V~vlEr~~~~   61 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHR-QVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCC
Confidence            368999999999999999999996 9999999998654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.17  E-value=1.4e-06  Score=71.66  Aligned_cols=34  Identities=32%  Similarity=0.484  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +||++|||+|++|+.+|.+|++. |++|+|+|++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~-G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKH-TDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-CSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            59999999999999999999996 99999999975

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.17  E-value=2.1e-06  Score=60.91  Aligned_cols=34  Identities=35%  Similarity=0.672  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ||++|||+|++|+.+|..|++. |.+|+|+|+++.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~-g~~v~lie~~~~   35 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARA-GLKVLVLDGGRS   35 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence            7999999999999999999996 999999999864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.17  E-value=1.7e-06  Score=73.56  Aligned_cols=38  Identities=29%  Similarity=0.538  Sum_probs=34.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ..||+||||+|++|+.+|..|++. |++|+|||+++..+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~-G~~V~liE~~~~~g   82 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDS   82 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCCS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhC-CCcEEEEeccCCCC
Confidence            469999999999999999999996 99999999987654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.16  E-value=1.8e-06  Score=73.94  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=32.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+||+||||+|++|+.+|..|++. |.+|+|||++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM-GQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC-CCCEEEEeecc
Confidence            479999999999999999999996 99999999974

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.16  E-value=2e-06  Score=70.03  Aligned_cols=36  Identities=22%  Similarity=0.502  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +||++|||+|++|+.+|.+|++. |++|+|+|+.+..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL-GMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCc
Confidence            68999999999999999999996 9999999998654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.16  E-value=1.9e-06  Score=71.49  Aligned_cols=37  Identities=35%  Similarity=0.517  Sum_probs=33.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+++|..|++   . |.+|+|||+....
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G~~V~liE~~~~~   43 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQ-QANITLIESAAIP   43 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCS-SCEEEEEECSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCC-CCEEEEECCCCCC
Confidence            46899999999999999999999   6 9999999996543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.16  E-value=2.1e-06  Score=69.00  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC-CCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG-GDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G-~~~   65 (146)
                      ...+|++|||+|++|+++|++|+++ |++|+|+|+. +..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~-G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRA-GHDVTILEANANRV   80 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHT-SCEEEEECSCSSCC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHC-CCcEEEEecccccc
Confidence            3468999999999999999999997 9999999998 654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.15  E-value=1.7e-06  Score=70.99  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ..+||++|||+|++|+.+|.+|++. |++|+|+|+.
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~-G~~V~liEk~   38 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQL-GKKVAVADYV   38 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEEec
Confidence            3579999999999999999999996 9999999973

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.15  E-value=2.1e-06  Score=70.35  Aligned_cols=38  Identities=24%  Similarity=0.472  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++|++|||+|++|..+|.+|++. |++|+|+|+.+..
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~-G~~V~liE~~~~~   41 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            3479999999999999999999996 9999999996543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.14  E-value=2.8e-06  Score=69.13  Aligned_cols=37  Identities=30%  Similarity=0.500  Sum_probs=34.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+.+|.+|++. |++|+|+|+.+..
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~-g~~V~liE~~~~~   41 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCc
Confidence            479999999999999999999997 9999999998654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.14  E-value=2.6e-06  Score=70.91  Aligned_cols=38  Identities=34%  Similarity=0.497  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++|++|||+|++|+.+|.+|++. |.+|+|+|+++..
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~~   51 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDV   51 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            4479999999999999999999996 9999999998653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.13  E-value=1.8e-06  Score=65.62  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEE-EecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLL-IEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~Vlv-LE~G   62 (146)
                      +..+|++|||+|++|+.+|..|+++ |++|+| +|+.
T Consensus         2 ~~~~~vvIIG~G~aGl~aA~~l~~~-g~~v~li~e~~   37 (315)
T 3r9u_A            2 NAMLDVAIIGGGPAGLSAGLYATRG-GLKNVVMFEKG   37 (315)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHH-TCSCEEEECSS
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHC-CCCeEEEEeCC
Confidence            3578999999999999999999997 999999 9994

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.13  E-value=1.4e-06  Score=71.57  Aligned_cols=35  Identities=37%  Similarity=0.541  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~   64 (146)
                      .+|+||||+|++|+++|..|++   . |.+|+|||+...
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~-G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDD-RIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGG-GSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCC-CCEEEEEecCCC
Confidence            4799999999999999999999   7 999999999754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.13  E-value=1.8e-06  Score=73.95  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=33.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+||||+|.+|+.+|.+|+++ |.+|+|||+...
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~-G~~V~vlEK~~~   39 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQK-GLSTIVLSLIPV   39 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCG
T ss_pred             ccccEEEECchHHHHHHHHHHHHC-CCcEEEEeccCC
Confidence            368999999999999999999996 999999999764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.13  E-value=2.8e-06  Score=70.22  Aligned_cols=38  Identities=26%  Similarity=0.277  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+|++|||+|++|+.+|..|++. |.+|+|||+.+..
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~-G~~V~liEk~~~~  127 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALL-GARVVLVEKRIKF  127 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCSSC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHC-CCeEEEEEecccc
Confidence            4578999999999999999999996 9999999998654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.13  E-value=2e-06  Score=70.21  Aligned_cols=37  Identities=30%  Similarity=0.502  Sum_probs=33.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+.+|.+|++. |++|+|+|+.+..
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~   40 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCc
Confidence            468999999999999999999996 9999999996543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.13  E-value=2.4e-06  Score=70.43  Aligned_cols=34  Identities=35%  Similarity=0.676  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +||++|||+|++|+.+|.+|++. |++|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            58999999999999999999996 99999999985

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.12  E-value=2.5e-06  Score=69.60  Aligned_cols=37  Identities=22%  Similarity=0.339  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+.+|.+|++. |++|+|+|+.+..
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~~~   41 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQL-GFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCc
Confidence            479999999999999999999996 9999999998654

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.12  E-value=2.3e-06  Score=73.04  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=32.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+||+||||+|++|+.+|..|++. |.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~-G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARM-GAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCCEEEEEecc
Confidence            469999999999999999999996 99999999974

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.12  E-value=2.7e-06  Score=69.12  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +||++|||+|++|+.+|.+|++. |++|+|+|+.+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQL-GMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            48999999999999999999996 9999999998643

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.12  E-value=2.2e-06  Score=72.85  Aligned_cols=37  Identities=38%  Similarity=0.629  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~   65 (146)
                      ..+||+|||+|++|+++|..|++ . |.+|+|||+.+..
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~-G~~V~viEr~~~~   68 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFP-DIRTCIVEQKEGP   68 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCT-TSCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            47899999999999999999999 8 9999999998654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.12  E-value=2.3e-06  Score=73.39  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-----CCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-----LDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-----~g~~VlvLE~G~~~   65 (146)
                      .++||||||+|.+|+.+|.+|+++     ||.+|+|||++...
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            368999999999999999999985     38999999997643

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.12  E-value=2.8e-06  Score=68.01  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ++|++|||+|++|+.+|.+|+++ |++|+|+|+.+..+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEEecCCcC
Confidence            57999999999999999999996 99999999987654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.12  E-value=2.5e-06  Score=69.92  Aligned_cols=35  Identities=34%  Similarity=0.677  Sum_probs=32.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|++|||+|++|+.+|.+|++. |++|+|+|++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~-g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY-GAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-SCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            479999999999999999999996 99999999974

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.11  E-value=2.4e-06  Score=69.14  Aligned_cols=38  Identities=34%  Similarity=0.397  Sum_probs=34.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC-----CcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD-----WRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g-----~~VlvLE~G~~~~   66 (146)
                      ..+|++|||+|++|+.+|..|++. |     .+|+|||+.+..+
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~~~~~~v~liE~~~~~g   71 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER-AQAQGALEVLFLDKQGDYR   71 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH-HHHHCCCCEEEEESCSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc-ccccCcccEEEEecCCCCC
Confidence            468999999999999999999997 7     8999999987543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.11  E-value=1.6e-06  Score=66.35  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +.+|++|||+|++|+.+|..|++. |++|+|+|+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   37 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM   37 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEccC
Confidence            468999999999999999999996 9999999975

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.10  E-value=2.8e-06  Score=69.39  Aligned_cols=35  Identities=40%  Similarity=0.639  Sum_probs=32.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|++|||+|++|+.+|.+|++. |++|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence            469999999999999999999995 99999999973

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.10  E-value=2.2e-06  Score=72.96  Aligned_cols=37  Identities=27%  Similarity=0.409  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHH---H-hCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLS---E-ELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~---~-~~g~~VlvLE~G~~   64 (146)
                      ..++|+||||+|.+|+.+|.+|+   + + |.+|+|||+...
T Consensus        20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~~-G~~V~vlEK~~~   60 (643)
T 1jnr_A           20 VVETDILIIGGGFSGCGAAYEAAYWAKLG-GLKVTLVEKAAV   60 (643)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTT-TCCEEEECSSCT
T ss_pred             eccCCEEEECcCHHHHHHHHHHhhhhhhC-CCeEEEEeCcCC
Confidence            35789999999999999999999   5 5 999999999864

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.10  E-value=2.7e-06  Score=72.04  Aligned_cols=36  Identities=28%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~   64 (146)
                      .++|+||||+|++|+.+|..|+++ |  .+|+|||+...
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~-G~~~~V~vlEk~~~   41 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQA-NPNAKIALISKVYP   41 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-CTTCCEEEEESSCG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhc-CCCCcEEEEeCCCC
Confidence            368999999999999999999997 8  99999999754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.10  E-value=1.9e-06  Score=66.89  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ....+|++|||+|++|+.+|..|++. |++|+|+|+.
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   46 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARA-QLAPLVFEGT   46 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHT-TCCCEEECCS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            34579999999999999999999996 9999999975

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.10  E-value=3e-06  Score=69.02  Aligned_cols=35  Identities=29%  Similarity=0.394  Sum_probs=32.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+|++|||+|++|+.+|.+|++. |++|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            478999999999999999999996 99999999983

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.10  E-value=2.1e-06  Score=71.80  Aligned_cols=36  Identities=33%  Similarity=0.597  Sum_probs=33.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|+||||+|.+|+.+|.+|++  |.+|+|||+++..
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~--G~~V~vlEk~~~~   42 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGPVT   42 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT--TSCEEEECSSCTT
T ss_pred             CCCCEEEECccHHHHHHHHHHhc--CCcEEEEECCCCC
Confidence            46899999999999999999998  8999999998754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.10  E-value=3.7e-06  Score=69.75  Aligned_cols=38  Identities=26%  Similarity=0.347  Sum_probs=34.5

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ....+|++|||+|++|+.+|.+|++. |++|+|||+++.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~   77 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPF   77 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            34579999999999999999999996 999999999874

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.10  E-value=2.3e-06  Score=69.62  Aligned_cols=33  Identities=24%  Similarity=0.501  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ++|++|||+|++|+.+|.+|++. |++|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~-G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQL-GLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            58999999999999999999996 9999999997

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.10  E-value=3.4e-06  Score=70.37  Aligned_cols=37  Identities=32%  Similarity=0.438  Sum_probs=33.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+++|..|++   . |.+|+|||+...+
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G~~V~liE~~~~~   63 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQG-TADITLLQAPDIP   63 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTT-SSEEEEEECCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCC-CCcEEEEeCCCCC
Confidence            46899999999999999999999   6 8999999997543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.10  E-value=2.7e-06  Score=64.95  Aligned_cols=32  Identities=31%  Similarity=0.492  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G   62 (146)
                      ||++|||+|++|+.+|..|++. |+ +|+|+|+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~-g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRG-GVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHHC-CCCcEEEEcCC
Confidence            7999999999999999999996 99 99999996

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.09  E-value=2.8e-06  Score=72.60  Aligned_cols=37  Identities=32%  Similarity=0.408  Sum_probs=32.9

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ...+||+||||+|.+|+.+|..|++. |.+|+|||+..
T Consensus        18 ~~~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~   54 (641)
T 3cp8_A           18 GSHMYDVIVVGAGHAGCEAALAVARG-GLHCLLITSDL   54 (641)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEecc
Confidence            34579999999999999999999997 99999999974

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.09  E-value=2.7e-06  Score=69.22  Aligned_cols=35  Identities=37%  Similarity=0.581  Sum_probs=32.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|++|||+|++|..+|.+|++. |++|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC-CCeEEEEcCCC
Confidence            469999999999999999999995 99999999974

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.09  E-value=2.6e-06  Score=71.42  Aligned_cols=34  Identities=29%  Similarity=0.617  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .||+||||+|++|..+|.++++. |++|+|||+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~-G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAH-GARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence            48999999999999999999996 99999999754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.08  E-value=4.5e-06  Score=67.64  Aligned_cols=37  Identities=35%  Similarity=0.491  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~~~   65 (146)
                      +.+|++|||+|++|+.+|..|++. |.  +|+|+|+.+..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~-G~~~~V~v~E~~~~~   43 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAE-KAFDQVTLFERRGSP   43 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCCSEEEEECSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc-CCCCCeEEEecCCCC
Confidence            468999999999999999999996 88  99999998654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.08  E-value=2.9e-06  Score=73.99  Aligned_cols=36  Identities=25%  Similarity=0.569  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      .++|++|||+|.+|+++|++|+++ |+ +|+|||++..
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~-G~~~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTR-GWNNITVLDQGPL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCC
Confidence            468999999999999999999996 88 9999999875

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.07  E-value=3.2e-06  Score=68.62  Aligned_cols=34  Identities=29%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+||++|||+|++|+.+|.+|++. |++|+|+|+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~   35 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG   35 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            368999999999999999999996 9999999997

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.07  E-value=3.5e-06  Score=70.56  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+|++|||+|++|+.+|.+|++. |.+|+|||+++..
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~~   56 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASGV   56 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            4578999999999999999999995 9999999997653

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.07  E-value=4.5e-06  Score=68.67  Aligned_cols=38  Identities=29%  Similarity=0.323  Sum_probs=34.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~~   66 (146)
                      ..+|++|||+|++|+++|++|+++ | ++|+|+|+.+..+
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~-g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTEL-GYKNWHLYECNDTPG   46 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESSSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEeCCCCCC
Confidence            468999999999999999999997 6 8999999997654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.06  E-value=3.8e-06  Score=66.39  Aligned_cols=39  Identities=36%  Similarity=0.497  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~   66 (146)
                      .++|++|||+|++|+.+|..|+++ +|++|+|+|+.+..+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~g  103 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccc
Confidence            457999999999999999999984 389999999987653

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.06  E-value=3.4e-06  Score=69.23  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      |+||||+|++|+.+|.+|+++ |.+|+|||++
T Consensus         1 DVvVIG~G~AGl~aA~~la~~-G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRA-GKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCCEEEEeCC
Confidence            899999999999999999996 9999999998

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.05  E-value=4e-06  Score=68.43  Aligned_cols=38  Identities=32%  Similarity=0.418  Sum_probs=34.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ..+|++|||+|++|+.+|..|+++ |++|+|||+.+..+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~-g~~v~vlE~~~~~g   69 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPG   69 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSB
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCCC
Confidence            467999999999999999999997 99999999987654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.05  E-value=2.4e-06  Score=65.88  Aligned_cols=33  Identities=27%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      ..+|++|||+|++|+.+|..|++. |++|+|+|+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~-g~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCCEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEec
Confidence            468999999999999999999996 999999998

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.05  E-value=3.5e-06  Score=69.76  Aligned_cols=37  Identities=35%  Similarity=0.482  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH------------hCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE------------ELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~------------~~g~~VlvLE~G~~~   65 (146)
                      ..+||+|||+|++|+++|..|++            . |.+|+|||+...+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~-G~~V~liE~~~~~   54 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSP-KLNITLIESPDVA   54 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSC-SCEEEEEECSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCC-CCeEEEEeCCCCC
Confidence            36899999999999999999999            5 9999999997543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.04  E-value=3.6e-06  Score=64.21  Aligned_cols=33  Identities=33%  Similarity=0.463  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +||++|||+|++|+.+|.+|++. |++|+|+|+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~-g~~v~li~~~   33 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARK-GIRTGLMGER   33 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            48999999999999999999996 9999999863

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.04  E-value=4.2e-06  Score=68.28  Aligned_cols=34  Identities=35%  Similarity=0.614  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ++|++|||+|++|..+|.+|++. |++|+|+|+.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~-g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQL-GLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            69999999999999999999996 99999999986

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=4.7e-06  Score=67.92  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .++|++|||+|++|..+|.+|++. |++|+|+|++
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEccC
Confidence            468999999999999999999997 9999999994

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.03  E-value=4.1e-06  Score=66.38  Aligned_cols=36  Identities=25%  Similarity=0.635  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .|++|||+|++|+.+|..|+++ +|++|+|+|+.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3899999999999999999984 38999999998654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.02  E-value=5.3e-06  Score=68.23  Aligned_cols=32  Identities=25%  Similarity=0.506  Sum_probs=30.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEe
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIE   60 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE   60 (146)
                      .+||++|||+|++|+.+|.+|++ . |++|+|+|
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLH-KKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHc-CCEEEEEe
Confidence            36899999999999999999999 8 99999999

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.01  E-value=5.4e-06  Score=68.35  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEec
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEA   61 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~   61 (146)
                      ..+||++|||+|++|+.+|.+|++ . |++|+|+|+
T Consensus         5 ~~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE~   39 (495)
T 2wpf_A            5 SKAFDLVVIGAGSGGLEAGWNAATLY-GKRVAVVDV   39 (495)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEES
T ss_pred             ccccCEEEECCChhHHHHHHHHHHhc-CCeEEEEec
Confidence            347999999999999999999999 8 999999993

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.01  E-value=7e-06  Score=70.29  Aligned_cols=38  Identities=32%  Similarity=0.498  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+|++|||+|++|+.+|..|++. |++|+|+|+++..
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~-G~~V~liE~~~~~  426 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVR-GYDVVLAEAGRDL  426 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            3568999999999999999999997 9999999998654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.01  E-value=6e-06  Score=69.10  Aligned_cols=38  Identities=34%  Similarity=0.495  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+|++|||+|++|+.+|.+|++. |.+|+|||+++..
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~-g~~v~iiE~~~~~   44 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQA-GMKVLGIEAGEDV   44 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            3478999999999999999999995 9999999998653

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.00  E-value=5.1e-06  Score=71.08  Aligned_cols=37  Identities=38%  Similarity=0.547  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-----hCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE-----ELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~-----~~g~~VlvLE~G~~~   65 (146)
                      .++||+|||+|++|+++|..|++     . |.+|+|||+.+..
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~-Gi~v~viE~~~~~   48 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccC-CCCEEEEeCCCCC
Confidence            36899999999999999999999     7 9999999997654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.00  E-value=5.5e-06  Score=69.24  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHH-HhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLS-EELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~-~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|.+|+ + .|.+|+|+|+.+..
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~-~G~~v~viE~~~~~   44 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHE-LGLTTVGFDKADGP   44 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEECCCCC
Confidence            4689999999999999999999 6 49999999997654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.98  E-value=4.6e-06  Score=68.62  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-C-CCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-L-DWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-~-g~~VlvLE~G~   63 (146)
                      .||++|||+|++|+.+|.+|++. + |++|+|+|+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            58999999999999999999984 2 89999999986

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.97  E-value=8.7e-06  Score=69.66  Aligned_cols=42  Identities=26%  Similarity=0.436  Sum_probs=37.7

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE   67 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~   67 (146)
                      ...++|||+|||+|..|+++|..|++. |++||+||+.+..+.
T Consensus         4 ~~~~~~D~~i~GtGl~~~~~a~~~~~~-g~~vl~id~~~~~gg   45 (650)
T 1vg0_A            4 NLPSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGG   45 (650)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             cCCCcCCEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCCcccC
Confidence            345689999999999999999999996 999999999988753

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.96  E-value=9.5e-06  Score=70.70  Aligned_cols=39  Identities=28%  Similarity=0.342  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+|++|||+|++|+.+|..|+++ |++|+|||+++..+
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~g  372 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNF-GIKVTVLEAKDRIG  372 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEeccccee
Confidence            3468999999999999999999997 99999999976653

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.94  E-value=8.6e-06  Score=66.24  Aligned_cols=38  Identities=34%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~~   66 (146)
                      ..+|++|||+|++|+.+|..|++. |. +|+|+|+++..+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~-g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIG   41 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc-CCCceEEEeCCCCCC
Confidence            468999999999999999999996 88 899999987653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.92  E-value=1.2e-05  Score=65.89  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+|++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~-G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAK-GYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            3468999999999999999999997 9999999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.90  E-value=9.7e-06  Score=68.07  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ...||++|||+|++|+.+|.+|++. |++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~-g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKY-GAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhC-CCeEEEEecc
Confidence            4579999999999999999999996 9999999984

