Psyllid ID: psy3415

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
QPPTITTSAPEDPTEEVEEEEPLIDQLLASYRTQSPVSRDQYNFIGRHKNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIHDSTPQTSTIHHNNIHKLESSALSEEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN
Secondary Structure (PSIPRED)
cccccccccccccccHHHcccHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccHHHHHHHHccccHHHHHccccccccHcHHHHHcccccHHHHHcccccccccccccccccccccEEEEcEEEcccEEEEcccccEEcHHHHHHHHHHcccccHHccHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
qpptittsapedpteeveeeePLIDQLLASyrtqspvsrdqynfigrhknidellgnevpppaapvtpqssddegdcyagnkvnlddvkihdstpqtstihhnnihklessalseemdssslssggqlrccdtgrklhtgrsrndmivTDLRLYTRKHIDIIIELLLTMIKHLTKN
Flexible Loop (DISEMBL)
qpptittsapedpteeveEEEPLIDQLLASYRTQSPVSRDQYNFIGRHKNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIHDStpqtstihhnnIHKLESSALSEEMDSsslssggqlrccdtgrklhtgrsrndmivtdlrlytRKHIDIIIELLLTMIKHLTKN
Low Complexity Region (SEG)
QPPTITTSApedpteeveeeepLIDQLLASYRTQSPVSRDQYNFIGRHKNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIHDSTPQTSTIHHNNIHKlessalseemdssslssGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN
Disordered region (IsUnstruct)
*****************************************YNFIG***********************************************************************************CCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL***
Disordered Region (DISOPRED)
***********************IDQLLASYRTQSPVSRDQYNFIGRHKNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIHDSTPQTSTIHHNNIHKLESSALSEEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN
Disordered Region (DISEMBL)
*********************PLIDQLLASYRTQSPVSRDQYNFIGRHKNIDELLGNEVPPPA***********GDCYAGNKVNLDDVKIHDSTPQTSTIHHNNIHKLES*****************LRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN
Disordered Region (DISPRO)
****ITTSAPEDPTEEVEEEEPLIDQLLASYRTQSPVSRDQYNFIGRHKNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIHDSTPQTSTIHHNNIHKLESSALSEEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QPPTITTSAPEDPTEEVEEEEPLIDQLLASYRTQSPVSRDQYNFIGRHKNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIHDSTPQTSTIHHNNIHKLESSALSEEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q15X84	458	Argininosuccinate lyase O	yes	N/A	0.255	0.098	0.533	1e-08
C5CRT0	465	Argininosuccinate lyase O	yes	N/A	0.357	0.135	0.402	1e-07
Q6FFB2	477	Argininosuccinate lyase O	yes	N/A	0.255	0.094	0.577	1e-07
Q2SQ67	468	Argininosuccinate lyase O	yes	N/A	0.238	0.089	0.571	2e-07
B4S0H4	460	Argininosuccinate lyase O	yes	N/A	0.323	0.123	0.414	4e-07
Q2L1J6	470	Argininosuccinate lyase O	yes	N/A	0.198	0.074	0.6	7e-07
B0VMC7	477	Argininosuccinate lyase O	yes	N/A	0.255	0.094	0.577	7e-07
B2I1W9	477	Argininosuccinate lyase O	yes	N/A	0.255	0.094	0.577	7e-07
B0VDE4	477	Argininosuccinate lyase O	yes	N/A	0.255	0.094	0.577	8e-07
B7I338	477	Argininosuccinate lyase O	yes	N/A	0.255	0.094	0.577	8e-07

>sp|Q15X84|ARLY_PSEA6 Argininosuccinate lyase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=argH PE=3 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN 176
           D  RKLHTGRSRND + TD RL+TR+H+D+++E +  +I  L  N
Sbjct: 98  DVARKLHTGRSRNDQVATDFRLWTREHVDLLVEDVEAVIASLVGN 142

Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) (taxid: 342610)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 1

>sp|C5CRT0|ARLY_VARPS Argininosuccinate lyase OS=Variovorax paradoxus (strain S110) GN=argH PE=3 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 107 KLESSALSEEMDSSSLSSGGQLRCC----DTGRKLHTGRSRNDMIVTDLRLYTRKHIDII 162
           ++ES A   ++D   +    + R      D G++LHTGRSRND + TD+RL+ R  ID+I
Sbjct: 77  EIESGAFEWKLDLEDVHLNIEARLTQLVGDAGKRLHTGRSRNDQVATDVRLWLRGEIDLI 136

Query: 163 IELLLTM 169
            ELL+ +
Sbjct: 137 AELLVAL 143

Variovorax paradoxus (strain S110) (taxid: 543728)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

>sp|Q6FFB2|ARLY_ACIAD Argininosuccinate lyase OS=Acinetobacter sp. (strain ADP1) GN=argH PE=3 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 32/45 (71%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           R   TG+KLHTGRSRND + TD+RLY R  ID I+ +LL + K L
Sbjct: 110 RIGITGKKLHTGRSRNDQVATDIRLYLRDEIDDILTILLRLQKGL 154

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

>sp|Q2SQ67|ARLY_HAHCH Argininosuccinate lyase OS=Hahella chejuensis (strain KCTC 2396) GN=argH PE=3 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 133 TGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLT 174
           TG+KLHTGRSRND + TD+RLY R  +D+I   LL +I  L 
Sbjct: 105 TGKKLHTGRSRNDQVATDIRLYLRDEVDVIAAELLRLIAALA 146

Hahella chejuensis (strain KCTC 2396) (taxid: 349521)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

>sp|B4S0H4|ARLY_ALTMD Argininosuccinate lyase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=argH PE=3 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 13/70 (18%)

Query: 104 NIHKLESSALSEEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIII 163
           +IH    +AL E++              D GRKLHTGRSRND + TD RL+ R+HI  + 
Sbjct: 83  DIHSFVEAALIEKLG-------------DIGRKLHTGRSRNDQVATDFRLWVREHIASLR 129

Query: 164 ELLLTMIKHL 173
             +L +IK L
Sbjct: 130 ADVLGVIKSL 139

Alteromonas macleodii (strain DSM 17117 / Deep ecotype) (taxid: 314275)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

>sp|Q2L1J6|ARLY_BORA1 Argininosuccinate lyase OS=Bordetella avium (strain 197N) GN=argH PE=3 SV=1

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 29/35 (82%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELL 166
           D G++LHTGRSRND + TD+RL+ R  ID++I+LL
Sbjct: 111 DAGKRLHTGRSRNDQVATDIRLWLRDEIDLLIDLL 145

Bordetella avium (strain 197N) (taxid: 360910)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

>sp|B0VMC7|ARLY_ACIBS Argininosuccinate lyase OS=Acinetobacter baumannii (strain SDF) GN=argH PE=3 SV=1

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           R   TG+KLHTGRSRND + TD+RLY R  ID I+ LL  + K L
Sbjct: 110 RIGITGKKLHTGRSRNDQVATDIRLYLRDEIDDILGLLERLQKGL 154

Acinetobacter baumannii (strain SDF) (taxid: 509170)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

>sp|B2I1W9|ARLY_ACIBC Argininosuccinate lyase OS=Acinetobacter baumannii (strain ACICU) GN=argH PE=3 SV=1

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           R   TG+KLHTGRSRND + TD+RLY R  ID I+ LL  + K L
Sbjct: 110 RIGITGKKLHTGRSRNDQVATDIRLYLRDEIDDILGLLERLQKGL 154

Acinetobacter baumannii (strain ACICU) (taxid: 405416)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

>sp|B0VDE4|ARLY_ACIBY Argininosuccinate lyase OS=Acinetobacter baumannii (strain AYE) GN=argH PE=3 SV=1

 Score = 53.5 bits (127), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           R   TG+KLHTGRSRND + TD+RLY R  ID I+ LL  + K L
Sbjct: 110 RIGITGKKLHTGRSRNDQVATDIRLYLRDEIDDILGLLERLQKGL 154

Acinetobacter baumannii (strain AYE) (taxid: 509173)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

>sp|B7I338|ARLY_ACIB5 Argininosuccinate lyase OS=Acinetobacter baumannii (strain AB0057) GN=argH PE=3 SV=1

 Score = 53.5 bits (127), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 31/45 (68%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           R   TG+KLHTGRSRND + TD+RLY R  ID I+ LL  + K L
Sbjct: 110 RIGITGKKLHTGRSRNDQVATDIRLYLRDEIDDILGLLERLQKGL 154

Acinetobacter baumannii (strain AB0057) (taxid: 480119)

EC: 4

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
109897303	458	argininosuccinate lyase [Pseudoalteromon	0.255	0.098	0.533	6e-07
410642255	458	argininosuccinate lyase [Glaciecola chat	0.255	0.098	0.533	6e-07
332307781	458	argininosuccinate lyase [Glaciecola sp.	0.255	0.098	0.533	6e-07
410617444	458	argininosuccinate lyase [Glaciecola pola	0.255	0.098	0.511	2e-06
262370153	477	argininosuccinate lyase [Acinetobacter j	0.215	0.079	0.657	2e-06
410624885	458	argininosuccinate lyase [Glaciecola meso	0.255	0.098	0.511	2e-06
381196777	477	argininosuccinate lyase [Acinetobacter l	0.215	0.079	0.657	2e-06
407007319	459	hypothetical protein ACD_6C00643G0004 [u	0.215	0.082	0.657	4e-06
347818005	496	argininosuccinate lyase [Verminephrobact	0.340	0.120	0.437	4e-06
262375169	476	argininosuccinate lyase [Acinetobacter l	0.215	0.079	0.657	4e-06

>gi|109897303|ref|YP_660558.1| argininosuccinate lyase [Pseudoalteromonas atlantica T6c] gi|123064920|sp|Q15X84.1|ARLY_PSEA6 RecName: Full=Argininosuccinate lyase; Short=ASAL; AltName: Full=Arginosuccinase gi|109699584|gb|ABG39504.1| argininosuccinate lyase [Pseudoalteromonas atlantica T6c]

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN 176
           D  RKLHTGRSRND + TD RL+TR+H+D+++E +  +I  L  N
Sbjct: 98  DVARKLHTGRSRNDQVATDFRLWTREHVDLLVEDVEAVIASLVGN 142

Source: Pseudoalteromonas atlantica T6c

Species: Pseudoalteromonas atlantica

Genus: Pseudoalteromonas

Family: Pseudoalteromonadaceae

Order: Alteromonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|410642255|ref|ZP_11352770.1| argininosuccinate lyase [Glaciecola chathamensis S18K6] gi|410138205|dbj|GAC10957.1| argininosuccinate lyase [Glaciecola chathamensis S18K6]

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN 176
           D  RKLHTGRSRND + TD RL+TR+H+D+++E +  +I  L  N
Sbjct: 98  DVARKLHTGRSRNDQVATDFRLWTREHVDLLVEDVEAVIASLVGN 142

Source: Glaciecola chathamensis S18K6

Species: Glaciecola chathamensis

Genus: Glaciecola

Family: Alteromonadaceae

Order: Alteromonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|332307781|ref|YP_004435632.1| argininosuccinate lyase [Glaciecola sp. 4H-3-7+YE-5] gi|410644965|ref|ZP_11355434.1| argininosuccinate lyase [Glaciecola agarilytica NO2] gi|332175110|gb|AEE24364.1| argininosuccinate lyase [Glaciecola sp. 4H-3-7+YE-5] gi|410135475|dbj|GAC03833.1| argininosuccinate lyase [Glaciecola agarilytica NO2]

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN 176
           D  RKLHTGRSRND + TD RL+TR+H+D+++E +  +I  L  N
Sbjct: 98  DVARKLHTGRSRNDQVATDFRLWTREHVDLLVEDVEAVIASLVGN 142

Source: Glaciecola sp. 4H-3-7+YE-5

Species: Glaciecola sp. 4H-3-7+YE-5

Genus: Glaciecola

Family: Alteromonadaceae

Order: Alteromonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|410617444|ref|ZP_11328412.1| argininosuccinate lyase [Glaciecola polaris LMG 21857] gi|410163007|dbj|GAC32550.1| argininosuccinate lyase [Glaciecola polaris LMG 21857]

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN 176
           D  RKLHTGRSRND + TD RL+TR+H+++++E +  +I  L  N
Sbjct: 98  DVARKLHTGRSRNDQVATDFRLWTREHVELLVEDVQAVIGSLVGN 142

Source: Glaciecola polaris LMG 21857

Species: Glaciecola polaris

Genus: Glaciecola

Family: Alteromonadaceae

Order: Alteromonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|262370153|ref|ZP_06063480.1| argininosuccinate lyase [Acinetobacter johnsonii SH046] gi|262315192|gb|EEY96232.1| argininosuccinate lyase [Acinetobacter johnsonii SH046]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 29/38 (76%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELL 166
           R   TG+KLHTGRSRND + TD+RLY R  ID I+ELL
Sbjct: 109 RIGITGKKLHTGRSRNDQVATDIRLYVRDEIDAILELL 146

Source: Acinetobacter johnsonii SH046

Species: Acinetobacter johnsonii

Genus: Acinetobacter

Family: Moraxellaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|410624885|ref|ZP_11335674.1| argininosuccinate lyase [Glaciecola mesophila KMM 241] gi|410155412|dbj|GAC22443.1| argininosuccinate lyase [Glaciecola mesophila KMM 241]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTKN 176
           D  RKLHTGRSRND + TD RL+TR+H+++++E +  +I  L  N
Sbjct: 98  DVARKLHTGRSRNDQVATDFRLWTREHVELLVEDVEAVIASLVGN 142

Source: Glaciecola mesophila KMM 241

Species: Glaciecola mesophila

Genus: Glaciecola

Family: Alteromonadaceae

Order: Alteromonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|381196777|ref|ZP_09904118.1| argininosuccinate lyase [Acinetobacter lwoffii WJ10621]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 29/38 (76%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELL 166
           R   TG+KLHTGRSRND + TD+RLY R  ID I+ELL
Sbjct: 109 RIGITGKKLHTGRSRNDQVATDIRLYVRDEIDAILELL 146

Source: Acinetobacter lwoffii WJ10621

Species: Acinetobacter lwoffii

Genus: Acinetobacter

Family: Moraxellaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|407007319|gb|EKE23013.1| hypothetical protein ACD_6C00643G0004 [uncultured bacterium]

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 29/38 (76%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELL 166
           R   TG+KLHTGRSRND + TD+RLY R  ID I+ELL
Sbjct: 92  RIGITGKKLHTGRSRNDQVATDIRLYVRDEIDSILELL 129

Source: uncultured bacterium

Species: uncultured bacterium

Superkingdom: Bacteria

>gi|347818005|ref|ZP_08871439.1| argininosuccinate lyase [Verminephrobacter aporrectodeae subsp. tuberculatae At4]

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 107 KLESSALSEEMDSSSLSSGGQLRCC----DTGRKLHTGRSRNDMIVTDLRLYTRKHIDII 162
           ++ES A + ++D   L    + R      D G++LHTGRSRND + TDLRL+ R  ID+I
Sbjct: 89  EIESGAFAWKLDLEDLHLNIEARLTQLVGDAGKRLHTGRSRNDQVATDLRLWLRGEIDLI 148

Query: 163 IELL 166
           + LL
Sbjct: 149 VGLL 152

Source: Verminephrobacter aporrectodeae subsp. tuberculatae At4

Species: Verminephrobacter aporrectodeae

Genus: Verminephrobacter

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|262375169|ref|ZP_06068403.1| argininosuccinate lyase [Acinetobacter lwoffii SH145] gi|262310182|gb|EEY91311.1| argininosuccinate lyase [Acinetobacter lwoffii SH145]

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 29/38 (76%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELL 166
           R   TG+KLHTGRSRND + TD+RLY R  ID I+ELL
Sbjct: 109 RIGITGKKLHTGRSRNDQVATDIRLYVRDEIDSILELL 146

Source: Acinetobacter lwoffii SH145

Species: Acinetobacter lwoffii

Genus: Acinetobacter

Family: Moraxellaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
UNIPROTKB|P24058	468	ASL2 "Argininosuccinate lyase"	0.25	0.094	0.522	7.4e-06
UNIPROTKB|F1MTV7	473	ASL "Argininosuccinate lyase"	0.227	0.084	0.525	1.2e-05
UNIPROTKB|Q3SZJ0	473	ASL "Argininosuccinate lyase"	0.227	0.084	0.525	1.2e-05
UNIPROTKB|F1P247	446	ASL2 "Argininosuccinate lyase"	0.25	0.098	0.522	1.4e-05
UNIPROTKB|F1NHY4	464	ASL2 "Argininosuccinate lyase"	0.25	0.094	0.522	1.5e-05
UNIPROTKB|F1NI02	465	ASL2 "Argininosuccinate lyase"	0.25	0.094	0.522	1.5e-05
UNIPROTKB|P05083	466	ASL2 "Argininosuccinate lyase"	0.25	0.094	0.522	1.5e-05
UNIPROTKB|F1P238	481	ASL2 "Argininosuccinate lyase"	0.25	0.091	0.522	1.6e-05
TIGR_CMR|CJE_1009	460	CJE_1009 "argininosuccinate ly	0.232	0.089	0.488	1.9e-05
UNIPROTKB|P24057	466	ASL1 "Delta-1 crystallin" [Ana	0.25	0.094	0.5	2e-05

UNIPROTKB|P24058 ASL2 "Argininosuccinate lyase" [Anas platyrhynchos (taxid:8839)]

 Score = 113 (44.8 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct:   104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147

GO:0004056 "argininosuccinate lyase activity" evidence=IDA

GO:0005212 "structural constituent of eye lens" evidence=TAS

GO:0006526 "arginine biosynthetic process" evidence=TAS

UNIPROTKB|F1MTV7 ASL "Argininosuccinate lyase" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIK 171
             +T  KLHTGRSRND +VTDLRL+ R++  ++  LL  +I+
Sbjct:   102 ETAGKLHTGRSRNDQVVTDLRLWMRQNCSMLSALLCELIR 141

GO:0019676 "ammonia assimilation cycle" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0042450 "arginine biosynthetic process via ornithine" evidence=IEA

GO:0004056 "argininosuccinate lyase activity" evidence=IEA

UNIPROTKB|Q3SZJ0 ASL "Argininosuccinate lyase" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIK 171
             +T  KLHTGRSRND +VTDLRL+ R++  ++  LL  +I+
Sbjct:   102 ETAGKLHTGRSRNDQVVTDLRLWMRQNCSMLSALLCELIR 141

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0000050 "urea cycle" evidence=IEA

GO:0004056 "argininosuccinate lyase activity" evidence=IEA

GO:0042450 "arginine biosynthetic process via ornithine" evidence=IEA

UNIPROTKB|F1P247 ASL2 "Argininosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             D   KLHTGRSRND +VTDL+L  +  I +I   LL +IK L +
Sbjct:   101 DIAGKLHTGRSRNDQVVTDLKLLLKSSISVISTHLLQLIKTLVE 144