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.90  E-value=1.2e-05  Score=65.46  Aligned_cols=34  Identities=29%  Similarity=0.197  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +|++|||+|.+|+.+|..|+++ |++|+|+|+.+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~-G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL-GVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCcEEEEeccCC
Confidence            6999999999999999999996 999999999764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.89  E-value=1.5e-05  Score=63.93  Aligned_cols=38  Identities=32%  Similarity=0.486  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCc--EEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWR--VLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~--VlvLE~G~~~   65 (146)
                      .+.+|++|||+|++|+.+|.+|++. |++  |+|+|+.+..
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~-g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQN-GFEGRVLVIGREPEI   46 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT-TCCSCEEEEESSSSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHcc-CcCCCEEEEecCCCC
Confidence            3578999999999999999999996 777  9999998764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.88  E-value=1.2e-05  Score=65.64  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHH---hCCCc---EEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSE---ELDWR---VLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~---~~g~~---VlvLE~G~~~   65 (146)
                      .+|++|||+|++|+.+|..|++   . |.+   |+|+|+.+..
T Consensus         2 ~~~V~IIGaG~aGl~aA~~L~~~~~~-G~~~~~V~v~E~~~~~   43 (464)
T 2xve_A            2 ATRIAILGAGPSGMAQLRAFQSAQEK-GAEIPELVCFEKQADW   43 (464)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHHHT-TCCCCEEEEECSSSSS
T ss_pred             CCcEEEECccHHHHHHHHHHHhhhhc-CCCCCcEEEEEcCCCC
Confidence            3699999999999999999998   7 899   9999998654

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.87  E-value=1.1e-05  Score=67.74  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=34.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ..+|++|||+|++|+.+|..|+++ |++|+|||+.+...
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~-g~~v~~~e~~~~~~  162 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPG  162 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSS-SCCEEEECSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence            468999999999999999999996 99999999987653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.84  E-value=1.7e-05  Score=64.09  Aligned_cols=37  Identities=27%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~~~   65 (146)
                      +.+|++|||+|++|+.+|..|++. |.  +|+|+|+.+..
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~-g~~~~V~lie~~~~~   41 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDATVI   41 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCCSC
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHcc-CcCCCEEEEECCCCC
Confidence            468999999999999999999996 77  79999998653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.82  E-value=1.4e-05  Score=65.59  Aligned_cols=37  Identities=11%  Similarity=0.223  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC---CcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD---WRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g---~~VlvLE~G~~~   65 (146)
                      +++|++|||+|++|+.+|.+|++. +   .+|+|+|+.+..
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~-g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTN-YGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH-HGGGSEEEEECSSSCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhc-CCCCCeEEEEECCCCC
Confidence            468999999999999999999996 5   999999998753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.81  E-value=1.8e-05  Score=65.65  Aligned_cols=35  Identities=31%  Similarity=0.441  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ...+|++|||+|++|+.+|..|++. |++|+|+|+.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~-G~~v~lie~~  244 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARK-GIRTGLMGER  244 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhC-CCeEEEEECC
Confidence            4579999999999999999999996 9999999973

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.80  E-value=1.9e-05  Score=62.57  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=30.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~   63 (146)
                      ..+|++|||+|++|+.+|.+|++. |  .+|+|+|+..
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKL-DGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTT-CSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhh-CCCCCEEEEECCC
Confidence            368999999999999999999986 6  5689999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.78  E-value=2.7e-05  Score=66.44  Aligned_cols=37  Identities=27%  Similarity=0.408  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~  408 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEI  408 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            468999999999999999999996 9999999998654

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.78  E-value=2.7e-05  Score=63.01  Aligned_cols=37  Identities=32%  Similarity=0.500  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .+|++|||+|++|+.+|.+|++. ++.+|+|+|+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            57999999999999999999984 37899999998754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.77  E-value=2.2e-05  Score=63.61  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      +|++|||+|++|+.+|.+|++. ++++|+|+|+.+..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5899999999999999999984 38999999998753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.76  E-value=2.2e-05  Score=63.68  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=32.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~   66 (146)
                      .|++|||+|++|+.+|.+|++. ++.+|+|+|+++..+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            5999999999999999999984 489999999997643

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.75  E-value=3.6e-05  Score=61.71  Aligned_cols=37  Identities=14%  Similarity=0.310  Sum_probs=32.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|.+|++. |.  +|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHcc-CCCCeEEEEECCCCC
Confidence            468999999999999999999996 76  59999998754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.75  E-value=2.9e-05  Score=66.99  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+|++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~-G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCc
Confidence            3468999999999999999999996 9999999998764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.75  E-value=2.4e-05  Score=62.38  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~   64 (146)
                      .|++|||+|++|+.+|..|++   . +++|+|||+.+.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~-g~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGS-KADVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGG-GSEEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCC-CCeEEEEeCCCC
Confidence            379999999999999999998   6 899999999875

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.73  E-value=3.1e-05  Score=66.06  Aligned_cols=39  Identities=28%  Similarity=0.321  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+|++|||+|++|+.+|..|++. |++|+|+|+.+..+
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVG  143 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSB
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            3468999999999999999999996 99999999987653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.73  E-value=2.7e-05  Score=69.25  Aligned_cols=38  Identities=29%  Similarity=0.462  Sum_probs=34.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .++|++|||+|++|+.+|.+|++. |++|+|+|+.+..+
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~-G~~V~lie~~~~~G  164 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRS-GARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCC
Confidence            468999999999999999999996 99999999987653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.72  E-value=3.3e-05  Score=63.26  Aligned_cols=37  Identities=24%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .+|++|||+|++|+.+|.+|++. ++.+|+|+|+.+..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            36999999999999999999984 48999999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.71  E-value=1.9e-05  Score=64.98  Aligned_cols=36  Identities=39%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|++|||+|++|+.+|.+|++.  ++|+|+|+++..
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~--~~V~vie~~~~~  142 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY--LTVALIEERGWL  142 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT--CCEEEECTTSSS
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc--CCEEEEeCCCCC
Confidence            357999999999999999999995  999999998765

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.70  E-value=2.6e-05  Score=61.86  Aligned_cols=35  Identities=34%  Similarity=0.484  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..|++|||+|++|..+|.+|++. + +|+|+|+++..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~-g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQT-Y-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhc-C-CEEEEECCCCC
Confidence            46999999999999999999986 7 99999998754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.70  E-value=2.3e-05  Score=63.86  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      ..|++|||+|++|+.+|.+|++. ++.+|+|+|+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            46999999999999999999984 38999999998764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.70  E-value=3.6e-05  Score=62.23  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .|++|||+|++|+.+|.+|++. ++++|+|+|+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            3899999999999999999984 38999999998754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.70  E-value=3.9e-05  Score=63.14  Aligned_cols=40  Identities=25%  Similarity=0.515  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~   66 (146)
                      +.++|++|||+|++|+.+|..|++. .+.+|+|||+.+..+
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4579999999999999999999873 488999999987643

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.69  E-value=4.3e-05  Score=61.05  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~~~   65 (146)
                      .|++|||+|++|+.+|.+|++. |+  +|+|+|+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~-g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQA-KYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhh-CcCCCEEEEeCCCCC
Confidence            4899999999999999999996 77  89999998754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.61  E-value=6.6e-05  Score=60.17  Aligned_cols=36  Identities=28%  Similarity=0.426  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCc--EEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWR--VLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~--VlvLE~G~~~~   66 (146)
                      .|++|||+|++|+.+|.+|++. |++  |+|+|+.+..+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~-g~~~~V~li~~~~~~~   40 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAE-GFEGRISLIGDEPHLP   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEEECSSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHcc-CcCCeEEEEECCCCCC
Confidence            4899999999999999999996 777  99999987643

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.60  E-value=7.3e-05  Score=65.80  Aligned_cols=39  Identities=28%  Similarity=0.321  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+|++|||+|++|+.+|+.|+++ |++|+|+|+.+..+
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~-g~~v~v~E~~~~~G  314 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVG  314 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCcCC
Confidence            3467999999999999999999996 99999999987654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.58  E-value=5.3e-05  Score=61.17  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~   65 (146)
                      ..|++|||+|++|+.+|..|++   . +++|+|||+.+..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~-g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGS-GHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGG-GSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCC-cCEEEEEeCCCCC
Confidence            3699999999999999999998   5 8999999998753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.57  E-value=6e-05  Score=63.04  Aligned_cols=39  Identities=28%  Similarity=0.438  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      +...|++|||+|++|+.+|.+|++. ++.+|+|+|+.+..
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            3457999999999999999999984 37899999998764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.56  E-value=7.8e-05  Score=66.63  Aligned_cols=37  Identities=16%  Similarity=0.198  Sum_probs=33.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|..|++. |+ +|+|+|+.+..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~-G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARL-GYSDITIFEKQEYV  223 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc-CCCcEEEEeCCCCC
Confidence            368999999999999999999996 98 79999998654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.55  E-value=7.9e-05  Score=60.97  Aligned_cols=37  Identities=27%  Similarity=0.267  Sum_probs=32.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|..|++. +  .+|+|+|+.+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKH-HSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHH-CSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhc-CCCCCEEEEeCCCcC
Confidence            357999999999999999999996 6  999999998764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.51  E-value=8e-05  Score=60.86  Aligned_cols=38  Identities=26%  Similarity=0.324  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-h-C----CCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE-E-L----DWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~-~-~----g~~VlvLE~G~~~   65 (146)
                      ..+|++|||+|++|+.+|..|++ . +    +.+|+|+|+.+..
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            35799999999999999999988 5 2    7899999998654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.46  E-value=0.00012  Score=60.64  Aligned_cols=37  Identities=24%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~   66 (146)
                      .|++|||+|++|+.+|.+|++. ++.+|+|+|+.+...
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4899999999999999999984 378999999997653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.33  E-value=0.00023  Score=56.87  Aligned_cols=40  Identities=20%  Similarity=0.185  Sum_probs=33.8

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ..+...++|||+|++|+.+|.+|.. .+.+|+|+|+.+..+
T Consensus         6 ~~~~~~~vIvGgG~AGl~aA~~L~~-~~~~itlie~~~~~~   45 (385)
T 3klj_A            6 HHKSTKILILGAGPAGFSAAKAALG-KCDDITMINSEKYLP   45 (385)
T ss_dssp             --CBCSEEEECCSHHHHHHHHHHTT-TCSCEEEECSSSSCC
T ss_pred             ccCCCCEEEEcCcHHHHHHHHHHhC-CCCEEEEEECCCCCC
Confidence            3457899999999999999999965 599999999987654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.33  E-value=0.0002  Score=58.05  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~~   65 (146)
                      .+||||+|++|..+|.+|++. +  .+|+|+|+++..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~-g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRL-DKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-CSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCCcEEEEeCCCCC
Confidence            589999999999999999986 5  579999998654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.26  E-value=0.00029  Score=55.77  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      .+||||+|++|..+|.+|++. ++.+|+|||+.+.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            589999999999999999885 2468999999764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.25  E-value=0.00024  Score=61.50  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCC--------CcEEEEecCC-CC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELD--------WRVLLIEAGG-DP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g--------~~VlvLE~G~-~~   65 (146)
                      ..+++|||+|++|+.+|++|++. |        ++|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~-g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRL-AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH-HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CcccccCCCceEEEEeccCccc
Confidence            57999999999999999999996 7        8999999987 54

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.21  E-value=0.00056  Score=56.39  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=31.9

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHh-------------CCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEE-------------LDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~-------------~g~~VlvLE~G~~~   65 (146)
                      .+..||+||||+|++|+.+|..|.++             ++.+++.+|+.+..
T Consensus        36 ~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f   88 (501)
T 4b63_A           36 QDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQF   88 (501)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSC
T ss_pred             CCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCC
Confidence            34568999999999999999999874             23467888987653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.18  E-value=0.00025  Score=58.63  Aligned_cols=36  Identities=17%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++..+||||+|++|..+|.+|++. +.+|+|||+.+.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~-~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTK-KYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTT-TCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhC-CCcEEEECCCCC
Confidence            356899999999999999999985 899999999754

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.10  E-value=0.0005  Score=55.41  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      .++|||+|++|..+|.+|++. ++.+|+|||+.+.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            699999999999999999984 3589999999764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.12  E-value=0.0068  Score=48.76  Aligned_cols=36  Identities=19%  Similarity=0.367  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+++|||+|+.|+-+|..|++. |.+|.++|+++..
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRP  184 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCccc
Confidence            46899999999999999999996 9999999998764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.12  E-value=0.011  Score=40.08  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|.|..|..+|..|.+. |++|+++|+.+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHH
Confidence            45799999999999999999996 999999998754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.85  E-value=0.011  Score=47.11  Aligned_cols=35  Identities=23%  Similarity=0.195  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDS-GTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCcc
Confidence            4799999999999999999997 9999999998765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.85  E-value=0.013  Score=39.47  Aligned_cols=33  Identities=24%  Similarity=0.573  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|+|+|..|..+|..|.++ |++|+++|+.+
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            3699999999999999999996 99999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.79  E-value=0.016  Score=39.77  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .-.++|+|+|..|...|..|.+. |++|+++|+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~-g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR-GQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Confidence            34799999999999999999996 9999999986

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.79  E-value=0.0093  Score=45.24  Aligned_cols=34  Identities=15%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+=+|..|++. +.+|.|+|+++..
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKF-ADKVTIVHRRDEL  180 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEeccccc
Confidence            799999999999999999996 9999999998764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.75  E-value=0.014  Score=38.70  Aligned_cols=33  Identities=36%  Similarity=0.523  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..++|+|+|..|..+|..|.+. |++|.++|+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~-g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            3689999999999999999996 99999999853

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.66  E-value=0.013  Score=47.47  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERI  206 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCCcc
Confidence            4799999999999999999997 9999999998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.53  E-value=0.017  Score=46.59  Aligned_cols=35  Identities=23%  Similarity=0.480  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANF-GTKVTILEGAGEI  205 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcc
Confidence            4799999999999999999996 9999999998754

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.50  E-value=0.019  Score=39.49  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|+|.-|..+|..|.+. |.+|.++++.+.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHH
Confidence            45799999999999999999996 899999998643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.49  E-value=0.016  Score=46.76  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~-g~~V~lv~~~~~~  202 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRL-GAEVIVLEYMDRI  202 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCCcc
Confidence            4799999999999999999996 9999999998764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.46  E-value=0.017  Score=46.87  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRL-GAEVTLIEYMPEI  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEEcCCcc
Confidence            4799999999999999999996 9999999998764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=95.36  E-value=0.021  Score=44.87  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSG-GYQLDVVAPCEQV  180 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCcch
Confidence            4799999999999999999996 9999999998764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.35  E-value=0.017  Score=45.47  Aligned_cols=35  Identities=40%  Similarity=0.534  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCee
Confidence            4799999999999999999996 9999999998764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.25  E-value=0.019  Score=43.22  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~-G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKY-GSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHh-CCeeeeecccccc
Confidence            4799999999999999999996 9999999987654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=95.19  E-value=0.023  Score=46.02  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  218 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQPQI  218 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCCcc
Confidence            4799999999999999999996 9999999998765

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.04  E-value=0.026  Score=45.51  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  202 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGL-GAKTHLFEMFDAP  202 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCEEEEEEeCCch
Confidence            3799999999999999999996 9999999998664

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=94.94  E-value=0.033  Score=44.32  Aligned_cols=35  Identities=31%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRL  180 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCcc
Confidence            4799999999999999999996 9999999998764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=94.79  E-value=0.037  Score=45.10  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRK-GKEVVLIDVVDTC  229 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEEcccch
Confidence            4799999999999999999996 9999999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.73  E-value=0.033  Score=42.87  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. +.+|.++|+++..
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~  201 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKN-GSDIALYTSTTGL  201 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECC----
T ss_pred             EEEEECCCcCHHHHHHHHHhc-CCeEEEEecCCCC
Confidence            799999999999999999996 9999999998654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.69  E-value=0.04  Score=36.58  Aligned_cols=32  Identities=22%  Similarity=0.444  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|+|+|..|..+|..|.+. |.+|.++++..
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~-g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            599999999999999999996 89999999853

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=94.62  E-value=0.04  Score=44.61  Aligned_cols=35  Identities=23%  Similarity=0.212  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~-G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSF-GSEVTVVALEDRL  201 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCcc
Confidence            3799999999999999999996 9999999998654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=94.56  E-value=0.041  Score=44.70  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+.+..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~  220 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMDGL  220 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEECCcc
Confidence            4799999999999999999996 9999999998764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.51  E-value=0.046  Score=35.03  Aligned_cols=33  Identities=21%  Similarity=0.458  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~   63 (146)
                      ..++|+|+|..|..++..|.+. | ++|.++++.+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCH
Confidence            4689999999999999999996 7 8999999864

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=94.48  E-value=0.045  Score=44.24  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRL-GADVTAVEFLGHV  213 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCEEEEEeccCcc
Confidence            3799999999999999999996 9999999998764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.46  E-value=0.041  Score=39.92  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|+|+|..|..+|..|.++ |+.|+++|+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~-g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR-KYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            489999999999999999996 99999999764

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.46  E-value=0.026  Score=45.88  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .-+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  221 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVEL-GKKVRMIERNDHI  221 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHT-TCEEEEECCGGGT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCCch
Confidence            35799999999999999999996 9999999998654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=94.46  E-value=0.046  Score=44.06  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  206 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNY-GVDVTIVEFLPRA  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence            4799999999999999999996 9999999998764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.40  E-value=0.052  Score=43.71  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..+++. |.+|.|+|+++..
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYER-GLHPTLIHRSDKI  182 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSCC
T ss_pred             EEEEECCccchhhhHHHHHhc-CCcceeeeeeccc
Confidence            799999999999999999997 9999999999765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=94.38  E-value=0.054  Score=43.47  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -+++|||+|..|+-+|..|++. |.+|.++|+++...
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l  184 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQ-GKNVTMIVRGERVL  184 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCccc
Confidence            3899999999999999999996 99999999987653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=94.32  E-value=0.053  Score=44.30  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRL-GVIVKVFGRSGSV  209 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHT-TCEEEEECCTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEECCcc
Confidence            4799999999999999999996 9999999998765

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=94.31  E-value=0.053  Score=43.47  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAARV  184 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCcc
Confidence            4799999999999999999996 9999999998764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.23  E-value=0.04  Score=44.40  Aligned_cols=35  Identities=14%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  212 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFASEI  212 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcc
Confidence            4789999999999999999996 9999999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.19  E-value=0.057  Score=40.57  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANI-CKKVYLIHRRDGF  178 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEeeCCcc
Confidence            5799999999999999999996 9999999998654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.14  E-value=0.055  Score=40.65  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++|+.+..
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCEEEEEEeCccc
Confidence            3789999999999999999996 8999999998764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.13  E-value=0.061  Score=37.75  Aligned_cols=34  Identities=24%  Similarity=0.189  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhC-CCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G~   63 (146)
                      .-.++|+|.|..|..+|..|.+ . |++|+++|+.+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~-~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRA-RYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHH-HHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-ccCCeEEEEECCH
Confidence            4479999999999999999988 4 89999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=94.13  E-value=0.061  Score=42.73  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKL-GLSVTILEAGDEL  178 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCcc
Confidence            4799999999999999999996 9999999998764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.09  E-value=0.057  Score=43.84  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  220 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGL-GSETHLVIRGETV  220 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCceEEEEeCCcc
Confidence            4799999999999999999996 9999999998764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.03  E-value=0.056  Score=44.20  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  211 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRI  211 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSS
T ss_pred             CeEEEECChHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            3689999999999999999996 9999999998764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.03  E-value=0.059  Score=43.23  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~~   64 (146)
                      -+++|||+|..|+=+|..|++. +.+ |.++++++.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~-~~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHHH-hCCcEEEEeCCCC
Confidence            4799999999999999999996 778 999999864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=93.98  E-value=0.067  Score=42.95  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQ-NYNVNLIDGHERV  184 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHhc-CCEEEEEEcCCch
Confidence            3799999999999999999996 9999999998764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=93.96  E-value=0.062  Score=43.60  Aligned_cols=35  Identities=11%  Similarity=0.129  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+=+|..|++. +.+|.++++.+..
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~-g~~V~li~~~~~~  232 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKY-GAKKLISCYRTAP  232 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHT-TCSEEEEECSSCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHh-CCeEEEEEECCCC
Confidence            3799999999999999999996 9999999997653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.91  E-value=0.072  Score=41.05  Aligned_cols=33  Identities=15%  Similarity=0.425  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|.-|...|..|+++ |++|.++.+..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT-GHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT-TCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCh
Confidence            3689999999999999999996 99999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=93.86  E-value=0.075  Score=42.84  Aligned_cols=35  Identities=11%  Similarity=0.111  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARL-GSKVTVLARNTLF  211 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEECCcc
Confidence            3789999999999999999996 9999999998754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=93.84  E-value=0.064  Score=44.57  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPE-VEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-CSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            4799999999999999999996 999999999876

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=93.82  E-value=0.067  Score=40.57  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+..
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~  194 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDAF  194 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHhc-CCeEEEEecCCcC
Confidence            4799999999999999999996 9999999998654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=93.73  E-value=0.062  Score=44.69  Aligned_cols=36  Identities=11%  Similarity=0.141  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .-.++|||+|..|+-+|..|++. +.+|.|+++.+..
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~-~~~Vtv~~r~~~~  220 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAET-AKELYVFQRTPNW  220 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTT-BSEEEEEESSCCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhh-CCEEEEEEcCCCc
Confidence            34799999999999999999996 8999999999863

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=93.71  E-value=0.074  Score=44.28  Aligned_cols=34  Identities=15%  Similarity=0.282  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQ-AEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            4799999999999999999997 899999999876

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=93.69  E-value=0.079  Score=43.03  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  233 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARL-GAKVTVVEFLDTI  233 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEeccccc
Confidence            689999999999999999997 9999999998765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=93.68  E-value=0.081  Score=42.66  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  209 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARL-GAEVTVVEFAPRC  209 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHh-CCEEEEEecCCcc
Confidence            4789999999999999999996 9999999998764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=93.64  E-value=0.088  Score=43.35  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHL-GIKTTLLELADQV  186 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCCcc
Confidence            799999999999999999996 9999999998764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.62  E-value=0.073  Score=40.87  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|.-|...|..|+++ |++|.++.+..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS-GEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT-SCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCc
Confidence            4689999999999999999996 99999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=93.61  E-value=0.077  Score=40.55  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .-.++|||+|..|+-+|..|++. +.+|.++++.+..
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~-g~~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRF-ARSVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTT-CSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh-CCeEEEEEcCCcC
Confidence            35799999999999999999996 9999999998654

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.55  E-value=0.1  Score=38.97  Aligned_cols=33  Identities=15%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.|||+|..|..+|..|+++ |++|.++++...
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCCEEEEEcCcc
Confidence            478999999999999999996 999999988754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=93.53  E-value=0.1  Score=41.38  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKF-GVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCch
Confidence            4689999999999999999996 9999999998765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=93.52  E-value=0.083  Score=40.04  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+..
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKF-ADEVTVIHRRDTL  187 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEeCCCcC
Confidence            4799999999999999999996 9999999998654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.42  E-value=0.069  Score=40.56  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~v~~~~~~  187 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDT-ARRITLIHRRPQF  187 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEcCCcc
Confidence            4799999999999999999996 9999999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=93.39  E-value=0.087  Score=39.64  Aligned_cols=35  Identities=26%  Similarity=0.231  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+..
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~  180 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGF  180 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCCcc
Confidence            4799999999999999999996 9999999998654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=93.38  E-value=0.1  Score=41.24  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++|+.+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAK-GLEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCcc
Confidence            4699999999999999999996 9999999998765

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=93.35  E-value=0.099  Score=42.22  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLM-GVQTHIIEMLDRA  207 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCCcC
Confidence            4799999999999999999996 9999999998765

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.25  E-value=0.1  Score=39.71  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+.|||+|.-|...|..|+++ |++|.++.|...
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~-g~~V~~~~r~~~   36 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQS-LPHTTLIGRHAK   36 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH-CTTCEEEESSCE
T ss_pred             cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeccC
Confidence            3689999999999999999997 899999998743

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.25  E-value=0.1  Score=43.48  Aligned_cols=31  Identities=13%  Similarity=0.121  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+.
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASL-GGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCEEEEEECC
Confidence            699999999999999999996 9999999997

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=93.24  E-value=0.1  Score=42.19  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHDKV  222 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHc-CCeEEEEEeCCcc
Confidence            4789999999999999999996 9999999998764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.13  E-value=0.11  Score=41.84  Aligned_cols=34  Identities=21%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.+||||.|..|..+|..|.+. |+.|++||+.+.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHH
Confidence            4699999999999999999996 999999998754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.10  E-value=0.1  Score=39.36  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~-g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKY-GSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCcc
Confidence            4699999999999999999996 9999999998764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.00  E-value=0.1  Score=39.45  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+..
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~i~~~~~~  190 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEY-VKNVTIIEYMPKY  190 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-BSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhh-CCcEEEEEcCCcc
Confidence            4689999999999999999996 8999999997654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=92.97  E-value=0.13  Score=41.42  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  215 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARL-GAEVTVLEAMDKF  215 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCc
Confidence            3689999999999999999996 9999999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.93  E-value=0.058  Score=44.11  Aligned_cols=34  Identities=32%  Similarity=0.658  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+||+|+|.-|..+|..|.+. |++|+|||+.+.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~-~~~v~vId~d~~   37 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGE-NNDITIVDKDGD   37 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCST-TEEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHH
Confidence            4699999999999999999986 999999998753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=92.92  E-value=0.14  Score=41.15  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKM-KKTVHVFESLENL  182 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcc
Confidence            3689999999999999999996 9999999998764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.81  E-value=0.16  Score=36.69  Aligned_cols=35  Identities=14%  Similarity=0.307  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...+.|||.|..|..+|..|+++ |++|.++++...
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~-g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIA-GHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT-TCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            34689999999999999999996 999999988653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.80  E-value=0.13  Score=39.21  Aligned_cols=32  Identities=25%  Similarity=0.465  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..|+++ |++|.++++..
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            589999999999999999996 99999998753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=92.77  E-value=0.13  Score=40.30  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .|.|||+|..|...|..++.+ |++|.++|..+
T Consensus         8 ~VaViGaG~MG~giA~~~a~~-G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASG-GFRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            688999999999999999996 99999998754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.67  E-value=0.15  Score=39.48  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ..+.|||+|.-|...|..|+++ |++|.++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~-g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALA-GEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHT-TCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCEEEEEECh
Confidence            3689999999999999999996 9999999884

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=92.66  E-value=0.11  Score=41.46  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .-.++|||+|..|+-+|..|++. ++.+|.++++.+..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45899999999999999999984 47899999998754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=92.61  E-value=0.1  Score=40.15  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~  198 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKN-AASVTLVHRGHEF  198 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTT-SSEEEEECSSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCCC
Confidence            3799999999999999999996 9999999998654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=92.58  E-value=0.16  Score=37.87  Aligned_cols=36  Identities=25%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++++...
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~-g~~v~~~~~~~~~~  190 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSY-STKVYLIHRRDTFK  190 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCeEEEEEeCCCCC
Confidence            4799999999999999999997 99999999987653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.54  E-value=0.15  Score=38.63  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|...|..|+++ |++|.+.++..
T Consensus         6 kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFH-GFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            588999999999999999996 99999998764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.53  E-value=0.15  Score=38.48  Aligned_cols=32  Identities=28%  Similarity=0.340  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|...|..|+++ |++|.++++.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQG-GNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            588999999999999999996 99999998753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.43  E-value=0.17  Score=41.03  Aligned_cols=32  Identities=13%  Similarity=0.067  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  218 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGI-GLDTTVMMRSI  218 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCceEEEEcCc
Confidence            699999999999999999996 99999999874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=92.40  E-value=0.16  Score=41.65  Aligned_cols=35  Identities=11%  Similarity=0.206  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNAT-GRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCcc
Confidence            5799999999999999999996 9999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=92.39  E-value=0.16  Score=42.23  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~  222 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRER-GIEVTLVEMANQV  222 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCcc
Confidence            3799999999999999999996 9999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=92.38  E-value=0.14  Score=42.05  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++|+++..
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~-g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEM  390 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-BSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCccc
Confidence            3799999999999999999996 8999999998764

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.32  E-value=0.16  Score=39.24  Aligned_cols=34  Identities=32%  Similarity=0.486  Sum_probs=30.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      +...+.|||+|..|..+|..|+++ |++|.++++.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~-G~~V~~~~r~   46 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHEN-GEEVILWARR   46 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            356899999999999999999996 9999999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.21  E-value=0.16  Score=39.07  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=28.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .....+.|||+|.-|...|..|+++ |++|.++ +.
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~-G~~V~l~-~~   50 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARA-GHEVILI-AR   50 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHT-TCEEEEE-CC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHC-CCeEEEE-Ec
Confidence            3455789999999999999999996 9999998 54

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=92.02  E-value=0.2  Score=40.81  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTEL-GVPVTVVASQDHV  217 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence            4789999999999999999996 9999999998764

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=91.96  E-value=0.2  Score=41.19  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .++|||+|..|+-+|..|++. |.+|.++|+.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEecc
Confidence            699999999999999999996 9999999985

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=91.91  E-value=0.19  Score=38.40  Aligned_cols=30  Identities=23%  Similarity=0.332  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      .+.|||+|..|...|..|+++ |++|.++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~-g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEEc
Confidence            378999999999999999997 999999998

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=91.88  E-value=0.21  Score=41.61  Aligned_cols=34  Identities=12%  Similarity=0.023  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|||+|..|+=+|..+++. |.+|.|+++...
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~l-G~~VTii~~~~~  257 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSL-GYDVTVAVRSIV  257 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH-TCCEEEEESSCS
T ss_pred             ceEEEECCCHHHHHHHHHHHhc-CCeEEEeccccc
Confidence            3799999999999999999996 999999998543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=91.83  E-value=0.19  Score=41.08  Aligned_cols=36  Identities=19%  Similarity=0.115  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhC--CCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEEL--DWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~--g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++..  |.+|.++|+++..
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            37999999999999999999831  8999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=91.68  E-value=0.19  Score=40.91  Aligned_cols=36  Identities=22%  Similarity=0.117  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++.  +|.+|.++|+.+..
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  225 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI  225 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence            4799999999999999999883  18999999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=91.64  E-value=0.25  Score=40.94  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|+|.|..|..+|.+|.+. |+.|+++|+.+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK-PVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCCEEEEECChHH
Confidence            5799999999999999999996 9999999987654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=91.57  E-value=0.22  Score=38.38  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|..|...|..|+++ |++|.++++.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~-g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4689999999999999999996 99999998753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.53  E-value=0.22  Score=38.01  Aligned_cols=33  Identities=18%  Similarity=0.397  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~   63 (146)
                      ..+.|||+|..|..+|..|++. |+  .|.++++..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~-g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            4689999999999999999996 88  999998864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.51  E-value=0.23  Score=38.12  Aligned_cols=32  Identities=31%  Similarity=0.386  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|.-|...|..|+ + |++|.++.+..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~-g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-L-YHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-c-CCceEEEECCH
Confidence            36899999999999999999 6 99999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=91.42  E-value=0.23  Score=40.19  Aligned_cols=35  Identities=29%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  226 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGL-GVKTTLLHRGDLI  226 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCcc
Confidence            4789999999999999999996 9999999998754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=91.38  E-value=0.23  Score=36.96  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+..
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~-g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANI-CSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCCCC
Confidence            4799999999999999999996 9999999998764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=91.19  E-value=0.27  Score=39.75  Aligned_cols=33  Identities=18%  Similarity=0.150  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGL-GYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCC
Confidence            3689999999999999999996 99999999853

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=91.16  E-value=0.25  Score=40.54  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ...+.|||.|..|+.+|..|+++ |++|.++++..
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~-G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADI-GHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            45789999999999999999996 99999998754

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=91.11  E-value=0.27  Score=39.50  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vt~v~~~~~~  205 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGL-GVKTTLIYRGKEI  205 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence            4789999999999999999996 9999999998754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=91.08  E-value=0.21  Score=37.44  Aligned_cols=35  Identities=23%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~-~~~v~~~~~~~~~  189 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPI-AKEVSIIHRRDKF  189 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTT-BSEEEEECSSSSC
T ss_pred             CEEEEECCCHhHHHHHHHHHhh-CCeEEEEEecCcC
Confidence            4789999999999999999996 8999999998764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=90.80  E-value=0.21  Score=36.90  Aligned_cols=33  Identities=9%  Similarity=-0.034  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|||+|..|+-+|..|++. + +|.++++++.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~-g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDW-G-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGT-S-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhc-C-cEEEEECCCC
Confidence            4789999999999999999997 7 9999998865

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=90.77  E-value=0.42  Score=37.25  Aligned_cols=34  Identities=15%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      ..+.|||+|..|..+|..|++. ++ +|.++|....
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~-g~~~V~L~D~~~~   44 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVKG   44 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECChh
Confidence            4799999999999999999996 87 8999988643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=90.70  E-value=0.38  Score=34.85  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||.|..|...|..|.+. |++|.++++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~-g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGS-GFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4699999999999999999996 89999998864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=90.42  E-value=0.35  Score=34.44  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=28.4

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.||| +|..|...|..|.++ |++|.++++..
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~-g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            378999 999999999999996 89999998753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=90.41  E-value=0.3  Score=39.32  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -+++|||+|..|+-+|..|++..+.+|.++|+.+..
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI  195 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence            479999999999999999998338999999998754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=90.29  E-value=0.33  Score=36.66  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=28.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|||+|..|+-+|..|++. + +|.++++..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~-~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTV-A-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhh-C-CEEEEECCC
Confidence            4799999999999999999996 6 699998874

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=90.27  E-value=0.29  Score=39.89  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.+.|||+|..|..+|..|+++ |+.|+++|+..
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~-G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARV-GISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            3588999999999999999996 99999998754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.21  E-value=0.14  Score=37.36  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=28.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.++|+|.|..|..+|..|.+. |+ |+++|+.+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~-g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGS-EV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTS-EE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhC-Ce-EEEEECCH
Confidence            44799999999999999999986 88 99999764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=90.20  E-value=0.24  Score=37.86  Aligned_cols=34  Identities=18%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.++|||+|..|...+..|.+. |.+|.|++...
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~-Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPT-GCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG-TCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCC
Confidence            45799999999999999999996 99999998753

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=89.98  E-value=0.35  Score=39.37  Aligned_cols=32  Identities=31%  Similarity=0.340  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|..+|..|+++ |++|.++++.+
T Consensus         4 kI~VIG~G~vG~~lA~~La~~-G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAEL-GANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CCEEEEEECCH
Confidence            588999999999999999996 99999998864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=89.98  E-value=0.4  Score=35.50  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .-.++|||+|..|...|..|.+. |.+|.|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~-GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQE-GAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGG-CCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCC
Confidence            45899999999999999999996 9999999764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=89.97  E-value=0.49  Score=36.38  Aligned_cols=33  Identities=18%  Similarity=0.426  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      ..+.|||+|..|..+|..|+++ |+ +|.++++..
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~-g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKD-NLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCc
Confidence            4689999999999999999997 87 999998864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=89.97  E-value=0.28  Score=40.24  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-------------CCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-------------LDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-------------~g~~VlvLE~G~~~   65 (146)
                      ..++|||+|+.|+=+|.+|++.             ...+|.|+|+++..
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            4699999999999999998752             13689999999875

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=89.93  E-value=0.35  Score=39.64  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.+.|||+|..|...|..|+++ |+.|++.|+.+.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLA-GIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEECcHH
Confidence            3688999999999999999996 999999987643

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=89.91  E-value=0.44  Score=35.16  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...+-|||.|..|..+|..|+++ |++|.+.++.+.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~-G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADL-GHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCChh
Confidence            45788999999999999999996 999999987643

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=89.88  E-value=0.51  Score=35.02  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|.|+|.-|..++.+|.++ |++|.++.+...
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQ-GHEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcc
Confidence            589999999999999999996 999999998754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.84  E-value=0.4  Score=35.76  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      ...++|||+|-.|+.+|..|++. |. ++.|++...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~-Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence            45899999999999999999997 75 889999875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=89.61  E-value=0.38  Score=37.86  Aligned_cols=33  Identities=30%  Similarity=0.345  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|.-|..+|..|+++ |++|.+.++.+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~-G~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARK-GQKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTT-TCCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4799999999999999999996 99999998863

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=89.60  E-value=0.32  Score=39.20  Aligned_cols=32  Identities=31%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|..+|..|+++ |++|.++++.+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~-G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            478999999999999999996 99999998753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=89.44  E-value=0.44  Score=38.62  Aligned_cols=36  Identities=11%  Similarity=0.127  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~   65 (146)
                      .-+++|||+|..|.=+|..+.+. |. +|.++++.+..
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQ-GATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHc-CCCEEEEEEeCCcc
Confidence            34799999999999999998886 65 69999998654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=89.15  E-value=0.41  Score=38.78  Aligned_cols=35  Identities=20%  Similarity=0.232  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHH-------------------hCCC-cEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSE-------------------ELDW-RVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~-------------------~~g~-~VlvLE~G~~   64 (146)
                      -.++|||+|..|+-+|..|++                   +.+. +|.|+++.+.
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            479999999999999999983                   2365 7999999764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=89.13  E-value=0.54  Score=38.28  Aligned_cols=36  Identities=17%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+-|||.|.-|+.+|..|+++ |++|+++++.+..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~-G~~V~~~D~~~~k   43 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF-GHEVVCVDKDARK   43 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence            45788999999999999999996 9999999987653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.13  E-value=0.53  Score=34.80  Aligned_cols=34  Identities=24%  Similarity=0.450  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|.|+|.-|..++.+|.++ |++|.++.|...
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~~   39 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQ-GWRIIGTSRNPD   39 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGG-TCEEEEEESCGG
T ss_pred             CcEEEECCcHHHHHHHHHHHHC-CCEEEEEEcChh
Confidence            3699999999999999999997 999999988643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=89.09  E-value=0.46  Score=36.55  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +-.+-|||.|..|...|..|+ + |+.|.+.++.+
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-a-G~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-S-KHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-c-CCEEEEEECCH
Confidence            557899999999999999999 7 99999998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=89.01  E-value=0.5  Score=35.52  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.|||.|..|..+|..|+++ |++|.+.++.+.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKA-GCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCeEEEEcCCHH
Confidence            478999999999999999996 999999988654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.95  E-value=0.49  Score=35.96  Aligned_cols=33  Identities=24%  Similarity=0.154  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+-|||.|..|..+|..|+++ |++|.+.++.+
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRA-GLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            4688999999999999999996 99999998754

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=88.94  E-value=0.49  Score=36.17  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+-|||.|..|..+|..|++. |++|.+.++.+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKN-GFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCHH
Confidence            4689999999999999999996 999999988654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=88.86  E-value=0.28  Score=38.25  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|...|..|+++ |++|.++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~-G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK-CREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-EEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            689999999999999999996 89999998753

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=88.86  E-value=1  Score=36.28  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      .-..-.++|+|+|.+|..+|.-|... |. +|.++|+..
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~-Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAA-GATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHc-CCCeEEEEECCC
Confidence            34467899999999999999999887 77 999999964

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=88.83  E-value=0.43  Score=37.43  Aligned_cols=33  Identities=12%  Similarity=0.144  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC-------CcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD-------WRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g-------~~VlvLE~G~~   64 (146)
                      .+.|||+|..|..+|..|+++ |       ++|.++++...
T Consensus        23 kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChh
Confidence            599999999999999999996 8       89999988654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=88.79  E-value=0.37  Score=41.37  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=30.4

Q ss_pred             ccEEEEC--CCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVG--GGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG--~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|||  +|..|+-+|..|++. |.+|.++|+++
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~-G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHc-CCEEEEEeccc
Confidence            3799998  999999999999996 99999999987

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=88.78  E-value=0.52  Score=36.14  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..|+.+ ++  .|.++|...
T Consensus         2 kI~VIGaG~vG~~la~~la~~-g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR-GSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCH
Confidence            478999999999999999996 88  899998753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=88.76  E-value=0.55  Score=34.57  Aligned_cols=32  Identities=25%  Similarity=0.608  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~   63 (146)
                      .+.|||.|..|...|..|.+. | ++|.+.++.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCeEEEECCCH
Confidence            378999999999999999996 8 9999998753

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=88.71  E-value=0.47  Score=39.05  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      ..+.|||.|..|..+|..|++++|+ +|+++++...
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4689999999999999999994489 9999998766

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=88.67  E-value=0.66  Score=35.93  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+|+|..|..+|..+.+. |++|++++..++
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~-G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKA-GMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            378999999999999888775 999999998654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=88.65  E-value=0.71  Score=32.50  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=28.4

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.|..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNR-GHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhC-CCEEEEEEcCc
Confidence            3789995 99999999999997 99999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=88.64  E-value=0.22  Score=33.52  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.+.|||+|..|...|..|.+. |.+|.+.++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~-g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYP-QYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTT-TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCH
Confidence            34799999999999999999885 88899998864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=88.58  E-value=0.91  Score=36.44  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=31.5

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAG   62 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G   62 (146)
                      ......++|+|+|.+|..+|..|... |. +|.++++.
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~-G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDL-GVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECC
Confidence            34567999999999999999999987 66 89999997

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.52  E-value=0.51  Score=38.79  Aligned_cols=32  Identities=25%  Similarity=0.465  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|...|..|+++ |++|.+.|+..
T Consensus         7 kVgVIGaG~MG~~IA~~la~a-G~~V~l~D~~~   38 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASH-GHQVLLYDISA   38 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            588999999999999999996 99999998764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=88.51  E-value=0.47  Score=35.67  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+-|||.|..|..+|..|+++ |++|.+.++.+.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~-G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRA-GFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-TCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCHH
Confidence            478999999999999999997 999999988654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=88.45  E-value=0.59  Score=38.49  Aligned_cols=35  Identities=11%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+..
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~-~~~vtv~~r~~~~  221 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTPHF  221 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCCC
T ss_pred             CEEEEECCCccHHHHHHHHhhc-CceEEEEEcCCcc
Confidence            4789999999999999999997 8999999997654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=88.34  E-value=0.55  Score=38.21  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh---CCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE---LDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~---~g~~VlvLE~G~~   64 (146)
                      -.++|||+|..|+-+|..|++.   .|.+|.++|+.+.
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~  218 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG  218 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence            4799999999999999999862   2688999998753

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=88.23  E-value=0.7  Score=32.73  Aligned_cols=31  Identities=19%  Similarity=0.391  Sum_probs=28.2

Q ss_pred             EEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          32 FIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ++|.|+ |.-|..++.+|.++ |++|.++.|..
T Consensus         3 ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARRR-GHEVLAVVRDP   34 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEcCCCHHHHHHHHHHHHC-CCEEEEEEecc
Confidence            789997 99999999999997 99999998864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=88.23  E-value=0.46  Score=36.05  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...+.|||.|..|..+|..|+++ |++|.+.++.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEW-PGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTS-TTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCHH
Confidence            35799999999999999999996 999999998765