GO:0004056 "argininosuccinate lyase activity" evidence=IEA

GO:0042450 "arginine biosynthetic process via ornithine" evidence=IEA

UNIPROTKB|F1NHY4 ASL2 "Argininosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             D   KLHTGRSRND +VTDL+L  +  I +I   LL +IK L +
Sbjct:   100 DIAGKLHTGRSRNDQVVTDLKLLLKSSISVISTHLLQLIKTLVE 143

GO:0004056 "argininosuccinate lyase activity" evidence=IEA

GO:0042450 "arginine biosynthetic process via ornithine" evidence=IEA

UNIPROTKB|F1NI02 ASL2 "Argininosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             D   KLHTGRSRND +VTDL+L  +  I +I   LL +IK L +
Sbjct:   101 DIAGKLHTGRSRNDQVVTDLKLLLKSSISVISTHLLQLIKTLVE 144

GO:0004056 "argininosuccinate lyase activity" evidence=IEA

GO:0042450 "arginine biosynthetic process via ornithine" evidence=IEA

UNIPROTKB|P05083 ASL2 "Argininosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             D   KLHTGRSRND +VTDL+L  +  I +I   LL +IK L +
Sbjct:   102 DIAGKLHTGRSRNDQVVTDLKLLLKSSISVISTHLLQLIKTLVE 145

GO:0042450 "arginine biosynthetic process via ornithine" evidence=IEA

GO:0005212 "structural constituent of eye lens" evidence=IEA

GO:0004056 "argininosuccinate lyase activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0006525 "arginine metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1P238 ASL2 "Argininosuccinate lyase" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             D   KLHTGRSRND +VTDL+L  +  I +I   LL +IK L +
Sbjct:   117 DIAGKLHTGRSRNDQVVTDLKLLLKSSISVISTHLLQLIKTLVE 160

GO:0004056 "argininosuccinate lyase activity" evidence=IEA

GO:0042450 "arginine biosynthetic process via ornithine" evidence=IEA

TIGR_CMR|CJE_1009 CJE_1009 "argininosuccinate lyase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 109 (43.4 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRK-HIDIII---ELLLTMIKH 172
             + G +LHT RSRND + TD +L+ +K HI++I    EL+ TM+KH
Sbjct:   100 EIGGRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLKH 144

GO:0004056 "argininosuccinate lyase activity" evidence=ISS

GO:0006526 "arginine biosynthetic process" evidence=ISS

UNIPROTKB|P24057 ASL1 "Delta-1 crystallin" [Anas platyrhynchos (taxid:8839)]

 Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query:   132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             D   KLHTGRSRN+ +VTDL+L+ +  + II   LL +IK L +
Sbjct:   102 DIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 145

GO:0005212 "structural constituent of eye lens" evidence=TAS

GO:0004056 "argininosuccinate lyase activity" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
cd01359	435	cd01359, Argininosuccinate_lyase, Argininosuccinat	2e-15
PRK00855	459	PRK00855, PRK00855, argininosuccinate lyase; Provi	3e-15
COG0165	459	COG0165, ArgH, Argininosuccinate lyase [Amino acid	3e-13
TIGR00838	455	TIGR00838, argH, argininosuccinate lyase	3e-13
PRK04833	455	PRK04833, PRK04833, argininosuccinate lyase; Provi	1e-10
cd01334	325	cd01334, Lyase_I, Lyase class I family; a group of	1e-09
PLN02646	474	PLN02646, PLN02646, argininosuccinate lyase	3e-08
PRK12308	614	PRK12308, PRK12308, bifunctional argininosuccinate	4e-07
cd01594	231	cd01594, Lyase_I_like, Lyase class I_like superfam	3e-04
pfam00206	312	pfam00206, Lyase_1, Lyase	5e-04

>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL)

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 25/45 (55%), Positives = 31/45 (68%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           R  D G KLHTGRSRND + TDLRLY R  +  ++ELLL + + L
Sbjct: 73  RIGDVGGKLHTGRSRNDQVATDLRLYLRDALLELLELLLDLQRAL 117

This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In humans, mutations in ASAL result in the autosomal recessive disorder argininosuccinic aciduria. Length = 435

>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional

 Score = 71.7 bits (177), Expect = 3e-15
 Identities = 28/42 (66%), Positives = 30/42 (71%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           D G KLHTGRSRND + TDLRLY R  ID I ELLL + K L
Sbjct: 100 DVGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKAL 141

Length = 459

>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism]

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 23/47 (48%), Positives = 30/47 (63%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           R  D G KLHTGRSRND + TDLRL+ R  +  ++EL+  + K L  
Sbjct: 96  RIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLD 142

Length = 459

>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 24/44 (54%), Positives = 29/44 (65%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D G KLHTGRSRND + TDLRLY R H+  + E LL +   L +
Sbjct: 96  DLGGKLHTGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIE 139

This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens [Amino acid biosynthesis, Glutamate family]. Length = 455

>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           D G+KLHTGRSRND + TDL+L+ +  +  ++  L  +   L
Sbjct: 98  DLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQSAL 139

Length = 455

>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             G  +HTGRS ND++ T LRL  R  +DI++  L  +I  L  
Sbjct: 69  LNGGYVHTGRSSNDIVDTALRLALRDALDILLPALKALIDALAA 112

The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Length = 325

>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMI 170
           +  +KLHT RSRND + TD RL+ R  ID+I + + T+ 
Sbjct: 112 EPAKKLHTARSRNDQVATDTRLWCRDAIDVIRKRIKTLQ 150

Length = 474

>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELL 166
           D G+KLHTGRSRND + TDL+L+ R+    ++  L
Sbjct: 98  DLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLAL 132

Length = 614

>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 138 HTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           H GRS ND+  T LRL  R  +D ++ LL  +I  L
Sbjct: 38  HKGRSSNDIGTTALRLALRDALDDLLPLLKALIDAL 73

Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respectively. Length = 231

>gnl|CDD|215787 pfam00206, Lyase_1, Lyase

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 16/90 (17%)

Query: 79  AGNKVNLDDVKIHDSTP----QTSTIHHNNIHKLESSALSEEMDSSSLSSGGQLRCCDTG 134
                  ++ K  D+ P    Q  +    N++  E   + E +        GQL      
Sbjct: 55  KALDEVAEEGKADDAFPLKVIQEGSGTAVNMNLNEV--IGELL--------GQLV--HPN 102

Query: 135 RKLHTGRSRNDMIVTDLRLYTRKHIDIIIE 164
            K+HTG+S ND + T LRL  +  +  ++ 
Sbjct: 103 DKVHTGQSSNDQVPTALRLALKLALSEVLL 132

Length = 312

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
COG0165	459	ArgH Argininosuccinate lyase [Amino acid transport	100.0
KOG1316|consensus	464		99.98
PRK06389	434	argininosuccinate lyase; Provisional	99.97
PLN02646	474	argininosuccinate lyase	99.93
TIGR00838	455	argH argininosuccinate lyase. This model describes	99.88
PRK00855	459	argininosuccinate lyase; Provisional	99.86
PRK04833	455	argininosuccinate lyase; Provisional	99.85
PRK06705	502	argininosuccinate lyase; Provisional	99.84
PRK12308	614	bifunctional argininosuccinate lyase/N-acetylgluta	99.83
PRK02186	887	argininosuccinate lyase; Provisional	99.7
PRK14515	479	aspartate ammonia-lyase; Provisional	99.66
cd01359	435	Argininosuccinate_lyase Argininosuccinate lyase (a	99.63
PRK12425	464	fumarate hydratase; Provisional	99.56
cd01334	325	Lyase_I Lyase class I family; a group of proteins	99.55
PF00206	312	Lyase_1: Lyase; InterPro: IPR022761 This entry rep	99.54
cd01595	381	Adenylsuccinate_lyase_like Adenylsuccinate lyase (	99.52
cd01357	450	Aspartase Aspartase. This subgroup contains Escher	99.52
PRK00485	464	fumC fumarate hydratase; Reviewed	99.5
PRK12273	472	aspA aspartate ammonia-lyase; Provisional	99.48
TIGR02426	338	protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom	99.47
cd01597	437	pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo	99.46
cd01360	387	Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL	99.44
PLN00134	458	fumarate hydratase; Provisional	99.42
cd01596	450	Aspartase_like aspartase (L-aspartate ammonia-lyas	99.42
PRK13353	473	aspartate ammonia-lyase; Provisional	99.4
PRK06390	451	adenylosuccinate lyase; Provisional	99.39
TIGR00928	435	purB adenylosuccinate lyase. This family consists	99.38
PRK08540	449	adenylosuccinate lyase; Reviewed	99.36
TIGR00839	468	aspA aspartate ammonia-lyase. Fumarate hydratase s	99.35
cd01362	455	Fumarase_classII Class II fumarases. This subgroup	99.33
PRK08470	442	adenylosuccinate lyase; Provisional	99.22
TIGR00979	458	fumC_II fumarate hydratase, class II. Putative fum	99.21
PRK09285	456	adenylosuccinate lyase; Provisional	99.15
PRK05975	351	3-carboxy-cis,cis-muconate cycloisomerase; Provisi	98.96
PRK07492	435	adenylosuccinate lyase; Provisional	98.9
PRK07380	431	adenylosuccinate lyase; Provisional	98.79
cd01598	425	PurB PurB_like adenylosuccinases (adenylsuccinate	98.69
cd03302	436	Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL	98.53
PLN02848	458	adenylosuccinate lyase	98.51
PRK09053	452	3-carboxy-cis,cis-muconate cycloisomerase; Provisi	98.34
cd01594	231	Lyase_I_like Lyase class I_like superfamily: conta	98.08
COG0015	438	PurB Adenylosuccinate lyase [Nucleotide transport	92.92

>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-34  Score=264.86  Aligned_cols=120  Identities=24%  Similarity=0.279  Sum_probs=111.0

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhc---C-CC---
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESS---A-LS---  114 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~---g-~~---  114 (176)
                      -||||++++++++..|++|++||+++|++||.+++||+++      |   ++++|+++     |.++.++   | |.   
T Consensus         6 wggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~-----L~~l~~e~~~g~~~~~~   80 (459)
T COG0165           6 WGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEG-----LEELLEEIRAGKFELDP   80 (459)
T ss_pred             CCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHHHHhcCCccCCC
Confidence            4899999999999999999999999999999999999993      4   78999999     6666554   4 43   


Q ss_pred             -CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 -EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 -~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       +||||++||++|++++|+.||||||||||||||||++|||+|+++.++.+.+..|+++|++
T Consensus        81 ~~EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~  142 (459)
T COG0165          81 DDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLD  142 (459)
T ss_pred             ccccHHHHHHHHHHHHHhhhhchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5999999999999999999999999999999999999999999999999999999999975

>KOG1316|consensus

Probab=99.98  E-value=1.8e-33  Score=252.06  Aligned_cols=125  Identities=26%  Similarity=0.259  Sum_probs=112.6

Q ss_pred             hccccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-CC----
Q psy3415          49 KNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-LS----  114 (176)
Q Consensus        49 ~~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-~~----  114 (176)
                      +--||||+|+++|.|.+||.||+||+++|..|+.+++||+.      +|   +.++|+++|.+  ++.-|+.| |.    
T Consensus         7 KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~--i~~ew~~~kf~~~p~   84 (464)
T KOG1316|consen    7 KLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEK--IRREWAAGKFKLNPN   84 (464)
T ss_pred             hhhccccCCCCCHHHHHhhccCccchHHHHhhhhhhHHHHHHHHHcCCCcHHHHHHHHHHHHH--HHHHHhcCceEeCCC
Confidence            44699999999999999999999999999999999999999      44   67889999544  44445556 43    


Q ss_pred             CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 ~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      .||||+++|++|.|.+|+.||||||||||||||+||+|||+|+.+.++...+..|++++++
T Consensus        85 dEDvHtanErrL~eliG~~agKlHTgRSRNDQV~TDlRLw~r~~i~~~~~~l~~L~~~~v~  145 (464)
T KOG1316|consen   85 DEDVHTANERRLTELIGEIAGKLHTGRSRNDQVVTDLRLWLRDAIDTILGLLWNLIRVLVD  145 (464)
T ss_pred             chhhhhHHHHHHHHHHhhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3999999999999999999999999999999999999999999999999999999999875

>PRK06389 argininosuccinate lyase; Provisional

Probab=99.97  E-value=5.2e-31  Score=240.55  Aligned_cols=120  Identities=16%  Similarity=0.076  Sum_probs=110.2

Q ss_pred             cccccCCCCC-CCcccc-CCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcCCC----C
Q psy3415          51 IDELLGNEVP-PPAAPV-TPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSALS----E  115 (176)
Q Consensus        51 i~~Rl~g~~~-~~v~~f-~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g~~----~  115 (176)
                      -+|||+++++ +.+..| ++|+.||++++++|+.+++||+++      |   ++++|+++     |.++.+.+|.    .
T Consensus         4 w~gr~~~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~gii~~~e~~~i~~~-----L~~i~~~~~~~~~~~   78 (434)
T PRK06389          4 WSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINA-----LIDIYKNGIEIDLDL   78 (434)
T ss_pred             cccccCCCCchHHHHHHHCCCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCCCcCCCCC
Confidence            4789999998 668899 999999999999999999999994      3   68889999     7788775543    4


Q ss_pred             chhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      ||+|++||++|++++|++||||||||||||||+|++|||+|+++.++.+.+.+++++|++
T Consensus        79 EDvh~~iE~~L~~~~G~~gg~lhtgRSRNDqvat~~RL~~r~~~~~~~~~l~~l~~~l~~  138 (434)
T PRK06389         79 EDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHADLNLFIIDKIIEIEKILYEIIKVIPG  138 (434)
T ss_pred             CchHHHHHHHHHHHhchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999874

>PLN02646 argininosuccinate lyase

Probab=99.93  E-value=1.7e-26  Score=212.11  Aligned_cols=121  Identities=21%  Similarity=0.207  Sum_probs=110.0

Q ss_pred             ccccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhc---C-CC--
Q psy3415          50 NIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESS---A-LS--  114 (176)
Q Consensus        50 ~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~---g-~~--  114 (176)
                      -.+|||++++++.+..|++|+.||+++|++||.+++||+++      |   ++++|+++     |.++.+.   | |+  
T Consensus        18 ~w~~r~~~~~~~~~~~~~~s~~~d~~l~~~di~~~~Aha~~L~~~Gii~~~~a~~I~~a-----l~~i~~~~~~~~f~~~   92 (474)
T PLN02646         18 LWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQGIITDEDRDSILDG-----LDEIEKEIEAGKFEWR   92 (474)
T ss_pred             hhcCCCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCCcCC
Confidence            35789999999999999999999999999999999999993      4   67889998     7777543   2 43  


Q ss_pred             --CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 --EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 --~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                        .||+|+++|++|++++|+.||++|+||||||||+|++|||+|+.+..+...|..|+++|++
T Consensus        93 ~~~ed~h~~iE~~L~e~~G~~g~~lH~grSrND~v~Ta~~L~lr~~l~~l~~~L~~L~~~L~~  155 (474)
T PLN02646         93 PDREDVHMNNEARLTELIGEPAKKLHTARSRNDQVATDTRLWCRDAIDVIRKRIKTLQVALVE  155 (474)
T ss_pred             CCCCchHHHHHHHHHHHhchhhCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3899999999999999999999999999999999999999999999999999999999874

>TIGR00838 argH argininosuccinate lyase

Probab=99.88  E-value=5.6e-23  Score=187.01  Aligned_cols=120  Identities=27%  Similarity=0.313  Sum_probs=108.6

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC----CC---
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA----LS---  114 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g----~~---  114 (176)
                      .+|||++++++.+..|++|+.+|++++.+++.+++||++.      |   ++++|+++     |.++.+.+    |+   
T Consensus         2 ~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~a-----l~~i~~~~~~~~~~~~~   76 (455)
T TIGR00838         2 WGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEG-----LNELKEEGREGPFILDP   76 (455)
T ss_pred             CCccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCcCCCC
Confidence            4789999999999999999999999999999999999993      3   67788888     77776533    43   


Q ss_pred             -CchhHHHHHHHHHHHhc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 -EEMDSSSLSSGGQLRCC-DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 -~EDIH~aiE~~Lie~iG-~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       .||+|++||++|++++| +.||++|+||||||++.|++||++|+.+..+...|..|+++|++
T Consensus        77 ~~~d~~~~ie~~l~e~~g~~~g~~iH~g~SrnD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~  139 (455)
T TIGR00838        77 DDEDIHMAIERELIDRVGEDLGGKLHTGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIE  139 (455)
T ss_pred             CcCcHHHHHHHHHHHHhCCCccCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             39999999999999999 78999999999999999999999999999999999999999874

This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.