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=88.21  E-value=0.41  Score=36.97  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCC-------CcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELD-------WRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g-------~~VlvLE~G~~   64 (146)
                      ..+.|||+|..|...|..|+++ |       ++|.++++...
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChh
Confidence            3689999999999999999996 7       89999988654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=88.16  E-value=0.41  Score=36.17  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=27.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhC----C-CcEEEEec
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEEL----D-WRVLLIEA   61 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~----g-~~VlvLE~   61 (146)
                      ..+.|||+|..|...|..|++++    | ++|.++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            36899999999999999999842    7 89999987

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=88.12  E-value=0.62  Score=35.43  Aligned_cols=32  Identities=22%  Similarity=0.493  Sum_probs=29.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.||| .|..|..+|..|++. |++|.++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~-G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCeEEEEECCc
Confidence            689999 999999999999996 99999998764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=88.12  E-value=0.63  Score=34.97  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|+|+|-.|..+|..|++. |.+|.+..|..
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~-G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSL-DCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCEEEEEECCH
Confidence            4699999999999999999997 89999997753

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=88.09  E-value=0.63  Score=34.60  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|...|..|.+. |++|.++++.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            378999999999999999996 89999998753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=88.03  E-value=0.7  Score=35.88  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      ..+.|||+|..|..+|..|++. |+ +|.++|....
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~-g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK-DLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCHH
Confidence            4799999999999999999996 87 8999988643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=87.87  E-value=0.77  Score=31.89  Aligned_cols=33  Identities=15%  Similarity=0.332  Sum_probs=29.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.|...
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~~   38 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSS   38 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeChh
Confidence            5889998 99999999999997 999999988643

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=87.85  E-value=0.64  Score=35.85  Aligned_cols=32  Identities=28%  Similarity=0.372  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..|+++ |+  .|.++++..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~-g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCCh
Confidence            478999999999999999996 88  899998753

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=87.81  E-value=0.64  Score=35.54  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..|+++ |  ..|.++++..
T Consensus         3 kI~VIGaG~~G~~la~~L~~~-g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEcCCH
Confidence            478999999999999999996 7  7899998854

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=87.73  E-value=0.89  Score=33.39  Aligned_cols=34  Identities=15%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCC----CcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELD----WRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g----~~VlvLE~G~~   64 (146)
                      ..+.|||.|..|...|..|.++ |    ++|.+.++...
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~-g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANA-NIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH-TSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCCCCCeEEEEeCCcc
Confidence            4689999999999999999996 7    79999988654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=87.72  E-value=0.73  Score=37.19  Aligned_cols=35  Identities=14%  Similarity=0.108  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...++|||+|..|..+|..+... |.+|++.|+.+.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            45899999999999999988886 999999988754

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=87.52  E-value=0.62  Score=38.04  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ...+.|||.|..|+.+|..++++ |++|+.+|-..
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~-G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALL-GHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            45789999999999999999997 99999998653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=87.51  E-value=0.45  Score=37.58  Aligned_cols=30  Identities=17%  Similarity=0.300  Sum_probs=26.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEe
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIE   60 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE   60 (146)
                      .+.|||+|..|...|..|+++.|++|.+++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            588999999999999999873389999998

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=87.45  E-value=0.74  Score=34.99  Aligned_cols=34  Identities=15%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+.|||.|..|...|..|.+. |++|.+.++...
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~-g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKM-GHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence            4699999999999999999996 899999988643

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=87.39  E-value=0.83  Score=35.05  Aligned_cols=34  Identities=29%  Similarity=0.541  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      .+.|||+|..|..+|..|++. .++.|.++|+...
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            478999999999999999984 2789999998653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=87.15  E-value=0.85  Score=35.05  Aligned_cols=35  Identities=14%  Similarity=0.281  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCC----CcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELD----WRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g----~~VlvLE~G~~   64 (146)
                      ...+.|||.|..|..+|..|.++ |    ++|.+.++...
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~-G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAA-GVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHT-TSSCGGGEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCCCcceEEEECCCcc
Confidence            34699999999999999999996 7    89999988653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=87.11  E-value=0.79  Score=36.02  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|+|+|..|..+|..+... |.+|+++++..
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGM-GAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            5789999999999999999886 89999998764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=87.08  E-value=0.8  Score=34.94  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ...+-|||.|..|..+|..|.++ |++|.+.++.+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQ-GKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            34789999999999999999996 99999998764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=87.06  E-value=0.62  Score=35.79  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||.|..|..+|..|++. |++|.+.++..
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEA-GYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhC-CCeEEEEcCCH
Confidence            3689999999999999999996 99999998764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=87.05  E-value=0.75  Score=35.21  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G   62 (146)
                      ..+-|||.|..|..+|..|+++ |+ +|.+.++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCC
Confidence            4689999999999999999997 88 99999985

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.04  E-value=0.89  Score=32.68  Aligned_cols=35  Identities=14%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|.|+ |.-|..++.+|.++ |++|.++.|...
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~   56 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNEE   56 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSGG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhC-CCeEEEEECChH
Confidence            346899997 99999999999996 999999988643

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=86.99  E-value=1.1  Score=33.50  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=29.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|.|+ |+-|..++.+|.++ |++|.++-|.+.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~-G~~V~~l~R~~~   35 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNAR-GHEVTLVSRKPG   35 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCC
Confidence            3789998 99999999999997 999999988644

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=86.86  E-value=0.5  Score=38.35  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...-|||.|.-|+.+|..|+++ |++|+++++-+.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~-G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKH-GVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHC-CCEEEEEECCHH
Confidence            4678999999999999999997 999999988654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=86.80  E-value=0.73  Score=37.19  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.+.|||.|.+|..+|..|.++ |++|.+.|+..
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~-G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKL-GAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCEEEEEeCCc
Confidence            4689999999999999999996 99999999865

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=86.76  E-value=0.83  Score=37.63  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=31.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +...+-|||.|..|..+|..|+++ |++|.+.++-+
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADH-GFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            356899999999999999999996 99999998754

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=86.73  E-value=0.83  Score=34.04  Aligned_cols=32  Identities=22%  Similarity=0.413  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~   63 (146)
                      .+.|||.|..|...|..|.+. |+  +|.+.++.+
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhc-CCCcEEEEEeCCH
Confidence            478999999999999999986 87  899988753

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=86.73  E-value=0.44  Score=42.30  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+.+..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~-G~~Vtvv~~~~~~  319 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAAT-GGVVAVIDARSSI  319 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGG-TCCSEEEESCSSC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHc-CCcEEEEECCCcc
Confidence            3799999999999999999996 8899999998754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=86.68  E-value=0.78  Score=34.43  Aligned_cols=32  Identities=22%  Similarity=0.436  Sum_probs=28.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||. |..|..+|..|.++ |++|.+.++..
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDS-AHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            6899999 99999999999996 89999998753

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=86.64  E-value=0.75  Score=35.39  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~   63 (146)
                      ..+-|||.|..|..+|..|+++ | ++|.+.++.+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~-G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGR-NAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            3589999999999999999996 9 9999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=86.59  E-value=0.72  Score=41.18  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      .++|||+|..|+=+|..+.+. |. +|.++++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~-G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRC-GARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHc-CCCEEEEEEecC
Confidence            899999999999999999986 75 899999986

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=86.51  E-value=0.8  Score=36.64  Aligned_cols=35  Identities=11%  Similarity=0.074  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|||+|..|..+|..+... |.+|+++++.+.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            45899999999999999998886 899999988653

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=86.47  E-value=0.62  Score=37.46  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+.|||.|.+|..+|..|.++ |++|.+.|.....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~-G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTT-TCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHhC-CCEEEEEECCCCc
Confidence            589999999999999888886 9999999987544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=86.45  E-value=0.81  Score=34.27  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|...|..|.+. |++|.+.++.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKH-GYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT-TCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            478999999999999999996 89999998864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=86.41  E-value=0.81  Score=37.47  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.++-|||.|..|..+|..|+++ |++|.+.++.+
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESR-GYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            45899999999999999999996 99999998753

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=86.37  E-value=0.92  Score=35.56  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|+|+|..|..++..+... |.+|.++++..
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            5799999999999999999886 88999998764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=86.36  E-value=1  Score=33.56  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|.|+ |.-|..++.+|.++ |++|.++.+...
T Consensus         8 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~   42 (321)
T 3vps_A            8 HRILITGGAGFIGGHLARALVAS-GEEVTVLDDLRV   42 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCCEEEECCCSS
T ss_pred             CeEEEECCCChHHHHHHHHHHHC-CCEEEEEecCCc
Confidence            46899998 99999999999997 999999998654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=86.26  E-value=0.73  Score=34.56  Aligned_cols=33  Identities=12%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||.|..|...|..|.+. |++|.++++.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            3689999999999999999996 89999998754

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=86.26  E-value=0.71  Score=39.82  Aligned_cols=32  Identities=31%  Similarity=0.520  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+-|||+|..|..+|..|+++ |+.|++.|+.+
T Consensus       314 kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~~  345 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILS-NYPVILKEVNE  345 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             EEEEEcCCHhhHHHHHHHHhC-CCEEEEEECCH
Confidence            588999999999999999996 99999998753

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=86.15  E-value=0.43  Score=34.60  Aligned_cols=34  Identities=24%  Similarity=0.510  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEE-EecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLL-IEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~Vlv-LE~G~~   64 (146)
                      ..+.|||+|..|...|..|.++ |++|.+ .++...
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~-g~~V~~v~~r~~~   58 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAA-QIPAIIANSRGPA   58 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHT-TCCEEEECTTCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCCHH
Confidence            4789999999999999999996 899988 776543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=86.06  E-value=0.88  Score=37.18  Aligned_cols=31  Identities=32%  Similarity=0.471  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ++-|||.|..|..+|..|+++ |++|.+.++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~-G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            588999999999999999996 9999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.95  E-value=0.93  Score=34.91  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~   63 (146)
                      ..+.|||.|..|...|..|.+. |+  +|.+.++.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCH
Confidence            4689999999999999999996 88  899998764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=85.93  E-value=0.94  Score=35.68  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ...+.|||.|..|..+|..|+++ |++|.+.++.+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~-G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKG-GHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CCEEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            45789999999999999999996 99999998864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=85.90  E-value=0.93  Score=37.06  Aligned_cols=34  Identities=15%  Similarity=0.279  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhC-CCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G~   63 (146)
                      ..+.|||.|..|+.+|..|+++. |++|.++++..
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            46999999999999999999963 68999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=85.77  E-value=0.86  Score=36.83  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-------------------CC-CcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-------------------LD-WRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-------------------~g-~~VlvLE~G~~   64 (146)
                      -.++|||+|..|+=+|..|++.                   .+ .+|.|+++.+.
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            4799999999999999999872                   13 59999999764

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=85.65  E-value=0.86  Score=33.58  Aligned_cols=30  Identities=23%  Similarity=0.242  Sum_probs=26.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      .+-|||.|..|...|..|++. |++|.+.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~-g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSR-GVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHC-CCeEEEeCC
Confidence            367999999999999999996 999998766

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=85.62  E-value=0.8  Score=37.28  Aligned_cols=34  Identities=44%  Similarity=0.629  Sum_probs=29.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|+|-.|..+|..|.+  +++|.+||+...
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~--~~~v~iIE~d~~  268 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ--TYSVKLIERNLQ  268 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT--TSEEEEEESCHH
T ss_pred             ccEEEEEcchHHHHHHHHHhhh--cCceEEEecCHH
Confidence            3479999999999999999965  689999999653

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=85.59  E-value=0.74  Score=34.61  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|+|+|-+|..+|..|.+. |.+|.|..|..
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~-G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQA-QQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHT-TCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            4699999999999999999997 79999998764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=85.54  E-value=0.97  Score=36.14  Aligned_cols=35  Identities=14%  Similarity=0.196  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|||+|..|..+|..+... |.+|+++++...
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            34789999999999999988875 889999988654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=85.51  E-value=1.3  Score=34.33  Aligned_cols=33  Identities=24%  Similarity=0.481  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      ..+.|||+|..|..+|..|+.. ++ +|.++|.-.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~-g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQK-NLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCH
Confidence            4689999999999999999996 77 899998754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=85.48  E-value=1.3  Score=33.51  Aligned_cols=35  Identities=14%  Similarity=0.244  Sum_probs=29.9

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|.|+ |.-|..++.+|.++ |++|.++.+...
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~   54 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQ-GRTVRGFDLRPS   54 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHT-TCCEEEEESSCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCC
Confidence            457999998 99999999999997 999999998753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=85.47  E-value=1.1  Score=35.32  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|+|..|..++..+... |.+|++.++.+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            45799999999999999988875 889999998654

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=85.41  E-value=0.89  Score=34.11  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||.|..|...|..|.+. |++|.+.++.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKE-GVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4688999999999999999996 89999998753

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=85.35  E-value=1.4  Score=31.70  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=27.9

Q ss_pred             EEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          32 FIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++|.|+ |.-|..+|.+|.++ |++|.++.+...
T Consensus         4 vlVtGasg~iG~~l~~~L~~~-g~~V~~~~r~~~   36 (255)
T 2dkn_A            4 IAITGSASGIGAALKELLARA-GHTVIGIDRGQA   36 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             EEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCChh
Confidence            688886 88999999999996 999999988654

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=85.26  E-value=1.1  Score=36.57  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++-|||.|..|..+|..|+++ |++|.+.++..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~-G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            3688999999999999999996 99999998854

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=85.23  E-value=1.2  Score=32.92  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~   63 (146)
                      ..+.|||.|..|...|..|.+. |++ |.+.++..
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRK-GFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC-CCeEEEEEeCCH
Confidence            4699999999999999999997 888 88888753

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=85.19  E-value=0.76  Score=37.98  Aligned_cols=36  Identities=14%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+-++||+|.|..|..+|.+|.+. ++.|+++|..+.
T Consensus       126 ~~~hviI~G~g~~g~~la~~L~~~-~~~vvvid~~~~  161 (565)
T 4gx0_A          126 TRGHILIFGIDPITRTLIRKLESR-NHLFVVVTDNYD  161 (565)
T ss_dssp             CCSCEEEESCCHHHHHHHHHTTTT-TCCEEEEESCHH
T ss_pred             cCCeEEEECCChHHHHHHHHHHHC-CCCEEEEECCHH
Confidence            356899999999999999999996 999999998643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=85.03  E-value=1.2  Score=35.26  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.++|+|+|..|..+|..+... |.+|++.++..
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGM-GATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            34799999999999999999886 88999998753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=84.86  E-value=0.84  Score=38.78  Aligned_cols=35  Identities=17%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             cEEEEC--CCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVG--GGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG--~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      +++|||  +|..|+-+|..|++. +.+|.++|+.+...
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~-g~~Vtlv~~~~~l~  561 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQK-GYEVSIVTPGAQVS  561 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHT-TCEEEEEESSSSTT
T ss_pred             EEEEEcCCCCccHHHHHHHHHhC-CCeeEEEecccccc
Confidence            599999  999999999999996 99999999987643

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=84.83  E-value=1.2  Score=33.50  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|..|..+|..|.+. |.+|.+.++..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~-g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKE-GAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHc-CCEEEEEECCH
Confidence            4699999999999999999997 78999998763

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=84.80  E-value=1.4  Score=33.46  Aligned_cols=35  Identities=20%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|+|-+|..+|..|.+. |.+|.|..|-..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~-G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQ-GLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            34789999999999999999997 799999988654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=84.64  E-value=1.2  Score=34.54  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G   62 (146)
                      -.+.|||+|..|..+|..|+++ ++ .|.++|..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~-g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQK-ELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEecc
Confidence            4689999999999999999996 88 89999886

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=84.64  E-value=1.2  Score=34.96  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|..+|..|.+. |++|.+.++.+
T Consensus        10 kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr~~   41 (341)
T 3ktd_A           10 PVCILGLGLIGGSLLRDLHAA-NHSVFGYNRSR   41 (341)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            588999999999999999996 99999998764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=84.39  E-value=1.4  Score=33.41  Aligned_cols=34  Identities=15%  Similarity=0.207  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.+.|||.|..|..+|..|... |.+|++.++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAAL-GAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            45799999999999999999886 89999998764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=84.38  E-value=1.1  Score=34.13  Aligned_cols=34  Identities=12%  Similarity=0.135  Sum_probs=29.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      .-.++|+|+|-+|..+|..|.+. |. +|.|..|-.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~-G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLST-AAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            34699999999999999999996 76 899987753

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=84.35  E-value=1.4  Score=36.18  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..++-|||.|..|..+|..|+++ |++|.+.++.+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~-G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            45789999999999999999996 999999988653

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=84.34  E-value=0.84  Score=39.29  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.+-|||+|..|...|..|+++ |+.|++.|+.+
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASK-GTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhC-CCEEEEEECCH
Confidence            3688999999999999999996 99999998753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=84.33  E-value=1.2  Score=34.18  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=29.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~   63 (146)
                      ...+.|||+|..|...|..|+.+ +.  .+.|+|...
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAK-GIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCc
Confidence            45799999999999999999986 77  899998864

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=84.24  E-value=1.5  Score=32.70  Aligned_cols=32  Identities=25%  Similarity=0.579  Sum_probs=28.4

Q ss_pred             EEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          32 FIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++|.|+ |.-|..++.+|.++ |++|.++.+...
T Consensus         3 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~   35 (312)
T 3ko8_A            3 IVVTGGAGFIGSHLVDKLVEL-GYEVVVVDNLSS   35 (312)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSS
T ss_pred             EEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCC
Confidence            789998 99999999999996 999999987543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=84.21  E-value=1.4  Score=33.43  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.+.|||.|..|..+|..|... |.+|++.++-.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAAL-GANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            44799999999999999999986 89999998754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=84.13  E-value=1.3  Score=34.07  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      ..+.|||+|..|...|..|+.. ++ +|.++|...
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~-g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCCeEEEEeCCc
Confidence            3589999999999999999986 75 899998753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=84.11  E-value=1.2  Score=36.80  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.++|+|+|..|..+|..|+.. |.+|++.|+.+
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~-GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQA-GARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            44689999999999999999996 99999998753

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=84.07  E-value=1.4  Score=35.82  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++-|||.|..|..+|..|+++ |++|.+.++..
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~-G~~V~v~dr~~   38 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESR-GYTVAIYNRTT   38 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhC-CCEEEEEcCCH
Confidence            5799999999999999999996 99999998753

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=84.06  E-value=1.5  Score=32.95  Aligned_cols=33  Identities=30%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.+...
T Consensus         5 ~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~   38 (345)
T 2z1m_A            5 RALITGIRGQDGAYLAKLLLEK-GYEVYGADRRSG   38 (345)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCCS
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEECCCc
Confidence            4889997 99999999999996 999999988643

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=83.93  E-value=1  Score=35.86  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=27.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|..+|..|++  |++|.++++.+
T Consensus         2 kI~VIG~G~vG~~~A~~La~--G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL--QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC--CCEEEEEECCH
Confidence            47899999999999999997  79999998753

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=83.90  E-value=0.53  Score=36.22  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+|.|..|..+|.+|.++ |+ |+++|+.+.
T Consensus       117 ~viI~G~G~~g~~l~~~L~~~-g~-v~vid~~~~  148 (336)
T 1lnq_A          117 HVVICGWSESTLECLRELRGS-EV-FVLAEDENV  148 (336)
T ss_dssp             EEEEESCCHHHHHHHTTGGGS-CE-EEEESCGGG
T ss_pred             CEEEECCcHHHHHHHHHHHhC-Cc-EEEEeCChh
Confidence            699999999999999999986 88 999998653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.77  E-value=0.94  Score=33.30  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             ccEEEECC-CH-HHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGG-GS-AGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~-G~-aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      --++|.|+ |. -|..+|.+|+++ |.+|+++.+..
T Consensus        23 k~vlITGasg~GIG~~~a~~l~~~-G~~V~~~~r~~   57 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRALLE-GADVVISDYHE   57 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHC-CCEEEEecCCH
Confidence            35889998 75 899999999997 99999998753

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=83.74  E-value=1.5  Score=33.00  Aligned_cols=32  Identities=22%  Similarity=0.226  Sum_probs=28.3

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          30 FDFIIVG-GGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      -.++|+| +|-.|..+|..|++. |.+|.++.|.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~-G~~V~i~~R~  152 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRK  152 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEECC
Confidence            4689999 899999999999997 8899998775

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=83.60  E-value=1.5  Score=32.07  Aligned_cols=32  Identities=9%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC----cEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW----RVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~----~VlvLE~G~   63 (146)
                      .+.|||.|..|...|..|.++ |+    +|.+.++.+
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~~-g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMINK-NIVSSNQIICSDLNT   39 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TSSCGGGEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHhC-CCCCCCeEEEEeCCH
Confidence            588999999999999999996 87    999998864

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=83.53  E-value=1.3  Score=31.36  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=29.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|.| +|.-|..++.+|.++ |++|.++.|...
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~~R~~~   35 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKVE   35 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTS-SCEEEEEESSGG
T ss_pred             eEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCcc
Confidence            378999 799999999999996 999999998754