>PRK00855 argininosuccinate lyase; Provisional

Probab=99.86  E-value=4.3e-22  Score=181.60  Aligned_cols=120  Identities=28%  Similarity=0.294  Sum_probs=109.1

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC----CC---
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA----LS---  114 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g----~~---  114 (176)
                      .|+||++++.+.+..|+.|+.+|++++.+++.+++||++.      |   ++++|+++     |.++.+.+    |+   
T Consensus         7 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~Aha~~l~~~G~l~~~~a~~i~~a-----l~~i~~~~~~~~~~~~~   81 (459)
T PRK00855          7 WGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILAG-----LDEILEEIEAGKFEFSP   81 (459)
T ss_pred             cccCCCcchHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhcccCCcccCC
Confidence            4789999999999999999999999999999999999993      4   67888888     77775442    43   


Q ss_pred             -CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 -EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 -~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       .||+|++||++|++++|+.||++|+||||||++.|++||++|+.+..+...|..++++|.+
T Consensus        82 ~~~d~~~~ie~~l~~~~g~~g~~iH~g~SrnD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~  143 (459)
T PRK00855         82 ELEDIHMAIEARLTERIGDVGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKALLD  143 (459)
T ss_pred             CCCcHHHHHHHHHHHHhccccCcccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4999999999999999988999999999999999999999999999999999999999874

>PRK04833 argininosuccinate lyase; Provisional

Probab=99.85  E-value=5.6e-22  Score=181.09  Aligned_cols=121  Identities=20%  Similarity=0.184  Sum_probs=107.7

Q ss_pred             ccccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-------C
Q psy3415          50 NIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-------L  113 (176)
Q Consensus        50 ~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-------~  113 (176)
                      -+++||++++++.+..|++|+.+|++++++++.+++||++      +|   ++++|+++     |.++.+.+       +
T Consensus         3 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~a-----l~~i~~~~~~~~~~~~   77 (455)
T PRK04833          3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEA-----LNELLEEVRANPQQIL   77 (455)
T ss_pred             CcccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhhhcCCcccC
Confidence            3678999988888999999999999999999999999999      34   67888888     66654332       2


Q ss_pred             C--CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         114 S--EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       114 ~--~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +  .||+|++||++|++++|+.|||+|+||||||+++|++||++|+.+..+...|..++++|++
T Consensus        78 ~~~~edv~~~ie~~L~~~~g~~g~~lH~grSrnD~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~  141 (455)
T PRK04833         78 ASDAEDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQSALVE  141 (455)
T ss_pred             CCCCchHHHHHHHHHHHHhccccCcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  3899999999999999999999999999999999999999999999999999999999875

>PRK06705 argininosuccinate lyase; Provisional

Probab=99.84  E-value=4.1e-21  Score=177.68  Aligned_cols=121  Identities=17%  Similarity=0.084  Sum_probs=104.7

Q ss_pred             hccccccCCCCCCCccccCCCcccchhhhhhhhh-hhhhhHh------hh---cccccccccchhhhhhhhhcC---CC-
Q psy3415          49 KNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNK-VNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA---LS-  114 (176)
Q Consensus        49 ~~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~-v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g---~~-  114 (176)
                      ...|+||++++.+.+. |++|.+||.+.+..++. +++||++      ||   ++++|.++     |.++.+.+   +. 
T Consensus        10 ~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~a-----l~~~~~~~~~~l~~   83 (502)
T PRK06705         10 KSEGADFPGKTYVDCV-LQHVFNFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHA-----LKKVEEIPEEQLLY   83 (502)
T ss_pred             HHhcccCCCCcchhHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHhhhcccCcccc
Confidence            5678999999999999 99999999888776665 9999999      44   67888888     54442222   32 


Q ss_pred             ---CchhHHHHHHHHHHHhc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 ---EEMDSSSLSSGGQLRCC-DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 ---~EDIH~aiE~~Lie~iG-~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                         .||+|++||.++++.+| ++|||+|+|||||||++|++|||+|+.+..+...+..++++|++
T Consensus        84 ~~~~edv~~~ie~~l~~~~G~~~g~~lH~GrSrnD~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~  148 (502)
T PRK06705         84 TEQHEDLFFLVEHLISQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQ  148 (502)
T ss_pred             CCCCCchHHHHHHHHHHhcCchhhccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               49999999999999998 69999999999999999999999999999999999999999875

>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional

Probab=99.83  E-value=6.2e-21  Score=179.00  Aligned_cols=120  Identities=20%  Similarity=0.172  Sum_probs=106.8

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh---cC----CC
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES---SA----LS  114 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~---~g----~~  114 (176)
                      -++||++++++.+..|++|..+|++++.+|+.+++||+.      ||   ++++|.++     |..+..   .+    ++
T Consensus         4 ~~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~-----l~~~~~~~~~~~~~~~~   78 (614)
T PRK12308          4 WGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELA-----LNELKLEVMEDPEQILL   78 (614)
T ss_pred             cccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHHHhcCCCCCCC
Confidence            478999999999999999999999999999999999999      44   57778887     555421   22    22


Q ss_pred             --CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 --EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 --~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                        .||+|.++|++|++++|+.|||+|+||||||+++|++||++|+.+..+...|..++++|++
T Consensus        79 ~~~ed~h~~ie~~L~~~~g~~~~~iH~g~S~nD~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~  141 (614)
T PRK12308         79 SDAEDIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVN  141 (614)
T ss_pred             CccccHHHHHHHHHHHHhcccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4999999999999999999999999999999999999999999999999999999999874

>PRK02186 argininosuccinate lyase; Provisional

Probab=99.70  E-value=2.5e-17  Score=160.06  Aligned_cols=118  Identities=19%  Similarity=0.152  Sum_probs=93.5

Q ss_pred             cccCCCCCCCccccCC---CcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC---CC---
Q psy3415          53 ELLGNEVPPPAAPVTP---QSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA---LS---  114 (176)
Q Consensus        53 ~Rl~g~~~~~v~~f~s---Si~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g---~~---  114 (176)
                      ||..-+..|.+.+..+   -...|...+.+++.+++||++      ||   ++++|+++     |.++.+.+   +.   
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~-----l~~~~~~~~~~~~~~~  485 (887)
T PRK02186        411 GAARPGLPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDA-----HRRLRDAGFAPLLARP  485 (887)
T ss_pred             CccccCCChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHhHHhhCcCCC
Confidence            3444444445544333   233467779999999999999      34   67888888     54443222   32   


Q ss_pred             -CchhHHHHHHHHHHHhc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 -EEMDSSSLSSGGQLRCC-DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 -~EDIH~aiE~~Lie~iG-~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       .||+|+++|++|++++| ++|||+|+|||||||++|++||++|+.+..+...|..|+++|++
T Consensus       486 ~~~~~~~~~e~~L~~~~g~~~~~~lH~grSrnD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~  548 (887)
T PRK02186        486 APRGLYMLYEAYLIERLGEDVGGVLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALVF  548 (887)
T ss_pred             CCcchHHHHHHHHHHHhChhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             48999999999999999 79999999999999999999999999999999999999999975

>PRK14515 aspartate ammonia-lyase; Provisional

Probab=99.66  E-value=2.2e-16  Score=145.99  Aligned_cols=128  Identities=10%  Similarity=0.006  Sum_probs=102.8

Q ss_pred             hhhhhhhccccccCCCC-CCCcccc-CCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhc
Q psy3415          43 NFIGRHKNIDELLGNEV-PPPAAPV-TPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESS  111 (176)
Q Consensus        43 ~~~~~~~~i~~Rl~g~~-~~~v~~f-~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~  111 (176)
                      ..+|.+.-=.+++=|.. ...+..| .+++.+|++++++++.+++||+++      |   +++.|+++     +.++.+.
T Consensus        16 d~~g~~~~p~~~~~g~~t~ra~~~f~~~~~~~~~~~i~~~~~v~~A~a~~l~~~G~l~~~~~~~I~~a-----l~ei~~~   90 (479)
T PRK14515         16 DFLGEKEVPNYAYYGVQTMRAVENFPITGYKIHEGLIKAFAIVKKAAALANTDVGRLELNKGGAIAEA-----AQEILDG   90 (479)
T ss_pred             ccCCCCCCcccccchHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcC
Confidence            44555554445554544 3445688 788999999999999999999993      4   67888898     7777654


Q ss_pred             C----CC--C----ch------hHHHHHHHHHHHhcc-cccccc--------cccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy3415         112 A----LS--E----EM------DSSSLSSGGQLRCCD-TGRKLH--------TGRSRNDMIVTDLRLYTRKHIDIIIELL  166 (176)
Q Consensus       112 g----~~--~----ED------IH~aiE~~Lie~iG~-~gGkLH--------TGRSRNDqvAT~~RL~lRd~l~~l~~~L  166 (176)
                      +    |+  +    ++      +|+.||+++++++|+ .||++|        +||||||++.|++||++|+.+..+...|
T Consensus        91 ~~~~~f~~~~~~~g~~t~~nmnvnevie~~~~~~~G~~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l~~l~~~L  170 (479)
T PRK14515         91 KWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALEGLLQTM  170 (479)
T ss_pred             cccCCCCCCcccCCCcccccchHHHHHHHHHHHHhCcccCCccccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3    54  2    56      777899999999996 588555        9999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy3415         167 LTMIKHLTK  175 (176)
Q Consensus       167 ~~L~~aLl~  175 (176)
                      ..|+++|.+
T Consensus       171 ~~L~~~L~~  179 (479)
T PRK14515        171 GYMHDVFEL  179 (479)
T ss_pred             HHHHHHHHH
Confidence            999999864

>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL)

Probab=99.63  E-value=4.4e-16  Score=140.81  Aligned_cols=102  Identities=30%  Similarity=0.354  Sum_probs=89.8

Q ss_pred             CcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc----CCC----CchhHHHHHHHHHHHhc
Q psy3415          69 QSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS----ALS----EEMDSSSLSSGGQLRCC  131 (176)
Q Consensus        69 Si~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~----g~~----~EDIH~aiE~~Lie~iG  131 (176)
                      |+.+|+.++.+++.+++||++      +|   .++.|+++     +.++.+.    .|.    .+|+|+++|.+|++++|
T Consensus         1 ~~~~d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a-----l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g   75 (435)
T cd01359           1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAG-----LAKIRAEIEAGAFELDPEDEDIHMAIERRLIERIG   75 (435)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhcccCCccCCCCCCcHHHHHHHHHHHHHH
Confidence            578899999999999999999      44   67788888     6555332    233    49999999999999999


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       132 ~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +.||++|+||||||++.|++||++|+.+..+...+..++++|.+
T Consensus        76 ~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~  119 (435)
T cd01359          76 DVGGKLHTGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLD  119 (435)
T ss_pred             HHHhhhhccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999874

This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.

>PRK12425 fumarate hydratase; Provisional

Probab=99.56  E-value=5.2e-15  Score=136.18  Aligned_cols=100  Identities=8%  Similarity=0.087  Sum_probs=85.4

Q ss_pred             ccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC----CC--------CchhHHHH----HHH
Q psy3415          71 SDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA----LS--------EEMDSSSL----SSG  125 (176)
Q Consensus        71 ~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g----~~--------~EDIH~ai----E~~  125 (176)
                      .....+..+...+++||+++      |   +++.|+++     +.++.+.+    |+        .||+|+++    |++
T Consensus        37 ~~~~~~i~a~~~ik~Aha~~l~~~G~l~~~~~~~I~~a-----l~ei~~~~~~~~f~~~~~~~g~~ed~~mnvnevi~~~  111 (464)
T PRK12425         37 RMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQA-----ADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGR  111 (464)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCCCccCCCCCCcchHHHHHHHHHHHH
Confidence            34588899999999999993      4   67788888     77776543    44        38999999    778


Q ss_pred             HHHHhcc-cccc--------cccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy3415         126 GQLRCCD-TGRK--------LHTGRSRNDMIVTDLRLYTRKHI-DIIIELLLTMIKHLTK  175 (176)
Q Consensus       126 Lie~iG~-~gGk--------LHTGRSRNDqvAT~~RL~lRd~l-~~l~~~L~~L~~aLl~  175 (176)
                      +.+++|+ .||+        +|+||||||++.|++||++|+.+ ..+...|..|+++|.+
T Consensus       112 ~~e~~G~~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~  171 (464)
T PRK12425        112 ANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAE  171 (464)
T ss_pred             HHHHhCcccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888885 8889        99999999999999999999999 5999999999999864

>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions

Probab=99.55  E-value=8.7e-15  Score=127.59  Aligned_cols=94  Identities=24%  Similarity=0.310  Sum_probs=80.1

Q ss_pred             hhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC------CC--CchhHHHHHHHHHHHhccc-ccccc
Q psy3415          77 CYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA------LS--EEMDSSSLSSGGQLRCCDT-GRKLH  138 (176)
Q Consensus        77 ~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g------~~--~EDIH~aiE~~Lie~iG~~-gGkLH  138 (176)
                      +.+++.+++||++      +|   +++.|.++     +..+....      ..  .+|.|+++|+.|++++|+. ||++|
T Consensus         1 ~~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~~lH   75 (325)
T cd01334           1 IRADLQVEKAHAKALAELGLLPKEAAEAILAA-----LDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVH   75 (325)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhCccccCeeeCCCCccHHHHHHHHHHHHhccccCCCCc
Confidence            3567889999999      44   67778887     55554322      12  4999999999999999986 99999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         139 TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       139 TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +||||||++.|++||++|+.+..+...+.+++++|++
T Consensus        76 ~G~S~nDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~  112 (325)
T cd01334          76 TGRSSNDIVDTALRLALRDALDILLPALKALIDALAA  112 (325)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999874

The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.

>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F

Probab=99.54  E-value=1.3e-15  Score=132.36  Aligned_cols=118  Identities=19%  Similarity=0.141  Sum_probs=101.3

Q ss_pred             cccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-----C--C--
Q psy3415          53 ELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-----L--S--  114 (176)
Q Consensus        53 ~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-----~--~--  114 (176)
                      |||+.++++....|+.+..+|.++..+++.+..||+.      +|   .+++|.++     +.++..++     |  .  
T Consensus         1 Gr~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a-----~~~i~~~~~~~~~~~~~~~   75 (312)
T PF00206_consen    1 GRYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALAEAGIIPKEAADAIVKA-----LEEILEDGDLDDAFELDEI   75 (312)
T ss_dssp             EEEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHH-----HHHHHHHTCTHGHHHHCSC
T ss_pred             CCcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHHHhhcchHHHHHHHHHH-----HHHHHHhhccccccchhhh
Confidence            7888889988999999999999999999999999999      33   57888888     66665532     1  2  


Q ss_pred             CchhHHHHHHHHHHHhc-------ccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415         115 EEMDSSSLSSGGQLRCC-------DTGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK  175 (176)
Q Consensus       115 ~EDIH~aiE~~Lie~iG-------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~  175 (176)
                      .+++|..++..|.+.+|       +.++++|+||||||++.|+++|++|+.+.+ +...+..++++|.+
T Consensus        76 ~~~~~~~~~~~l~~~~~e~~~~~~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~  144 (312)
T PF00206_consen   76 EEDIGHAVEANLNEVLGELLGEPPEAGGWVHYGRTSNDIVDTALRLQLRDALLELLLERLKALIDALAE  144 (312)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHTHSSGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccchhHHHHHHHHHhhhhhhccccccccccCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            48999999999999998       789999999999999999999999999955 99999999999864

...

>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like

Probab=99.52  E-value=1.3e-14  Score=129.42  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=81.9

Q ss_pred             cchhhhhhhhhhhhhhHh------hh---cccccccccchh--hhhhhhhcC-CCCchhHHHHHHHHHHHhcc-cccccc
Q psy3415          72 DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHN--NIHKLESSA-LSEEMDSSSLSSGGQLRCCD-TGRKLH  138 (176)
Q Consensus        72 ~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~--~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~-~gGkLH  138 (176)
                      .|..++.+++.+++||++      +|   ++++|.+++...  ...++.+.. ...+|+ .++|++|++++|+ +||++|
T Consensus         6 s~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~~~~~~~~~~~~~~v-~~~e~~L~~~~g~~~~~~vH   84 (381)
T cd01595           6 SEENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAERIAEIEKETGHDV-IAFVYALAEKCGEDAGEYVH   84 (381)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCHHHHHHHHHHhCcCc-HHHHHHHHHHhhhHhhhHee
Confidence            478899999999999999      34   566777763220  011110000 114788 9999999999997 899999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         139 TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       139 TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +||||||++.|++||++|+.+..+...+..++++|.+
T Consensus        85 ~g~S~nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~  121 (381)
T cd01595          85 FGATSQDINDTALALQLRDALDIILPDLDALIDALAK  121 (381)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999864

This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t

>cd01357 Aspartase Aspartase

Probab=99.52  E-value=1.4e-14  Score=132.62  Aligned_cols=100  Identities=11%  Similarity=0.060  Sum_probs=82.3

Q ss_pred             ccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh----cCCC--------CchhHHHHH----HH
Q psy3415          71 SDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES----SALS--------EEMDSSSLS----SG  125 (176)
Q Consensus        71 ~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~----~g~~--------~EDIH~aiE----~~  125 (176)
                      .+|..++.+++.+++||+.      +|   ++++|.++     +.++.+    ..|+        .+|+|+++|    ..
T Consensus        35 ~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~a-----l~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~vi~~~  109 (450)
T cd01357          35 KIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKA-----CDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR  109 (450)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccCCCccchhhccccchhhhhHhHHHHHH
Confidence            4599999999999999999      34   67788888     655532    2233        168777766    66


Q ss_pred             HHHHhc-ccccc--------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         126 GQLRCC-DTGRK--------LHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       126 Lie~iG-~~gGk--------LHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +++++| +.|||        +|+||||||++.|++||++|+.+..+...|..++++|++
T Consensus       110 ~~e~~g~~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~  168 (450)
T cd01357         110 ALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRKLLDALAALQEAFQA  168 (450)
T ss_pred             HHHHhCccccCCcccCCcccccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677899 56876        899999999999999999999999999999999999875

This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.

>PRK00485 fumC fumarate hydratase; Reviewed

Probab=99.50  E-value=3.4e-14  Score=130.40  Aligned_cols=112  Identities=8%  Similarity=0.051  Sum_probs=89.2

Q ss_pred             CCCCccccCCC-cccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc---C-CC--------Cc
Q psy3415          59 VPPPAAPVTPQ-SSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS---A-LS--------EE  116 (176)
Q Consensus        59 ~~~~v~~f~sS-i~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~---g-~~--------~E  116 (176)
                      +++.+..|+.| +.+|+.++.+++.+++||+.      +|   .+++|.++     +.++.+.   + |+        .+
T Consensus        26 ~~~~~~~f~~s~~~~~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~a-----l~~i~~~~~~~~~~~~~~~~~~~~  100 (464)
T PRK00485         26 TQRSLENFPIGGERMPRELIRALALLKKAAARVNAELGLLDAEKADAIVAA-----ADEVIAGKHDDHFPLDVWQTGSGT  100 (464)
T ss_pred             hHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhCccccCCCcchhhccccc
Confidence            45557799766 99999999999999999999      44   67778887     6665332   2 32        37


Q ss_pred             hhHHHH----HHHHHHHhccc---ccccc------cccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy3415         117 MDSSSL----SSGGQLRCCDT---GRKLH------TGRSRNDMIVTDLRLYTRKHI-DIIIELLLTMIKHLTK  175 (176)
Q Consensus       117 DIH~ai----E~~Lie~iG~~---gGkLH------TGRSRNDqvAT~~RL~lRd~l-~~l~~~L~~L~~aLl~  175 (176)
                      |+|+++    +.++.+..|..   ++++|      +|||||||+.|++||++|+.+ ..+...|..|+++|++
T Consensus       101 ~~~~~i~~~i~~~~~~~~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~  173 (464)
T PRK00485        101 QSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAA  173 (464)
T ss_pred             cccccHHHHHHHHHHHhcCccccccCccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888    56555666743   44555      999999999999999999999 7999999999999874

>PRK12273 aspA aspartate ammonia-lyase; Provisional

Probab=99.48  E-value=8e-14  Score=128.44  Aligned_cols=98  Identities=10%  Similarity=0.047  Sum_probs=81.6

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc----CCC--------CchhHHHHHHH----HH
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS----ALS--------EEMDSSSLSSG----GQ  127 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~----g~~--------~EDIH~aiE~~----Li  127 (176)
                      =+.++.+++.+++||++      +|   ++++|.++     +.++.+.    .|+        .||.|+++|..    ++
T Consensus        44 ~~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~a-----l~~i~~~~~~~~~~~~~~~~~~~e~~~~~v~~~i~~~~~  118 (472)
T PRK12273         44 YPELIRALAMVKKAAALANKELGLLDEEKADAIVAA-----CDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRAL  118 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccCCcccchhhccccchhhhHHHHHHHHHHH
Confidence            37789999999999999      44   67788888     6665322    254        37999998888    56


Q ss_pred             HHhcc-cccc--cc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         128 LRCCD-TGRK--LH------TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       128 e~iG~-~gGk--LH------TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +++|+ .|++  +|      +|||||||++|++||++|+.+..+...|..|+++|++
T Consensus       119 e~~g~~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~  175 (472)
T PRK12273        119 ELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLRKLLDALEQLQEAFEA  175 (472)
T ss_pred             HHhCcccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78995 5556  99      9999999999999999999999999999999999875

>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase

Probab=99.47  E-value=5.6e-14  Score=124.18  Aligned_cols=102  Identities=16%  Similarity=0.133  Sum_probs=83.1

Q ss_pred             CcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhh----hcC--CC-CchhHHHHHHHHHHHhc-
Q psy3415          69 QSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLE----SSA--LS-EEMDSSSLSSGGQLRCC-  131 (176)
Q Consensus        69 Si~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~----~~g--~~-~EDIH~aiE~~Lie~iG-  131 (176)
                      ++-.|..++.+.+.+.+||++      +|   .++.|.++     +.++.    ..+  .. .++.+.++|+.|++++| 
T Consensus        13 ~i~sd~~~i~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~g~   87 (338)
T TIGR02426        13 ELFSDRAFLRAMLDFEAALARAQADAGLIPAEAAAAIEAA-----CAAAAPDLEALAHAAATAGNPVIPLVKALRKAVAG   87 (338)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh-----hccCCCCHHHHHhHHHhcCCcHHHHHHHHHHHhCc
Confidence            345689999999999999999      34   56677776     33321    111  11 35667899999999999 


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       132 ~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +.||++|+||||||++.|++||++|+.+..+...+..++++|.+
T Consensus        88 ~~g~~vH~G~S~nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~  131 (338)
T TIGR02426        88 EAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALAD  131 (338)
T ss_pred             cccCcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999874

Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.