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=83.15  E-value=1.7  Score=33.64  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|...|..|++. |++|.+.++.+
T Consensus        18 ~I~IIG~G~mG~alA~~L~~~-G~~V~~~~~~~   49 (338)
T 1np3_A           18 KVAIIGYGSQGHAHACNLKDS-GVDVTVGLRSG   49 (338)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECCTT
T ss_pred             EEEEECchHHHHHHHHHHHHC-cCEEEEEECCh
Confidence            588999999999999999996 89999988754

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=83.02  E-value=1.7  Score=30.76  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=27.8

Q ss_pred             EEEEC-CCHHHHHHHHHHH-HhCCCcEEEEecCCC
Q psy3408          32 FIIVG-GGSAGAVLANRLS-EELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG-~G~aG~~~A~~L~-~~~g~~VlvLE~G~~   64 (146)
                      ++|.| +|.-|..+|.+|. +. |++|.++.|...
T Consensus         8 vlVtGasg~iG~~~~~~l~~~~-g~~V~~~~r~~~   41 (221)
T 3r6d_A            8 ITILGAAGQIAQXLTATLLTYT-DMHITLYGRQLK   41 (221)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHC-CCEEEEEESSHH
T ss_pred             EEEEeCCcHHHHHHHHHHHhcC-CceEEEEecCcc
Confidence            89999 5999999999999 65 999999988644

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=83.00  E-value=1.7  Score=32.27  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..|.+. |.+|.+.++-.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~-g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREA-GLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            799999999999999999986 77999998753

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=82.97  E-value=1.4  Score=35.78  Aligned_cols=33  Identities=30%  Similarity=0.331  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .-.++|||+|..|...+..|.+. |.+|.|++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~-ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-cCEEEEEcCC
Confidence            34689999999999999999996 9999999874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=82.84  E-value=1.2  Score=31.66  Aligned_cols=33  Identities=18%  Similarity=0.401  Sum_probs=29.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.|...
T Consensus         6 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~   39 (227)
T 3dhn_A            6 KIVLIGASGFVGSALLNEALNR-GFEVTAVVRHPE   39 (227)
T ss_dssp             EEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCGG
T ss_pred             EEEEEcCCchHHHHHHHHHHHC-CCEEEEEEcCcc
Confidence            5899995 99999999999996 999999998754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=82.76  E-value=1.9  Score=32.67  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=29.7

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|.|+ |.-|..++.+|.++ |++|.++.+...
T Consensus        26 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~   60 (351)
T 3ruf_A           26 KTWLITGVAGFIGSNLLEKLLKL-NQVVIGLDNFST   60 (351)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            46899995 99999999999996 999999998643

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=82.65  E-value=1.2  Score=36.09  Aligned_cols=34  Identities=15%  Similarity=0.298  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhC-CCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G~   63 (146)
                      ..+.|||.|..|..+|..|+++. |++|.++++..
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            36899999999999999999953 68999998753

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=82.52  E-value=2.1  Score=32.21  Aligned_cols=34  Identities=18%  Similarity=0.365  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC---cEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW---RVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~---~VlvLE~G~~   64 (146)
                      ..+.|||+|..|...|..|.++ |+   +|.+.++...
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~-g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIAN-GYDPNRICVTNRSLD   40 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHT-TCCGGGEEEECSSSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHC-CCCCCeEEEEeCCHH
Confidence            4688999999999999999996 78   8999988653

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=82.48  E-value=2  Score=32.50  Aligned_cols=33  Identities=24%  Similarity=0.473  Sum_probs=28.9

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|.|+ |.-|..++.+|.++ |++|.++.+..
T Consensus        21 ~~vlVTGasG~iG~~l~~~L~~~-g~~V~~~~r~~   54 (330)
T 2pzm_A           21 MRILITGGAGCLGSNLIEHWLPQ-GHEILVIDNFA   54 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHGGG-TCEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence            36899987 99999999999997 99999998853

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=82.43  E-value=1.6  Score=34.56  Aligned_cols=34  Identities=15%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ..-.++|+|.|..|..+|..|.+. |.+|++.++-
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~-GakVvv~D~~  205 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTE-GAKLVVTDVN  205 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            345699999999999999999996 9999988753

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=82.31  E-value=1.2  Score=33.59  Aligned_cols=31  Identities=19%  Similarity=0.458  Sum_probs=27.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      -.++|+|+|-.|..+|..|++. | +|.+..|.
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~-G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKD-N-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHC-C-CEEEEECC
Confidence            3699999999999999999996 8 99998775

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=82.14  E-value=1.5  Score=32.69  Aligned_cols=31  Identities=13%  Similarity=0.415  Sum_probs=26.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.+.
T Consensus         4 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   35 (315)
T 2ydy_A            4 RVLVTGATGLLGRAVHKEFQQN-NWHAVGCGFR   35 (315)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEC--
T ss_pred             eEEEECCCcHHHHHHHHHHHhC-CCeEEEEccC
Confidence            4889997 99999999999996 9999999864

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=82.04  E-value=0.45  Score=35.46  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      ..+.|||.|.-|..+|..|.++ |++|..+++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~-G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSV-GHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHT-TCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHC-CCEEEEecCH
Confidence            4689999999999999999996 9999998763

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=82.00  E-value=2.1  Score=32.91  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=29.1

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.+...
T Consensus        30 ~vlVtGatG~IG~~l~~~L~~~-g~~V~~~~r~~~   63 (381)
T 1n7h_A           30 IALITGITGQDGSYLTEFLLGK-GYEVHGLIRRSS   63 (381)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCS
T ss_pred             eEEEEcCCchHHHHHHHHHHHC-CCEEEEEecCCc
Confidence            5899997 99999999999996 999999988643

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=81.93  E-value=2  Score=32.07  Aligned_cols=32  Identities=16%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~   63 (146)
                      .++|||+|-+|..++..|.+. |. +|.|..|-.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~-G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM-GVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence            899999999999999999996 76 899998864

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=81.89  E-value=2.1  Score=33.45  Aligned_cols=35  Identities=20%  Similarity=0.421  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.+.|||+|..|..++..+.+. |.+|++++..++
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~-G~~vi~~d~~~~   48 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEM-GYKIAVLDPTKN   48 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCC
Confidence            34799999999999999999986 999999997654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=81.88  E-value=2  Score=32.79  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|+|+|..|..++..+++..+.+|+.++..+.
T Consensus       165 ~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~  199 (348)
T 4eez_A          165 DWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQD  199 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred             CEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHH
Confidence            36899999999999888887766889999987643

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=81.73  E-value=2.2  Score=32.07  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=29.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.+...
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~   48 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAA-GHDLVLIHRPSS   48 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEECTTS
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCEEEEEecChH
Confidence            5899995 99999999999996 999999998654

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=81.67  E-value=1.5  Score=38.10  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      --.+-|||+|..|.-.|..++.+ |+.|+++|..+
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~a-G~~V~l~D~~~  349 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARV-GISVVAVESDP  349 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhC-CCchhcccchH
Confidence            34788999999999999999996 99999998764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=81.61  E-value=2.4  Score=32.48  Aligned_cols=35  Identities=31%  Similarity=0.578  Sum_probs=30.3

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|.| +|.-|..++.+|.+++|++|.++.+...
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   60 (372)
T 3slg_A           25 KKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTD   60 (372)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChh
Confidence            4699999 5999999999999865899999998754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=81.49  E-value=2  Score=32.19  Aligned_cols=32  Identities=16%  Similarity=0.240  Sum_probs=28.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      -.++|.|+ |.-|..++.+|.++ |++|.++.+.
T Consensus        12 ~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~   44 (342)
T 1y1p_A           12 SLVLVTGANGFVASHVVEQLLEH-GYKVRGTARS   44 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            35899997 99999999999996 9999998774

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=81.49  E-value=2.2  Score=31.56  Aligned_cols=32  Identities=25%  Similarity=0.538  Sum_probs=27.9

Q ss_pred             EEEECC-CHHHHHHHHHHHHhCC-CcEEEEecCCC
Q psy3408          32 FIIVGG-GSAGAVLANRLSEELD-WRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~-G~aG~~~A~~L~~~~g-~~VlvLE~G~~   64 (146)
                      ++|.|+ |.-|..++.+|.++ | ++|.++.+...
T Consensus         2 vlVtGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~   35 (310)
T 1eq2_A            2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKD   35 (310)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCCCEEEEECCSS
T ss_pred             EEEEcCccHHHHHHHHHHHHC-CCcEEEEEccCCC
Confidence            688997 99999999999996 8 99999987643

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=81.47  E-value=2.3  Score=33.26  Aligned_cols=35  Identities=23%  Similarity=0.522  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...+.|||+|.-|..++..+.+. |.+|++++..++
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~l-G~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKM-GYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCC
Confidence            44799999999999999999986 999999998654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=81.46  E-value=2.6  Score=30.09  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=28.8

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHhCCC--cEEEEecCCC
Q psy3408          31 DFIIVG-GGSAGAVLANRLSEELDW--RVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG-~G~aG~~~A~~L~~~~g~--~VlvLE~G~~   64 (146)
                      .++|.| +|.-|..++.+|.++ |+  +|.++.+...
T Consensus        20 ~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~r~~~   55 (242)
T 2bka_A           20 SVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKL   55 (242)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCC
T ss_pred             eEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEEcCCC
Confidence            589999 589999999999997 88  9999988654

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=81.37  E-value=1.1  Score=35.93  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=25.8

Q ss_pred             CCcccEEEECCCHHHH-HHHHHHHHhCCCcE-EEEecC
Q psy3408          27 SGKFDFIIVGGGSAGA-VLANRLSEELDWRV-LLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~-~~A~~L~~~~g~~V-lvLE~G   62 (146)
                      +....+.|||.|..|. ..+..|.+.++.++ .|.++.
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~  118 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN  118 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCC
Confidence            4467899999999996 77777776545554 466654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=81.28  E-value=1.6  Score=32.45  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=27.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|...|..|.+  |++|.+.++.+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~--g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR--RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT--TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC--CCeEEEEeCCH
Confidence            47899999999999999987  78999998764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=81.27  E-value=1.6  Score=31.97  Aligned_cols=32  Identities=13%  Similarity=0.246  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||.|..|...|..|.+. |+.|.+.++..
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~-g~~v~~~~~~~   36 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQT-PHELIISGSSL   36 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTS-SCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEECCCH
Confidence            688999999999999999986 88999998753

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=81.22  E-value=2.3  Score=32.41  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=29.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|.|+ |.-|..++.+|.++ |++|.++.|..
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~   44 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDA-HRPTYILARPG   44 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHC-CCCEEEEECCC
Confidence            46999998 99999999999996 89999998865

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=81.15  E-value=1.2  Score=33.23  Aligned_cols=29  Identities=17%  Similarity=0.281  Sum_probs=26.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEe
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIE   60 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE   60 (146)
                      .+.|||.|..|...|..|.+. |++|.+.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~   33 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARA-GHQLHVTT   33 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHT-TCEEEECC
T ss_pred             EEEEEccCHHHHHHHHHHHhC-CCEEEEEc
Confidence            588999999999999999996 99999987

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=81.11  E-value=1.6  Score=35.36  Aligned_cols=33  Identities=15%  Similarity=0.252  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+.|||.|..|..+|..|++  |++|+++++.+.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~--G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ--NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc--CCeEEEEecCHH
Confidence            368899999999999999986  899999988643

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=81.02  E-value=2.4  Score=31.68  Aligned_cols=34  Identities=9%  Similarity=0.189  Sum_probs=24.8

Q ss_pred             cEEEECCCHHH-HHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAG-AVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG-~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|..+ .-+|..+.+ .+.+|++++++...
T Consensus       148 ~~~VIggG~~~~~e~a~~~~~-~~~~v~i~~~~~~~  182 (304)
T 4fk1_A          148 PLIIISENEDHTLHMTKLVYN-WSTDLVIATNGNEL  182 (304)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT-TCSCEEEECSSCCC
T ss_pred             ceeeecCCCchhhhHHHHHHh-CCceEEEEeccccc
Confidence            67888888654 556666666 48999999988654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=81.00  E-value=2  Score=32.91  Aligned_cols=32  Identities=19%  Similarity=0.179  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..|++. ++  .+.++|.-.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~-~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEECCh
Confidence            478999999999999999996 77  899988754

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=80.79  E-value=2.4  Score=32.24  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.+..
T Consensus        29 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~   61 (352)
T 1sb8_A           29 VWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFA   61 (352)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred             eEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            5899998 99999999999997 99999998854

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=80.74  E-value=2.2  Score=31.85  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=28.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhC-CCcEEEEecC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G   62 (146)
                      ..+.|||.|..|...|..|.++. +.+|.+.++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            46899999999999999999852 5789988764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=80.68  E-value=1.9  Score=32.00  Aligned_cols=32  Identities=16%  Similarity=0.302  Sum_probs=28.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|+|+ |.-|..++.+|.++ |++|.++.|..
T Consensus         6 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~   38 (308)
T 1qyc_A            6 RILLIGATGYIGRHVAKASLDL-GHPTFLLVRES   38 (308)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCC
T ss_pred             EEEEEcCCcHHHHHHHHHHHhC-CCCEEEEECCc
Confidence            5899997 99999999999996 89999998864

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=80.65  E-value=3.3  Score=33.06  Aligned_cols=37  Identities=16%  Similarity=0.113  Sum_probs=32.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +...++|+|+|.-+..+|.-++.. |++|.|+|..+..
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~l-g~~V~v~D~R~~~  239 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFL-GYRVTVCDARPVF  239 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHT-TCEEEEEESCTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCchhh
Confidence            567999999999999999988885 9999999987654

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=80.63  E-value=2.1  Score=32.10  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.|..
T Consensus         6 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   38 (321)
T 3c1o_A            6 KIIIYGGTGYIGKFMVRASLSF-SHPTFIYARPL   38 (321)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             EEEEEcCCchhHHHHHHHHHhC-CCcEEEEECCc
Confidence            4899996 99999999999996 89999998875

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=80.57  E-value=2.5  Score=32.82  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      ...+.|||+|..|..+|..|+.. ++ .+.++|.-..
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~-~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLK-ELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCch
Confidence            44789999999999999999996 77 8999988653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=80.55  E-value=2.3  Score=33.41  Aligned_cols=37  Identities=14%  Similarity=0.287  Sum_probs=30.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ....++|||+|-.|+.+|..|+..+=.++.|++....
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            3568999999999999999999973347788888753

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=80.48  E-value=2.7  Score=32.58  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      ...+.|||+|..|..+|..|+.. +. .+.++|.-..
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~-~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIK-QLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCceEEEEeCChH
Confidence            34689999999999999999985 66 8999987653

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=80.36  E-value=2.1  Score=31.75  Aligned_cols=32  Identities=13%  Similarity=0.153  Sum_probs=28.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|.|+ |.-|..++.+|.++ |++|.++.|..
T Consensus         4 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   36 (307)
T 2gas_A            4 KILILGPTGAIGRHIVWASIKA-GNPTYALVRKT   36 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCS
T ss_pred             EEEEECCCchHHHHHHHHHHhC-CCcEEEEECCC
Confidence            4899997 99999999999997 89999998864

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=80.36  E-value=2.7  Score=31.60  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=28.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|.|+ |.-|..++.+|.+++|++|.++.+..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   35 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3789997 99999999999985479999998864

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=80.34  E-value=2.3  Score=32.21  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=29.0

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -.++|.|+ |.-|..++.+|.++ |++|.++.+..
T Consensus        28 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~   61 (343)
T 2b69_A           28 KRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFF   61 (343)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred             CEEEEEcCccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            46899997 99999999999996 99999998753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=80.27  E-value=2.2  Score=33.23  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=27.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAG   62 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G   62 (146)
                      ..+.|||+|..|..+|..|++. +.  .+.++|.-
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~-~~~~~l~l~D~~   39 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQ-GITDELVVIDVN   39 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCceEEEEecc
Confidence            4689999999999999999986 65  78998864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=80.17  E-value=2  Score=35.42  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-.++|||.|..|..+|..+... |.+|++.|+.+
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            44799999999999999999886 89999999754

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=80.12  E-value=2.6  Score=30.23  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=27.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -++|.|+ |.-|..+|.+|+++ |.+|+++.+..
T Consensus         9 ~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~   41 (244)
T 1cyd_A            9 RALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTN   41 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4788887 78899999999996 99999998753

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=80.06  E-value=2.4  Score=32.81  Aligned_cols=33  Identities=12%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G   62 (146)
                      .-.++|+|+|-+|..+|..|++. |. +|.|+.|-
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~-Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALD-GVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHC-CCCEEEEEECC
Confidence            34799999999999999999996 76 89998886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	4e-28
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	5e-27
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	5e-23
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	2e-20
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	3e-16
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	1e-15
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	1e-14
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	4e-07
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	7e-07
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	1e-06
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-06
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	1e-06
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-06
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	2e-06
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	5e-06
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	7e-06
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	7e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-05
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	2e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	2e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	4e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	4e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	6e-05
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	6e-05
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	7e-05
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	7e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-04
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	4e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.001
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	0.002
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.002
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	0.003
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.003
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	0.004
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	0.004

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  104 bits (260), Expect = 4e-28
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 26  ISGK-FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL---PGYWFNLLKS 81
           ++GK +D+II GGG  G  +A +L+E    +VL+IE G        +   P  +  +  +
Sbjct: 20  VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGT 79

Query: 82  RQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPA 117
             D  Y T P       + NR N+   GKGLGG   
Sbjct: 80  TVDQNYLTVP------LINNRTNNIKAGKGLGGSTL 109

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  101 bits (252), Expect = 5e-27
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 24  DNISGK-FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL---PGYWFNLL 79
            ++SG+  D+II GGG  G   A RL+E  +  VL+IE+G    +   +      + ++ 
Sbjct: 11  KDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIF 70

Query: 80  KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPAT 118
            S  D AY T           N+      G GLGG    
Sbjct: 71  GSSVDHAYETVE-----LATNNQTALIRSGNGLGGSTLV 104

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 90.3 bits (223), Expect = 5e-23
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 13  STVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELP 72
           S +       +  + G +D++IVGGG++G  LA  LSE   ++VL++E G  P     + 
Sbjct: 10  SYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVL 67

Query: 73  GYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGK 110
                +   +Q+   +T  +      +        RG+
Sbjct: 68  TADGFVYNLQQEDDGKTPVER----FVSEDGIDNVRGR 101

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 83.5 bits (205), Expect = 2e-20
 Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 1/97 (1%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
           K+D +IVG G  G   A  L     ++V + + G               +   +    + 
Sbjct: 4   KYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV 62

Query: 89  TQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNH 125
                ++                   + A+     N 
Sbjct: 63  NVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNG 99

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 71.6 bits (174), Expect = 3e-16
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 30  FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELP-----GYWFNLLKSRQD 84
           +D+IIVG G  G + A+RLSE    +VLL+E GG   + +             L K    
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 61

Query: 85  WAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPA 117
             + +   +        +      G  +GG  +
Sbjct: 62  GLFESLFTDSN-PFWWCKDITVFAGCLVGGGTS 93

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 70.3 bits (171), Expect = 1e-15
 Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 20/105 (19%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELP---------------- 72
           +   +++G G  GAV A RL++       ++E G                          
Sbjct: 7   RVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 65

Query: 73  ---GYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
                                    +            +G+G+GG
Sbjct: 66  ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGG 110

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 67.3 bits (163), Expect = 1e-14
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 21/108 (19%)

Query: 28  GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD----PPEASELPGYWFNLLKSRQ 83
           G    +++G G   AV A RL E    + L++E G       P+ +   G      +S  
Sbjct: 1   GYVPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSW 59

Query: 84  DWAYRTQPDNRMFF----------------GLENRVNHWPRGKGLGGF 115
                  P     +                 +         G+G+GG 
Sbjct: 60  FKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGG 107

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 4e-07
 Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS---ELPGYWFNLLKS 81
          ++  ++D I++G G    +L+  +S     +VL ++        S         +   + 
Sbjct: 2  HMDEEYDVIVLGTGLTECILSGIMS-VNGKKVLHMDRNPYYGGESSSITPLEELYKRFQL 60

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 44.6 bits (104), Expect = 7e-07
 Identities = 13/84 (15%), Positives = 23/84 (27%)

Query: 27  SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWA 86
           S  +D +++G GS G       +     RV +I+                 +        
Sbjct: 1   SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK 60

Query: 87  YRTQPDNRMFFGLENRVNHWPRGK 110
                 N M    E+    W   +
Sbjct: 61  LMVTGANYMDTIRESAGFGWELDR 84

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 27  SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWA 86
           S KFD I++G G  G V A + + +L  +  LIE      E     G     +      A
Sbjct: 1   SQKFDVIVIGAGPGGYVAAIKSA-QLGLKTALIEK-YKGKEGKTALGGTCLNVGCIPSKA 58

Query: 87  YRTQPDNRMFFGLENRVNHWPRGK 110
                          +++    G+
Sbjct: 59  LLDSSYKFHEAHESFKLHGISTGE 82

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 26  ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW 85
           I+   D +I+GGG AG V A + + +L +    +E  G         G   +        
Sbjct: 2   INKSHDVVIIGGGPAGYVAAIKAA-QLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSH 60

Query: 86  AYRTQPDNRMFFGLENRVNHW 106
            +          G++   +  
Sbjct: 61  LFHQMHTEAQKRGIDVNGDIK 81

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
            +D++++GGGS G   A R + EL  R  ++E+         +      ++ +    +  
Sbjct: 3   SYDYLVIGGGSGGLASARRAA-ELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEF 61

Query: 89  TQPDNRMFFGLENRVNHWPRGK 110
                   F       +W   K
Sbjct: 62  MHDHADYGFPSCEGKFNWRVIK 83

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
            +D I++GGG +G + A   + E    VLL++ G        + G     + +R      
Sbjct: 2   HYDVIVIGGGPSGLMAAIGAA-EEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEI 60

Query: 89  TQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNH 125
            +        L +  + +     +  F   G+     
Sbjct: 61  VKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEE 97

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
          +D+IIVG G  GAV AN L  +L+ +VL+IE 
Sbjct: 2  YDYIIVGSGLFGAVCANELK-KLNKKVLVIEK 32

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.5 bits (99), Expect = 5e-06
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 12 ISTVFTVVSTAEDNI---------SGKFDFIIVGGGSAGAVLANRLS-----EELDWRVL 57
          I+T +T+    +D           + + D +IVG G AG   A RL       E D RV 
Sbjct: 6  ITTHYTIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVC 65

Query: 58 LIEAGGDP 65
          L+E     
Sbjct: 66 LVEKAAHI 73

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (97), Expect = 7e-06
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 30  FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASE--LPGYWFNLLKSRQDWAY 87
           FD II+GGGS G   A   + + D +V++++     P  +   L G   N+    +   +
Sbjct: 4   FDLIIIGGGSGGLAAAKEAA-KFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMH 62

Query: 88  RTQPDNRMFFGLENRVNHWPR 108
           +     +      N       
Sbjct: 63  QAALLGQALKDSRNYGWKLED 83

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 42.0 bits (97), Expect = 7e-06
 Identities = 12/69 (17%), Positives = 19/69 (27%)

Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWA 86
          S  FD +++G GS G   A   +     RV +I+                 +        
Sbjct: 1  SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKK 60

Query: 87 YRTQPDNRM 95
                  M
Sbjct: 61 LMVTGAQYM 69

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS---ELPGYWFNLLKSRQDW 85
            +D I++G G    +L+  LS +   +VL I+        +    L   +      +Q+ 
Sbjct: 5   DYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEAASVTLSQLYEKF---KQNP 60

Query: 86  AYRTQPDNRMFFGLENRVNHWPR 108
             + + +++     +  V+  P+
Sbjct: 61  ISKEERESKFGKDRDWNVDLIPK 83

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
          + D ++VG GSAG   A  +S+  + +V +IE    P
Sbjct: 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 69

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 27  SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWA 86
           S + D +I+GGG  G V A + + +L ++   IE  G         G   +         
Sbjct: 1   SDENDVVIIGGGPGGYVAAIKAA-QLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM 59

Query: 87  YRTQPDNRMFFGLE 100
           Y     +    G++
Sbjct: 60  YHEAKHSFANHGVK 73

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 40.5 bits (93), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
          S  FD I+VG GS G     +L+++   + LL++A   P    
Sbjct: 1  STHFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPPHTNG 42

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
          +D I++GGGS G   A R +   + +V L+E  
Sbjct: 2  YDLIVIGGGSGGMAAARRAA-RHNAKVALVEKS 33

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
           ++ +++GGG  G+ +A  L++E +    L E+G      +
Sbjct: 4  HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTMGGRTT 43

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 4e-05
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
           +D+I +GGGS G    NR +     +  LIEA 
Sbjct: 2  HYDYIAIGGGSGGIASINRAA-MYGQKCALIEAK 34

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.5 bits (91), Expect = 4e-05
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWA 86
          S   + II+G G+AG   A +L+ +L   V + + G        + G  F    + +   
Sbjct: 2  SQYSENIIIGAGAAGLFCAAQLA-KLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTP 60

Query: 87 YRTQPDN 93
                N
Sbjct: 61 AHYLSQN 67

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.8 bits (89), Expect = 6e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
          +   +I+GGG  G V A R   +L    +L+E  
Sbjct: 5  QTTLLIIGGGPGGYVAAIRAG-QLGIPTVLVEGQ 37

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 39.2 bits (90), Expect = 6e-05
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 30  FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRT 89
            D +I+G G AG   A    +    +V+L+E    P   ++L     N  +++       
Sbjct: 24  TDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGI 82

Query: 90  QPDNRMFFGLENRVNHW 106
           +   ++      +    
Sbjct: 83  EDKKQIMIDDTMKGGRN 99

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.3 bits (90), Expect = 7e-05
 Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 1/87 (1%)

Query: 30  FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRT 89
            D +I G G  G   A  L +    +V L+E+  +              +++  +     
Sbjct: 2   IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGP 61

Query: 90  QPDNRMFFGLENRVNHWPRGKGLGGFP 116
                              G  +   P
Sbjct: 62  ALAATAIP-THELRYIDQSGATVWSEP 87

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 18 VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64
          V+   ++N   ++D I +GGG+AG   +  L   +  R L+++    
Sbjct: 31 VIYNVDENDPREYDAIFIGGGAAGRFGSAYLR-AMGGRQLIVDRWPF 76

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
           + + ++VG G  G V A R + +L  +V ++E G        +       L S      +
Sbjct: 3   ETETLVVGAGPGGYVAAIRAA-QLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQ 61

Query: 89  TQPDNRMFFGLENRVNHWPR 108
            +    M    EN    + +
Sbjct: 62  AKHSEEMGIKAENVTIDFAK 81

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 29  KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
               ++VG GSAG   +    +     V+L++        S +     N + ++Q  A+ 
Sbjct: 19  TTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHG 77

Query: 89  TQPDNRMFFGLENRVNHW 106
            +     F     +    
Sbjct: 78  VEDKVEWFIEDAMKGGRQ 95

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
          +D +++GGG  G   A   + +   +V ++E   
Sbjct: 7  YDVVVLGGGPGGYSAAFAAA-DEGLKVAIVERYK 39

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 30  FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRT 89
            D ++VG G AG   A   + +   +V+LIE        ++L     N   + Q  A + 
Sbjct: 17  VDVVVVGSGGAGFSAAISAT-DSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKI 75

Query: 90  QPDNRMFFGLENRVNHW 106
                + F    +    
Sbjct: 76  TDSPELMFEDTMKGGQN 92

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
           +IVG G +GAV+  +L+ E   +V +I+  
Sbjct: 5  ILIVGAGFSGAVIGRQLA-EKGHQVHIIDQR 34

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 31 DFIIVGGGSAGAVLANRLSEEL----DWRVLLIEAGGDPPEAS 69
          D +IVG G AG + A  LSE +    D +V +I+         
Sbjct: 9  DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG 51

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASE 70
          K    I+G G +G +L   L  +     +++E          
Sbjct: 2  KTQVAIIGAGPSGLLLGQLLH-KAGIDNVILERQTPDYVLGR 42

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
            +I+G G  G  LA+ L       + +++ G
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
           D +I+G G+AG  LA RL+++   +V+++  G
Sbjct: 8  CDVLIIGSGAAGLSLALRLADQH--QVIVLSKG 38

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.003
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP 66
           F+++GGG+A    A  +       RVL++    + P
Sbjct: 6  PFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP 42

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 34.0 bits (76), Expect = 0.004
 Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
           D +++GGG AG   A    ++     +++   
Sbjct: 6  CDSLVIGGGLAGLRAAVATQQK-GLSTIVLSLI 37

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 33.8 bits (75), Expect = 0.004
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
            I+VG G +G   A RLSE     +L++EA    
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.91
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.91
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.85
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.84
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.77
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.7
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.56
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.25
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.23
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.96
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.92
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.91
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.9
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.89
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.88
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.85
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.83
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.83
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.79
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.79
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.79
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.77
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.75
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.75
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.75
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.74
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.73
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.68
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.68
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.68
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.68
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.67
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.65
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.64
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.58
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.58
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.57
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.57
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.57
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.55
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.55
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.51
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.5
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.49
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.48
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.48
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.47
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.43
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.42
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.42
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.42
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.41
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.35
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.35
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.32
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.32
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.28
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.27
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.2
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.1
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.1
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.85
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.7
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.69
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.68
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.59
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.54
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.54
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.52
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.49
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.45
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.44
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.4
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.39
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.34
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.23
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.22
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.22
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.2
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.16
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.99
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.99
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.99
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.95
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.94
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.86
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.8
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.57
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.56
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.54
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.54
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.52
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.32
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.3
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	95.87
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.87
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.18
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.52
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.45
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.37
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	94.31
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.18
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.13
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.09
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.97
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.75
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.56
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.77
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.36
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	91.91
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	91.85
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.83
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.33
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	91.22
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	91.0
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.82
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.62
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	90.16
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.82
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	89.64
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	89.51
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.24
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	89.12
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.02
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	88.98
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.77
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.54
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	88.38
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.18
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.12
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	88.05
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	87.47
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	87.32
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	86.32
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	86.28
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	86.12
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	86.09
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	85.71
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	85.28
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	85.25
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.08
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	85.05
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	84.92
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.77
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	84.48
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	84.43
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	84.43
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	84.26
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.03
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	83.95
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	83.84
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	83.54
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	83.46
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.29
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.12
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	83.06
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	82.96
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	82.91
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	82.59
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	82.56
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	82.12
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	81.82
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	81.75
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	80.66
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	80.1
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.03

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.91  E-value=6.9e-25  Score=174.53  Aligned_cols=117  Identities=26%  Similarity=0.332  Sum_probs=94.0

Q ss_pred             hccccccccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC---CccCcchhhhcccCccccccccCCCcc
Q psy3408          18 VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE---ASELPGYWFNLLKSRQDWAYRTQPDNR   94 (146)
Q Consensus        18 ~~~~~~~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~---~~~~p~~~~~~~~~~~~w~~~~~p~~~   94 (146)
                      +.+.+.+...+.|||||||+|++|+++|.+|+++++++|||||+|+....   ....|..+..+..++.+|.|.+.++  
T Consensus         6 ~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~--   83 (385)
T d1cf3a1           6 LLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL--   83 (385)
T ss_dssp             SBCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCC--
T ss_pred             hhCCcccccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCc--
Confidence            44455566778899999999999999999999976789999999976432   2344555555567788999988765  


Q ss_pred             ccccCCCCeeeeccccEEeccccc-cceecCCChhhhhhhhHHHHhhcc
Q psy3408          95 MFFGLENRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIELNLIIACSLD  142 (146)
Q Consensus        95 ~~~~~~~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~~~~~~~~~~  142 (146)
                         ...++.+.+++|++|||||.| +|+|+|+++.||+.   |+++.++
T Consensus        84 ---~~~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~---w~~~~~~  126 (385)
T d1cf3a1          84 ---ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDS---WETVFGN  126 (385)
T ss_dssp             ---TTTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHH---HHHTTCC
T ss_pred             ---CCCCceeeecccccccccceeeeeeeeccChhhhcc---cccccCC
Confidence               367788999999999999999 99999999999965   5555443

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.91  E-value=1.4e-24  Score=173.38  Aligned_cols=106  Identities=30%  Similarity=0.408  Sum_probs=88.8

Q ss_pred             cccccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC---CccCcchhhhcccCccccccccCCCcccccc
Q psy3408          22 AEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE---ASELPGYWFNLLKSRQDWAYRTQPDNRMFFG   98 (146)
Q Consensus        22 ~~~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~---~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~   98 (146)
                      +.....++|||||||+|++|+++|.||+++++++|||||+|+....   ...+|..+.....+..+|.|.++|+.     
T Consensus        17 p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~-----   91 (391)
T d1gpea1          17 PSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPLI-----   91 (391)
T ss_dssp             GGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCCT-----
T ss_pred             cccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeecC-----
Confidence            3344556899999999999999999999975589999999976432   23567666666777899999998864     


Q ss_pred             CCCCeeeeccccEEeccccc-cceecCCChhhhhhh
Q psy3408          99 LENRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIEL  133 (146)
Q Consensus        99 ~~~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~  133 (146)
                       +++.+.+++|++|||+|.+ +|+|+|+++.||+.|
T Consensus        92 -~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w  126 (391)
T d1gpea1          92 -NNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSW  126 (391)
T ss_dssp             -TSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHH
T ss_pred             -CCcEeeeceeeccCcccceeeeEEeeccccccccc
Confidence             5678899999999999999 999999999999665

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.85  E-value=4.6e-22  Score=156.90  Aligned_cols=104  Identities=25%  Similarity=0.193  Sum_probs=78.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC----CccCcchhhh-cc---cCccccccccCCCccccccCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE----ASELPGYWFN-LL---KSRQDWAYRTQPDNRMFFGLE  100 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~----~~~~p~~~~~-~~---~~~~~w~~~~~p~~~~~~~~~  100 (146)
                      .|||||||+|++|+++|.||+++ +++|+|||+|+....    ....|..... ..   .+...|.+.+.+++    ...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~-g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   76 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP----FWW   76 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCC----TTB
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC-CCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCc----ccC
Confidence            69999999999999999999996 999999999975421    1111211111 11   12234566677776    556


Q ss_pred             CCeeeeccccEEeccccc-cceecCCChhhhhhhhHHH
Q psy3408         101 NRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIELNLII  137 (146)
Q Consensus       101 ~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~~~~~  137 (146)
                      ++.+.+++|++|||||.| +|+|+|+.+.||+.|..|.
T Consensus        77 ~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp  114 (360)
T d1kdga1          77 CKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP  114 (360)
T ss_dssp             CTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCC
T ss_pred             Cccccccceeeecchhccccccccccchhhheeccccc
Confidence            778899999999999999 9999999999999876663

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.84  E-value=3.1e-22  Score=157.65  Aligned_cols=102  Identities=25%  Similarity=0.337  Sum_probs=75.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcchhhhcccCccccccccCCCccccccCCCCeeee
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHW  106 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~  106 (146)
                      ...|||||||+|++|+++|.+|++  ++||||||+|+.+.....++............|.+.+.+++    ...++.+.+
T Consensus        24 ~~~YD~IIVGsG~aG~vlA~rLae--~~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   97 (351)
T d1ju2a1          24 EGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVER----FVSEDGIDN   97 (351)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEE----EECTTSCEE
T ss_pred             cCCccEEEECccHHHHHHHHHhcC--CCCEEEEecCCCCcCccccccchhhhccCcCCCCCCCcccc----ccCCCceee
Confidence            347999999999999999999998  38999999997643221211111111122344555555555    456678999


Q ss_pred             ccccEEeccccc-cceecCCChhhhhhhh
Q psy3408         107 PRGKGLGGFPAT-GLIYSNHVKTGRIELN  134 (146)
Q Consensus       107 ~rG~~lGGsS~i-~~~~~R~~~~df~~~~  134 (146)
                      ++|++|||||.| +|+|+|+++.||+.|.
T Consensus        98 ~rG~~lGGsS~in~~~~~R~~~~dfd~~~  126 (351)
T d1ju2a1          98 VRGRVLGGTSIINAGVYARANTSIYSASG  126 (351)
T ss_dssp             EEECBTTGGGGTSCCEECBCCTTSSTTSS
T ss_pred             eeeeecccccccceeeeccCCHHHHhhcc
Confidence            999999999999 9999999999998753

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.77  E-value=2.8e-19  Score=139.96  Aligned_cols=107  Identities=16%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcchhhhcc-------------------cCcccccc
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLL-------------------KSRQDWAY   87 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~~~~~~~-------------------~~~~~w~~   87 (146)
                      .+++|+||||+|++|+++|.+|+++ |++|+|||+|.........+..+....                   .....|.+
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINK   83 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCc
Confidence            4689999999999999999999996 999999999965421111111000000                   01122333


Q ss_pred             ccCCCccccccCCCCeeeeccccEEeccccc-cceecCCChhhhhhhh
Q psy3408          88 RTQPDNRMFFGLENRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIELN  134 (146)
Q Consensus        88 ~~~p~~~~~~~~~~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~~  134 (146)
                      ...+..........+.+.++++++|||+|.+ ++++.|+.+.||++|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~  131 (370)
T d3coxa1          84 SIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL  131 (370)
T ss_dssp             BCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC
T ss_pred             ccccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhccc
Confidence            3333322222334566788899999999999 9999999999998764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.70  E-value=4.9e-18  Score=132.50  Aligned_cols=106  Identities=20%  Similarity=0.178  Sum_probs=68.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccC-cchhhhc-ccCccccccc--cCC-------------
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL-PGYWFNL-LKSRQDWAYR--TQP-------------   91 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~-p~~~~~~-~~~~~~w~~~--~~p-------------   91 (146)
                      ..||||||+|++|+++|.+|+++ |++|+|||+|......... +.+.... ......|...  ..|             
T Consensus         2 ~v~VIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (367)
T d1n4wa1           2 YVPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN   80 (367)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred             cCeEEEeCcCHHHHHHHHHHHHC-cCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCcc
Confidence            36999999999999999999996 9999999999764321111 1100000 0111112111  111             


Q ss_pred             ---CccccccCCCCeeeeccccEEeccccc-cceecCCChhhhhhhhH
Q psy3408          92 ---DNRMFFGLENRVNHWPRGKGLGGFPAT-GLIYSNHVKTGRIELNL  135 (146)
Q Consensus        92 ---~~~~~~~~~~~~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~~~  135 (146)
                         ..........+.+.+++|++|||+|.+ +++++|+.+.||+.|..
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~  128 (367)
T d1n4wa1          81 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP  128 (367)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT
T ss_pred             cccccCccccccCCccceeeEEecCCCCceecceeeccChhHhhcccc
Confidence               000001123345678899999999999 99999999999987654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.56  E-value=7.3e-16  Score=119.01  Aligned_cols=39  Identities=28%  Similarity=0.546  Sum_probs=35.9

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++.+|||||||+|++|+++|.+|+++ |+||+|||+|+..
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~-G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhC-CCeEEEEecCCCC
Confidence            35789999999999999999999996 9999999999764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=4.6e-12  Score=90.19  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=36.7

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ++.+||+||||+|++|+++|++|+++ |++|+|||+.+..+
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~-G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCCCC
Confidence            45689999999999999999999997 99999999988764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.96  E-value=3.3e-10  Score=82.81  Aligned_cols=37  Identities=35%  Similarity=0.618  Sum_probs=34.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++||+||||+|++|+.+|..|+++ |++|+|||+++..
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~-G~~V~liEk~~~~   37 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKL   37 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            489999999999999999999996 9999999998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.92  E-value=4.4e-10  Score=83.01  Aligned_cols=39  Identities=28%  Similarity=0.350  Sum_probs=35.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .+++|+||||+|++|+.+|.+|+++ |++|+|||+++..+
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~-G~~V~vlEk~~~~G   40 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKIG   40 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence            4679999999999999999999997 99999999997653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.91  E-value=9.3e-10  Score=78.83  Aligned_cols=37  Identities=32%  Similarity=0.470  Sum_probs=34.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++||+||||+|++|+.+|..+++. |++|+|||+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~-G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccCC
Confidence            689999999999999999999997 9999999997544

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.90  E-value=5e-10  Score=88.07  Aligned_cols=39  Identities=41%  Similarity=0.566  Sum_probs=34.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-----hCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE-----ELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~-----~~g~~VlvLE~G~~~~   66 (146)
                      ++|||||||+|+||+++|+.|++     ..|.+|+||||+..++
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG   74 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   74 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence            36999999999999999999997     2499999999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.89  E-value=7e-10  Score=81.99  Aligned_cols=37  Identities=27%  Similarity=0.554  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..+||+||||+|.+|+++|++|+++ |++|+|||++..
T Consensus         2 ~~~~DvvIIGaGi~Gls~A~~La~~-G~~V~vlE~~~~   38 (276)
T d1ryia1           2 KRHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTM   38 (276)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSST
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence            4579999999999999999999997 999999999753

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.88  E-value=7.8e-10  Score=82.14  Aligned_cols=37  Identities=35%  Similarity=0.619  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .|||+||||+|.+|+++|++|+++ |++|+|||+....
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~-G~~V~viE~~~~~   38 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPP   38 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            589999999999999999999996 9999999997543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.85  E-value=1.1e-09  Score=82.52  Aligned_cols=38  Identities=29%  Similarity=0.390  Sum_probs=35.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||||||+|++|+++|.+|+++ |.+|+||||++..
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~-G~~V~lvEK~~~~   51 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVI   51 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            4589999999999999999999996 9999999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.5e-09  Score=79.54  Aligned_cols=40  Identities=28%  Similarity=0.308  Sum_probs=36.0

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ..++.+|||||+|.+|+++|++|+++ |++|+|||+.+..+
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~-G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVG   41 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSB
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCc
Confidence            34577899999999999999999997 99999999988764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=1.4e-09  Score=78.49  Aligned_cols=39  Identities=31%  Similarity=0.518  Sum_probs=35.3

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++++||++|||+|++|+.+|..+++. |++|+|||+.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~-G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCc
Confidence            35689999999999999999999996 9999999987654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=2.2e-09  Score=77.10  Aligned_cols=35  Identities=37%  Similarity=0.581  Sum_probs=32.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+||+||||+|++|+.+|.++++. |++|+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~-G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeccC
Confidence            479999999999999999999996 99999999974