>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like

Probab=99.46  E-value=9.4e-14  Score=125.91  Aligned_cols=97  Identities=21%  Similarity=0.233  Sum_probs=78.9

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC---CC---C--chhHHHHHHHHHHHhcc-cc
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA---LS---E--EMDSSSLSSGGQLRCCD-TG  134 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g---~~---~--EDIH~aiE~~Lie~iG~-~g  134 (176)
                      |...+.....+.+||++      +|   .++.|.++     +.++ +.+   +.   .  ++.+.++|.+|++++|+ .|
T Consensus        17 ~~~~i~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~a-----l~~~-~~~~~~~~~~~~~~~~~v~a~e~~l~e~~g~~~g   90 (437)
T cd01597          17 DENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAA-----ADVE-RLDLEALAEATARTGHPAIPLVKQLTAACGDAAG   90 (437)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh-----cccc-CCCHHHHHHHHHHhCCCcHHHHHHHHHHcCcccc
Confidence            77789999999999999      34   56667676     3222 111   11   2  34446999999999995 69


Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         135 RKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       135 GkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |++|+||||||+++|++||++|+.+..+...+..|+++|++
T Consensus        91 ~~lH~grSrnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~  131 (437)
T cd01597          91 EYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALAR  131 (437)
T ss_pred             CeeecCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999875

This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.

>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1

Probab=99.44  E-value=1.1e-13  Score=124.15  Aligned_cols=101  Identities=18%  Similarity=0.260  Sum_probs=80.0

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccccc
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTGRS  142 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTGRS  142 (176)
                      |.....+.+.++.||++      +|   ++++|.+++.. ...++.+.. -..+|+ .++|..|++++|+.||++|+|||
T Consensus        13 ~~~~~~~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~-~~~~~~~~~~~~~~dv-~~~e~~L~~~~g~~~~~lH~G~S   90 (387)
T cd01360          13 EENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKF-DVERVKEIEAETKHDV-IAFVTAIAEYCGEAGRYIHFGLT   90 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhc-CHHHHHHHHHHhCCCh-HHHHHHHHHHHHHhhhheeCCCC
Confidence            66778889999999999      34   56667666321 011111100 113677 79999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         143 RNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       143 RNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |||++.|++||++|+.+..+...+..++++|++
T Consensus        91 ~nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~  123 (387)
T cd01360          91 SSDVVDTALALQLREALDIILKDLKELLEVLKK  123 (387)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999874

This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).

>PLN00134 fumarate hydratase; Provisional

Probab=99.42  E-value=5e-13  Score=122.90  Aligned_cols=100  Identities=14%  Similarity=0.102  Sum_probs=82.9

Q ss_pred             ccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC----CC------------CchhHHHHHHH
Q psy3415          71 SDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA----LS------------EEMDSSSLSSG  125 (176)
Q Consensus        71 ~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g----~~------------~EDIH~aiE~~  125 (176)
                      .....+..+...+++||++.      |   +++.|+++     +.++.+.+    |+            .++||+.||.+
T Consensus        31 ~~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~a-----l~ei~~~~~~~~f~~~~~~~g~g~~~~~~v~evie~~  105 (458)
T PLN00134         31 RMPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQA-----ADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANR  105 (458)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCccccccccCCcccccCcHHHHHHHH
Confidence            34466777888899999993      4   67788888     77775542    32            37889999999


Q ss_pred             HHHHhcc-cccc--cc------cccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q psy3415         126 GQLRCCD-TGRK--LH------TGRSRNDMIVTDLRLYTRKH-IDIIIELLLTMIKHLTK  175 (176)
Q Consensus       126 Lie~iG~-~gGk--LH------TGRSRNDqvAT~~RL~lRd~-l~~l~~~L~~L~~aLl~  175 (176)
                      +++++|+ .||+  +|      +||||||++.|++||++|+. +..+...|..|+++|.+
T Consensus       106 l~e~~g~~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~  165 (458)
T PLN00134        106 AAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRA  165 (458)
T ss_pred             HHHHhCcccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999995 8988  88      99999999999999999966 77899999999999864

>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes

Probab=99.42  E-value=2.4e-13  Score=124.72  Aligned_cols=113  Identities=6%  Similarity=-0.030  Sum_probs=87.7

Q ss_pred             CCCCCccccCCC-cccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh---cC-CC--------C
Q psy3415          58 EVPPPAAPVTPQ-SSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES---SA-LS--------E  115 (176)
Q Consensus        58 ~~~~~v~~f~sS-i~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~---~g-~~--------~  115 (176)
                      .++..+..|+.| =.++..++.+++.++.||+.      +|   ++++|.++     +.++.+   .| |.        .
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~~-----l~~i~~~~~~~~~~~~~~~~~~~   95 (450)
T cd01596          21 QTQRALENFPISGERMPPELIRALALVKKAAALANAELGLLDEEKADAIVQA-----CDEVIAGKLDDQFPLDVWQTGSG   95 (450)
T ss_pred             hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCCcccHHhccCc
Confidence            445556677766 12568889999999999999      44   67778887     655532   12 32        3


Q ss_pred             chhHHHHHH----HHHHHhcc-cccc--------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         116 EMDSSSLSS----GGQLRCCD-TGRK--------LHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDIH~aiE~----~Lie~iG~-~gGk--------LHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +|+|+++|.    ++++++|+ .|+|        +|+|||||||++|++||++|+.+..+...+..++++|++
T Consensus        96 ~~~~~~v~~~i~~~~~~~~g~~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~~l~~l~~~l~~l~~~L~~  168 (450)
T cd01596          96 TSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDA  168 (450)
T ss_pred             ccccchHHHHHHHHHHHHhccccCCcccCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688888887    55577885 5776        669999999999999999999999999999999999874

This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.

>PRK13353 aspartate ammonia-lyase; Provisional

Probab=99.40  E-value=5.4e-13  Score=122.99  Aligned_cols=98  Identities=8%  Similarity=0.068  Sum_probs=80.8

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc---C-CC--C------chhHHH----HHHHHH
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS---A-LS--E------EMDSSS----LSSGGQ  127 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~---g-~~--~------EDIH~a----iE~~Li  127 (176)
                      ...++.+.+.+++||+.      +|   +++.|.++     +.++.+.   + |+  +      +|+|++    |+++|+
T Consensus        42 ~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~a-----l~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~vi~~~l~  116 (473)
T PRK13353         42 HPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQA-----CDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIANRAL  116 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccCCCCcchhhccccchhcchhhHHHHHHHH
Confidence            47789999999999999      34   57778887     6665322   2 43  1      586666    888999


Q ss_pred             HHhcc-ccc--------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         128 LRCCD-TGR--------KLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       128 e~iG~-~gG--------kLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +++|+ .|+        ++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus       117 e~~g~~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l~~l~~~L~~l~~~L~~  173 (473)
T PRK13353        117 ELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLEGLLAAMGALQDVFEE  173 (473)
T ss_pred             HHhCccccCCccCCcccCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99995 577        4999999999999999999999999999999999999874

>PRK06390 adenylosuccinate lyase; Provisional

Probab=99.39  E-value=4.8e-13  Score=122.26  Aligned_cols=102  Identities=19%  Similarity=0.169  Sum_probs=81.1

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhh--hhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccc
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNN--IHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTG  140 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~--L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTG  140 (176)
                      |...+.+++.++.||++      ||   +++.|.+++....  ...+.... -..+|+ .++|+.|++++|+.||++|+|
T Consensus        21 ~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~~~~~~~~~~~dv-~~~~~~L~~~~g~~~~~iH~G   99 (451)
T PRK06390         21 DENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLERVREIESEIKHDV-MALVEALSEQCSAGKNYVHFG   99 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCc-HHHHHHHHHHhhhhhhheecC
Confidence            77789999999999999      44   4566666632210  11111110 114699 899999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         141 RSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       141 RSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |||||++.|++||++|+.+..+...|..++++|.+
T Consensus       100 ~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~  134 (451)
T PRK06390        100 VTSNDINDTATALQIHDFVSIIKDDIKNLMETLIK  134 (451)
T ss_pred             ccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999864

>TIGR00928 purB adenylosuccinate lyase

Probab=99.38  E-value=4.4e-13  Score=121.67  Aligned_cols=115  Identities=18%  Similarity=0.301  Sum_probs=85.0

Q ss_pred             ccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchh---hhhhhhhcC-CCCchh
Q psy3415          52 DELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHN---NIHKLESSA-LSEEMD  118 (176)
Q Consensus        52 ~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~---~L~~l~~~g-~~~EDI  118 (176)
                      ++|++.   +.|..+.|    |...+.+.+.+++||++      +|   +++.|.++ .+.   .+..+.... ...+|+
T Consensus         2 ~~~y~~---~~~~~ifs----~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~-~~~~~~d~~~l~~~~~~~~~~v   73 (435)
T TIGR00928         2 DERYGT---PEMRAIWS----EENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAK-ANFTDVDLARIKEIEAVTRHDV   73 (435)
T ss_pred             CcccCc---HHHHHHhC----HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhh-CCCCccCHHHHHHHHHHHCcCh
Confidence            456652   45554432    56778899999999998      33   44555544 110   022221100 113677


Q ss_pred             HHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         119 SSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       119 H~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       .++|++|++++|++||++|+||||||++.|++||++|+.+..+...+..++++|.+
T Consensus        74 -~~~e~~l~~~~g~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~  129 (435)
T TIGR00928        74 -KAVVYALKEKCGAEGEFIHFGATSNDIVDTALALLLRDALEIILPKLKQLIDRLKD  129 (435)
T ss_pred             -HHHHHHHHHHhhhhhhheeecccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             89999999999999999999999999999999999999999999999999999874

This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.

>PRK08540 adenylosuccinate lyase; Reviewed

Probab=99.36  E-value=8.3e-13  Score=120.41  Aligned_cols=102  Identities=17%  Similarity=0.177  Sum_probs=79.3

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccch--hhhhhhhhcCCC-CchhHHHHHHHHHHHh-ccccccccc
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHH--NNIHKLESSALS-EEMDSSSLSSGGQLRC-CDTGRKLHT  139 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~--~~L~~l~~~g~~-~EDIH~aiE~~Lie~i-G~~gGkLHT  139 (176)
                      |...+...+.++.||+.      +|   .++.|.+++..  .....+....-. .+|+ +++|++|++++ |+.|||+|+
T Consensus        21 ~~~~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~~~~~~~~~~~~~v-~~~e~~L~~~~~~~~~~~vH~   99 (449)
T PRK08540         21 EENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERVKEIEAEIHHDI-MAVVKALSEVCEGDAGEYVHF   99 (449)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCc-HHHHHHHHHHhhhhhhcceec
Confidence            77778899999999999      34   56677776322  001111000001 3455 89999999999 579999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         140 GRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       140 GRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      ||||||++.|++||++|+.+..+...|..++++|.+
T Consensus       100 g~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~  135 (449)
T PRK08540        100 GATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLK  135 (449)
T ss_pred             CccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999864

>TIGR00839 aspA aspartate ammonia-lyase

Probab=99.35  E-value=2.1e-12  Score=119.27  Aligned_cols=100  Identities=9%  Similarity=-0.005  Sum_probs=82.8

Q ss_pred             ccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-----CC--------CchhHHHH----HH
Q psy3415          71 SDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-----LS--------EEMDSSSL----SS  124 (176)
Q Consensus        71 ~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-----~~--------~EDIH~ai----E~  124 (176)
                      .....++.+.+.++.||++      +|   +++.|.++     +.++.+.|     ++        .||+|+++    |.
T Consensus        37 ~~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~a-----l~~~~d~~~~~~~~~l~~~~~~~g~~~~~~v~~vie~  111 (468)
T TIGR00839        37 SDIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAA-----CDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIAN  111 (468)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhcccccccccccHHHccCccccccchHHHHHH
Confidence            3347789999999999999      44   67778787     55554412     21        15677775    99


Q ss_pred             HHHHHhc-ccccccc--------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         125 GGQLRCC-DTGRKLH--------TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       125 ~Lie~iG-~~gGkLH--------TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      .|++++| +.||++|        +||||||++.|++||++|+.+..+...|..++++|.+
T Consensus       112 ~l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~L~~  171 (468)
T TIGR00839       112 LALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQ  171 (468)
T ss_pred             HHHHHhCccccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 6899999        8999999999999999999999999999999999874

Fumarate hydratase scores as high as 570 bits against this model.

>cd01362 Fumarase_classII Class II fumarases

Probab=99.33  E-value=3.3e-12  Score=117.29  Aligned_cols=108  Identities=7%  Similarity=0.022  Sum_probs=82.3

Q ss_pred             cccc-CCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc---C-CC--------CchhHH
Q psy3415          63 AAPV-TPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS---A-LS--------EEMDSS  120 (176)
Q Consensus        63 v~~f-~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~---g-~~--------~EDIH~  120 (176)
                      +..| .++..++++.+...+.+.+||++      +|   +++.|.++     +.++.+.   + |+        .+|+|+
T Consensus        26 ~~~f~~~~~~~~~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~a-----l~~i~~~~~~~~~~~~~~~~~~~~~~~~  100 (455)
T cd01362          26 LENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQA-----ADEVIAGKLDDHFPLVVWQTGSGTQTNM  100 (455)
T ss_pred             HhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhcccccCCceehhhccccccccc
Confidence            4456 45556679999999999999999      44   57778787     6665332   2 32        267777


Q ss_pred             HHHHHHH----HHhc---------ccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415         121 SLSSGGQ----LRCC---------DTGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK  175 (176)
Q Consensus       121 aiE~~Li----e~iG---------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~  175 (176)
                      +++..+.    ++.|         ..++++|+||||||++.|++||++|+.+.+ +...+..++++|.+
T Consensus       101 ~v~~~i~~~~~~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~  169 (455)
T cd01362         101 NVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDA  169 (455)
T ss_pred             cHHHHHHHHHHHhcCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7554444    7778         234558999999999999999999999976 99999999998864

This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.

>PRK08470 adenylosuccinate lyase; Provisional

Probab=99.22  E-value=2e-11  Score=111.68  Aligned_cols=101  Identities=18%  Similarity=0.191  Sum_probs=79.9

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccccc
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTGRS  142 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTGRS  142 (176)
                      |...+...+.+++||+.      +|   .++.|.+++. ..+..+.+.. -..+|+ .++++.|++++|+.|+++|+|||
T Consensus        16 ~~~~~~~~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~-~d~~~~~~~~~~~~~dv-~~~v~~L~e~~g~~~~~vH~G~T   93 (442)
T PRK08470         16 MQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAK-FDIARIDEIEKTTKHDL-IAFLTSVSESLGEESRFVHYGMT   93 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcc-cchHHHHHHHHccCCCh-HHHHHHHHHHccccccceecCCC
Confidence            77788999999999999      44   4566666531 0011111111 225899 57779999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         143 RNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       143 RNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |||++.|+++|++|+.+..+...+..++++|.+
T Consensus        94 snDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~  126 (442)
T PRK08470         94 SSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKK  126 (442)
T ss_pred             hhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999864

>TIGR00979 fumC_II fumarate hydratase, class II

Probab=99.21  E-value=3e-11  Score=111.24  Aligned_cols=100  Identities=13%  Similarity=0.053  Sum_probs=79.6

Q ss_pred             ccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------Cc----hhHHHHHHH
Q psy3415          71 SDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------EE----MDSSSLSSG  125 (176)
Q Consensus        71 ~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~E----DIH~aiE~~  125 (176)
                      ..+.+++.+.+.+++||+.      +|   .++.|.++     +.++.+.+    |+        .+    ++|..|+.+
T Consensus        36 ~~~~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a-----~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~via~~  110 (458)
T TIGR00979        36 KMPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQA-----ADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIANR  110 (458)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccCCCceecccccccccccccHHHHHHHH
Confidence            3458899999999999999      44   57778887     65553322    22        13    456666669


Q ss_pred             HHHHhc-ccccc--ccc------ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy3415         126 GQLRCC-DTGRK--LHT------GRSRNDMIVTDLRLYTRKHI-DIIIELLLTMIKHLTK  175 (176)
Q Consensus       126 Lie~iG-~~gGk--LHT------GRSRNDqvAT~~RL~lRd~l-~~l~~~L~~L~~aLl~  175 (176)
                      |++++| +.||+  +|+      ||||||++.|++||++|+.+ ..+...|..++++|.+
T Consensus       111 l~e~~g~~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~  170 (458)
T TIGR00979       111 AIELLGGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDA  170 (458)
T ss_pred             HHHHcCcccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998 56656  997      99999999999999999999 5999999999999864

Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.