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.79  E-value=3.2e-09  Score=76.12  Aligned_cols=37  Identities=30%  Similarity=0.500  Sum_probs=34.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ++||+||||+|++|+.+|..+++. |++|+|||++...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~-G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCC
Confidence            579999999999999999999997 9999999997654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.79  E-value=2.2e-09  Score=75.92  Aligned_cols=36  Identities=36%  Similarity=0.481  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~~   66 (146)
                      +||+|||||++|+++|++|+++ |. +|+|||+.+..+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~-G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHhC-CCCcEEEEECCCCCC
Confidence            4899999999999999999997 84 799999987653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=2.6e-09  Score=81.06  Aligned_cols=36  Identities=44%  Similarity=0.638  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ||+||||||++|+++|++|+++ |++|+|+|+.+..+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~-g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhC-CCcEEEEECCCCcc
Confidence            7999999999999999999997 99999999988765

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.4e-09  Score=79.21  Aligned_cols=35  Identities=31%  Similarity=0.543  Sum_probs=32.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      |+||||+|++|+++|++|+++ |++|+|||+.+..+
T Consensus         1 DViVIGaG~aGL~aA~~L~~~-G~~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT-TCCEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCc
Confidence            899999999999999999997 99999999987653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.75  E-value=3.1e-09  Score=77.27  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=32.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ||+|||||++|+++|++|+++ |++|+|||+.+..+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~G   36 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLG   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSSSB
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCC
Confidence            899999999999999999997 99999999987653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.75  E-value=3.8e-09  Score=76.64  Aligned_cols=38  Identities=24%  Similarity=0.472  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +..||+||||+|++|+.+|..+++. |++|+|||+.+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~-G~~V~viE~~~~~   41 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            4579999999999999999999996 9999999997654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=4.8e-09  Score=76.03  Aligned_cols=36  Identities=33%  Similarity=0.584  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .||+||||+|++|+.+|.++++. |++|+|||+++..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~-G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGG-CCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence            69999999999999999999997 9999999987654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=4.6e-09  Score=78.48  Aligned_cols=39  Identities=33%  Similarity=0.503  Sum_probs=34.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .++|++|||+|++|+.+|.+|+++.|++|+|||+.+..+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~G   70 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG   70 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCC
Confidence            478999999999999999999874599999999987653

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.68  E-value=8.6e-09  Score=73.66  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+||+||||+|++|+.+|..+++. |++|+|||++..
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~-G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecCCC
Confidence            379999999999999999999996 999999999864

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.68  E-value=7.7e-09  Score=78.60  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=35.5

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+++||||||+|++|+.+|++++++ |.+|+||||++..
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~-G~~V~vlEK~~~~   54 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFS   54 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSS
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            34589999999999999999999997 9999999998765

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.68  E-value=6.4e-09  Score=78.91  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..|||||||+|++|+.+|.+++++ |.+|+|||+++.
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~-G~~V~liEK~~~   39 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQK-GLSTIVLSLIPV   39 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            368999999999999999999996 999999999764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.68  E-value=6.5e-09  Score=78.93  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=35.3

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+++||||||+|++|+.+|.+|+++ |.+|+|||+++..
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~-G~~V~llEk~~~~   58 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIP   58 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTT-TCCEEEECSSSSS
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            45678999999999999999999996 9999999998764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1e-08  Score=73.49  Aligned_cols=36  Identities=31%  Similarity=0.572  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+||+||||+|++|+.+|..+++. |++|+|||++..
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~-G~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHKL   37 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHC-CCEEEEEeccCC
Confidence            379999999999999999999996 999999999754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.65  E-value=1e-08  Score=74.22  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=32.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .|+|||+|++|+++|++|+++ |++|+|||+.+..+
T Consensus         3 kV~IIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~G   37 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAG   37 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEeCCCCCc
Confidence            489999999999999999996 99999999987754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.64  E-value=1.3e-08  Score=75.38  Aligned_cols=38  Identities=32%  Similarity=0.418  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+|+|||+|++|+++|++|+++ |++|+|||+.+..+
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~-G~~V~vlE~~~~~G   66 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPG   66 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Confidence            345999999999999999999997 99999999987653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.58  E-value=2.2e-08  Score=72.02  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+||+||||+|++|+.+|..+++. |++|+|+|++.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~-G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            3579999999999999999999997 99999999875

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.9e-08  Score=70.01  Aligned_cols=33  Identities=33%  Similarity=0.463  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .||++|||+|++|+.+|..+++. |.+|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~-G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARK-GIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc-CCeEEEEEEe
Confidence            38999999999999999999996 9999999974

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.57  E-value=3.1e-08  Score=71.40  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=32.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.+|||||+|++|+++|++|+++ |++|+||||+..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~-G~~V~vier~~~   40 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLP   40 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            456899999999999999999996 999999999653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.57  E-value=2.7e-08  Score=73.49  Aligned_cols=34  Identities=35%  Similarity=0.676  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      -||+||||+|++|..+|.++++. |+||+|||++.
T Consensus         1 vyDviVIG~G~aG~~aA~~aa~~-G~~V~liE~~~   34 (259)
T d1onfa1           1 VYDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR   34 (259)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            38999999999999999999996 99999999865

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2.3e-08  Score=75.31  Aligned_cols=38  Identities=32%  Similarity=0.562  Sum_probs=33.5

Q ss_pred             cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..++||+||||+|++|+.+|.++++. + +|+|||+++..
T Consensus         4 p~~~~DVvVVG~G~AGl~AA~~a~~~-g-~V~llEK~~~~   41 (305)
T d1chua2           4 PEHSCDVLIIGSGAAGLSLALRLADQ-H-QVIVLSKGPVT   41 (305)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHTTT-S-CEEEECSSCTT
T ss_pred             CcccCCEEEECccHHHHHHHHHhhcC-C-CEEEEECCCCC
Confidence            34689999999999999999999885 6 99999998764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.55  E-value=2.5e-08  Score=75.25  Aligned_cols=39  Identities=36%  Similarity=0.515  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHH----hCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSE----ELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~----~~g~~VlvLE~G~~~   65 (146)
                      ...|||+|||+|++|+++|..|++    +.|++|+|||+.+.+
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            457999999999999999999974    349999999998765

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=1.8e-08  Score=76.95  Aligned_cols=38  Identities=24%  Similarity=0.338  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..+|||||||+|++|+.+|.+++++ |.+|+|||+++..
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~-G~~V~lleK~~~~   42 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQS-GQTCALLSKVFPT   42 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHT-TCCCEEECSSCGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHc-CCeEEEEeCCCCC
Confidence            3589999999999999999999997 9999999997653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.51  E-value=4.7e-08  Score=72.51  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++.||+|||+|++|+++|..|+++ |++|+|||+.+.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~-G~~v~vlE~~~~   36 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQTP   36 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            367999999999999999999997 999999999863

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.50  E-value=7.1e-08  Score=69.24  Aligned_cols=37  Identities=27%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ..||+||||+|++|+.+|.++++...++|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            5799999999999999999999964568999998643

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.49  E-value=6.6e-08  Score=73.62  Aligned_cols=37  Identities=27%  Similarity=0.351  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~   65 (146)
                      ++||||||+|++|+.+|.++++   ..|.+|+|||+++..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            6899999999999999999985   249999999998654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.48  E-value=6.9e-08  Score=73.34  Aligned_cols=39  Identities=33%  Similarity=0.471  Sum_probs=35.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .+.+|++|||+|++|+.+|.+|.++ |.+|+|+|+++..+
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~-G~~v~i~Ek~~~iG   43 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVG   43 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEEcCCCcc
Confidence            3588999999999999999999996 99999999987753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.48  E-value=6.1e-08  Score=72.38  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~   64 (146)
                      .||||||+|.+|+++|++|+++ | ++|+||||+..
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~-G~~~V~liE~~~~   36 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTR-GWNNITVLDQGPL   36 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHc-CCCcEEEEeCCCC
Confidence            5999999999999999999997 7 57999999853

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.47  E-value=7.4e-08  Score=70.15  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~   65 (146)
                      +||+|||+|++|+++|..|+++ | .+|+|+|+.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~-Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Confidence            6999999999999999999997 8 599999998765

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.43  E-value=9.9e-08  Score=69.22  Aligned_cols=37  Identities=22%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+||+||||+|+||..+|..+++...++|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            5899999999999999999999973467999998764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.42  E-value=1.6e-07  Score=69.23  Aligned_cols=41  Identities=27%  Similarity=0.356  Sum_probs=36.2

Q ss_pred             cccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        24 ~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .....+||+||||+|++|+.+|..+++. |.+|++||+.+..
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~a~~-G~kv~vve~~~~l   77 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPFL   77 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCcc
Confidence            3445689999999999999999999996 9999999998764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.42  E-value=1.1e-07  Score=72.56  Aligned_cols=37  Identities=30%  Similarity=0.487  Sum_probs=33.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE   67 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~   67 (146)
                      -.++|||||++|+++|.+|+++ |++|+|+|+.+..+.
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~-G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSG
T ss_pred             CEEEEECCcHHHHHHHHHHHhC-CCCEEEEECCCCCcC
Confidence            3689999999999999999997 999999999988753

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=1.1e-07  Score=70.02  Aligned_cols=33  Identities=33%  Similarity=0.481  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .||+||||+|+||+.+|..+++. |.||+|||..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~-G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEEec
Confidence            69999999999999999999996 9999999974

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.41  E-value=1.4e-07  Score=68.51  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +..|+|||+|++|+++|..|+++ |++|.||||.+..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~   39 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQP   39 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCC
Confidence            45799999999999999999997 9999999997653

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=3.1e-07  Score=69.35  Aligned_cols=39  Identities=36%  Similarity=0.492  Sum_probs=34.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~~   66 (146)
                      ..+|++|||+|++|+.+|+.|++ .+|++|+|+|+.+..+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            46899999999999999999997 3599999999987764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=3.3e-07  Score=64.92  Aligned_cols=38  Identities=26%  Similarity=0.383  Sum_probs=34.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ...+++|||+|++|+.+|..|+++ |++|.|+|+.+..+
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~-G~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIG   79 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSC
T ss_pred             CCcEEEEECccHHHHHHHHHHHhh-ccceEEEeccCccC
Confidence            456999999999999999999997 99999999988764

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2.6e-07  Score=69.99  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      ++||||||+|.||+.+|.+++++ ++.+|+|||++..
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~   41 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            68999999999999999999984 3779999999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.8e-07  Score=65.74  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++.|++|||+|++|+.+|..|++. |.+|+|||+...
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~-g~~v~iie~~~~   39 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCSST
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEEeecc
Confidence            3568999999999999999999996 999999998765

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.28  E-value=2.7e-07  Score=65.13  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|++|||+|++|+.+|..|++. |.+|+|+|+...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~-g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc-CCcEEEEEeecc
Confidence            468999999999999999999996 999999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.27  E-value=6.1e-07  Score=65.06  Aligned_cols=39  Identities=28%  Similarity=0.387  Sum_probs=35.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ....+++|||+|++|+.+|.+|+++ |++|+|+|+.+..+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~-G~~v~l~E~~~~~G   85 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIG   85 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHh-ccceeeEeeccccC
Confidence            4567999999999999999999996 99999999998764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.20  E-value=9.1e-07  Score=61.58  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~~   66 (146)
                      .-.|+|||+|++|+.+|..|+++ |+ .|.|+|+.+...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARL-GYSDITIFEKQEYVG   41 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCS
T ss_pred             CCEEEEECChHHHHHHHHHHHHC-CCCeEEEEEecCccc
Confidence            34799999999999999999997 87 599999998753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.10  E-value=1.7e-06  Score=61.98  Aligned_cols=37  Identities=27%  Similarity=0.216  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~   66 (146)
                      ..++|||+|+||+.+|..|+++ .+++|.|+|+.+.++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4789999999999999999874 378999999998764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.10  E-value=1.1e-06  Score=62.88  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCC-------CcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELD-------WRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g-------~~VlvLE~G~~~~   66 (146)
                      +.+.|||+|++|+++|+.|+++ |       ++|.|+|+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSSSCS
T ss_pred             cEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCCCCC
Confidence            6899999999999999999996 6       5899999998764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.85  E-value=7e-06  Score=62.03  Aligned_cols=36  Identities=36%  Similarity=0.477  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~   66 (146)
                      .|+|||||++|+.+|..|.+. .+.+|.|+||.+..+
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iG   42 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG   42 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            699999999999999999875 236999999997653

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.70  E-value=1.7e-05  Score=57.14  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~   64 (146)
                      ++||||+|++|..+|.++++.  .+++|.|+|++..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            789999999999999988763  2568999999753

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.69  E-value=3.3e-06  Score=60.11  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      .++|||+|.+|+++|++|+++ |++|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~-G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCceEEee
Confidence            489999999999999999997 888777766

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=2.8e-05  Score=50.42  Aligned_cols=36  Identities=22%  Similarity=0.446  Sum_probs=33.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+-+|..|++. |.+|.|+|+++..-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~-G~~Vtlve~~~~il   58 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANF-GTKVTILEGAGEIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSS
T ss_pred             CeEEEECCCccceeeeeeeccc-ccEEEEEEecceec
Confidence            4799999999999999999996 99999999998753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.59  E-value=4.6e-05  Score=49.98  Aligned_cols=36  Identities=31%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+-+|..|++. |++|.++|+++..-
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRLM   66 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTT
T ss_pred             CeEEEECcchhHHHHHHHhhcc-cceEEEEeeccccc
Confidence            5799999999999999999996 99999999998753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.54  E-value=5.3e-05  Score=48.97  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+-+|..|++. |++|.|+|+++..-
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~-g~~Vtlve~~~~il   57 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERIL   57 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhc-ccceEEEeeecccc
Confidence            3799999999999999999997 99999999997753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.54  E-value=4.1e-05  Score=50.10  Aligned_cols=36  Identities=39%  Similarity=0.498  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -+++|||+|+.|+-+|..|++. |++|.|+|+++...
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~l~   68 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMFL   68 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCCT
T ss_pred             CcEEEECCcHHHHHHHHHhhcc-cceEEEEecccccc
Confidence            4799999999999999999996 99999999987653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.52  E-value=6.7e-05  Score=49.17  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      -.++|||+|+.|+-+|..|++. |++|.++|+.+..
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~-g~~Vtlie~~~~~   65 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRP   65 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CEEEEECChHHHHHHHHHhhcc-ceEEEEEEecCcc
Confidence            3799999999999999999996 9999999999765

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=7.2e-05  Score=48.48  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .++|||+|+.|+-+|..|++. |.+|.|+|+++...
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~-G~~Vtlve~~~~~l   57 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGL-GAKTHLFEMFDAPL   57 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSS
T ss_pred             EEEEECCChhhHHHHHHhhcc-ccEEEEEeecchhh
Confidence            699999999999999999996 99999999998754

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=9.2e-05  Score=52.65  Aligned_cols=38  Identities=24%  Similarity=0.472  Sum_probs=32.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .++++||||+|++|+.+|.+|++. +..+|++|++.+..
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            588999999999999999999874 24579999987654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.44  E-value=8.4e-05  Score=49.38  Aligned_cols=37  Identities=19%  Similarity=0.375  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .-.++|||+|+.|+-+|..|++. |++|.|+|+++..-
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~-g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAARVL   71 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTT
T ss_pred             CCEEEEECCchHHHHHHHHHHhh-Ccceeeeeeccccc
Confidence            34799999999999999999996 99999999998763

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.40  E-value=9.4e-05  Score=49.73  Aligned_cols=34  Identities=35%  Similarity=0.551  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~   64 (146)
                      .+||||+|++|+.+|.+|.+. +..+|.|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            689999999999999999985 2358999998865

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.39  E-value=0.00019  Score=48.75  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .-|++|||+|+.|+-+|..|++. +.+|.|+|..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~-g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHc-CCceEEEEecCcc
Confidence            34899999999999999999996 8888888887654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.34  E-value=0.00012  Score=47.50  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+-+|..|++. |.+|.|+|+++..-
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~il   58 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSSC
T ss_pred             CEEEEECCchHHHHHHHHHHhc-cccceeeehhcccc
Confidence            3699999999999999999996 99999999997753

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.23  E-value=0.00018  Score=49.29  Aligned_cols=36  Identities=19%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +-.++|||+|++|+-+|..|++. +.+|.+++.++..
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~-g~~v~i~~~~~~~   38 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEA   38 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSC
T ss_pred             CCCEEEECccHHHHHHHHHHHhc-CCceEEEEEeccc
Confidence            45699999999999999999996 8887777776554

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.22  E-value=0.00023  Score=46.21  Aligned_cols=36  Identities=19%  Similarity=0.154  Sum_probs=32.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+-|+-+|..|++. |.+|.++|+.+...
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~-G~~Vtiv~~~~~ll   58 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARL-GAEVTVLEAMDKFL   58 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHc-CCceEEEEeecccC
Confidence            4799999999999999999996 99999999997753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00022  Score=46.69  Aligned_cols=36  Identities=22%  Similarity=0.134  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+=+|..|++. |.+|.++|+++..-
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHDKVL   58 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             CEEEEEcCCccHHHHHHHHhcC-CcEEEEEeeccccc
Confidence            3799999999999999999996 99999999997653

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.20  E-value=0.00024  Score=56.98  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=37.2

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      ....+||+||+|.|..=+++|..|++. |+|||.||+.+..+
T Consensus         2 ~lP~e~DVII~GTGL~ESILAaAlSr~-GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           2 NLPSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYG   42 (491)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CCCCccCEEEECCChHHHHHHHHHHhc-CCEEEEecCCCcCC
Confidence            345689999999999999999999997 99999999998775

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00028  Score=46.00  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=32.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+=+|..|++. |.+|.|+|+.+..-
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~l-G~~Vtii~~~~~~l   59 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQPQIG   59 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhh-CcceeEEEeccccc
Confidence            3799999999999999999996 99999999998764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.99  E-value=0.00053  Score=44.08  Aligned_cols=36  Identities=11%  Similarity=0.195  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+=+|..|++. +.+|.++|+++...
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~-g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNAT-GRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-chhheEeeccchhh
Confidence            4899999999999999999996 99999999997653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.99  E-value=0.00037  Score=46.74  Aligned_cols=33  Identities=36%  Similarity=0.623  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|||+|++|+-+|..|++  +.+|.|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc--CCCEEEEeccccc
Confidence            47999999999999999976  6799999987654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.99  E-value=0.00034  Score=45.61  Aligned_cols=35  Identities=14%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .++|||+|.-|+=+|..+++. |.+|.|+|+++..-
T Consensus        27 ~~viiG~G~iglE~A~~~~~~-G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFASEIV   61 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHH-TCEEEEECSSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhc-CCeEEEEEEccccC
Confidence            789999999999999999997 99999999998764

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.95  E-value=0.00053  Score=47.52  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~   65 (146)
                      .++|||+|++|+-+|..|++. ++.+|.++|+++..
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            389999999999999999983 36689999998654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.94  E-value=0.00053  Score=44.95  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=32.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+=+|..+++. |.+|.++|+++..-
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~-G~~Vtive~~~~il   62 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMDGLM   62 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcC-CCEEEEEEeecccc
Confidence            3799999999999999999997 99999999998764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.86  E-value=0.00046  Score=46.48  Aligned_cols=33  Identities=12%  Similarity=0.193  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|||+|..|..+|..|+++ |++|.|++|-..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDS-GIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTT-TCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECChH
Confidence            589999999999999999997 999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.80  E-value=0.00096  Score=43.36  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .++|||+|+.|+=+|..|++. |.+|.|||+.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~l-G~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhc-CCeEEEEEec
Confidence            799999999999999999996 9999999975

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0013  Score=43.35  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+=+|..|++   +.|.+|.++|+++..-
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l   77 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM   77 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence            379999999999999999974   2489999999987753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.56  E-value=0.0012  Score=42.31  Aligned_cols=37  Identities=24%  Similarity=0.176  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+-+|..|++-  .+.+|.|+|+++..-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            4799999999999999776652  256799999997653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0017  Score=43.37  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .+.|||+|.-|...|..|+++ |++|.++.|.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCceEEEEcCHHH
Confidence            478999999999999999996 9999999998764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.54  E-value=0.0014  Score=44.53  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+.|||+|..|..+|..|+++ |++|.++++.+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            478999999999999999997 99999999964

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.52  E-value=0.0014  Score=42.69  Aligned_cols=33  Identities=21%  Similarity=0.458  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .|||||.|..|..+|.+|.+. |+.|+++|..+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~-g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEecCcHH
Confidence            589999999999999999996 999999998654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.32  E-value=0.0026  Score=41.43  Aligned_cols=33  Identities=39%  Similarity=0.554  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+|.|.-|..+|.+|.+. |+.|+++|+.++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~-g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCcceecCChh
Confidence            478999999999999999996 999999999754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.30  E-value=0.0032  Score=40.11  Aligned_cols=37  Identities=22%  Similarity=0.093  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGDPP   66 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~~~   66 (146)
                      -.++|||+|+.|+=+|..|++-  .|.+|.++|+++..-
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            4799999999999999876641  378999999997753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.87  E-value=0.0058  Score=40.59  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=29.6

Q ss_pred             cEEEE--CCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          31 DFIIV--GGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        31 D~iII--G~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .++|+  |+|..|+-+|..|++. |++|.|+|+.+..
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~-G~~Vtlv~~~~~~   76 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSCTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            45554  9999999999999997 9999999998765