>PRK09285 adenylosuccinate lyase; Provisional

Probab=99.15  E-value=7.7e-11  Score=108.57  Aligned_cols=119  Identities=8%  Similarity=0.049  Sum_probs=83.8

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhhh-ccccc--ccccchhh---hhhhhhcCC---C------C
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIH-DSTPQ--TSTIHHNN---IHKLESSAL---S------E  115 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvII-~A~~I--l~al~~~~---L~~l~~~g~---~------~  115 (176)
                      +++||++.+++....|     .|...+.+++.+..||+... +...+  +..+....   |.+... .|   +      -
T Consensus        12 ~~~ry~~~~~e~~~~~-----s~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~-~~~~~d~~~i~~~   85 (456)
T PRK09285         12 LDGRYASKTAALRPIF-----SEFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVE-NFSEEDAARIKEI   85 (456)
T ss_pred             CccccCCCCHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH-hhCcccHHHHHHH
Confidence            3467776544333344     35888999999999999843 22111  11111011   222211 13   2      1


Q ss_pred             chh--H--HHHHHHHHHHhc------ccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415         116 EMD--S--SSLSSGGQLRCC------DTGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDI--H--~aiE~~Lie~iG------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~  175 (176)
                      |+.  |  .++|..|.+++|      +.|+++|+||||||++.|+++|++|+.+.. +...+..++++|.+
T Consensus        86 e~~~~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~  156 (456)
T PRK09285         86 ERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHFACTSEDINNLSHALMLKEAREEVLLPALRELIDALKE  156 (456)
T ss_pred             HHHhCCChHHHHHHHHHHhcccCcchhHHhHccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455  6  899999999997      578999999999999999999999999998 99999999999864

>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

Probab=98.96  E-value=9.7e-10  Score=98.09  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=76.9

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhh----hcC--C-CCchhHHHHHHHHHHHhc-cccc
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLE----SSA--L-SEEMDSSSLSSGGQLRCC-DTGR  135 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~----~~g--~-~~EDIH~aiE~~Lie~iG-~~gG  135 (176)
                      |...+...+.+.+|.+.      +|   .++.|.++     +.++.    +.+  . ..++.+..+++.|.+++| +.|+
T Consensus        26 ~~~~i~a~l~vE~A~a~a~~~~G~Ip~~~a~~I~~a-----~~~~~~d~~~~~~~~~~~g~~v~~~v~~l~~~~g~~~~~  100 (351)
T PRK05975         26 AEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAA-----CETFEPDLAALRHATARDGVVVPALVRQLRAAVGEEAAA  100 (351)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----hccCCCCHHHHhhHHHhcCCcHHHHHHHHHHHhCchhhC
Confidence            66778888888988887      45   45666666     32221    100  0 124556799999999998 5799


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         136 KLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       136 kLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      ++|+||||||++.|+++|++|+.+..+...+..++++|.+
T Consensus       101 ~vH~G~TsnDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~  140 (351)
T PRK05975        101 HVHFGATSQDVIDTSLMLRLKAASEILAARLGALIARLDA  140 (351)
T ss_pred             cccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999864

>PRK07492 adenylosuccinate lyase; Provisional

Probab=98.90  E-value=2.1e-09  Score=98.41  Aligned_cols=59  Identities=17%  Similarity=0.140  Sum_probs=55.6

Q ss_pred             chhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      -|| .++|+.|++++|+.|+++|+||||||++.|+++|++|+.+..+...|..++++|.+
T Consensus        71 h~v-~a~~~~L~~~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~  129 (435)
T PRK07492         71 HDV-IAFLTHLAEFVGPDARFVHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKK  129 (435)
T ss_pred             CCh-HHHHHHHHHHhhHhhhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456 79999999999999999999999999999999999999999999999999999864

>PRK07380 adenylosuccinate lyase; Provisional

Probab=98.79  E-value=9.6e-09  Score=94.06  Aligned_cols=59  Identities=22%  Similarity=0.295  Sum_probs=55.2

Q ss_pred             chhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      -|| .++.+.|.+++|+.|+++|+||||||++.|+++|++|+.+..+...|..++++|.+
T Consensus        68 h~v-~a~v~~l~~~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~  126 (431)
T PRK07380         68 HDV-IAFLTNVNEYVGDAGRYIHLGMTSSDVLDTGLALQLVASLDLLLEELEDLIQAIRY  126 (431)
T ss_pred             CCh-HHHHHHHHHHHHHhhccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567 67888999999999999999999999999999999999999999999999999864

>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL)

Probab=98.69  E-value=2.8e-08  Score=91.14  Aligned_cols=59  Identities=15%  Similarity=0.095  Sum_probs=52.5

Q ss_pred             chhHHHHHHHHHHHhc------ccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415         116 EMDSSSLSSGGQLRCC------DTGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDIH~aiE~~Lie~iG------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~  175 (176)
                      -|+ .++|+.|++++|      +.|+++|+||||||++.|++||++|+.+.+ +...+..++++|.+
T Consensus        69 hdv-~al~~~l~~~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~  134 (425)
T cd01598          69 HDV-KAVEYFLKEKFETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKK  134 (425)
T ss_pred             CCc-HHHHHHHHHHhcccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567 799999999997      467899999999999999999999999965 46999999998864

This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).

>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2

Probab=98.53  E-value=1.6e-07  Score=86.02  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=54.6

Q ss_pred             chhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      -|| .+++..|.+++|+.|+|+|+|||+||.+.|.++|++|+.+..+...|..++++|.+
T Consensus        70 hdv-~a~~~~l~~~~~~~~~~vH~G~TS~Di~dta~~L~lr~a~~~l~~~L~~l~~~L~~  128 (436)
T cd03302          70 HDV-MAHVHAFGLLCPAAAGIIHLGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAE  128 (436)
T ss_pred             cCc-hHHHHHHHHHhHhccCeeeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577 57777899999999999999999999999999999999999999999999999874

This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.

>PLN02848 adenylosuccinate lyase

Probab=98.51  E-value=2.1e-07  Score=86.10  Aligned_cols=59  Identities=10%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             chhHHHHHHHHHHHhc---c---cccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415         116 EMDSSSLSSGGQLRCC---D---TGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDIH~aiE~~Lie~iG---~---~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~  175 (176)
                      -|+ .++|..|.+++|   +   .++++|+||||||++.|+++|++|+.+.. +...|..++++|.+
T Consensus        94 hdv-~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~  159 (458)
T PLN02848         94 HDV-KAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISS  159 (458)
T ss_pred             CCc-HHHHHHHHHHhccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466 789999999996   2   56999999999999999999999999999 99999999999864

>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional

Probab=98.34  E-value=1e-06  Score=80.90  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=68.8

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccch--hhhhhhhhcC-CCCchhHHHHHHHHHHHhc----ccccc
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHH--NNIHKLESSA-LSEEMDSSSLSSGGQLRCC----DTGRK  136 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~--~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG----~~gGk  136 (176)
                      |...+.....+-+|=+.      +|   .++.|.++...  -.+..+.... -..-++ ..+.+.|.+.+|    +.+++
T Consensus        23 ~~~~i~a~l~ve~A~A~a~~~~G~ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~~~~~-~~lv~~l~~~~~~~~~~~~~~  101 (452)
T PRK09053         23 DRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDALAQAAALAGNLA-IPLVKQLTAQVAARDAEAARY  101 (452)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCCHHHHHHHHhhcCCch-HHHHHHHHHHhcccCcchhcc
Confidence            56666666666666555      34   34445444100  0011221111 111233 455667788886    57999


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         137 LHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       137 LHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +|+||||||++.|++||++|+.+..+...|..++++|.+
T Consensus       102 vH~G~SsnDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~  140 (452)
T PRK09053        102 VHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALAT  140 (452)
T ss_pred             ccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999874

>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions

Probab=98.08  E-value=7.6e-06  Score=66.65  Aligned_cols=54  Identities=33%  Similarity=0.396  Sum_probs=49.1

Q ss_pred             HHHHHHHHhcc-ccccc-----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         122 LSSGGQLRCCD-TGRKL-----HTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       122 iE~~Lie~iG~-~gGkL-----HTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +|..|++++|. .+|+.     |.||||||++.|++++++|+.+..+...+..+..++..
T Consensus        16 i~~~L~~~~~~~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~   75 (231)
T cd01594          16 VEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALAL   75 (231)
T ss_pred             HHHHHHHHHHHHhccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999996 56666     89999999999999999999999999999999988763

Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective

>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]

Probab=92.92  E-value=0.31  Score=45.75  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=54.9

Q ss_pred             chhHHHHHHHHHHHhc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         116 EMDSSSLSSGGQLRCC-DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDIH~aiE~~Lie~iG-~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      -|| .+++..|.+.+| +.++++|-|=..||.+-|..-|-+|+.+.-+...+..++++|.+
T Consensus        71 HdV-~a~v~~l~e~~~~~~~~~VH~GaTS~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~  130 (438)
T COG0015          71 HDV-KALVRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAE  130 (438)
T ss_pred             CCc-HHHHHHHHHhcCcccccceecccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578 899999999999 78899999999999999999999999999999999999988853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
1auw_A	468	H91n Delta 2 Crystallin From Duck Length = 468		2e-06
1tju_A	474	Crystal Structure Of T161s Duck Delta 2 Crystallin		2e-06
1tjv_A	474	Crystal Structure Of T161d Duck Delta 2 Crystallin		2e-06
1k7w_A	468	Crystal Structure Of S283a Duck Delta 2 Crystallin		2e-06
1hy1_A	468	Crystal Structure Of Wild Type Duck Delta 2 Crystal		2e-06
1u15_A	472	Crystal Structure Of A Duck-Delta-Crystallin-1 Doub		6e-06
1hy0_A	466	Crystal Structure Of Wild Type Duck Delta 1 Crystal		6e-06
1aos_A	464	Human Argininosuccinate Lyase Length = 464		9e-06
1k62_A	464	Crystal Structure Of The Human Argininosuccinate Ly		9e-06
1dcn_A	447	Inactive Mutant H162n Of Delta 2 Crystallin With Bo		1e-05
1xwo_A	465	Crystal Structrue Of Goose Delta Crystallin Length		6e-05
1i0a_A	466	Crystal Structure Of Wild Type Turkey Delta 1 Cryst		1e-04
2e9f_A	462	Crystal Structure Of T.th.hb8 Argininosuccinate Lya		1e-04
1tj7_A	457	Structure Determination And Refinement At 2.44 A Re		1e-04

>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck Length = 468

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147

>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant Length = 474

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147

>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant Length = 474

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147

>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant Length = 468

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147

>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin (Eye Lens Protein) Length = 468

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147

>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop Mutant (Dlm) Length = 472

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRN+ +VTDL+L+ +  + II   LL +IK L +
Sbjct: 102 DIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 145

>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin (Eye Lens Protein) Length = 466

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRN+ +VTDL+L+ +  + II   LL +IK L +
Sbjct: 102 DIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 145

>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 133 TGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLT 174
           T  KLHTGRSRND +VTDLRL+ R+    +  LL  +I+ + 
Sbjct: 103 TAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMV 144

>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase Q286r Mutant Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 133 TGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLT 174
           T  KLHTGRSRND +VTDLRL+ R+    +  LL  +I+ + 
Sbjct: 103 TAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMV 144

>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound Argininosuccinate Length = 447

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KL+TGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 86  DIAGKLNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 129

>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin Length = 465

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KL+TGRSRN+ +VTDL+L+ +  + +I   LL +IK L +
Sbjct: 101 DIAGKLNTGRSRNEQVVTDLKLFMKNSLSVISTHLLQLIKTLVE 144

>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin (Eye Lens Protein) Length = 466

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KL TGRSRN+ +VTDL+L  +  I +I   LL +IK L +
Sbjct: 102 DIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVE 145

>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase Complexed With L-arginine Length = 462

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 134 GRKLHTGRSRNDMIVTDLRLYTRKHID 160
           G KLHT RSRND + TDLRLY R  ID
Sbjct: 101 GGKLHTARSRNDQVATDLRLYLRGAID 127

>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A Resolution Of Argininosuccinate Lyase From E. Coli Length = 457

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
Query: 134 GRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELL 166
           G+KLHTGRSRND + TDL+L+ +   D + ELL
Sbjct: 100 GKKLHTGRSRNDQVATDLKLWCK---DTVSELL 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
1k7w_A	468	Delta 2 crystallin; eye lens protein, argininosucc	2e-14
1tj7_A	457	Argininosuccinate lyase; crystallin, E. coli, fuma	3e-14
2e9f_A	462	Argininosuccinate lyase; alpha helix bundle; HET:	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Length = 468

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147

>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Length = 457

 Score = 68.7 bits (169), Expect = 3e-14
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             G+KLHTGRSRND + TDL+L+ +  +  ++     +   L +
Sbjct: 98  QLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVE 141

>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Length = 462

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
             G KLHT RSRND + TDLRLY R  ID ++ LLL + + L +
Sbjct: 99  PPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVR 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 33/184 (17%), Positives = 50/184 (27%), Gaps = 82/184 (44%)

Query: 12  DPTEEVEEEEPLIDQLLASYRTQ--------SPVSRDQY--NFIGRH-KNIDELLGNEVP 60
           +   ++E E  L   ++  Y            P   DQY  + IG H KNI+        
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH------- 486

Query: 61  PPAAPVTPQSSDDEGDCYAGNKVNLD----DVKI-HDSTPQTSTIHHNNIHKLESSALSE 115
                       +    +    V LD    + KI HDST                     
Sbjct: 487 -----------PERMTLF--RMVFLDFRFLEQKIRHDSTA-------------------- 513

Query: 116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHI---DIIIELLLTMIKH 172
                            +G  L+T        +  L+ Y + +I   D   E L+  I  
Sbjct: 514 --------------WNASGSILNT--------LQQLKFY-KPYICDNDPKYERLVNAILD 550

Query: 173 LTKN 176
               
Sbjct: 551 FLPK 554

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
1tj7_A	457	Argininosuccinate lyase; crystallin, E. coli, fuma	99.83
2e9f_A	462	Argininosuccinate lyase; alpha helix bundle; HET:	99.81
1k7w_A	468	Delta 2 crystallin; eye lens protein, argininosucc	99.79
1fur_A	467	Fumarase C, FUMC; hydrolyase, carbon oxygen lyase,	99.58
3bhg_A	459	Adenylosuccinate lyase; structural G PSI-2, protei	99.57
1vdk_A	466	Fumarase C, fumarate hydratase class II; TCA cycle	99.56
2qga_B	465	Adenylosuccinate lyase; malaria, PV003765, SGC, st	99.55
1jsw_A	478	L-aspartase, L-aspartate ammonia-lyase; amino acid	99.54
3c8t_A	451	Fumarate lyase; structural genomics, PSI-2, protei	99.52
2ptr_A	462	Adenylosuccinate lyase; mutant-substrate complex;	99.52
1q5n_A	454	3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a	99.5
1dof_A	403	Adenylosuccinate lyase; purine biosynthesis; 2.10A	99.49
1yfm_A	488	Fumarase, YFUM; lyase, krebs cycle, active site wa	99.48
1c3c_A	429	Protein (adenylosuccinate lyase); purine biosynthe	99.48
2pfm_A	444	Adenylosuccinate lyase; PURB, purine biosynthesis,	99.42
1re5_A	450	3-carboxy-CIS,CIS-muconate cycloisomerase; homotet	99.39
4adm_A	495	Fumarase C, fumarate hydratase class II; lyase, tr	99.33
3r6q_A	468	Aspartase; aspartate ammonia lyase, lyase; 2.40A {	99.3
4eei_A	438	Adenylosuccinate lyase; structural genomics, niaid	99.27
2fel_A	359	3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio	99.24
1yis_A	478	Adenylosuccinate lyase; structural genomics, PSI,	99.19
3ocf_A	478	Fumarate lyase:delta crystallin; fumarase, brucell	99.15
3e04_A	490	Fumarase, fumarate hydratase; TCA cycle, structura	99.08
3gtd_A	482	Fumarase C, fumarate hydratase class II; structura	99.02
2j91_A	503	Adenylosuccinate lyase; disease mutation, adenylos	98.96
4hgv_A	495	Fumarase C, fumarate hydratase class II; nysgrc, P	98.22

>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1

Probab=99.83  E-value=1.5e-21  Score=176.68  Aligned_cols=124  Identities=16%  Similarity=0.132  Sum_probs=106.5

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcCC--C---Cc
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSAL--S---EE  116 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g~--~---~E  116 (176)
                      .||||++.+++.+..|++|++||+.++.+++.+++||+.      +|   .++.|.+++... ..++.+..|  +   .+
T Consensus         4 ~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i-~~~~~~~~~~~~~~~~~   82 (457)
T 1tj7_A            4 WGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVL-LEDVRARPQQILESDAE   82 (457)
T ss_dssp             CCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH-HHHHHHCGGGGGGSCCS
T ss_pred             cccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HhhHhcCCcCcCCCCCC
Confidence            689999999999999999999999999999999999999      34   567777773211 112222224  2   59


Q ss_pred             hhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         117 MDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       117 DIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |+|+++|++|++++|+.|+++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus        83 dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~  141 (457)
T 1tj7_A           83 DIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVE  141 (457)
T ss_dssp             SHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999864

>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}

Probab=99.81  E-value=1e-20  Score=171.44  Aligned_cols=120  Identities=26%  Similarity=0.271  Sum_probs=99.8

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh----cCCC---
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES----SALS---  114 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~----~g~~---  114 (176)
                      .|+||++.+++.+..|+.|+.+|+.++.+++.+++||+.      +|   .++.|.++     +.++..    ..|+   
T Consensus         6 ~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~f~~~~   80 (462)
T 2e9f_A            6 WGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKG-----LDRIEEEIEAGTFPWRE   80 (462)
T ss_dssp             --------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHHHHHHTCSCCCG
T ss_pred             cCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhHhcccCCcCC
Confidence            589999999999999999999999999999999999999      34   46777777     444432    2255   


Q ss_pred             -CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 -EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 -~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       .+|+|+++|+++++++|+.|+++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus        81 ~~~dv~~~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~  142 (462)
T 2e9f_A           81 ELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVR  142 (462)
T ss_dssp             GGCSHHHHHHHHHHHHHCTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3999999999999999999999999999999999999999999999999999999999864

>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A

Probab=99.79  E-value=3.9e-20  Score=167.85  Aligned_cols=121  Identities=25%  Similarity=0.281  Sum_probs=99.5

Q ss_pred             ccccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh----cCCC--
Q psy3415          50 NIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES----SALS--  114 (176)
Q Consensus        50 ~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~----~g~~--  114 (176)
                      -+|+||++.+++.+..|+.|+.+|+.++.+++.+.+||+.      +|   .++.|.++     +.++..    ..|+  
T Consensus        10 ~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~f~~~   84 (468)
T 1k7w_A           10 LWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG-----LEKISEEWSKGVFVVK   84 (468)
T ss_dssp             ---------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHHHHHHTCCCCC
T ss_pred             ccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhhhcccCccC
Confidence            3789999999989999999999999999999999999999      34   56778777     444432    2254  


Q ss_pred             --CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 --EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 --~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                        .+|+|+++|++|++++|+.|+++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus        85 ~~~~dv~m~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~  147 (468)
T 1k7w_A           85 QSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE  147 (468)
T ss_dssp             TTCCSHHHHHHHHHHHHHCGGGGGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4999999999999999999999999999999999999999999999999999999999864

>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A

Probab=99.58  E-value=2.6e-15  Score=136.41  Aligned_cols=113  Identities=11%  Similarity=0.074  Sum_probs=97.0

Q ss_pred             CCCCCccccCCCccc-chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------C
Q psy3415          58 EVPPPAAPVTPQSSD-DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------E  115 (176)
Q Consensus        58 ~~~~~v~~f~sSi~~-D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~  115 (176)
                      .+.+.+..|+.|..+ |+.++.+++.+.+||+.      +|   .+++|.++     +.++.+..    |+        .
T Consensus        25 ~t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~f~~~~~q~g~~   99 (467)
T 1fur_A           25 QTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQA-----ADEVLAGQHDDEFPLAIWQTGSG   99 (467)
T ss_dssp             HHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHTTTTGGGCCCBSSSCTTC
T ss_pred             hhHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccccccchhhhcccc
Confidence            556678899999999 99999999999999999      44   57788888     66665432    43        2


Q ss_pred             chhHHHHHHHH----HHHhc-ccccc--cc------cccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415         116 EMDSSSLSSGG----QLRCC-DTGRK--LH------TGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK  175 (176)
Q Consensus       116 EDIH~aiE~~L----ie~iG-~~gGk--LH------TGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~  175 (176)
                      +|+|+++|..+    ++++| +.|+|  +|      +||||||++.|++|||+|+.+.. +...|..|+++|.+
T Consensus       100 ~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~  173 (467)
T 1fur_A          100 TQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNE  173 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999966    89998 78888  99      99999999999999999999998 99999999999864

>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}

Probab=99.57  E-value=1.4e-15  Score=137.52  Aligned_cols=118  Identities=12%  Similarity=0.043  Sum_probs=91.6

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhhh-ccccc--c--------cccchhhhhhhhhcC-------
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIH-DSTPQ--T--------STIHHNNIHKLESSA-------  112 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvII-~A~~I--l--------~al~~~~L~~l~~~g-------  112 (176)
                      ++|||++++++....|+     |+.++.+++.+++||+..+ ....|  +        +.|.+. +.++....       
T Consensus        15 ~~gRy~~~~~~~~~~fs-----d~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~-~~~~~~~d~~~~~~~   88 (459)
T 3bhg_A           15 IDGRYVNKTRALSPYFS-----EFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDL-ISNFNESEAEKIKEF   88 (459)
T ss_dssp             TTTTTHHHHGGGTTTSS-----HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHH-HHTCCHHHHHHHHHH
T ss_pred             ccccccCChHHHHHHcC-----HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH-HHHhccccHHHHHHH
Confidence            78999998777777776     9999999999999999966 33233  1        111110 11111001       


Q ss_pred             --CCCchhHHHHHHHHHHHhc------ccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415         113 --LSEEMDSSSLSSGGQLRCC------DTGRKLHTGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK  175 (176)
Q Consensus       113 --~~~EDIH~aiE~~Lie~iG------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~  175 (176)
                        -..+|| +++|..|++++|      ++|+++|+||||||++.|++||++|+.+. .+...|..|+++|.+
T Consensus        89 e~~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~  159 (459)
T 3bhg_A           89 EKQTNHDV-KAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITL  159 (459)
T ss_dssp             TTTCSSHH-HHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHhcCCCh-HHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              124899 999999999998      36899999999999999999999999999 599999999999864

>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1

Probab=99.56  E-value=4.7e-15  Score=134.61  Aligned_cols=113  Identities=9%  Similarity=0.003  Sum_probs=96.4

Q ss_pred             CCCCCccccCCCcc-c--chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC-------
Q psy3415          58 EVPPPAAPVTPQSS-D--DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS-------  114 (176)
Q Consensus        58 ~~~~~v~~f~sSi~-~--D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~-------  114 (176)
                      .+.+.+..|+.|.. +  |+.++.+++.+.+||+.      +|   .+++|.++     +.++.+..    |+       
T Consensus        24 ~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~f~~~~~q~~   98 (466)
T 1vdk_A           24 QTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQA-----AEEVVQGKWDDHFPLVVFQTG   98 (466)
T ss_dssp             HHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHTTTTGGGCCCBSSSCT
T ss_pred             hhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhcccccCCCchhhhcc
Confidence            55677889999976 6  89999999999999999      44   57778887     66655432    44       


Q ss_pred             -CchhHHHHHHHH----HHHhc-ccc-cccc------cccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415         115 -EEMDSSSLSSGG----QLRCC-DTG-RKLH------TGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK  175 (176)
Q Consensus       115 -~EDIH~aiE~~L----ie~iG-~~g-GkLH------TGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~  175 (176)
                       .+|+|+++|..+    ++++| +.| +++|      +||||||++.|++|||+|+.+. .+...|..|+++|.+
T Consensus        99 ~~~~~~mn~~~via~~a~e~~g~~~g~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~  173 (466)
T 1vdk_A           99 SGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTA  173 (466)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHhCccccccccccccCcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             389999999977    89999 678 9999      9999999999999999999998 899999999999864

>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A

Probab=99.55  E-value=2.2e-15  Score=136.50  Aligned_cols=119  Identities=8%  Similarity=0.030  Sum_probs=89.9

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhhh-cccccccccchhhhhhhhh--cCC--------------
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIH-DSTPQTSTIHHNNIHKLES--SAL--------------  113 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvII-~A~~Il~al~~~~L~~l~~--~g~--------------  113 (176)
                      ++|||++++++....|     +|+.++.+++.+++||++.+ +...|+.......+..+.+  ..|              
T Consensus        11 ~~gRy~~~~~~~~~~~-----sd~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~l~~~~~~~~~~d~~~i~~~e~~   85 (465)
T 2qga_B           11 IDGRYKKACGELSAFF-----SEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEVLNQIATNITDSDIARVKAIEEE   85 (465)
T ss_dssp             TTTTTHHHHGGGGGTS-----SHHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             ccccccCCcHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHHhhc
Confidence            7899988766544444     59999999999999999965 2213332111100111110  011              


Q ss_pred             CCchhHHHHHHHHHHHhc--------ccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415         114 SEEMDSSSLSSGGQLRCC--------DTGRKLHTGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK  175 (176)
Q Consensus       114 ~~EDIH~aiE~~Lie~iG--------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~  175 (176)
                      ..+|| +++|+.|++++|        +.|+++|+||||||++.|++||++|+.+. .+...|..|+++|.+
T Consensus        86 ~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~  155 (465)
T 2qga_B           86 TNHDV-KAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKD  155 (465)
T ss_dssp             HSCHH-HHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cCCCh-HHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            14999 999999999998        67999999999999999999999999999 699999999999864

>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1

Probab=99.54  E-value=3e-15  Score=136.25  Aligned_cols=117  Identities=9%  Similarity=-0.009  Sum_probs=96.9

Q ss_pred             ccCCCCCCCccccCCCc-cc--chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhh-hc----CCC--
Q psy3415          54 LLGNEVPPPAAPVTPQS-SD--DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLE-SS----ALS--  114 (176)
Q Consensus        54 Rl~g~~~~~v~~f~sSi-~~--D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~-~~----g~~--  114 (176)
                      +.++.+.+.+..|+.|. .+  |+.++.+++.+++||+.      +|   .++.|.++     +.++. +.    +|+  
T Consensus        22 ~~g~~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~~f~v~   96 (478)
T 1jsw_A           22 YYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAA-----CDEVLNNGKCMDQFPVD   96 (478)
T ss_dssp             CCCHHHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHSTTTCSTTCCCCC
T ss_pred             ccchHHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhcchhccCCccc
Confidence            44445677888999986 66  89999999999999999      34   56778777     55555 32    244  


Q ss_pred             ------CchhHHHHHH----HHHHHhcc-ccc--ccc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 ------EEMDSSSLSS----GGQLRCCD-TGR--KLH------TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 ------~EDIH~aiE~----~Lie~iG~-~gG--kLH------TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                            .+|+|+++|.    ++++++|+ .|+  ++|      +||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus        97 ~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~l~~l~~~L~~L~~~L~~  176 (478)
T 1jsw_A           97 VYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFER  176 (478)
T ss_dssp             SSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccCcccccccHHHHHHHHHHHHcCccccccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  3899999996    88899995 676  899      8999999999999999999999999999999999864

>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}

Probab=99.52  E-value=5.6e-15  Score=133.22  Aligned_cols=116  Identities=13%  Similarity=0.113  Sum_probs=89.2

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccc--hhhhhhhhhcC--CCCch
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIH--HNNIHKLESSA--LSEEM  117 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~--~~~L~~l~~~g--~~~ED  117 (176)
                      ++|||+.   +.|..+    -.|..++.+++.+.+||+.      +|   .++.|.+++.  +-.+..+ +.+  -+.+|
T Consensus         8 ~~~ry~~---~~~~~~----~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~~~~~~~~~-~~~~~~~~~d   79 (451)
T 3c8t_A            8 YGRSFAD---DKMREL----FSAQSFISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERL-RDDTEIVGYP   79 (451)
T ss_dssp             SSCCCSC---HHHHHH----TSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCCHHHH-HHHHHHHSSS
T ss_pred             cccccCc---HHHHHH----cCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcCCCHHHH-HHHhhcCCCc
Confidence            5678877   344433    2389999999999999999      34   4566666621  0001111 111  12589


Q ss_pred             hHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         118 DSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       118 IH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      | .++|+.|++++|+.|+++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus        80 V-ia~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~  136 (451)
T 3c8t_A           80 I-LPLVEQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAA  136 (451)
T ss_dssp             H-HHHHHHHHHHHGGGGGGSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 69999999999999999999999999999999999999999999999999999864

>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A

Probab=99.52  E-value=7.1e-15  Score=133.04  Aligned_cols=118  Identities=10%  Similarity=0.072  Sum_probs=92.1

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhhh-ccccc----------ccccchhhhhhhhhcCC------
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIH-DSTPQ----------TSTIHHNNIHKLESSAL------  113 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvII-~A~~I----------l~al~~~~L~~l~~~g~------  113 (176)
                      ++|||++++++.+..|+     |+.++.+++.+.+||+..+ +...|          .++|.+. +.++....+      
T Consensus        12 ~~gRy~~~~~~~~~~fs-----d~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~-~~~i~~g~~~~~~~~   85 (462)
T 2ptr_A           12 VDGRYGDKVSALRGIFS-----EYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAI-VASFSEEDAARIKTI   85 (462)
T ss_dssp             TTTTTGGGSGGGGGTTS-----HHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHH-HHTCCHHHHHHHHHH
T ss_pred             ccccccCchHHHHHHCC-----cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH-HHHhccCCHHHHHhh
Confidence            78999998887777887     9999999999999999955 22122          1221110 222211111      


Q ss_pred             ---CCchhHHHHHHHHHHHhcc------cccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415         114 ---SEEMDSSSLSSGGQLRCCD------TGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK  175 (176)
Q Consensus       114 ---~~EDIH~aiE~~Lie~iG~------~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~  175 (176)
                         ..+|| +++|+.|++++|+      .++++|+||||||++.|++||++|+.+.+ +...|..|+++|.+
T Consensus        86 ~~~~~~dv-~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~  156 (462)
T 2ptr_A           86 ERTTNHDV-KAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKD  156 (462)
T ss_dssp             HHHHSCHH-HHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             ccccCCCH-HHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               14799 9999999999984      58999999999999999999999999996 99999999999864

>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1

Probab=99.50  E-value=9.6e-15  Score=131.64  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=89.2

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhh--------hcC-
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLE--------SSA-  112 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~--------~~g-  112 (176)
                      ++|||+.   +.|..+    -.|+.++.+++.+.+||+.      +|   .++.|.++     +.++.        +.+ 
T Consensus         8 ~~~ry~~---~~~~~~----~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~~~~~~   75 (454)
T 1q5n_A            8 YASLFYQ---RDVTEI----FSDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRA-----AKTAIDKIDFDALATAT   75 (454)
T ss_dssp             THHHHSC---HHHHHH----TSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HTTHHHHCCHHHHHHHH
T ss_pred             cccccCc---HHHHHH----cCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHhhhcCCHHHHHHHh
Confidence            5667776   344433    2389999999999999999      34   46667776     33221        111 


Q ss_pred             -CCCchhHHHHHHHHHHHh----cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         113 -LSEEMDSSSLSSGGQLRC----CDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       113 -~~~EDIH~aiE~~Lie~i----G~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       -+.+|| .++|+.|++++    |+.|+++|+||||||++.|++|||+|+.+..+...|..|+++|.+
T Consensus        76 ~~~~~dV-ia~~~~l~e~~g~~~g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~  142 (454)
T 1q5n_A           76 GLAGNIA-IPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALS  142 (454)
T ss_dssp             HHHSSSH-HHHHHHHHHHHHTTCTTGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCcH-HHHHHHHHHHhccccCCccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             125899 79999999999    889999999999999999999999999999999999999999864

>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1

Probab=99.49  E-value=2.9e-14  Score=127.06  Aligned_cols=113  Identities=17%  Similarity=0.033  Sum_probs=85.4

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC-CCCchhHH
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA-LSEEMDSS  120 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~  120 (176)
                      +++|++.   +.|..    +-.|+.++.+++.+.+||+..      |   .++.|.++  +-.+..+.... -+.+|| .
T Consensus         6 ~~~ry~~---~~~~~----i~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a--~~d~~~~~~~~~~~~~dV-i   75 (403)
T 1dof_A            6 FDWRYGS---EEIRR----LFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKA--SVSADEVYRLERETGHDI-L   75 (403)
T ss_dssp             GGTTSSC---HHHHT----TSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHC--CCCTTTC--------CHH-H
T ss_pred             cccccCc---HHHHH----HcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC--CCCHHHHHHHhhccCCcH-H
Confidence            6778877   34433    445999999999999999994      3   34444443  10011221111 135899 6


Q ss_pred             HHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         121 SLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       121 aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      ++|+.|++++|  |+++|+||||||++.|++||++|+.+..+...+..|+++|.+
T Consensus        76 a~~~~l~e~~G--g~~vH~g~SsnD~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~  128 (403)
T 1dof_A           76 SLVLLLEQKSG--CRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLAS  128 (403)
T ss_dssp             HHHHHHHHHHC--CSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--CCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999  899999999999999999999999999999999999999864

>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1

Probab=99.48  E-value=4.3e-14  Score=129.45  Aligned_cols=132  Identities=12%  Similarity=0.036  Sum_probs=99.3

Q ss_pred             chhhhhhhhhhcccccc-CCCCCCCccccCCCcc---cchhhhhhhhhhhhhhHh------hh---cccccccccchhhh
Q psy3415          39 RDQYNFIGRHKNIDELL-GNEVPPPAAPVTPQSS---DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNI  105 (176)
Q Consensus        39 ~~~~~~~~~~~~i~~Rl-~g~~~~~v~~f~sSi~---~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L  105 (176)
                      |-....+|.+.==...+ ++.+.+.+..|+.|..   +|+.++.+++.+.+||+.      +|   .++.|.++     +
T Consensus        29 r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a-----~  103 (488)
T 1yfm_A           29 RTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQA-----A  103 (488)
T ss_dssp             EEECSSSCCEEEESSCCCCHHHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----H
T ss_pred             CcccccCCCcCCCccchhchHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----H
Confidence            44445566555444433 3355777889999987   689999999999999999      34   57788888     6


Q ss_pred             hhhhhcC----CC--------CchhHHHHHHHH----HHHhc-ccc-cccc------cccchhHHHHHHHHHHHHHHHH-
Q psy3415         106 HKLESSA----LS--------EEMDSSSLSSGG----QLRCC-DTG-RKLH------TGRSRNDMIVTDLRLYTRKHID-  160 (176)
Q Consensus       106 ~~l~~~g----~~--------~EDIH~aiE~~L----ie~iG-~~g-GkLH------TGRSRNDqvAT~~RL~lRd~l~-  160 (176)
                      .++.+..    |+        .+|+|+++|..+    ++++| +.| +++|      +||||||++.|++||++|+.+. 
T Consensus       104 ~ei~~~~~~~~f~~~~~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l~~  183 (488)
T 1yfm_A          104 DEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQN  183 (488)
T ss_dssp             HHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccccCCCcchhhccccccccccHHHHHHHHHHHHhCccccCCccCcccCcCCCCChhhHHHHHHHHHHHHHHHH
Confidence            6665432    44        379999999866    58889 577 9999      9999999999999999999998 


Q ss_pred             HHHHHHHHHHHHHhc
Q psy3415         161 IIIELLLTMIKHLTK  175 (176)
Q Consensus       161 ~l~~~L~~L~~aLl~  175 (176)
                      .+...|..|+++|.+
T Consensus       184 ~l~~~L~~L~~~L~~  198 (488)
T 1yfm_A          184 ELIPELTNLKNALEA  198 (488)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999864

>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A

Probab=99.48  E-value=2.9e-14  Score=127.65  Aligned_cols=101  Identities=14%  Similarity=0.080  Sum_probs=81.8

Q ss_pred             chhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccccc
Q psy3415          73 DEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTGRS  142 (176)
Q Consensus        73 D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTGRS  142 (176)
                      |+.++.+++.+.+||+..      |   .++.|.+++ +-.+..+.+.. -+.+|| .++|+.|++++|+.|+++|+|||
T Consensus        15 d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~-~~d~~~i~~~~~~~~~dV-ia~~~~l~e~~g~~g~~vH~g~S   92 (429)
T 1c3c_A           15 EEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNA-KIDVELFKKIEEKTNHDV-VAFVEGIGSMIGEDSRFFHYGLT   92 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHC-CCCHHHHHHHHHHHCCHH-HHHHHHHHHHHGGGGGGTTTTCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC-CCCHHHHHHHHhccCCCh-HHHHHHHHHHcCcccccccCCCC
Confidence            899999999999999993      4   455565552 10012222211 125899 69999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         143 RNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       143 RNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |||++.|++||++|+.+..+...|..|+++|.+
T Consensus        93 snD~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~  125 (429)
T 1c3c_A           93 SSDVLDTANSLALVEAGKILLESLKEFCDVLWE  125 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999864

>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*

Probab=99.42  E-value=8.6e-14  Score=125.40  Aligned_cols=107  Identities=13%  Similarity=0.086  Sum_probs=85.2

Q ss_pred             CCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHh--cccc
Q psy3415          67 TPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRC--CDTG  134 (176)
Q Consensus        67 ~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~i--G~~g  134 (176)
                      .+++-.|+.++.+++.+.+||+.      +|   .++.|.+++ +-.+..+.+.. -+.+|| .++|+.|++++  |+.|
T Consensus        19 ~~~i~sd~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~-~~d~~~i~~~~~~~~~dV-ia~~~~l~e~~g~g~~g   96 (444)
T 2pfm_A           19 MGAIWTEENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHA-SFDIDRIYEIEKETRHDV-VAFTRAVSETPALGEER   96 (444)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHC-CCCHHHHHHHHHHHCCHH-HHHHHHHHTCTTCCGGG
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC-CCCHHHHHHHhccCCCCH-HHHHHHHHHHcCCCccc
Confidence            44566699999999999999999      34   456666552 10012222211 135899 79999999999  7899


Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         135 RKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       135 GkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus        97 ~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~  137 (444)
T 2pfm_A           97 KWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILAN  137 (444)
T ss_dssp             GGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999864

>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1

Probab=99.39  E-value=2.7e-13  Score=122.05  Aligned_cols=103  Identities=16%  Similarity=0.123  Sum_probs=81.6

Q ss_pred             cchhhhhhhhhhhhhhHhh------h---cccccccccchhh--hhhhhhcC-CCCchhHHHHHHHHHHHhc---cc-cc
Q psy3415          72 DDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNN--IHKLESSA-LSEEMDSSSLSSGGQLRCC---DT-GR  135 (176)
Q Consensus        72 ~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~--L~~l~~~g-~~~EDIH~aiE~~Lie~iG---~~-gG  135 (176)
                      .|..++.+++.+.+||+..      |   .++.|.+++....  +..+.... -+.+||| ++|+.|++++|   +. ++
T Consensus        20 s~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~~~f~~~~~~~~~~~~~~dV~-a~~~~l~e~~g~~~~~~~~   98 (450)
T 1re5_A           20 SDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAI-PLVKALGKVIATGVPEAER   98 (450)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHHHHHHHHHSSSHH-HHHHHHHHHHHHHCGGGGG
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHhccCccHH-HHHHHHHHHhCCCCCcccc
Confidence            4899999999999999993      4   4566666521100  11111111 1258998 99999999999   87 99


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         136 KLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       136 kLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      ++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus        99 ~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~  138 (450)
T 1re5_A           99 YVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQ  138 (450)
T ss_dssp             GTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999864

>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A

Probab=99.33  E-value=2.1e-12  Score=118.70  Aligned_cols=130  Identities=11%  Similarity=0.052  Sum_probs=96.9

Q ss_pred             chhhhhhhhhhccccccCC-CCCCCccccCCCcc-cchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhh
Q psy3415          39 RDQYNFIGRHKNIDELLGN-EVPPPAAPVTPQSS-DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHK  107 (176)
Q Consensus        39 ~~~~~~~~~~~~i~~Rl~g-~~~~~v~~f~sSi~-~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~  107 (176)
                      |-....+|.+.==.+.+=| .+...+..|+-|.. .++.+..++..+.+||+.      +|   .++.|.++     +++
T Consensus        33 r~e~d~~g~~~vp~~~~~G~~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a-----~~e  107 (495)
T 4adm_A           33 RIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAA-----AAE  107 (495)
T ss_dssp             EEEEETTEEEEEETTCSCCHHHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHH
T ss_pred             CCccCcCCCccCChhhhcCchhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHH
Confidence            4445566665544444444 44566778886642 345555566667999998      45   57788888     677


Q ss_pred             hhhcC----CC--------CchhHHHHHHHHHHHh--ccccccccc------ccchhHHHHHHHHHHHHHHHH-HHHHHH
Q psy3415         108 LESSA----LS--------EEMDSSSLSSGGQLRC--CDTGRKLHT------GRSRNDMIVTDLRLYTRKHID-IIIELL  166 (176)
Q Consensus       108 l~~~g----~~--------~EDIH~aiE~~Lie~i--G~~gGkLHT------GRSRNDqvAT~~RL~lRd~l~-~l~~~L  166 (176)
                      +.++.    |+        .+|+|+++|..+..+.  |  |+++|+      ||||||++.|++||++|+.+. .+...|
T Consensus       108 i~~~~~~~~f~~~~~q~g~gt~~nmnvnevia~ra~lG--G~~vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L  185 (495)
T 4adm_A          108 IADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAKG--GVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPAL  185 (495)
T ss_dssp             HHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHT--TCCCCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHhCcccCCCCcchhhccccccccccHHHHHHHHHHhC--CCccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            65432    54        2799999999999954  8  888998      899999999999999999997 599999


Q ss_pred             HHHHHHHhc
Q psy3415         167 LTMIKHLTK  175 (176)
Q Consensus       167 ~~L~~aLl~  175 (176)
                      ..|+++|.+
T Consensus       186 ~~L~~~L~~  194 (495)
T 4adm_A          186 QQLHDALAA  194 (495)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999864

>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A

Probab=99.30  E-value=5.3e-12  Score=115.02  Aligned_cols=103  Identities=9%  Similarity=-0.035  Sum_probs=84.0

Q ss_pred             CCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------CchhHHHHH---
Q psy3415          68 PQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------EEMDSSSLS---  123 (176)
Q Consensus        68 sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~EDIH~aiE---  123 (176)
                      +....++.++.++..+.+||+.      +|   .++.|.++     ++++.+..    |+        .+++|++++   
T Consensus        37 ~~~~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a-----~~~i~~~~~~~~f~~~~~~~g~gt~~nmnvnevi  111 (468)
T 3r6q_A           37 TGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKA-----ADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVI  111 (468)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHHTTTTGGGCCSCSSCSSTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHhCccccCCCccHHhccccccccccHHHHH
Confidence            3345578999999999999999      45   57788888     66665432    54        257887765   


Q ss_pred             -HHHHHHhcccccc---ccc------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         124 -SGGQLRCCDTGRK---LHT------GRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       124 -~~Lie~iG~~gGk---LHT------GRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       .++++++|+.+|+   +|+      ||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus       112 a~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l~~l~~~L~~L~~~L~~  173 (468)
T 3r6q_A          112 ANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMK  173 (468)
T ss_dssp             HHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             6788899976554   996      999999999999999999999999999999999864

>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}

Probab=99.27  E-value=1.4e-11  Score=111.10  Aligned_cols=98  Identities=15%  Similarity=0.174  Sum_probs=76.7

Q ss_pred             chhhhhhhhhhhhhhHhhhcccccccccchhhhhhhhhc-CCC-----------CchhHHHHHHHHHHHhccc-cccccc
Q psy3415          73 DEGDCYAGNKVNLDDVKIHDSTPQTSTIHHNNIHKLESS-ALS-----------EEMDSSSLSSGGQLRCCDT-GRKLHT  139 (176)
Q Consensus        73 D~~i~~~di~v~lAHvvII~A~~Il~al~~~~L~~l~~~-g~~-----------~EDIH~aiE~~Lie~iG~~-gGkLHT  139 (176)
                      |...|...+.+..||+..... .++....   ..++.+. .|+           ..||| ++|+.|++++|+. ||++|+
T Consensus        16 ~~~~~~~~l~ve~Ala~a~~~-GlIp~~~---~~~i~~~~~~d~~~i~~~e~~~~hdV~-a~~~~l~e~~g~~~~~~iH~   90 (438)
T 4eei_A           16 DENKYAKMLEVELAILEALED-RMVPKGT---AAEIRARAQIRPERVDEIEKVTKHDII-AFCTSIAEQFTAETGKFFHF   90 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGG-TTSCTTH---HHHHHHHCCCCHHHHHHHHHHHSCHHH-HHHHHHHTTSCTTTTTTTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHhc-CCCCHHH---HHHHHhhCCCCHHHHHHHHHhcCCCHH-HHHHHHHHHcCHHhhcccCC
Confidence            667888889999999995522 3332211   1122111 122           47996 8999999999987 999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         140 GRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       140 GRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      ||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus        91 G~SsnDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~  126 (438)
T 4eei_A           91 GVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLT  126 (438)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999864

>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A

Probab=99.24  E-value=5.1e-12  Score=111.32  Aligned_cols=103  Identities=18%  Similarity=0.187  Sum_probs=78.0

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhh--hhhhhhcCCCCchhHHHHHHHHHHHhc-ccccccccc
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNN--IHKLESSALSEEMDSSSLSSGGQLRCC-DTGRKLHTG  140 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~--L~~l~~~g~~~EDIH~aiE~~Lie~iG-~~gGkLHTG  140 (176)
                      |...+.+...+.+||+.      +|   .+++|.+++....  +..+....-..++.+.++|+.|++++| +.|+++|+|
T Consensus        26 ~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vH~G  105 (359)
T 2fel_A           26 AKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSALRHGVAKDGVVVPELIRQMRAAVAGQAADKVHFG  105 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHSSSHHHHHHHHHTTSCGGGGGGTTTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccccHHHHHhhccccCCcHHHHHHHHHHHcCccccchhcCC
Confidence            77778888899999999      34   4555655521100  111101000125677899999999998 579999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         141 RSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       141 RSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |||||++.|++||++|+.+..+...|..|+++|.+
T Consensus       106 ~SsnDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~  140 (359)
T 2fel_A          106 ATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGD  140 (359)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999864

>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}

Probab=99.19  E-value=1.8e-11  Score=111.05  Aligned_cols=118  Identities=11%  Similarity=0.031  Sum_probs=81.8

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------h--h---cccccccccchhhhhhhhhc-CCCCchh
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------I--H---DSTPQTSTIHHNNIHKLESS-ALSEEMD  118 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------I--I---~A~~Il~al~~~~L~~l~~~-g~~~EDI  118 (176)
                      +++|+++.  +.|..+-|    |...+...+.+.+||+.      +  |   +++.|.+++.......+... ....+||
T Consensus        11 l~~ry~~~--~~m~~~fs----~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~~~~~e~~~~~DV   84 (478)
T 1yis_A           11 LSTRYCKN--SPLVSILS----ETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDV   84 (478)
T ss_dssp             HHHTTTTT--CTHHHHTS----HHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHHHHHHHHHSSCHH
T ss_pred             cccccCCh--HHHHHHcC----chHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHHHhhHHHhcCCcH
Confidence            67788763  22553322    44467777788999987      4  5   34555555221101111000 0125899


Q ss_pred             HHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         119 SSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       119 H~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |..+|. |++++|+.||++|+|||+||.+.|...||+|+.+..+...|..|+++|.+
T Consensus        85 ~a~v~~-l~e~~g~~~~~iH~G~TS~Di~~ta~~L~lr~~l~~l~~~L~~L~~~L~~  140 (478)
T 1yis_A           85 MAHNHA-FGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAA  140 (478)
T ss_dssp             HHHHHH-HHHHCTTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHhhhhchhheeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999995 89999999999999997777666666699999999999999999999864

>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A

Probab=99.15  E-value=6.4e-11  Score=108.42  Aligned_cols=98  Identities=12%  Similarity=0.041  Sum_probs=81.5

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------CchhHHHHH----HHHH
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------EEMDSSSLS----SGGQ  127 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~EDIH~aiE----~~Li  127 (176)
                      ...+..+...+.+||+.      +|   .++.|.++     ++++.+..    |+        .+++|++++    ++++
T Consensus        62 ~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI~~a-----~~ei~~g~~~~~f~~~~~q~g~gt~~nmnvnevia~~a~  136 (478)
T 3ocf_A           62 IPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAA-----CDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRAL  136 (478)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHTTTTGGGCCCBTTCSSTTHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-----HHHHHcCccccCCCcchhhccCCccccchHHHHHHHHHH
Confidence            36889999999999999      45   57788888     66665422    54        268888765    6788


Q ss_pred             HHhcc-cccc--cc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         128 LRCCD-TGRK--LH------TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       128 e~iG~-~gGk--LH------TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +++|+ .|++  +|      +||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus       137 e~~G~~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~  193 (478)
T 3ocf_A          137 EHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEA  193 (478)
T ss_dssp             HHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHhchhcCCCCccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99995 6777  99      9999999999999999999999999999999999864

>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}

Probab=99.08  E-value=2.8e-10  Score=104.68  Aligned_cols=99  Identities=11%  Similarity=0.110  Sum_probs=80.3

Q ss_pred             cchhhhhhhhhhhhhhHhhh--------cccccccccchhhhhhhhhcC----CC--------CchhHH----HHHHHHH
Q psy3415          72 DDEGDCYAGNKVNLDDVKIH--------DSTPQTSTIHHNNIHKLESSA----LS--------EEMDSS----SLSSGGQ  127 (176)
Q Consensus        72 ~D~~i~~~di~v~lAHvvII--------~A~~Il~al~~~~L~~l~~~g----~~--------~EDIH~----aiE~~Li  127 (176)
                      ...++..+...+.+|++...        .++.|+++     ++++.+..    |+        .+++++    .||++++
T Consensus        68 ~~~~~i~a~~~vkkAaA~an~~~Gl~~~~a~aI~~a-----~~ev~~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~  142 (490)
T 3e04_A           68 MPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKA-----ADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAI  142 (490)
T ss_dssp             CCHHHHHHHHHHHHHHHHHGGGGTCCHHHHHHHHHH-----HHHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH-----HHHHHcCCcccCCceeeecCCCCCcccccHHHHHHHHHH
Confidence            34688999999999999943        45667777     77776543    54        145544    6999999


Q ss_pred             HHhc-cccccc--cc------ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415         128 LRCC-DTGRKL--HT------GRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK  175 (176)
Q Consensus       128 e~iG-~~gGkL--HT------GRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~  175 (176)
                      +++| +.|+|+  |+      ||||||++.|++|||+|+.+. .+...|..|+++|.+
T Consensus       143 e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~aL~~  200 (490)
T 3e04_A          143 EMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDA  200 (490)
T ss_dssp             HHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 688875  87      999999999999999999986 699999999999864

>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}

Probab=99.02  E-value=8e-10  Score=101.44  Aligned_cols=100  Identities=16%  Similarity=0.084  Sum_probs=81.9

Q ss_pred             ccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--C----------chhHHHHHHH
Q psy3415          71 SDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--E----------EMDSSSLSSG  125 (176)
Q Consensus        71 ~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--~----------EDIH~aiE~~  125 (176)
                      ..++.+..+...+.+|++.      +|   .++.|+++     ++++.+..    |+  +          -.+++.||++
T Consensus        60 ~~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a-----~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~r  134 (482)
T 3gtd_A           60 KMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKA-----IDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASI  134 (482)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHcCCcccCCCeehhccCCCccccchHHHHHHHH
Confidence            3578999999999999999      45   46778888     77766533    54  1          1466779999


Q ss_pred             HHHHhc-cccccc--cc------ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415         126 GQLRCC-DTGRKL--HT------GRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK  175 (176)
Q Consensus       126 Lie~iG-~~gGkL--HT------GRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~  175 (176)
                      +++++| +.|++.  |+      ||||||++.|++|||+|+.+. .+...|..|+++|.+
T Consensus       135 a~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~  194 (482)
T 3gtd_A          135 ANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQD  194 (482)
T ss_dssp             HHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999 678874  76      999999999999999999986 699999999999864

>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*

Probab=98.96  E-value=6.8e-10  Score=101.70  Aligned_cols=117  Identities=11%  Similarity=0.068  Sum_probs=80.4

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------h-h---cccccccccchhhhhhhhhc-CCCCchhH
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------I-H---DSTPQTSTIHHNNIHKLESS-ALSEEMDS  119 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------I-I---~A~~Il~al~~~~L~~l~~~-g~~~EDIH  119 (176)
                      +++|++.   +.|..+-|    |..-+...+.+.+||+.      + |   +++.|.+++.......+... ....+|||
T Consensus        39 l~~ry~~---~~m~~~fS----~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~~~~~e~~~~hDV~  111 (503)
T 2j91_A           39 LASRYAS---PEMCFVFS----DRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVM  111 (503)
T ss_dssp             HHHTTSC---HHHHHHTS----HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHHHHHHHHHHSCHHH
T ss_pred             cccccCC---HHHHHHhC----hhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHHHhhhhhhcCCcHH
Confidence            5667765   24554333    44466677788888887      4 5   34555554221111111000 01148999


Q ss_pred             HHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         120 SSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       120 ~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      ..+|. |++++|+.||++|+|||+||.+.|...||+|+.+..+...|..|+++|.+
T Consensus       112 a~v~~-l~e~~g~~~~~iH~G~TS~Di~dta~~L~lr~al~~l~~~L~~L~~~L~~  166 (503)
T 2j91_A          112 AHVHT-FGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLAD  166 (503)
T ss_dssp             HHHHH-HHHHCTTTGGGTTTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHhccccccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99995 89999999999999997777666666699999999999999999999864

>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}

Probab=98.22  E-value=3.8e-06  Score=77.12  Aligned_cols=99  Identities=10%  Similarity=0.003  Sum_probs=73.8

Q ss_pred             cchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--C----------chhHHHHHHHH
Q psy3415          72 DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--E----------EMDSSSLSSGG  126 (176)
Q Consensus        72 ~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--~----------EDIH~aiE~~L  126 (176)
                      ..+++..+...+.+|-+.      +|   .++.|.++     .+++.+..    |+  .          --+.+.|-++.
T Consensus        72 ~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A-----~~ei~~g~~~~~F~~d~~q~gsgt~~nmn~nevian~a  146 (495)
T 4hgv_A           72 QPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKA-----AQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRA  146 (495)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHHTTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHcCchhhccchhhhhhccccccCcchhHHHHHHH
Confidence            346677777778887777      45   46778887     77776543    44  1          12445667788


Q ss_pred             HHHhccccc---------ccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415         127 QLRCCDTGR---------KLHTGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK  175 (176)
Q Consensus       127 ie~iG~~gG---------kLHTGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~  175 (176)
                      .+.+|...|         .+|.|+|+||++.|++||++++++. .+...|..|+++|.+
T Consensus       147 ~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~~~L~~~L~~L~~~L~~  205 (495)
T 4hgv_A          147 IELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPALKHLHKALEE  205 (495)
T ss_dssp             HHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888885332         4899999999999999999999886 588999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1k62b_	459	Argininosuccinate lyase/delta-crystallin {Human (H	99.93
d1tj7a_	455	Argininosuccinate lyase/delta-crystallin {Escheric	99.93
d1tjva_	449	Argininosuccinate lyase/delta-crystallin {Domestic	99.91
d1f1oa_	408	Adenylosuccinate lyase {Bacillus subtilis [TaxId:	99.31
d1re5a_	448	3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {	99.18
d1j3ua_	462	L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T	99.1
d1dofa_	402	Adenylosuccinate lyase {Archaeon Pyrobaculum aerop	99.07
d1c3ca_	429	Adenylosuccinate lyase {Thermotoga maritima [TaxId	99.0
d1q5na_	444	3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {	98.95
d1jswa_	459	L-aspartate ammonia lyase {Escherichia coli [TaxId	98.51
d1yfma_	459	Fumarase {Baker's yeast (Saccharomyces cerevisiae)	98.41
d1fuoa_	456	Fumarase {Escherichia coli [TaxId: 562]}	98.23
d1vdka_	460	Fumarase {Thermus thermophilus [TaxId: 274]}	97.9

>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-27  Score=211.22  Aligned_cols=120  Identities=22%  Similarity=0.228  Sum_probs=109.3