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0064  Score=37.21  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .++|+|.|.+|.++|..|.++ |.+|.+.|......
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~-g~~v~~~D~~~~~~   41 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTPP   41 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESSSSCT
T ss_pred             EEEEEeECHHHHHHHHHHHHC-CCEEEEeeCCcCch
Confidence            589999999999999999997 99999999876543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.011  Score=40.95  Aligned_cols=33  Identities=27%  Similarity=0.498  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.|||+|..|...|..++.+ |+.|.++|+-+.
T Consensus         6 kvaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~~   38 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTED   38 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCcEEEEECChH
Confidence            578999999999999999996 999999988754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.52  E-value=0.017  Score=39.83  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.|||+|..|...|..++.+ |++|.++|.-+.
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~~   38 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASK-GTPILMKDINEH   38 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHT-TCCEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCHH
Confidence            588999999999999999996 999999988643

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.45  E-value=0.023  Score=38.72  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .+.|||+|.-|.+.|..|+++ |++|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~-g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            478999999999999999997 9999998663

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.37  E-value=0.015  Score=40.30  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ..+.|||+|.-|.++|..|++. |++|.+..+.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~-g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKK-CREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-EEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCeEEEEEecH
Confidence            3689999999999999999996 89999988653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.31  E-value=0.03  Score=37.35  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|||+|..|+=+|..+.+....+|.++++.+.
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            7999999999999999988864467889988754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.18  E-value=0.022  Score=39.51  Aligned_cols=31  Identities=32%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.|||.|.-|+.+|..|+++ |++|..+|...
T Consensus         3 I~ViGlG~vGl~~a~~la~~-g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHhC-CCcEEEEeCCH
Confidence            67999999999999999997 99999999753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.13  E-value=0.031  Score=37.13  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +-|||.|..|...|..|.++ |++|.+.++.+
T Consensus         3 I~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHC-CCEEEEEECCc
Confidence            67999999999999999996 99999998864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.09  E-value=0.031  Score=36.91  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             EEEE-CCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          32 FIIV-GGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iII-G~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +.|| |+|.-|..+|..|+++ |++|++..|.+.
T Consensus         3 i~vigGaG~iG~alA~~la~~-G~~V~l~~R~~e   35 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATL-GHEIVVGSRREE   35 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCEEEEEESSHH
T ss_pred             EEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCHH
Confidence            6788 7799999999999997 999999988643

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.97  E-value=0.032  Score=34.77  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=26.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .-+++|||+|.+|.=.|..|++. .++|.++.+.
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~-ak~v~~~~~r   64 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPV-AKHPIYQSLL   64 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT-SCSSEEEECT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHh-cCEEEEEEec
Confidence            34899999999999999999996 5555555554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.75  E-value=0.037  Score=36.27  Aligned_cols=34  Identities=21%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.+.||| .|..|..+|..|.++ |+.|.+.++...
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~~   44 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRAS-GYPISILDREDW   44 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTCG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHc-CCCcEecccccc
Confidence            3789999 799999999999996 999999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.07  Score=34.91  Aligned_cols=34  Identities=21%  Similarity=0.161  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +-.+||+|.|.-|..++.+|.+. |.+|+++|.-+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~-~~~v~vId~d~   36 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQR-GQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEeccc
Confidence            34699999999999999999996 99999999765

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.068  Score=34.32  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .-+++|||+|-+.+-.|..|++- ..+|.++.+++..
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~-a~~V~li~r~~~~   65 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEM   65 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSSSC
T ss_pred             CceEEEEeCCHHHHHHHHhhhcc-CCceEEEeccccc
Confidence            34999999999999999999996 7899999998764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.36  E-value=0.087  Score=34.10  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP   66 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~   66 (146)
                      .-+++|||+|-+.+-.|..|++- -.+|.++.|++...
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~~r   70 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDAFR   70 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSSSCC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCC-CCcEEEEEeccccc
Confidence            45999999999999999999996 78999999987653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.91  E-value=0.11  Score=32.33  Aligned_cols=33  Identities=30%  Similarity=0.331  Sum_probs=29.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G   62 (146)
                      .-.++|||+|..|...|..|.+. |.+|.++...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~-ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            45899999999999999999996 9999998654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.85  E-value=0.067  Score=35.03  Aligned_cols=33  Identities=18%  Similarity=0.413  Sum_probs=29.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA   61 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~   61 (146)
                      +.-.++|||+|..|..-|..|.+. |.+|.|+..
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~-GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPT-GCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGG-TCEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence            345799999999999999999996 999999954

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.1  Score=33.41  Aligned_cols=36  Identities=25%  Similarity=0.232  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      .-+++|||+|-+++=.|..|++- ..+|.+|-|++..
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~~   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGF   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhc-CCcEEEEeecccc
Confidence            44999999999999999999995 8899999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.33  E-value=0.14  Score=34.74  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...++|||+|.+|..++...... |-.|.++|....
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~   66 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVE   66 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHH
T ss_pred             CcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHH
Confidence            56899999999999988887775 999999998643

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=91.22  E-value=0.22  Score=32.91  Aligned_cols=40  Identities=13%  Similarity=0.134  Sum_probs=31.5

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -...+..+.|||+|.-|..+|+.|+.++-..+++++....
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            3456788999999999999999999863347888876543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=91.00  E-value=0.16  Score=33.94  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.++=+||-|..|..+|.+|.++ |++|.+.++-+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~-G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            34788999999999999999996 99999998754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.82  E-value=0.18  Score=34.70  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|||+|.+|..+|.-.... |-.|.++|....
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHH
Confidence            45999999999999988777665 999999998754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.62  E-value=0.18  Score=33.14  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=27.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+|+|+.|..++.-+.. .|.+|+++|+.+.
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~-~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKA-YGAFVVCTARSPR   61 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             EEEEEcccccchhhHhhHhh-hcccccccchHHH
Confidence            68899999999998766655 4899999998653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.16  E-value=0.0073  Score=42.64  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...++|||+|..|+-+|..|++. +.+|.|+++.+..
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~r~~~~  215 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEA-NPQIAIPYKRETI  215 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSS-CTTSCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhc-CCceEEEEecccc
Confidence            34789999999999999999996 9999999998664

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.82  E-value=0.26  Score=32.34  Aligned_cols=35  Identities=14%  Similarity=0.362  Sum_probs=29.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~   63 (146)
                      .+..+.|||+|.-|..+|+.|+++ +  ..+.++|.-.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~-~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQ-GIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc-CCCcEEEEeeccc
Confidence            355799999999999999999996 5  4789998653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=89.64  E-value=0.22  Score=33.15  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-+++|+|+|=++-++++.|.+. |.++.|+-|-.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~-g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSL-DCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhccc-ceEEEeccchH
Confidence            45799999999999999999996 78899987753

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.51  E-value=0.08  Score=33.99  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=26.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcE-EEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRV-LLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~V-lvLE~G~   63 (146)
                      .++.++|+|+|.+|..++..+....+.++ -.++--+
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            56789999999999999887765445544 5566443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.24  E-value=0.2  Score=33.04  Aligned_cols=31  Identities=19%  Similarity=0.317  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +-+||-|..|..+|.+|.++ |+.|.+.++..
T Consensus         4 Ig~IGlG~MG~~iA~~L~~~-g~~v~~~d~~~   34 (162)
T d3cuma2           4 IAFIGLGHMGAPMATNLLKA-GYLLNVFDLVQ   34 (162)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEEEHHHHHHHHHHHHHC-CCeEEEEECch
Confidence            67999999999999999996 99999998864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.12  E-value=0.21  Score=33.96  Aligned_cols=34  Identities=12%  Similarity=0.289  Sum_probs=27.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .-+|+|||+|..|.=+|.+++++ +.++.++=+.+
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~-~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhh-hcccccccccc
Confidence            45899999999999999999997 66666555443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.29  Score=32.27  Aligned_cols=34  Identities=15%  Similarity=0.249  Sum_probs=27.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      -.++|+|+|+.|..++.-+... |. +|+++|..+.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSAT   62 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHH
T ss_pred             CEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHH
Confidence            3689999999999988777665 66 7999987653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.98  E-value=0.34  Score=31.92  Aligned_cols=35  Identities=17%  Similarity=0.063  Sum_probs=27.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|+|..|..++.-+... |.+|++++..+.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhc-cccccccccchh
Confidence            34688999999999876655554 999999998655

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.77  E-value=0.21  Score=33.78  Aligned_cols=30  Identities=23%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      +.|||.|.-|+.+|..++ + |++|+.+|-.+
T Consensus         3 I~ViGlG~vGl~~a~~~a-~-g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLS-L-QNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHT-T-TSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHH-C-CCcEEEEECCH
Confidence            679999999999998776 4 89999998654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.54  E-value=0.2  Score=33.02  Aligned_cols=32  Identities=13%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +=|||-|..|..+|.+|.++ |++|.+.++.+.
T Consensus         3 IgiIGlG~MG~~~A~~L~~~-G~~V~~~d~~~~   34 (161)
T d1vpda2           3 VGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNPE   34 (161)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             EEEEehhHHHHHHHHHHHHC-CCeEEEEeCCcc
Confidence            56899999999999999996 999999988654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.38  E-value=0.25  Score=32.82  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .+=|||-|..|..+|.+|.++ |++|.+.++.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~-G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            466999999999999999997 99999987643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.18  E-value=0.36  Score=31.51  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=26.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|+|+|+.|..++.-+.. .|.+|+++++.+.
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~-~G~~Vi~~~~~~~   62 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARA-MGLHVAAIDIDDA   62 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             CEEEEeeccccHHHHHHHHHH-cCCccceecchhh
Confidence            368999999999886665544 4899999988754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.12  E-value=0.28  Score=34.08  Aligned_cols=36  Identities=14%  Similarity=0.270  Sum_probs=31.1

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      +-.++|+|+ |.-|..++.+|.++ |++|.++.|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~-G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEECCCcc
Confidence            346899996 99999999999996 9999999987553

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.05  E-value=0.32  Score=31.13  Aligned_cols=35  Identities=14%  Similarity=0.450  Sum_probs=29.2

Q ss_pred             cccEEEECCCH-----------HHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGS-----------AGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~-----------aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|||+|+           ++..++..|.+. |.+++++--.+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~-g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALRED-GYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT-TCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhc-CCeEEEEecChh
Confidence            34689999996           888899999996 999999966554

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.47  E-value=0.38  Score=31.13  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +-|||.|..|..+|.+|.++ |+.|.+..+.+.
T Consensus         3 IgiIG~G~mG~~ia~~l~~~-g~~v~~~~~~~~   34 (152)
T d1i36a2           3 VGFIGFGEVAQTLASRLRSR-GVEVVTSLEGRS   34 (152)
T ss_dssp             EEEESCSHHHHHHHHHHHHT-TCEEEECCTTCC
T ss_pred             EEEEcHHHHHHHHHHHHHHC-CCeEEEEcCchh
Confidence            67999999999999999997 999999877654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.32  E-value=0.52  Score=29.39  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ...+-|+|+|--|-++|....+. |.+|.+++..++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~l-G~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRL-GVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTT-TCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHC-CCEEEEEcCCCCC
Confidence            34799999999999999998885 9999999998664

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=86.32  E-value=0.51  Score=30.58  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=27.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.|||+|.-|..+|+.|+.++-..+++++.-..
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            4679999999999999999863348888876443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.28  E-value=0.47  Score=31.00  Aligned_cols=32  Identities=22%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~   63 (146)
                      .+.|||.|.-|.+.|..|.+. |.  +|...|+-.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECCh
Confidence            478999999999999999985 64  677777754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=86.12  E-value=0.52  Score=30.48  Aligned_cols=34  Identities=24%  Similarity=0.556  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .+.+||.|..|...|..|.++.++++.+.++.+.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            4679999999999999998874599999988754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.09  E-value=0.47  Score=30.56  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=29.2

Q ss_pred             cccEEEECCCH-----------HHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGS-----------AGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~-----------aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|||+|+           ++.-++..|.+. |.+++++--.+.
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~-g~~~iliN~NP~   52 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREE-GYRVINVNSNPA   52 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH-TCEEEEECSCTT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHc-CCeEEEecCchH
Confidence            34699999997           888899999997 999999966544

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=85.71  E-value=0.53  Score=32.93  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=29.8

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +-.++|+|+ |.-|..++.+|.++ |++|.++-|...
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCCc
Confidence            345899996 99999999999996 999999988643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=85.28  E-value=0.57  Score=30.68  Aligned_cols=35  Identities=14%  Similarity=0.099  Sum_probs=26.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|+|..|..++.-+.. .|.++++++..+.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~-~Ga~~i~~~~~~~   65 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTTSEA   65 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSGG
T ss_pred             CCEEEEeccchHHHHHHHHhhc-ccccchhhccchh
Confidence            4468999999999886655544 4989989887654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.25  E-value=0.62  Score=31.62  Aligned_cols=36  Identities=14%  Similarity=0.052  Sum_probs=27.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|+|+.|+.++.-+......+|++.+..+.
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            448889999999988777766554558888887643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.08  E-value=0.57  Score=30.74  Aligned_cols=34  Identities=15%  Similarity=0.204  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+|+|..|..++..++...+.+|..+++.+.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            4788899999999998888865667888887654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.05  E-value=0.73  Score=29.97  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=27.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G   62 (146)
                      ...+.|||+|.-|..+|+.|..+ +.  .+.|+|.-
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~-~l~~el~L~Di~   40 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDAN   40 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhc-CCCceEEEEeec
Confidence            45789999999999999999986 44  58888764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=84.92  E-value=0.92  Score=30.08  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=29.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecC
Q psy3408          27 SGKFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAG   62 (146)
Q Consensus        27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G   62 (146)
                      .++..+.|||+|.-|..+|+.|..+ +.  .+.|+|.-
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~-~l~~ElvLiD~~   54 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGK-SLADELALVDVL   54 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEec
Confidence            3467999999999999999999996 54  67888764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.77  E-value=0.59  Score=31.14  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -++|+|+|..|+.++.-+......+|+++|..++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            4899999999999888887763368999998655

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=84.48  E-value=0.69  Score=30.13  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=25.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC--cEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW--RVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G   62 (146)
                      .+.|||+|.-|..+|+.|..+ +.  .+++++..
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~   35 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDAN   35 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhc-CCCceEEEEecc
Confidence            467999999999999999986 43  57777754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=84.43  E-value=0.63  Score=30.63  Aligned_cols=34  Identities=15%  Similarity=0.184  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -++|+|+|..|..++..++...+.+|.+++..+.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            3889999999999888888864578999988765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.43  E-value=0.7  Score=31.02  Aligned_cols=36  Identities=19%  Similarity=0.131  Sum_probs=30.2

Q ss_pred             CCcccEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          27 SGKFDFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        27 ~~~~D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ...-.++|.| +|-.|..+|.+|++. |.+|.++.|-.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~   57 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKL   57 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccch
Confidence            3455788888 688999999999997 99999998864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=84.26  E-value=0.67  Score=30.71  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=26.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~   64 (146)
                      -.++|+|+|+.|..++.-+... |. +|+++|..+.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHH
T ss_pred             CEEEEECCCccchhheeccccc-ccccccccccccc
Confidence            4688999999998866665554 75 7999988654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.03  E-value=0.78  Score=30.61  Aligned_cols=36  Identities=14%  Similarity=0.198  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|+|-++-.+++.|.+....++.|..|-..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            458999999999999999999974557788877543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.95  E-value=0.72  Score=30.88  Aligned_cols=36  Identities=22%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .--.++|+|-|..|..+|.+++.. |.+|++.|.-+.
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~-G~~V~v~e~dp~   58 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGF-GARVIITEIDPI   58 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             cCCEEEEeccccccHHHHHHHHhC-CCeeEeeecccc
Confidence            345799999999999999999996 999999998754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=83.84  E-value=0.67  Score=32.33  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ...|+|||.|--|+.+|..|++.+=.++.|+|....
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            568999999999999999999974447788876544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.54  E-value=0.62  Score=30.16  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=25.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|+|+|+.|..++.-+.. .|.+|.+++..+.
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~   62 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDE   62 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             CEEEEeecccchhhhhHHHhc-CCCeEeccCCCHH
Confidence            367899999999886555555 5899999987543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=83.46  E-value=0.8  Score=29.74  Aligned_cols=31  Identities=19%  Similarity=0.458  Sum_probs=25.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC--cEEEEecC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW--RVLLIEAG   62 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G   62 (146)
                      .+.|||+|.-|..+|+.|..+ +.  .+.|++..
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~-~l~~ElvL~D~~   35 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIA   35 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEec
Confidence            478999999999999999986 44  57777754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.29  E-value=0.2  Score=32.62  Aligned_cols=25  Identities=28%  Similarity=0.217  Sum_probs=21.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCc
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWR   55 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~   55 (146)
                      -.++|||+|..|+-+|..+.+. |.+
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~-G~~   54 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQP-GES   54 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCC-SSC
T ss_pred             CceEEEcCchhHHHHHHHHHHc-CCc
Confidence            4899999999999999999996 543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=0.82  Score=30.65  Aligned_cols=33  Identities=15%  Similarity=0.316  Sum_probs=28.8

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .++|+| +|..|..++.+|.++ |++|.++-|.+.
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~~   38 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSS   38 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-cCEEEEEEcChh
Confidence            488999 599999999999997 999999987543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=83.06  E-value=0.56  Score=31.20  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      ...++|+|+|-++-++++.|.+. +.++.|+-|-.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~-~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQA-QQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHT-TCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHccc-CceeeeccchH
Confidence            45799999999999999999985 78999998864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.96  E-value=1  Score=29.74  Aligned_cols=39  Identities=18%  Similarity=0.310  Sum_probs=30.3

Q ss_pred             ccccCCcccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecC
Q psy3408          23 EDNISGKFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAG   62 (146)
Q Consensus        23 ~~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G   62 (146)
                      +.....+..+.|||+|.-|..+|+.|..+ +.  .+.|++.-
T Consensus        13 ~~~~~~~~KI~IIGaG~VG~~~A~~l~~~-~l~~elvL~D~~   53 (159)
T d2ldxa1          13 PEDKLSRCKITVVGVGDVGMACAISILLK-GLADELALVDAD   53 (159)
T ss_dssp             SCCCCCCCEEEEECCSHHHHHHHHHHHTT-TSCSEEEEECSC
T ss_pred             ccccCCCCeEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCC
Confidence            33444556799999999999999999986 44  58888754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.91  E-value=0.54  Score=32.58  Aligned_cols=32  Identities=19%  Similarity=0.415  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408          31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG   63 (146)
Q Consensus        31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~   63 (146)
                      .++|.|+ |.-|..++.+|.++ |++|+.+.+..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~-g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGK-NVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTS-SEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhC-CCEEEEeechh
Confidence            4899997 99999999999986 99999998864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=82.59  E-value=1  Score=29.47  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=27.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      .-.++|+|+|..|..++.-+......+|++.+..+.
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~   68 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE   68 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH
Confidence            446899999999999887776664457777777653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=82.56  E-value=1  Score=29.11  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=26.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDP   65 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~~~   65 (146)
                      .+.|||+|.-|..+|+.|..+ +.  .+.|+|...+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALR-QTANELVLIDVFKEK   38 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC---
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeccCCc
Confidence            578999999999999999986 44  68999876543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.12  E-value=1  Score=29.64  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=25.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcE-EEEecCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRV-LLIEAGG   63 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~V-lvLE~G~   63 (146)
                      +.-.++|+|+|..|..++.-+... |.++ .+.+..+
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhccccc-ccceeeeeccHH
Confidence            344799999999999988777665 5554 5556543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=81.82  E-value=0.84  Score=30.08  Aligned_cols=33  Identities=9%  Similarity=0.224  Sum_probs=28.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecC
Q psy3408          29 KFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAG   62 (146)
Q Consensus        29 ~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G   62 (146)
                      .-.++|+|+|-++-++++.|.+. | .++.|+-|-
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~-g~~~I~I~nR~   50 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARN   50 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeccc
Confidence            45799999999999999999996 6 478888764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.75  E-value=0.79  Score=29.70  Aligned_cols=32  Identities=13%  Similarity=0.268  Sum_probs=28.2

Q ss_pred             EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      +-+||.|..|..+|..|.+. ++++.+.++...
T Consensus         3 Ig~IG~G~mG~al~~~l~~~-~~~i~v~~r~~~   34 (152)
T d2ahra2           3 IGIIGVGKMASAIIKGLKQT-PHELIISGSSLE   34 (152)
T ss_dssp             EEEECCSHHHHHHHHHHTTS-SCEEEEECSSHH
T ss_pred             EEEEeccHHHHHHHHHHHhC-CCeEEEEcChHH
Confidence            67999999999999999986 899999987643

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.66  E-value=1.2  Score=31.17  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408          28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP   65 (146)
Q Consensus        28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~   65 (146)
                      ..-.+++.|+|.+|.-.|..|.+..-+++.++|+..-.
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            45579999999999999999988667889999986443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=80.10  E-value=1.1  Score=29.54  Aligned_cols=35  Identities=14%  Similarity=0.079  Sum_probs=27.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      -.++|+|+|..|+.++.-+......+|.+++....
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            35899999999999888887763357888887654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.03  E-value=0.7  Score=28.89  Aligned_cols=31  Identities=13%  Similarity=0.198  Sum_probs=25.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408          31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD   64 (146)
Q Consensus        31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~   64 (146)
                      ++||+|.|..|..++.+|.   +..|.+||.-+.
T Consensus         2 HivI~G~g~~g~~l~~~L~---~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR---GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC---GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc---CCCCEEEEcchH
Confidence            5899999999999999994   456888887654