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc----CCC---
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS----ALS---  114 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~----g~~---  114 (176)
                      -||||++++++.+..|++|+.||+++|++||.+++||+.      +|   ++++|+++     |.++.++    .|+   
T Consensus         4 W~gr~~~~~~~~~~~f~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~I~~a-----l~~i~~~~~~~~~~~~~   78 (459)
T d1k62b_           4 WGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHG-----LDKVAEEWAQGTFKLNS   78 (459)
T ss_dssp             SCSCCCCSSCHHHHHTTCCHHHHGGGHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH-----HHHHHHHHHHTCCCCCT
T ss_pred             CCccCCcchhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHHHhcCCcccCC
Confidence            489999999999999999999999999999999999998      34   78889999     5555432    343   


Q ss_pred             -CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 -EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 -~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       .||+|+++|.+|++++|+.||++|+||||||++.|++||++|+.+..+...|..|+++|++
T Consensus        79 ~~ed~~~~ie~~l~~~~g~~~~~vH~G~S~nD~~~Ta~~L~~r~~l~~l~~~l~~l~~~L~~  140 (459)
T d1k62b_          79 NDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVD  140 (459)
T ss_dssp             TCCSHHHHHHHHHHHTTSSGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHhhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             3999999999999999999999999999999999999999999999999999999999874

>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.5e-27  Score=210.29  Aligned_cols=119  Identities=18%  Similarity=0.158  Sum_probs=107.9

Q ss_pred             ccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh----cC---CC-
Q psy3415          52 DELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES----SA---LS-  114 (176)
Q Consensus        52 ~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~----~g---~~-  114 (176)
                      ||||++++++.+.+|++|+.||+++|++||.+++||+.      ||   ++++|+++     |.++.+    .+   ++ 
T Consensus         3 ~gr~~~~~~~~~~~f~~s~~~D~~l~~~di~~~~Aha~~l~~~gii~~~~~~~I~~a-----l~~i~~~~~~~~~~~~~~   77 (455)
T d1tj7a_           3 GGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEA-----LNVLLEDVRARPQQILES   77 (455)
T ss_dssp             CTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHHHHHHCGGGGGGS
T ss_pred             CccCCCcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHHHHcCCCccCCC
Confidence            79999999999999999999999999999999999999      34   68889888     554432    22   22 


Q ss_pred             -CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         115 -EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       115 -~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       .||||+++|.+|++++|+.||++|+||||||++.|++|||+|+.+..+...+..|+++|++
T Consensus        78 ~~edv~~~ie~~l~~~~g~~~~~vH~G~S~nD~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~  139 (455)
T d1tj7a_          78 DAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVE  139 (455)
T ss_dssp             CCSSHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhhcCcchhhccCCccchhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence             4999999999999999999999999999999999999999999999999999999999874

>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]

Probab=99.91  E-value=1e-25  Score=199.06  Aligned_cols=112  Identities=27%  Similarity=0.318  Sum_probs=101.0

Q ss_pred             CCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc---C-CC----CchhHHH
Q psy3415          59 VPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS---A-LS----EEMDSSS  121 (176)
Q Consensus        59 ~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~---g-~~----~EDIH~a  121 (176)
                      |+|.+++|++||.||+++|++||.+++||+.      ||   ++++|+++     |.+++.+   | |.    .||||++
T Consensus         1 t~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~Gii~~~~~~~I~~a-----l~~i~~~~~~~~~~~~~~~edi~~~   75 (449)
T d1tjva_           1 TDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG-----LEKISEEWSKGVFVVKQSDEDIHTA   75 (449)
T ss_dssp             CCHHHHHHHCCTTTGGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHHHHHHTCCCCCTTCCSHHHH
T ss_pred             CcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHHHhcCCcccCCccchHHHH
Confidence            5788999999999999999999999999998      45   78889998     5555432   3 43    4999999


Q ss_pred             HHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         122 LSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       122 iE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +|.+|++++|+.||++|+||||||++.|++|||+|+.+..+...+..|+++|++
T Consensus        76 ie~~l~e~~G~~~~~vh~G~S~nD~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~  129 (449)
T d1tjva_          76 NERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE  129 (449)
T ss_dssp             HHHHHHHHHCGGGGGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChhhhhcCcCCCccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999864

>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.31  E-value=1.1e-12  Score=114.16  Aligned_cols=101  Identities=14%  Similarity=0.148  Sum_probs=77.2

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccccc
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTGRS  142 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTGRS  142 (176)
                      |...+...+.+..||+.      +|   +++.|..++ +..+..+.+.. -...||+ ++|+.|++++|+.+|++|+|||
T Consensus         8 ~~~~~~~~l~ve~A~a~a~~e~G~ip~~~~~~i~~~~-~~~~~~~~~~~~~~~~~v~-a~~~~L~e~~g~~~~~vH~G~S   85 (408)
T d1f1oa_           8 DENRFQAWLEVEILACEAWAELGVIPKEDVKVMRENA-SFDINRILEIEKDTRHDVV-AFTRAVSESLGEERKWVHYGLT   85 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC-cCCHHHHHHHHhhcCCcHH-HHHHHHHHHcCchhhhhcCCCC
Confidence            55667777889999998      44   334444331 11122232221 1247885 9999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         143 RNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       143 RNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |||++.|++||++|+.+..+...|..++++|.+
T Consensus        86 snD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~  118 (408)
T d1f1oa_          86 STDVVDTALSYLLKQANDILLKDLERFVDIIKE  118 (408)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999864

>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Pseudomonas putida, strain KT2440 [TaxId: 303]

Probab=99.18  E-value=5.8e-12  Score=110.18  Aligned_cols=118  Identities=16%  Similarity=0.171  Sum_probs=84.3

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhh--hhhhhhc-CCCCchh
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNN--IHKLESS-ALSEEMD  118 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~--L~~l~~~-g~~~EDI  118 (176)
                      .|+||+.   |.|..+-    .|+..+.+.+.+..||+.      +|   .+++|.+++....  ...+.+. +....|+
T Consensus         4 ~~~~y~~---~~~~~if----sd~~~~~~~l~ve~A~a~a~~e~G~ip~~~~~~I~~~~~~~~~d~~~~~~~~~~~~~~~   76 (448)
T d1re5a_           4 FDAYFTA---PAMREIF----SDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSA   76 (448)
T ss_dssp             THHHHSC---HHHHHHT----SHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHHHHHHHHHSSSH
T ss_pred             cccccCc---HHHHHHh----ChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCcCHHHHHHHHhHhcCCc
Confidence            4677753   5565442    288899999999999998      44   3455555421100  1111110 0011232


Q ss_pred             H---HHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         119 S---SSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       119 H---~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +   .+++..+.+.+|+.++++|+||||||++.|++||++|+.+..+...+..|+++|.+
T Consensus        77 ~~~v~~~~~~~~~~~g~~~~~vH~G~TsnDi~~Ta~~L~lr~~~~~l~~~l~~l~~~L~~  136 (448)
T d1re5a_          77 IPLVKALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQ  136 (448)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCcchHhHccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   57888899999999999999999999999999999999999999999999999864

>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Bacillus sp., ym55-1 [TaxId: 1409]

Probab=99.10  E-value=8.6e-11  Score=104.08  Aligned_cols=98  Identities=9%  Similarity=0.002  Sum_probs=79.0

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--C----------chhHHHHHHHHH
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--E----------EMDSSSLSSGGQ  127 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--~----------EDIH~aiE~~Li  127 (176)
                      ...+-.+...+.+|.+.      +|   .|+.|.++     ++++.+..    |+  +          .+++..+..++.
T Consensus        38 ~~~~i~a~~~vk~A~A~an~~~G~i~~~~a~aI~~a-----~~ei~~~~~~~~f~~d~~~~g~gt~~~~~~~e~i~~~~~  112 (462)
T d1j3ua_          38 HPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKA-----ADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRAL  112 (462)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHHTTSCGGGCCSCSSCSGGGHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHcCCcccccceehHhhccchhhhhhhhhhhHHHHH
Confidence            56677777777777666      56   57888888     77776543    43  1          467778889999


Q ss_pred             HHhccccc---------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         128 LRCCDTGR---------KLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       128 e~iG~~gG---------kLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      +.+|...|         ++|+||||||++.|++||++|+.+..+...+..|+++|.+
T Consensus       113 ~~~g~~~g~~~~~~p~~~vH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~  169 (462)
T d1j3ua_         113 ELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMK  169 (462)
T ss_dssp             HHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCcCCCccccccchhhhhccchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            99996444         5999999999999999999999999999999999999864

>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.07  E-value=7.2e-11  Score=102.12  Aligned_cols=113  Identities=17%  Similarity=0.038  Sum_probs=79.9

Q ss_pred             cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC-CCCchhHH
Q psy3415          51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA-LSEEMDSS  120 (176)
Q Consensus        51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~  120 (176)
                      +++||+.   +.|..+.    .|...+...+.+..||+..      |   .+++|..+...  +.++.+.. -..-|| .
T Consensus         5 ~d~ry~~---~~~~~if----s~~~~~~~~l~ve~a~a~a~~e~G~ip~~~a~~i~~~~~d--~~~i~~~e~~~~hdv-~   74 (402)
T d1dofa_           5 FDWRYGS---EEIRRLF----TNEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVS--ADEVYRLERETGHDI-L   74 (402)
T ss_dssp             GGTTSSC---HHHHTTS----SHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCC--TTTC--------CHH-H
T ss_pred             CccccCC---HHHHHHc----ChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccC--HHHHHHHHHHhCCCc-h
Confidence            5678853   4555543    2778888889999999983      3   23333322000  11111111 112566 7


Q ss_pred             HHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         121 SLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       121 aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      ++|..|.++.|  ++++|+||||||++.|++||++|+.+..+...+..++++|.+
T Consensus        75 a~~~~l~~~~~--~~~vH~G~TsnDi~~ta~~l~~r~~~~~l~~~l~~l~~~L~~  127 (402)
T d1dofa_          75 SLVLLLEQKSG--CRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLAS  127 (402)
T ss_dssp             HHHHHHHHHHC--CSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhH--HHHhhccCchHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            99999999987  789999999999999999999999999999999999999864

>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.00  E-value=2.4e-10  Score=99.56  Aligned_cols=101  Identities=14%  Similarity=0.080  Sum_probs=75.1

Q ss_pred             chhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccccc
Q psy3415          73 DEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTGRS  142 (176)
Q Consensus        73 D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTGRS  142 (176)
                      |...+...+.+..||+..      |   .+++|.++.. ..+..+.+.. -...||+ +++..|.+++|+.|+++|+|||
T Consensus        15 ~~~~~~~~~~ve~A~a~a~~~~g~ip~~~~~~I~~~~~-~d~~~i~~~e~~t~hdV~-a~v~~l~~~~g~~~~~vH~G~T   92 (429)
T d1c3ca_          15 EEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNAK-IDVELFKKIEEKTNHDVV-AFVEGIGSMIGEDSRFFHYGLT   92 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHCC-CCHHHHHHHHHHHCCHHH-HHHHHHHHHHGGGGGGTTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhCC-CCHHHHHHHHHHhCCCcH-HHHHHHHHHcchhhccccCCCC
Confidence            666778888999999983      3   2333332210 0011111110 1137895 7889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         143 RNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       143 RNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                      |||++.|+++|++|+.+..+...+..|+++|.+
T Consensus        93 s~Di~~ta~~l~~~~~~~~l~~~l~~l~~~l~~  125 (429)
T d1c3ca_          93 SSDVLDTANSLALVEAGKILLESLKEFCDVLWE  125 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999864

>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.95  E-value=3.8e-10  Score=98.21  Aligned_cols=99  Identities=12%  Similarity=0.059  Sum_probs=72.5

Q ss_pred             cchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc-C---CC-----CchhHHHHHHHHHH---Hh
Q psy3415          72 DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS-A---LS-----EEMDSSSLSSGGQL---RC  130 (176)
Q Consensus        72 ~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~-g---~~-----~EDIH~aiE~~Lie---~i  130 (176)
                      .|+.++.+++.+.+||+.      +|   .+++|.++     ++...+. .   +.     ....+.+++..+..   ..
T Consensus        17 sd~~~i~~~~~ve~a~a~a~~~~g~i~~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~   91 (444)
T d1q5na_          17 SDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRA-----AKTAIDKIDFDALATATGLAGNIAIPFVKQLTAIVKDA   91 (444)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HTTHHHHCCHHHHHHHHHHHSSSHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHhCCHHHHHHhhcccccchHHHHHHHHHHHhhc
Confidence            489999999999999998      34   45556555     2221111 1   11     12333455555443   33


Q ss_pred             -cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         131 -CDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       131 -G~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                       ++.++++|+||||||++.|+++|++|+.+..+...+..++++|++
T Consensus        92 ~~~~~~~vh~g~ts~Di~~ta~~l~~~~~~~~l~~~l~~l~~~l~~  137 (444)
T d1q5na_          92 DEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALS  137 (444)
T ss_dssp             CTTGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence             368999999999999999999999999999999999999999864

>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=7.2e-08  Score=85.20  Aligned_cols=95  Identities=7%  Similarity=0.049  Sum_probs=68.0

Q ss_pred             hhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-----CC----CchhHHHHHHHHHHHhcc-----
Q psy3415          76 DCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-----LS----EEMDSSSLSSGGQLRCCD-----  132 (176)
Q Consensus        76 i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-----~~----~EDIH~aiE~~Lie~iG~-----  132 (176)
                      +..+...+.+|-+.      +|   .|+.|.++     .+++...|     |+    .++.++.....+.+.++.     
T Consensus        47 ~i~a~~~vk~A~A~an~~~G~i~~~~a~aI~~a-----~~evi~~g~~~~~f~~d~~q~g~gt~~nmn~nevia~~a~~~  121 (459)
T d1jswa_          47 FVRGMVMVKKAAAMANKELQTIPKSVANAIIAA-----CDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLEL  121 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----HHHHHhCCCchhhhcchhhhhhhhhhhhccchhHHHHHHHHh
Confidence            44444455544433      45   57788888     77765444     44    256666555555554432     


Q ss_pred             ------------cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415         133 ------------TGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK  175 (176)
Q Consensus       133 ------------~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~  175 (176)
                                  .+.++|+|+||||++.|++||++|+.+..+...|..|+++|.+
T Consensus       122 ~g~~~g~~~~v~p~~~Vh~G~SsnDi~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~  176 (459)
T d1jswa_         122 MGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFER  176 (459)
T ss_dssp             TTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCccCCccccchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        2356999999999999999999999999999999999999864

>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=2.6e-07  Score=81.69  Aligned_cols=99  Identities=12%  Similarity=0.008  Sum_probs=73.0

Q ss_pred             cchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------CchhHHHHHHHHHHHh
Q psy3415          72 DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------EEMDSSSLSSGGQLRC  130 (176)
Q Consensus        72 ~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~EDIH~aiE~~Lie~i  130 (176)
                      ++..+-.+...+.+|++.      +|   .++.|.++     ++++.+..    |+        ....++++...+..+.
T Consensus        40 ~~~~~i~a~~~vk~A~A~an~~lG~l~~~~a~aI~~a-----~~ei~~g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a  114 (459)
T d1yfma_          40 MPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQA-----ADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRA  114 (459)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHcCCccccccchHHhhccccccccchhhhhHHHH
Confidence            456677777777777766      55   67888888     77776543    54        1456666666665555


Q ss_pred             ccc------------ccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415         131 CDT------------GRKLHTGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK  175 (176)
Q Consensus       131 G~~------------gGkLHTGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~  175 (176)
                      ++.            +.++|+|+|+||++.|++||+++..+. .+...|..|+++|.+
T Consensus       115 ~~~~~~~~~~~~vhp~d~v~~gqSsnD~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~  172 (459)
T d1yfma_         115 IEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEA  172 (459)
T ss_dssp             HHC---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHhhccccccccCcchhhhhccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432            335899999999999999999988886 588999999999864

>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=1.3e-06  Score=76.79  Aligned_cols=98  Identities=11%  Similarity=0.074  Sum_probs=74.0

Q ss_pred             chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC------------CchhHHHHHHHHH
Q psy3415          73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS------------EEMDSSSLSSGGQ  127 (176)
Q Consensus        73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~------------~EDIH~aiE~~Li  127 (176)
                      ...+..+...+.+|++.      +|   .++.|.++     ++++.++.    |+            .+++|..+++++.
T Consensus        38 ~~~~i~a~~~vK~A~A~a~~~~Gli~~~~a~aI~~a-----~~eI~~~~~~~~f~~~~~~~g~g~~~~~~v~~vi~~~~~  112 (456)
T d1fuoa_          38 PTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQA-----ADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRAS  112 (456)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHhCCcccccchHHHHhhcchhhcchhHHHHHHHHH
Confidence            44555666666666666      56   67888888     77765532    43            2699999999999


Q ss_pred             HHhccccc---------ccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415         128 LRCCDTGR---------KLHTGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK  175 (176)
Q Consensus       128 e~iG~~gG---------kLHTGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~  175 (176)
                      +.+|..+|         ..|.+||+||++.|++|++.+..+. .+...|..|+++|.+
T Consensus       113 e~~g~~~~~~~~~~~~~~v~~~~s~~d~~~ta~~l~~~~~~~~~l~~~l~~l~~~L~~  170 (456)
T d1fuoa_         113 ELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNE  170 (456)
T ss_dssp             HHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHhCcccccccccchhhHHHHhhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99997544         4667999999999999998877775 477888888888763

>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=1.1e-05  Score=70.89  Aligned_cols=96  Identities=8%  Similarity=0.034  Sum_probs=65.1

Q ss_pred             hhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--C------c----hhHHHHHHHHHHH
Q psy3415          75 GDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--E------E----MDSSSLSSGGQLR  129 (176)
Q Consensus        75 ~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--~------E----DIH~aiE~~Lie~  129 (176)
                      ++..+...+.+|.+.      +|   .|+.|.++     .+++.+..    |+  .      .    .+...+-.+..+.
T Consensus        41 ~~i~a~~~vk~A~A~an~~lG~i~~~~a~aI~~a-----~~ei~~g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a~~~  115 (460)
T d1vdka_          41 EIIRAYGMLKKAAARANLELGELPEEIAKAIIQA-----AEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEI  115 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHhCcchhcCcchHhhhccccccccchhHHHHHHHHhh
Confidence            444555555555555      56   67888888     66665532    54  1      1    2233344444445


Q ss_pred             hcc--------cccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415         130 CCD--------TGRKLHTGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK  175 (176)
Q Consensus       130 iG~--------~gGkLHTGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~  175 (176)
                      +|.        .+.++|+|+|+||++.|+++|++++.+. .+...|..|+++|.+
T Consensus       116 ~~~~~~~~~vhp~~~vh~g~SsnD~~~Ta~~l~~~~~l~~~l~~~L~~L~~~L~~  170 (460)
T d1vdka_         116 LGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTA  170 (460)
T ss_dssp             TTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             hcccccccccChhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            542        2456889999999999999999999987 578999999998864